Search to RefSeq (Human) database
Query= 20040204C-004323 (20040204C-004323) 20040204C-004323
(1327 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|16445419|ref|NP_005689.2| secretory carrier membrane protein ... 452 e-127
Alignment gi|16445421|ref|NP_443069.1| secretory carrier membrane protein ... 397 e-111
Alignment gi|33598920|ref|NP_004857.3| secretory carrier membrane protein ... 227 1e-59
Alignment gi|5730031|ref|NP_005688.2| secretory carrier membrane protein 2... 223 2e-58
Alignment gi|20373183|ref|NP_620417.1| secretory carrier membrane protein ... 155 8e-38
Alignment gi|17738287|ref|NP_524558.1| secretory carrier membrane protein ... 149 3e-36
Alignment gi|16445414|ref|NP_438173.1| secretory carrier membrane protein ... 107 2e-23
Alignment gi|13540490|ref|NP_068585.1| BTB and CNC homology 1, basic leuci... 33 0.57
Alignment gi|41151116|ref|XP_373796.1| hypothetical protein XP_378781 [Hom... 32 0.75
Alignment gi|6631075|ref|NP_004865.1| BCL2-associated athanogene 4; silenc... 32 0.98
>gi|16445419|ref|NP_005689.2| secretory carrier membrane protein 3
isoform 1; propin 1 [Homo sapiens]
Length = 347
Score = 452 bits (1162), Expect = e-127
Identities = 228/342 (66%), Positives = 232/342 (67%)
Frame = +1
Query: 223 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 402
DGGNPFAEP ELDNPFQDPAVIQHRPS QYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPS 65
Query: 403 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 582
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 583 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 762
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 763 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 942
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 943 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1122
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1123 RTGASFQKAQQEFAAGVFSNPAVRTXXXXXXRWSCRKCLPGP 1248
RTGASFQKAQQEFAAGVFSNPAVRT + P
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>gi|16445421|ref|NP_443069.1| secretory carrier membrane protein 3
isoform 2; propin 1 [Homo sapiens]
Length = 321
Score = 397 bits (1020), Expect = e-111
Identities = 208/342 (60%), Positives = 214/342 (62%)
Frame = +1
Query: 223 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 402
DGGNPFAEP ELDNPFQ P + P+P P
Sbjct: 6 DGGNPFAEPSELDNPFQPPPAYEP-PAPA--------PLPPPSAPS-------------- 42
Query: 403 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 582
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 43 ---LQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 583 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 762
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 763 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 942
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 943 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1122
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1123 RTGASFQKAQQEFAAGVFSNPAVRTXXXXXXRWSCRKCLPGP 1248
RTGASFQKAQQEFAAGVFSNPAVRT + P
Sbjct: 280 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 321
>gi|33598920|ref|NP_004857.3| secretory carrier membrane protein 1
isoform 1 [Homo sapiens]
Length = 338
Score = 227 bits (579), Expect = 1e-59
Identities = 136/324 (41%), Positives = 162/324 (50%), Gaps = 2/324 (0%)
Frame = +1
Query: 232 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 408
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 409 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 585
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 586 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 765
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 766 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 945
FCV++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 946 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1125
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGIGGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1126 TGASFQKAQQEFAAGVFSNPAVRT 1197
TGASF+KAQQEFA GV SN V+T
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQT 315
>gi|5730031|ref|NP_005688.2| secretory carrier membrane protein 2
[Homo sapiens]
Length = 329
Score = 223 bits (569), Expect = 2e-58
Identities = 125/318 (39%), Positives = 167/318 (52%), Gaps = 1/318 (0%)
Frame = +1
Query: 232 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 411
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSE--TNAATTVPVTQLPGSSQPAV 62
Query: 412 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 591
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQP------TPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 592 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 771
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 772 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 951
F ++ G FGLSILW L+FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 952 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1128
+Q +GIPG G SGWI+ + AVL + +L+R+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293
Query: 1129 GASFQKAQQEFAAGVFSN 1182
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>gi|20373183|ref|NP_620417.1| secretory carrier membrane protein 5
[Homo sapiens]
Length = 235
Score = 155 bits (391), Expect = 8e-38
Identities = 70/201 (34%), Positives = 103/201 (51%)
Frame = +1
Query: 592 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 771
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCL-A 60
Query: 772 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 951
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 952 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1131
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1132 ASFQKAQQEFAAGVFSNPAVR 1194
SF KAQ+E+ G + NP V+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQ 201
>gi|17738287|ref|NP_524558.1| secretory carrier membrane protein 4
[Homo sapiens]
Length = 229
Score = 149 bits (377), Expect = 3e-36
Identities = 75/201 (37%), Positives = 104/201 (51%), Gaps = 2/201 (0%)
Frame = +1
Query: 598 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 771
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM C+T +
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACL---A 60
Query: 772 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 951
+ + +G+ FGL+ +W+LLFTPC +VCW+RP+YKA Q VL V
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 952 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1131
+QAIG GWG GW+S A + + + ++H +YR G
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 1132 ASFQKAQQEFAAGVFSNPAVR 1194
SFQKAQ E+ G + NP R
Sbjct: 181 GSFQKAQTEWNTGTWRNPPSR 201
>gi|16445414|ref|NP_438173.1| secretory carrier membrane protein 1
isoform 2 [Homo sapiens]
Length = 157
Score = 107 bits (267), Expect = 2e-23
Identities = 71/166 (42%), Positives = 86/166 (51%), Gaps = 2/166 (1%)
Frame = +1
Query: 232 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 408
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 409 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 585
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 586 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 723
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWM 157
>gi|13540490|ref|NP_068585.1| BTB and CNC homology 1, basic leucine
zipper transcription factor 2 [Homo sapiens]
Length = 841
Score = 32.7 bits (73), Expect = 0.57
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 249 GLGEGVSTISALSH---VCNRGPGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRP--ASLC 85
G G+ + + A SH + + PGR P+T P + P +P L R +S C
Sbjct: 469 GAGQSLPSSQAYSHGGLMADHLPGRMRPNTSCPVP-----IKVCPRSPPLETRTRTSSSC 523
Query: 84 TDWLYRPEGSQGSP 43
+ + Y +GS GSP
Sbjct: 524 SSYSYAEDGSGGSP 537
>gi|41151116|ref|XP_373796.1| hypothetical protein XP_378781 [Homo
sapiens]
Length = 206
Score = 32.3 bits (72), Expect = 0.75
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 1178 PTLRCELQLPMQPAGAAENAFRAPVTP*LGCSGPAT*G 1291
PTLR L P + GAA AP+ P G GPAT G
Sbjct: 35 PTLRGRLGFPPETNGAAVRTDEAPLLPSPGAVGPATPG 72
>gi|6631075|ref|NP_004865.1| BCL2-associated athanogene 4; silencer
of death domains; BAG-family molecular chaperone
regulator-4 [Homo sapiens]
Length = 457
Score = 32.0 bits (71), Expect = 0.98
Identities = 20/48 (41%), Positives = 22/48 (45%)
Frame = -2
Query: 150 RRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPRVAPASRLK 7
R PW S APSAP P +L P S GSPQ P P + K
Sbjct: 254 RYPWPSSAPSAP-----PGNLYMTESTSPWPSSGSPQSPPSPPVQQPK 296
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 104
effective length of database: 10,890,061
effective search space used: 3669950557
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-004323 (20040204C-004323) 20040204C-004323
(1327 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6755404|ref|NP_036016.1| secretory carrier membrane protein 3... 417 e-117
Alignment gi|12331398|ref|NP_073724.1| secretory carrier membrane protein ... 214 1e-55
Alignment gi|38075087|ref|XP_356680.1| similar to Scamp1 protein [Mus musc... 196 3e-50
Alignment gi|9937988|ref|NP_064666.1| secretory carrier membrane protein 5... 155 4e-38
Alignment gi|9625033|ref|NP_062521.1| secretory carrier membrane protein 4... 152 5e-37
Alignment gi|6677931|ref|NP_033190.1| SH3-domain binding protein 1 [Mus mu... 34 0.22
Alignment gi|41281977|ref|NP_874357.1| myosin XV isoform 2a; shaker 2; myo... 32 0.63
Alignment gi|6754780|ref|NP_034992.1| myosin XV; shaker 2; myosin XVA [Mus... 32 0.63
Alignment gi|30424661|ref|NP_775604.1| subcommissural organ spondin; SCO-s... 32 1.1
Alignment gi|34147063|ref|NP_898913.1| RIKEN cDNA 2810432C06 [Mus musculus] 31 1.8
>gi|6755404|ref|NP_036016.1| secretory carrier membrane protein 3 [Mus
musculus]
Length = 349
Score = 417 bits (1071), Expect = e-117
Identities = 210/344 (61%), Positives = 223/344 (64%), Gaps = 2/344 (0%)
Frame = +1
Query: 223 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXX- 399
D GNP + GELDNPFQDPAVIQHRPS QYATLDVYNPFE R
Sbjct: 6 DTGNPSPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPP 65
Query: 400 -XXXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHA 576
+QSSRKLSPTEP+NYGSY ELNR AEELDRRERELQH
Sbjct: 66 PSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRTAEELDRRERELQHV 125
Query: 577 ALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXX 756
ALGG TRQNNWPPLPSFCPV+PCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 ALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFF 185
Query: 757 XXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQ 936
FCV+T +GSGFGLS+LW+LLFTPCSFVCWYRPMYKA VQ
Sbjct: 186 ACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQ 245
Query: 937 DVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSL 1116
DV +VLQAIGIPGWGFSGW++ GIAVLGIVMLKRIHSL
Sbjct: 246 DVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLDALLFTGIAVLGIVMLKRIHSL 305
Query: 1117 YRRTGASFQKAQQEFAAGVFSNPAVRTXXXXXXRWSCRKCLPGP 1248
YR+TGASFQKAQQEFAAGVFSNPAVRT + P
Sbjct: 306 YRQTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 349
>gi|12331398|ref|NP_073724.1| secretory carrier membrane protein 2
[Mus musculus]
Length = 329
Score = 214 bits (544), Expect = 1e-55
Identities = 121/330 (36%), Positives = 164/330 (49%), Gaps = 1/330 (0%)
Frame = +1
Query: 232 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 411
NPFA+P ++ NPFQDP+V Q +PQ + L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-SGLAEFNPFS--ETNAATTVPATQAPGPSQPAV 62
Query: 412 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 591
LQ S + P +P EL+RKA EL+R+ERELQ+ A
Sbjct: 63 LQPS--VEPAQP------TPQAVAAAAQAGLLRQQEELDRKAAELERKERELQNTA-ANL 113
Query: 592 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 771
R NNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 772 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 951
F + G+ FGLSILW L+FTPC+F+CWYRP+YKA Q +Y
Sbjct: 174 FTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYF 233
Query: 952 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1128
+Q IG+P G SGW++ + A L + +L+R+H+ YRRT
Sbjct: 234 IQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRT 293
Query: 1129 GASFQKAQQEFAAGVFSNPAVRTXXXXXXR 1218
GASFQ+AQ+EF+ G+FS+ R R
Sbjct: 294 GASFQQAQEEFSQGIFSSRTFRGAASSAAR 323
>gi|38075087|ref|XP_356680.1| similar to Scamp1 protein [Mus musculus]
Length = 644
Score = 196 bits (497), Expect = 3e-50
Identities = 112/278 (40%), Positives = 132/278 (47%), Gaps = 52/278 (18%)
Frame = +1
Query: 520 ELNRKAEELDRRERELQHAALGGTATR---------------------QNNWPPLPSFCP 636
EL RKA ELDRRERE+Q+ + G+ R +NNWPPLPS P
Sbjct: 344 ELERKAAELDRREREMQNLSQHGSIRRVGWVSVHALRHWRVTERCPGRKNNWPPLPSNFP 403
Query: 637 VQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXSFCVETNTGSGFGLSI 816
V PCF+QD S++IP EFQKTV MYYLWM FCV+++ FGLSI
Sbjct: 404 VGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSSRAVDFGLSI 463
Query: 817 LWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVLQAIGIPGWG----- 981
LW LLFTPCSFVCWYRP+Y A Q ++VLQA G WG
Sbjct: 464 LWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNWQTA 523
Query: 982 --------------------------FSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVL 1083
SGWIS AV+
Sbjct: 524 LLPASACTGVHRCALLCVALLFAIVSVSGWISSLTGLNKNIPVGIMMIIIAALFTASAVI 583
Query: 1084 GIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSNPAVRT 1197
+VM K++H LYR TGASF+KAQQEFA GV SN V+T
Sbjct: 584 SLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQT 621
>gi|9937988|ref|NP_064666.1| secretory carrier membrane protein 5 [Mus
musculus]
Length = 235
Score = 155 bits (393), Expect = 4e-38
Identities = 70/201 (34%), Positives = 103/201 (51%)
Frame = +1
Query: 592 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 771
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCL-A 60
Query: 772 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 951
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 952 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1131
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSG 180
Query: 1132 ASFQKAQQEFAAGVFSNPAVR 1194
SF KAQ+E+ G + NP V+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQ 201
>gi|9625033|ref|NP_062521.1| secretory carrier membrane protein 4 [Mus
musculus]
Length = 230
Score = 152 bits (383), Expect = 5e-37
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 2/203 (0%)
Frame = +1
Query: 592 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXX 765
A ++NN+PPLP F P++PCF+QD S EIP E Q V +Y LWM C+T
Sbjct: 2 AGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACL-- 59
Query: 766 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 945
++ + G+ FGL++LW++LFTPCS+VCW+RP YKA Q VL
Sbjct: 60 -AWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVL 118
Query: 946 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1125
V+QAIG GWG GW++ A++ V + ++H +YR
Sbjct: 119 TVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRG 178
Query: 1126 TGASFQKAQQEFAAGVFSNPAVR 1194
G S QKAQ E++AG + NP R
Sbjct: 179 AGGSLQKAQTEWSAGTWRNPPSR 201
>gi|6677931|ref|NP_033190.1| SH3-domain binding protein 1 [Mus
musculus]
Length = 601
Score = 33.9 bits (76), Expect = 0.22
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -2
Query: 198 RGPGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPA----SLCTDWLYRPEGSQGSPQQPR 31
R P P P P+P Q R R P++P++S PA + T+ PE G P P
Sbjct: 527 RAPTMPPPLPPVPPQPARRQSRRLPASPVISNMPAQVDQGVATEDREGPEAVGGHPPPPA 586
Query: 30 VAP 22
+ P
Sbjct: 587 LPP 589
>gi|41281977|ref|NP_874357.1| myosin XV isoform 2a; shaker 2; myosin
XVA [Mus musculus]
Length = 2306
Score = 32.3 bits (72), Expect = 0.63
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 192 PGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPR 31
P +P+ P P+ W +++AP P V L DW PE SP+ R
Sbjct: 1284 PAKPVLVRPTPQSWAPGSVAKAPKIPSKPVAVPILAQDWT-APESISASPELVR 1336
>gi|6754780|ref|NP_034992.1| myosin XV; shaker 2; myosin XVA [Mus
musculus]
Length = 3511
Score = 32.3 bits (72), Expect = 0.63
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 192 PGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPR 31
P +P+ P P+ W +++AP P V L DW PE SP+ R
Sbjct: 2489 PAKPVLVRPTPQSWAPGSVAKAPKIPSKPVAVPILAQDWT-APESISASPELVR 2541
>gi|30424661|ref|NP_775604.1| subcommissural organ spondin;
SCO-spondin [Mus musculus]
Length = 4998
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +3
Query: 984 QWLDLRFDVGEHQRG-----CSCAYAAGRPVLHWHRCAGNCDAKADPLLVSPHGCQLSEG 1148
QW L ++VGE RG C C +++ + H C+ C P+ P G L EG
Sbjct: 1831 QW-GLMYNVGERWRGGPCMVCECLHSS---ITH---CSPYC-----PIGSCPQGWVLVEG 1878
Query: 1149 PARICCRCLL 1178
CC C L
Sbjct: 1879 MGESCCHCAL 1888
>gi|34147063|ref|NP_898913.1| RIKEN cDNA 2810432C06 [Mus musculus]
Length = 103
Score = 30.8 bits (68), Expect = 1.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 516 GGAQPEGRGVGPEGARAAACCPGGHS 593
GG+ P G +G GAR CC G S
Sbjct: 39 GGSGPPGLALGASGARCCGCCSGSFS 64
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 103
effective length of database: 9,208,022
effective search space used: 3112311436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)