Search to RefSeq (Human) database
Query= 20040204C-004566 (20040204C-004566) 20040204C-004566
(952 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4759274|ref|NP_004777.1| thioredoxin-like, 32kDa; thioredoxin... 486 e-138
Alignment gi|4507745|ref|NP_003320.1| thioredoxin [Homo sapiens] 88 1e-17
Alignment gi|42516570|ref|NP_115619.4| thioredoxin domain-containing 2; sp... 74 1e-13
Alignment gi|22045004|ref|XP_171207.1| similar to RIKEN cDNA 4930429J24 [H... 65 7e-11
Alignment gi|5730104|ref|NP_006532.1| thioredoxin-like; PKC-interacting co... 59 5e-09
Alignment gi|21361837|ref|NP_065095.2| HT014 [Homo sapiens] 53 3e-07
Alignment gi|42794775|ref|NP_071368.3| thioredoxin domain containing 5 iso... 50 3e-06
Alignment gi|42794771|ref|NP_110437.2| thioredoxin domain containing 5 iso... 50 3e-06
Alignment gi|21361403|ref|NP_036605.2| thioredoxin 2 precursor; mitochondr... 44 1e-04
Alignment gi|21361657|ref|NP_005304.3| glucose regulated protein, 58kDa [H... 40 0.002
>gi|4759274|ref|NP_004777.1| thioredoxin-like, 32kDa;
thioredoxin-related 32 kDa protein; thioredoxin-like,
32kD [Homo sapiens]
Length = 289
Score = 486 bits (1251), Expect = e-138
Identities = 236/237 (99%), Positives = 236/237 (99%)
Frame = +2
Query: 224 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 403
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 404 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 583
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120
Query: 584 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 763
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKD TFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 764 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 934
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 237
>gi|4507745|ref|NP_003320.1| thioredoxin [Homo sapiens]
Length = 105
Score = 87.8 bits (216), Expect = 1e-17
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = +2
Query: 233 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 412
VK + S FQ L AG +L VV F+ CGPC I P F S+S KY +FLEVDV
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMINPFFHSLSEKYSNVIFLEVDVDD 61
Query: 413 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 538
CQ A+ + TPTF FF+ ++ ++ GA+ LE I +
Sbjct: 62 CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>gi|42516570|ref|NP_115619.4| thioredoxin domain-containing 2;
sperm-specific thioredoxin; thioredoxin
domain-containing 2 (spermatozoa) [Homo sapiens]
Length = 486
Score = 73.9 bits (180), Expect = 1e-13
Identities = 39/101 (38%), Positives = 55/101 (54%)
Frame = +2
Query: 233 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 412
VK + S DF+ L AG RL V F+ CGPC I P F ++S K+ VFLEVD
Sbjct: 383 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 442
Query: 413 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 535
C+ I PTF F++ + ++D+ GA L+EK++
Sbjct: 443 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 479
>gi|22045004|ref|XP_171207.1| similar to RIKEN cDNA 4930429J24 [Homo
sapiens]
Length = 115
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +2
Query: 257 DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATN 436
+F+ L+ AG +LAVV+F+ + CGPC R+ P F +MS KY F VDV+ A T
Sbjct: 10 EFKTFLTAAGHKLAVVQFSSKRCGPCKRMFPVFHAMSVKYQNVFFANVDVNNSPELAETC 69
Query: 437 NISATPTFLFFRNKVRI 487
+I PTF F+ ++
Sbjct: 70 HIKTIPTFQMFKKSQKV 86
>gi|5730104|ref|NP_006532.1| thioredoxin-like; PKC-interacting
cousin of thioredoxin [Homo sapiens]
Length = 335
Score = 58.9 bits (141), Expect = 5e-09
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +2
Query: 224 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 403
+ V+ VGS F+ L L VV F C ++ + ++ + PQ F++++
Sbjct: 10 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69
Query: 404 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 568
+ IS+ PTFLFF+N +ID+ GA A L +K+++H + P +NE
Sbjct: 70 AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127
>gi|21361837|ref|NP_065095.2| HT014 [Homo sapiens]
Length = 211
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Frame = +2
Query: 629 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 790
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
Query: 791 GPKYVKIFINLPRSMDFEEAERSEPTQALELTED 892
P ++++ N+P+ M F++ ER EP Q L D
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPDQTFSLNRD 132
>gi|42794775|ref|NP_071368.3| thioredoxin domain containing 5
isoform 2; thioredoxin related protein; endothelial
protein disulphide isomerase [Homo sapiens]
Length = 389
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Frame = +2
Query: 218 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 346
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 122 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 181
Query: 347 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 514
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 182 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 241
Query: 515 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 688
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 242 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 298
Query: 689 FLE 697
F++
Sbjct: 299 FIK 301
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 293 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YPQAV---FLEVDVHQCQGTAATNNISATPTF 460
+ +KF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 297 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 356
Query: 461 LFFRNKVRIDQYQG 502
L FR ++ ++ G
Sbjct: 357 LLFRGGKKVSEHSG 370
Score = 33.1 bits (74), Expect = 0.28
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +2
Query: 323 CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT-----PTFLFFRNKVRI 487
CG C R+ P ++ + +KY +V V + TA ++ SA PT F+
Sbjct: 46 CGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQEA 105
Query: 488 DQYQG-ADAVGLEEKIKQHLENDPGSNE 568
+YQG D LE + Q L +P + E
Sbjct: 106 VKYQGPRDFQTLENWMLQTLNEEPVTPE 133
>gi|42794771|ref|NP_110437.2| thioredoxin domain containing 5
isoform 1; thioredoxin related protein; endothelial
protein disulphide isomerase [Homo sapiens]
Length = 432
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Frame = +2
Query: 218 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 346
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 165 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 224
Query: 347 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 514
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 225 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 284
Query: 515 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 688
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 285 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 341
Query: 689 FLE 697
F++
Sbjct: 342 FIK 344
Score = 34.7 bits (78), Expect = 0.097
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = +2
Query: 278 GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT-- 451
G S V F CG C R+ P ++ + +KY +V V + TA ++ SA
Sbjct: 74 GIQSAAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSDVCSAQGV 133
Query: 452 ---PTFLFFRNKVRIDQYQG-ADAVGLEEKIKQHLENDPGSNE 568
PT F+ +YQG D LE + Q L +P + E
Sbjct: 134 RGYPTLKLFKPGQEAVKYQGPRDFQTLENWMLQTLNEEPVTPE 176
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 293 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YPQAV---FLEVDVHQCQGTAATNNISATPTF 460
+ +KF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 340 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 399
Query: 461 LFFRNKVRIDQYQG 502
L FR ++ ++ G
Sbjct: 400 LLFRGGKKVSEHSG 413
>gi|21361403|ref|NP_036605.2| thioredoxin 2 precursor; mitochondrial
thioredoxin [Homo sapiens]
Length = 166
Score = 44.3 bits (103), Expect = 1e-04
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Frame = +2
Query: 146 PVPSRVVFSFSFETGGVAATLPGSLRMVGVKPVG-------SDPDFQPELSGAGSRLAVV 304
P+ SR + + GG+ T P R + + PDFQ + + + + VV
Sbjct: 26 PLTSRALQTPQCSPGGLTVT-PNPARTIYTTRISLTTFNIQDGPDFQDRVVNSETPV-VV 83
Query: 305 KFTMRGCGPCLRIAPAFSSM-SNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKV 481
F + CGPC + P M + ++ + V +VD+ A +SA PT L +N
Sbjct: 84 DFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGD 143
Query: 482 RIDQYQG 502
+D++ G
Sbjct: 144 VVDKFVG 150
>gi|21361657|ref|NP_005304.3| glucose regulated protein, 58kDa [Homo
sapiens]
Length = 505
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +2
Query: 248 SDPDFQPELSGAGSR-LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL-EVDVHQCQG 421
+D +F+ +S GS L +V+F CG C R+AP + + + + V L +VD
Sbjct: 31 TDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTN 90
Query: 422 TAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPG 559
T +S PT FR+ Y G + I HL+ G
Sbjct: 91 TCNKYGVSGYPTLKIFRDGEEAGAYDGPRTA---DGIVSHLKKQAG 133
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 101
effective length of database: 10,972,372
effective search space used: 2359059980
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-004566 (20040204C-004566) 20040204C-004566
(952 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31543902|ref|NP_058072.2| thioredoxin-like; thioredoxin-relat... 485 e-137
Alignment gi|6755911|ref|NP_035790.1| thioredoxin 1 [Mus musculus] 85 5e-17
Alignment gi|23943824|ref|NP_705739.1| thioredoxin domain containing 2 (sp... 72 6e-13
Alignment gi|27229039|ref|NP_080408.2| RIKEN cDNA 4930429J24 [Mus musculus] 65 4e-11
Alignment gi|31981269|ref|NP_075629.2| thioredoxin-like 2; PKC interacting... 59 3e-09
Alignment gi|28076883|ref|NP_079687.2| thioredoxin family Trp26 [Mus muscu... 53 3e-07
Alignment gi|9903609|ref|NP_064297.1| thioredoxin 2; thioredoxin nuclear g... 43 2e-04
Alignment gi|45598381|ref|NP_663342.2| thioredoxin domain containing 5; en... 42 7e-04
Alignment gi|6679687|ref|NP_031978.1| glucose regulated protein; endoplasm... 41 0.001
Alignment gi|31712004|ref|NP_853622.1| thioredoxin domain containing 3 (sp... 33 0.24
>gi|31543902|ref|NP_058072.2| thioredoxin-like; thioredoxin-related
protein; thioredoxin-like (32kD) [Mus musculus]
Length = 289
Score = 485 bits (1248), Expect = e-137
Identities = 235/237 (99%), Positives = 236/237 (99%)
Frame = +2
Query: 224 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 403
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 404 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 583
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNED DIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDADIP 120
Query: 584 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 763
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM+FLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMSFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 764 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 934
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 237
>gi|6755911|ref|NP_035790.1| thioredoxin 1 [Mus musculus]
Length = 105
Score = 85.1 bits (209), Expect = 5e-17
Identities = 42/103 (40%), Positives = 58/103 (56%)
Frame = +2
Query: 233 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 412
VK + S FQ L+ AG +L VV F+ CGPC I P F S+ +KY VFLEVDV
Sbjct: 2 VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61
Query: 413 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 541
CQ AA + PTF F++ ++ ++ GA+ LE I ++
Sbjct: 62 CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>gi|23943824|ref|NP_705739.1| thioredoxin domain containing 2
(spermatozoa); spermatid-specific thioredoxin 1 [Mus
musculus]
Length = 462
Score = 71.6 bits (174), Expect = 6e-13
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +2
Query: 233 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 412
V+ + +F+ L AG +L V F+ CGPC + P F S+S K+ +FLEVD
Sbjct: 359 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 418
Query: 413 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 538
C+ I PTF F++N+ ++ ++ GA LE I +
Sbjct: 419 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 460
>gi|27229039|ref|NP_080408.2| RIKEN cDNA 4930429J24 [Mus musculus]
Length = 153
Score = 65.5 bits (158), Expect = 4e-11
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Frame = +2
Query: 215 SLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL 394
S ++ VK + + + + S AG++L VV+F+ + CGPC IAP F +MS KY F
Sbjct: 22 SQMLIMVKRIKNMSELKELFSDAGNKLVVVEFSAKWCGPCKTIAPVFQAMSLKYQNVTFA 81
Query: 395 EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQY----------------------QGAD 508
+VDV + A +I+ PTF F+ ++ + GAD
Sbjct: 82 QVDVDSSKELAEHCDITMLPTFQMFKYTQKVTPFSRLKRVLCCLRSGPKSKMIFECHGAD 141
Query: 509 AVGLEEKIKQ 538
A LE+KI++
Sbjct: 142 AKQLEKKIQE 151
>gi|31981269|ref|NP_075629.2| thioredoxin-like 2; PKC interacting
cousin of thioredoxin [Mus musculus]
Length = 337
Score = 59.3 bits (142), Expect = 3e-09
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +2
Query: 227 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 406
V V VGS F+ L L VV F C+++ + ++ ++P F++++
Sbjct: 13 VAVVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEA 72
Query: 407 HQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGSNE 568
+ IS+ PTFLFF+N ++D+ GA A L +K+++H+ + P +NE
Sbjct: 73 EAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNE 129
>gi|28076883|ref|NP_079687.2| thioredoxin family Trp26 [Mus
musculus]
Length = 222
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Frame = +2
Query: 629 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 790
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDS 100
Query: 791 GPKYVKIFINLPRSMDFEEAERSEPTQALELTED 892
P ++++ N+P+ M F++ ER EP Q L D
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPEQTFSLNRD 132
>gi|9903609|ref|NP_064297.1| thioredoxin 2; thioredoxin nuclear gene
encoding mitochondrial protein; thioredoxin,
mitochondrial [Mus musculus]
Length = 166
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSM-SNKYPQAVFLEVDVHQCQ 418
V PDFQ + + + + VV F + CGPC + P M + ++ + V +VD+
Sbjct: 64 VQDGPDFQDRVVNSETPV-VVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 122
Query: 419 GTAATNNISATPTFLFFRNKVRIDQYQG 502
A +SA PT L +N +D++ G
Sbjct: 123 DLAIEYEVSAVPTVLAIKNGDVVDKFVG 150
>gi|45598381|ref|NP_663342.2| thioredoxin domain containing 5;
endoplasmic reticulum protein ERp46 [Mus musculus]
Length = 417
Score = 41.6 bits (96), Expect = 7e-04
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Frame = +2
Query: 218 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 346
L+ + +P +P+ +P ELS L V +KF CG C +A
Sbjct: 151 LQTLNEEPATPEPEAEPPRALELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA 210
Query: 347 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 514
P + ++ ++ + V + +VD Q + + + PT L+FR+ ++DQY+G D
Sbjct: 211 PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLE 270
Query: 515 GLEEKI---KQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM 685
L + + +Q E P + E ++ P M P +K L E F++ + + +
Sbjct: 271 SLRDYVQSQQQGSEAAPETVEPSEAP--VMAAEPTGDKGTVLALTEK---SFEDTIAQGI 325
Query: 686 TFLE 697
TF++
Sbjct: 326 TFVK 329
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +2
Query: 278 GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT-- 451
G S V F CG C R+ P ++ + +KY +V V + TA ++ SA
Sbjct: 60 GIQSAAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTADSDVCSAQGV 119
Query: 452 ---PTFLFFRNKVRIDQYQG-ADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDL 601
PT FF+ +YQG D LE + Q L +P + E P ++L
Sbjct: 120 RGYPTLKFFKPGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRALEL 173
Score = 35.8 bits (81), Expect = 0.037
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 293 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YP---QAVFLEVDVHQCQGTAATNNISATPTF 460
+ VKF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 325 ITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTL 384
Query: 461 LFFRNKVRIDQYQG 502
L FR ++ ++ G
Sbjct: 385 LLFRGGEKVGEHNG 398
>gi|6679687|ref|NP_031978.1| glucose regulated protein; endoplasmic
reticulum protein; glucose regulated protein, 58 kDa;
phospholipase C, alpha [Mus musculus]
Length = 504
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 248 SDPDFQPELSGAGSR-LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT 424
+D +F+ +S GS L +V+F CG C R+AP + + + + +VD T
Sbjct: 31 TDENFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKIVPLAKVDCTANTNT 90
Query: 425 AATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPG 559
+S PT FR Y G + I HL+ G
Sbjct: 91 CNKYGVSGYPTLKIFRAGEEAGAYDGPRTA---DGIVSHLKKQAG 132
>gi|31712004|ref|NP_853622.1| thioredoxin domain containing 3
(spermatozoa) [Mus musculus]
Length = 470
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = +2
Query: 293 LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG--TAATNNISATPTFLF 466
L V+ CGPC + F + N+ + L V + T P FLF
Sbjct: 29 LTVIDVYQAWCGPCKAVQSLFRKLKNELNEDEILHFVVAEADNIVTLQPFRDKCEPVFLF 88
Query: 467 FRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNE 643
N I + QGA+A + K+ ++ E+ I G MD ++ + ++E
Sbjct: 89 SLNGKIIAKIQGANAPLINRKVITLID------EERKIVAGEMDRPQYVEIPLVDAIDE 141
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 100
effective length of database: 9,286,619
effective search space used: 2005909704
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)