Search to RefSeq (Human) database
Query= 20040204C-004579 (20040204C-004579) 20040204C-004579
(1171 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502899|ref|NP_001824.1| clathrin, light polypeptide A isofor... 366 e-101
Alignment gi|6005993|ref|NP_009027.1| clathrin, light polypeptide A isofor... 350 1e-96
Alignment gi|4502901|ref|NP_001825.1| clathrin, light polypeptide isoform ... 243 2e-64
Alignment gi|6005995|ref|NP_009028.1| clathrin, light polypeptide isoform ... 232 4e-61
Alignment gi|10835077|ref|NP_005074.1| U2(RNU2) small nuclear RNA auxiliar... 43 5e-04
Alignment gi|42660562|ref|XP_370899.2| similar to FLJ40113 protein [Homo s... 39 0.007
Alignment gi|4827046|ref|NP_005080.1| U2 small nuclear ribonucleoprotein a... 39 0.009
Alignment gi|4506467|ref|NP_002897.1| radixin [Homo sapiens] 38 0.012
Alignment gi|38044110|ref|NP_937824.1| similar to golgi autoantigen, golgi... 38 0.015
Alignment gi|42660534|ref|XP_377376.1| similar to hypothetical protein FLJ... 37 0.026
>gi|4502899|ref|NP_001824.1| clathrin, light polypeptide A isoform
a; clathrin light chain LCA [Homo sapiens]
Length = 218
Score = 366 bits (939), Expect = e-101
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>gi|6005993|ref|NP_009027.1| clathrin, light polypeptide A isoform
b; clathrin light chain LCA [Homo sapiens]
Length = 248
Score = 350 bits (898), Expect = 1e-96
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>gi|4502901|ref|NP_001825.1| clathrin, light polypeptide isoform a;
clathrin light chain LCB [Homo sapiens]
Length = 211
Score = 243 bits (620), Expect = 2e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|6005995|ref|NP_009028.1| clathrin, light polypeptide isoform b;
clathrin light chain LCB [Homo sapiens]
Length = 229
Score = 232 bits (591), Expect = 4e-61
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 702
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 703 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>gi|10835077|ref|NP_005074.1| U2(RNU2) small nuclear RNA auxiliary
factor binding protein-like; U2 small nuclear
ribonucleoprotein auxiliary factor, small subunit 1;
U2(RNU2) small nuclear RNA auxillary factor pseudogene
1; U2(RNU2) small nuclear RNA auxiliary factor
pseudogene 1 [Homo sapiens]
Length = 479
Score = 42.7 bits (99), Expect = 5e-04
Identities = 29/95 (30%), Positives = 46/95 (48%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 678
+ + E+ +KW EEQ RK + +WKE+ KE EE +Q E+ +K +A +
Sbjct: 95 KEKEEAAKKWLEEQ----------ERKLKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKM 144
Query: 679 AEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQA 783
++A ND+E S T W+ DF +A
Sbjct: 145 LDQA-ENDLENS---TTWQNPEPPVDFRVMEKDRA 175
>gi|42660562|ref|XP_370899.2| similar to FLJ40113 protein [Homo
sapiens]
Length = 463
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Frame = +1
Query: 454 GPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK--EKAIKELEEW 627
GP+ + + L+ E ES+ + + + E + L +R+QE + E+ ++E EE
Sbjct: 186 GPSKVEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEER 245
Query: 628 YARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKDVSRM 801
Q+E+L + + R EE +E PG E E V +L + + +Q + + R
Sbjct: 246 LREQEERLCEQEERLREQEERLCE--QEKLPGQERLLEEVEKLLEQERRQEEQERLLERE 303
Query: 802 R 804
R
Sbjct: 304 R 304
>gi|4827046|ref|NP_005080.1| U2 small nuclear ribonucleoprotein
auxiliary factor, small subunit-related protein 2;
U2AF35-related protein; U2 small nuclear
ribonucleoprotein auxiliary factor, small subunit 2
[Homo sapiens]
Length = 482
Score = 38.5 bits (88), Expect = 0.009
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +1
Query: 493 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 672
R++ E E K R+E+ ER K + +W+E+ KE EE ++ E+ +K +A
Sbjct: 87 RIKKEKEEAAKKRQEEQER---------KLKEQWEEQQRKEREEEEQKRQEKKEKEEALQ 137
Query: 673 RAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQA 783
+ ++A N++E GT W+ DF +A
Sbjct: 138 KMLDQA-ENELEN---GTTWQNPEPPVDFRVMEKDRA 170
>gi|4506467|ref|NP_002897.1| radixin [Homo sapiens]
Length = 583
Score = 38.1 bits (87), Expect = 0.012
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQKTKANN 672
+ E E I + +EE ERL+ ++ + K + E +E+ K EL++ R E+ ++ +
Sbjct: 334 EKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKER 393
Query: 673 RAAEEA 690
RAAEEA
Sbjct: 394 RAAEEA 399
>gi|38044110|ref|NP_937824.1| similar to golgi autoantigen, golgin
subfamily a, 2; SY11 protein [Homo sapiens]
Length = 274
Score = 37.7 bits (86), Expect = 0.015
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Frame = +1
Query: 484 QVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK--EKAIKELEEWYARQDEQLQK 657
+ + L+ E ES+ + + + E + L +R+QE + E+ ++E EE Q+E+L +
Sbjct: 7 ETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLCEQEERLCE 66
Query: 658 TKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKDVSRMR 804
+ R EE +E PG E E V +L + + +Q + + R R
Sbjct: 67 QEERLREQEERLCE--QEKLPGQERLLEEVEKLLEQERRQEEQERLLERER 115
>gi|42660534|ref|XP_377376.1| similar to hypothetical protein
FLJ36144 [Homo sapiens]
Length = 332
Score = 37.0 bits (84), Expect = 0.026
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +1
Query: 493 RLQSEPESIRKWREEQTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKA 666
R Q E + WR+E+ R + D R+QE E W+ E+ I+ELEE Q+E+L++ +
Sbjct: 214 REQEEKRQEKMWRQEKKMREQ--DEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEL 271
Query: 667 NNRAAE 684
++ A+
Sbjct: 272 KSQEAQ 277
Score = 35.0 bits (79), Expect = 0.098
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Frame = +1
Query: 484 QVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK--EKAIKELEEWYARQDEQLQK 657
+ DRL E +S+ + Q E++ + +QE + + E+ I+E EE RQ+E++++
Sbjct: 135 EADRLGKELQSVSAKLQAQEEKIREQEDKMWRQEEKIREQEEKIREQEEKMWRQEEKIRE 194
Query: 658 TKANNRAAEEAF------VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
+ EE + + EE W + ++ + + K +Q +++ R +
Sbjct: 195 QDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIRE 254
Query: 820 LKQ 828
L++
Sbjct: 255 LEE 257
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 103
effective length of database: 10,917,498
effective search space used: 3122404428
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-004579 (20040204C-004579) 20040204C-004579
(1171 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7949023|ref|NP_058040.1| clathrin, light polypeptide (Lca) [M... 347 8e-96
Alignment gi|30794164|ref|NP_083146.1| clathrin, light polypeptide (Lcb) [... 240 1e-63
Alignment gi|41322933|ref|NP_958792.1| plectin 1 isoform 7 [Mus musculus] 39 0.008
Alignment gi|38077811|ref|XP_128277.4| similar to plectin [Mus musculus] 39 0.008
Alignment gi|41322939|ref|NP_958795.1| plectin 1 isoform 10 [Mus musculus] 39 0.008
Alignment gi|41322937|ref|NP_958794.1| plectin 1 isoform 9 [Mus musculus] 39 0.008
Alignment gi|41322927|ref|NP_958789.1| plectin 1 isoform 4 [Mus musculus] 39 0.008
Alignment gi|41322929|ref|NP_958790.1| plectin 1 isoform 5 [Mus musculus] 39 0.008
Alignment gi|41322935|ref|NP_958793.1| plectin 1 isoform 8 [Mus musculus] 39 0.008
Alignment gi|41322941|ref|NP_958796.1| plectin 1 isoform 11 [Mus musculus] 39 0.008
>gi|7949023|ref|NP_058040.1| clathrin, light polypeptide (Lca) [Mus
musculus]
Length = 235
Score = 347 bits (890), Expect = 8e-96
Identities = 188/236 (79%), Positives = 193/236 (81%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFG----APAGPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFG AP GP+LGNGVAG EEDPAAAFLA +ESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGDPAGAPGGPALGNGVAGAGEEDPAAAFLAHEESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GRATRRAGGGP-DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 119
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 120 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFYKQPFADVIGYV 179
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVA LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 180 AAEEAFVNDIDESSPGTEWERVAPLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 235
>gi|30794164|ref|NP_083146.1| clathrin, light polypeptide (Lcb) [Mus
musculus]
Length = 211
Score = 240 bits (612), Expect = 1e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|41322933|ref|NP_958792.1| plectin 1 isoform 7 [Mus musculus]
Length = 4511
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1801 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1860
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1861 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1916
Query: 802 RS 807
RS
Sbjct: 1917 RS 1918
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2039 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2093
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2094 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2121
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1972 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2031
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2032 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2078
Query: 790 VSRMR 804
R++
Sbjct: 2079 AERLK 2083
>gi|38077811|ref|XP_128277.4| similar to plectin [Mus musculus]
Length = 3648
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 938 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 997
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 998 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1053
Query: 802 RS 807
RS
Sbjct: 1054 RS 1055
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1176 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 1230
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 1231 AQAQAAAEKLRKEAEQEAARRAQAEQAA 1258
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1109 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1168
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1169 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 1215
Query: 790 VSRMR 804
R++
Sbjct: 1216 AERLK 1220
>gi|41322939|ref|NP_958795.1| plectin 1 isoform 10 [Mus musculus]
Length = 4550
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1840 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1899
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1900 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1955
Query: 802 RS 807
RS
Sbjct: 1956 RS 1957
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2078 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2132
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2133 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2160
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2011 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2070
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2071 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2117
Query: 790 VSRMR 804
R++
Sbjct: 2118 AERLK 2122
>gi|41322937|ref|NP_958794.1| plectin 1 isoform 9 [Mus musculus]
Length = 4449
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1739 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1798
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1799 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1854
Query: 802 RS 807
RS
Sbjct: 1855 RS 1856
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1977 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2031
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2032 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2059
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1910 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1969
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1970 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2016
Query: 790 VSRMR 804
R++
Sbjct: 2017 AERLK 2021
>gi|41322927|ref|NP_958789.1| plectin 1 isoform 4 [Mus musculus]
Length = 4449
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1739 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1798
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1799 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1854
Query: 802 RS 807
RS
Sbjct: 1855 RS 1856
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1977 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2031
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2032 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2059
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1910 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1969
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1970 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2016
Query: 790 VSRMR 804
R++
Sbjct: 2017 AERLK 2021
>gi|41322929|ref|NP_958790.1| plectin 1 isoform 5 [Mus musculus]
Length = 4449
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1739 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1798
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1799 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1854
Query: 802 RS 807
RS
Sbjct: 1855 RS 1856
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1977 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2031
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2032 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2059
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1910 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1969
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1970 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2016
Query: 790 VSRMR 804
R++
Sbjct: 2017 AERLK 2021
>gi|41322935|ref|NP_958793.1| plectin 1 isoform 8 [Mus musculus]
Length = 4543
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1833 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1892
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1893 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1948
Query: 802 RS 807
RS
Sbjct: 1949 RS 1950
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2071 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2125
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2126 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2153
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2004 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2063
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2064 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2110
Query: 790 VSRMR 804
R++
Sbjct: 2111 AERLK 2115
>gi|41322941|ref|NP_958796.1| plectin 1 isoform 11 [Mus musculus]
Length = 4543
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1833 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1892
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1893 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1948
Query: 802 RS 807
RS
Sbjct: 1949 RS 1950
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2071 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2125
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2126 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2153
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2004 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2063
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2064 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2110
Query: 790 VSRMR 804
R++
Sbjct: 2111 AERLK 2115
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 102
effective length of database: 9,234,221
effective search space used: 2650221427
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)