Search to RefSeq (Human) database
Query= 20040204S-004895 (20040204S-004895) 20040204S-004895
(1190 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 96 6e-20
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 84 1e-16
Alignment gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo sapi... 47 2e-05
Alignment gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo sapi... 47 2e-05
Alignment gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapi... 47 3e-05
Alignment gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapi... 44 2e-04
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposi... 42 8e-04
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 42 0.001
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 40 0.002
Alignment gi|21361602|ref|NP_061849.2| solute carrier family 38, member 2;... 30 3.2
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 95.5 bits (236), Expect = 6e-20
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo
sapiens]
Length = 210
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/83 (39%), Positives = 41/83 (49%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAG+ ++E VK KIQVLQQQAD+AE+RA L E
Sbjct: 1 MAGIATMEEVKCKIQVLQQQADDAEERAERLQFE-------------------------- 34
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERL T L ++E A
Sbjct: 35 EELDHAQERLTTALQKLEEEEKA 57
>gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo
sapiens]
Length = 210
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/83 (39%), Positives = 41/83 (49%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAG+ ++E VK KIQVLQQQAD+AE+RA L E
Sbjct: 1 MAGIATMEEVKCKIQVLQQQADDAEERAERLQFE-------------------------- 34
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERL T L ++E A
Sbjct: 35 EELDHAQERLTTALQKLEEEEKA 57
>gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo
sapiens]
Length = 215
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +3
Query: 198 AHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAHERLATRL 338
A GL RELDG VA L RRIQL +E+LD A ERLAT L
Sbjct: 17 AQGLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATAL 63
>gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo
sapiens]
Length = 292
Score = 43.9 bits (102), Expect = 2e-04
Identities = 30/62 (48%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 156 IQVLQQQADEAED---RAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAHERL 326
IQ Q Q A D R GL REL G VA L RRIQL +E LD A ERL
Sbjct: 55 IQTEQGQDSRAWDKKVRIQGLQRELGGECERREKAKGDVAALNRRIQLVEEKLDRAQERL 114
Query: 327 AT 332
AT
Sbjct: 115 AT 116
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposis
multiplex congenital, distal, type 1 [Homo sapiens]
Length = 284
Score = 42.0 bits (97), Expect = 8e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 138 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 317
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 318 ERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 135 LEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLA 314
+EA+K+K+Q+L+ + A DRA E +A + ++++ +++LD A
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 315 HERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 62 QERLATALQKLEEAEKA 78
>gi|21361602|ref|NP_061849.2| solute carrier family 38, member 2;
amino acid transporter 2; system A amino acid
transporter [Homo sapiens]
Length = 506
Score = 30.0 bits (66), Expect = 3.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -1
Query: 455 SGKYGEGHNSKQKGVAIFIIAVSAIWIY-MFSGSLILKNRQAGGQSFMSQIQVLISELDA 279
SG G + G+A+FII ++ + I+ ++S L+LK GG Q+
Sbjct: 87 SGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLG-------- 138
Query: 278 ASERCYFPFGFLTPLALAVQLPVQAVRAI 192
Y FG + LA + + +Q + A+
Sbjct: 139 -----YKAFGLVGKLAASGSITMQNIGAM 162
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 103
effective length of database: 10,917,498
effective search space used: 3198826914
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204S-004895 (20040204S-004895) 20040204S-004895
(1190 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus muscu... 91 1e-18
Alignment gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus] 64 2e-10
Alignment gi|38086740|ref|XP_145641.2| similar to High mobility group prot... 55 6e-08
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 42 5e-04
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha tropomy... 42 0.001
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2; ... 42 0.001
Alignment gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide; ... 33 0.32
Alignment gi|6679733|ref|NP_032003.1| coagulation factor VIII; Factor VIII... 30 3.6
Alignment gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4; q... 30 3.6
Alignment gi|15150793|ref|NP_085032.1| pre-B-cell leukemia transcription f... 30 3.6
>gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus
musculus]
Length = 248
Score = 90.9 bits (224), Expect = 1e-18
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAGLNSLEAVKRKIQ LQQQAD+AEDRA GL RELDG A L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A E+LAT L ++ A
Sbjct: 61 EELDRAQEQLATALQNLEEAEKA 83
>gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus]
Length = 275
Score = 63.9 bits (154), Expect = 2e-10
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAG +++AVK IQVLQQQAD+A++RA L +EL+G VA L RIQ +
Sbjct: 1 MAGSTTIKAVKLMIQVLQQQADDAKERAECLEQELEGERQAWEQAEAEVASLNCRIQWVE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
LD A ERLAT L ++ A
Sbjct: 61 GKLDRAXERLATALQKLEEAEKA 83
>gi|38086740|ref|XP_145641.2| similar to High mobility group protein
1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)
[Mus musculus]
Length = 387
Score = 55.5 bits (132), Expect = 6e-08
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQ-ADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLA 293
MA +++ VK K+QVLQQQ AD+ E+RA E++G V L R+QL
Sbjct: 1 MARSTAIKVVKHKVQVLQQQQADDVEERAMQFQLEVEGERQAWEQAEAEVTSLNCRVQLV 60
Query: 294 DEDLDLAHERLATRLPIFKDERPAEHVNPYSTDRD 398
+E+LD A E LAT L ++ A T+RD
Sbjct: 61 EEELDYAQECLATALQKLEEAEKAAD----ETERD 91
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 42.4 bits (98), Expect = 5e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 138 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 317
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 318 ERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha
tropomyosin [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2;
tropomyosin 5 [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L +++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide;
protein-glutamine-gamma-glutamyltransferase;
transglutaminase type 1; TG K; TGase 1; K polypeptide
[Mus musculus]
Length = 815
Score = 33.1 bits (74), Expect = 0.32
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = -2
Query: 160 WILRFTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSRAP---APEPFSSKT 2
W T S E P R R+ GGRS AR C C SC +R PEP S++
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEPSGSRS 73
>gi|6679733|ref|NP_032003.1| coagulation factor VIII; Factor VIII [Mus
musculus]
Length = 2319
Score = 29.6 bits (65), Expect = 3.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 482 IRKVDWYSKSGKYGEGHNSKQKGVAIFIIAVSAIWIYMFSGSLILKNR 339
I D YS+ K G + +QK FI AV +W Y S S +L+NR
Sbjct: 1663 IEDFDIYSEDIKQGP-RSFQQKTRHYFIAAVERLWDYGMSTSHVLRNR 1709
>gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4;
quivering; lumbosacral neuroaxonal dystrophy; neuroaxonal
dystrophy [Mus musculus]
Length = 2561
Score = 29.6 bits (65), Expect = 3.6
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 127 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP 17
RP RR R G GG S R S + APAP P
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPP 2410
>gi|15150793|ref|NP_085032.1| pre-B-cell leukemia transcription
factor 4 [Mus musculus]
Length = 74
Score = 29.6 bits (65), Expect = 3.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 78 PPLPAARCVRLRAMAGLNSLEAVKRKIQVLQQQADEAEDRAHGLH 212
PP PA R + A G ++ + +++ + + Q DEA+ R H L+
Sbjct: 9 PPQPAPRRLPTTAPLGHDTSDVLQQIMAITDQSLDEAQARKHALN 53
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 102
effective length of database: 9,234,221
effective search space used: 2714860974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)