Search to RefSeq (Human) database
Query= 20040204S-017666 (20040204S-017666) 20040204S-017666
(570 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 197 4e-51
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposi... 191 2e-49
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 115 2e-26
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 92 2e-19
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 85 3e-17
Alignment gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapi... 83 1e-16
Alignment gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapi... 82 3e-16
Alignment gi|11024712|ref|NP_060003.1| myosin, heavy polypeptide 4, skelet... 45 2e-05
Alignment gi|21735548|ref|NP_009117.2| centrosomal protein 2; centrosome a... 45 4e-05
Alignment gi|7669506|ref|NP_005954.2| myosin, heavy polypeptide 1, skeleta... 45 4e-05
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDEL---- 238
E + +K+ +++ D E A +RAE +E + EE+ + + + L K L ED+
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTL----KALMAAEDKYSQKE 218
Query: 239 DLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
D Y E +K + L+ + +A ++ V L + I +DE + + + L+ A
Sbjct: 219 DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposis
multiplex congenital, distal, type 1 [Homo sapiens]
Length = 284
Score = 191 bits (486), Expect = 2e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 42.0 bits (97), Expect = 3e-04
Identities = 31/115 (26%), Positives = 55/115 (47%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E + +RAE AES EE+ K V L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K +E L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNA 277
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 115 bits (288), Expect = 2e-26
Identities = 73/167 (43%), Positives = 98/167 (58%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ EDEL
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQL--------------EDEL--- 44
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
AA+ ++++ +DE R+QERL+TAL LEEAE+AA
Sbjct: 45 -------------------------AAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 126
Score = 43.5 bits (101), Expect = 9e-05
Identities = 30/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +++ D E +RAE AES EE+ K V L L + + + D Y
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K + L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHA 236
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 92.4 bits (228), Expect = 2e-19
Identities = 51/125 (40%), Positives = 79/125 (63%)
Frame = +2
Query: 194 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 373
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 374 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 553
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 554 KEAAR 568
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 3e-07
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 425 ADATQRR 445
+ R+
Sbjct: 126 YEEVARK 132
Score = 35.8 bits (81), Expect = 0.019
Identities = 26/103 (25%), Positives = 52/103 (50%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E A +RAE +E EE+ K V L L + ++ D Y
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 379
E +K + L+ + +A ++ VA L + I +++ +++E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 85.1 bits (209), Expect = 3e-17
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +2
Query: 209 KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLS 388
+K++ + + D E + Q +E ++ +VA+LN+RIQL ++E R+QERL+
Sbjct: 12 RKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLA 71
Query: 389 TALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
TAL LEEAE+AAD ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 72 TALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Score = 55.8 bits (133), Expect = 2e-08
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E+ L+++++ E+ELD
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R L +EK QE +L A EEA++
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENR-ALKDEEKMELQEIQLKEAKHIAEEADRK 125
Query: 425 --------------ADATQRRTKVTKTRALYESEKMVIHDKQL-----AEDK-STADDAY 544
+ T+ R ++ ++R E++ + D+ L AE+K S +D Y
Sbjct: 126 YEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185
Query: 545 D 547
+
Sbjct: 186 E 186
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHL-------HKKLKGTE 229
E + +K+ +++ D E +RAE AES + +E+ + + + L L +K E
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 230 DELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLE 409
+E+ + ++ LK+A+ E + + + + L +++ ++E +Q L L +L
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Query: 410 E 412
E
Sbjct: 247 E 247
>gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo
sapiens]
Length = 292
Score = 82.8 bits (203), Expect = 1e-16
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 308 SKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEK 487
+KGDVAALN+RIQL +++ R+QERL+TA LEEAE+AAD ++R KV + RA+ + EK
Sbjct: 89 AKGDVAALNRRIQLVEEKLDRAQERLATAPQKLEEAEKAADESERGMKVIENRAMKDEEK 148
Query: 488 MVIHDKQLAEDKSTADDAYDHFKEAAR 568
M I + QL E K A++A + E AR
Sbjct: 149 MEIQELQLKEAKHIAEEADRKYWEVAR 175
Score = 31.6 bits (70), Expect = 0.36
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 134 EQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENLKDAQE*LEL--SYMKASD 307
E+AE + +E KC + EEL ++ LK E + YSE +E ++L +K ++
Sbjct: 185 ERAEERVEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAE 244
Query: 308 SKGDVA 325
++ + A
Sbjct: 245 TRAEFA 250
>gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo
sapiens]
Length = 215
Score = 81.6 bits (200), Expect = 3e-16
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +2
Query: 308 SKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEK 487
++GDVA LN+RIQL ++E R+QERL+TAL LEEAE+ AD ++R KV + RA+ + EK
Sbjct: 34 AEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESERGMKVIENRAMKDEEK 93
Query: 488 MVIHDKQLAEDKSTADDAYDHFKEAAR 568
M I + QL E K A+ A +++ AR
Sbjct: 94 MEIQEMQLKEAKHIAEKADRKYEKVAR 120
>gi|11024712|ref|NP_060003.1| myosin, heavy polypeptide 4, skeletal
muscle [Homo sapiens]
Length = 1939
Score = 45.4 bits (106), Expect = 2e-05
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADALADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
D T K+TK +AL E+ + + D Q+ EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQMEEDK 1020
Score = 31.6 bits (70), Expect = 0.36
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Frame = +2
Query: 59 CPAMEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLH--------- 208
C +E K+K++ LKL +E+ +D E+DK+ EK K+ E+++L
Sbjct: 1049 CMDLERAKRKLEGDLKLAQESTMD----TENDKQQLNEKLKKKEFEMSNLQGKIEDEQAL 1104
Query: 209 -----KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 373
KK+K EL E L++ E S KA + D++ R
Sbjct: 1105 AMQLQKKIK----ELQARIEELEEEIEAERASRAKAEKQRSDLS--------------RE 1146
Query: 374 QERLSTALPNLEEAEQAADATQRRTKVTKTR-ALYESEKMVIHDKQLAEDKSTA 532
E +S E E+A AT + ++ K R A ++ + + + L + + A
Sbjct: 1147 LEEIS------ERLEEAGGATSAQIELNKKREAEFQKMRRDLEESTLQHEATAA 1194
>gi|21735548|ref|NP_009117.2| centrosomal protein 2; centrosome
associated protein; centrosomal Nek2-associated protein 1
[Homo sapiens]
Length = 2442
Score = 44.7 bits (104), Expect = 4e-05
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENA-----IDRAEQAES----DKKAAEEKCKQVGEELTHLHKKL 217
A++ + Q+L+L++EN ++ AEQA + D AE++ + + E+ THL +L
Sbjct: 609 ALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 218 KGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTAL 397
+ E+ +L+D QE E K S+S+ A +++ E R +E L+ A+
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQEEVLARAV 728
Query: 398 PNLEEAEQAADATQRRTKVTK 460
E + A + R + +
Sbjct: 729 QEKEALVREKAALEVRLQAVE 749
Score = 30.4 bits (67), Expect = 0.81
Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
EA+ +K L+ + A + + ++D + +E+ +++ ++L+ + + +L+
Sbjct: 655 EALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLH 714
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQER---LSTALPNLEEAEQ 421
+ K +E L + + + AAL R+Q + ++ E+ LS+A LE +
Sbjct: 715 QEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLF 774
Query: 422 AADATQRRTKVTK 460
A +VTK
Sbjct: 775 EAQQQNSVIEVTK 787
>gi|7669506|ref|NP_005954.2| myosin, heavy polypeptide 1, skeletal
muscle, adult; myosin heavy chain IIx/d [Homo sapiens]
Length = 1939
Score = 44.7 bits (104), Expect = 4e-05
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
D T K+TK +AL E+ + + D Q EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1020
Score = 37.0 bits (84), Expect = 0.009
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
+E K+K++ LKL +E+A+D E+DK+ +EK K+ E++ L K+ EDE L
Sbjct: 1052 LERAKRKLEGDLKLAQESAMD----IENDKQQLDEKLKKKEFEMSGLQSKI---EDEQAL 1104
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 412
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1105 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1153
Query: 413 AEQAADATQRRTKVTKTRALYESEKM 490
E+A AT + ++ K R E +KM
Sbjct: 1154 LEEAGGATSAQIEMNKKREA-EFQKM 1178
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 95
effective length of database: 11,136,994
effective search space used: 1046877436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204S-017666 (20040204S-017666) 20040204S-017666
(570 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha tropomy... 197 3e-51
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 193 6e-50
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2; ... 190 5e-49
Alignment gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus muscu... 90 1e-18
Alignment gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus] 64 4e-11
Alignment gi|38086740|ref|XP_145641.2| similar to High mobility group prot... 64 6e-11
Alignment gi|38091417|ref|XP_354617.1| similar to myosin heavy chain 2b [M... 44 6e-05
Alignment gi|18859641|ref|NP_542766.1| myosin, heavy polypeptide 7, cardia... 44 6e-05
Alignment gi|38091413|ref|XP_354615.1| myosin, heavy polypeptide 1, skelet... 44 8e-05
Alignment gi|6681147|ref|NP_031861.1| dynactin 1; dynactin 1, retrograde a... 44 8e-05
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha
tropomyosin [Mus musculus]
Length = 284
Score = 197 bits (501), Expect = 3e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +++ D E A +RAE +E EE+ K V L L + + + D Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRI-QLPQDEKHRSQERLS 388
E +K + L+ + +A ++ V L + I L + H +E LS
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLS 269
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 193 bits (490), Expect = 6e-50
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/115 (26%), Positives = 55/115 (47%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E + +RAE AES EE+ K V L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K +E L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNA 277
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2;
tropomyosin 5 [Mus musculus]
Length = 284
Score = 190 bits (482), Expect = 5e-49
Identities = 101/167 (60%), Positives = 131/167 (78%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHL-------HKKLKGTE 229
E + +K+ +++ D E +RAE AES + +E+ + + + L L +K E
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 230 DELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLE 409
+E+ + ++ LK+A+ E + + + + L +++ ++E +Q L L +L
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
Query: 410 E 412
E
Sbjct: 283 E 283
>gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus
musculus]
Length = 248
Score = 89.7 bits (221), Expect = 1e-18
Identities = 50/125 (40%), Positives = 78/125 (62%)
Frame = +2
Query: 194 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 373
L + +K++ + + D + + Q L+ + ++GD AALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 374 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 553
QE+L+TAL NLEEAE+AAD ++R KV + RA+ + EKM I + QL E K D+A +
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 554 KEAAR 568
+E AR
Sbjct: 127 EEVAR 131
Score = 49.7 bits (117), Expect = 1e-06
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
++EA+K+K+Q L+ ++A DRA+ + + E+ ++ + L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDR 65
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R + +E++ L+EA+
Sbjct: 66 AQEQLATALQNLEEAEKAADESERGMKVIENRAM-------KDEEKMEILEMQLKEAKHI 118
Query: 425 ADATQRR-TKVTKTRALYESE 484
D R+ +V + + E E
Sbjct: 119 TDEADRKYEEVARKLVILEGE 139
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/103 (23%), Positives = 52/103 (50%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + + A +RAE +E EE+ K V L L + ++ D Y
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 379
E +K + L+ + +A ++ V+ L + I +++ +++E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
>gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus]
Length = 275
Score = 64.3 bits (155), Expect = 4e-11
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 227 EDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNL 406
+ + D E + ++ LE ++ +VA+LN RIQ + + R+ ERL+TAL L
Sbjct: 18 QQQADDAKERAECLEQELEGERQAWEQAEAEVASLNCRIQWVEGKLDRAXERLATALQKL 77
Query: 407 EEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAA 565
EEAE+AAD +++ KV + R L + EKM + + QL E ++A ++E A
Sbjct: 78 EEAEKAADESEKGMKVIEIRGLKDEEKMELQEFQLKEAMHIVEEADRVYEEVA 130
Score = 47.8 bits (112), Expect = 4e-06
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
++A+K +Q+L+ ++A +RAE E + + + +Q E+ L+ +++ E +LD
Sbjct: 7 IKAVKLMIQVLQQQADDAKERAECLEQELEGERQAWEQAEAEVASLNCRIQWVEGKLDRA 66
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R L +EK QE +L A+ +EEA++
Sbjct: 67 XERLATALQKLEEAEKAADESEKGMKVIEIR-GLKDEEKMELQEFQLKEAMHIVEEADRV 125
Query: 425 ADATQRRTKVTKTRALYESEKMVIHDKQLAEDKS 526
+ + + + E+ + + LAE +S
Sbjct: 126 YEEVAHKLVIIEGEWESMEERARLAEDPLAEARS 159
>gi|38086740|ref|XP_145641.2| similar to High mobility group protein
1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)
[Mus musculus]
Length = 387
Score = 63.9 bits (154), Expect = 6e-11
Identities = 41/118 (34%), Positives = 63/118 (53%)
Frame = +2
Query: 206 HKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERL 385
HK + + D E Q +E ++ +V +LN R+QL ++E +QE L
Sbjct: 12 HKVQVLQQQQADDVEERAMQFQLEVEGERQAWEQAEAEVTSLNCRVQLVEEELDYAQECL 71
Query: 386 STALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKE 559
+TAL LEEAE+AAD T+R + AL + E M + + +L E K TA++A +F E
Sbjct: 72 ATALQKLEEAEKAADETERDMXAIENLALKDEEMMELQEMKLKEAKHTAEEADRNFFE 129
Score = 32.3 bits (72), Expect = 0.18
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSEN 256
++++ +L+ E EQAE++ +T L+ +++ E+ELD E
Sbjct: 25 VEERAMQFQLEVEGERQAWEQAEAE--------------VTSLNCRVQLVEEELDYAQEC 70
Query: 257 LKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQ 421
L A + LE + A +++ D+ A+ + + L +E QE +L A EEA++
Sbjct: 71 LATALQKLEEAEKAADETERDMXAI-ENLALKDEEMMELQEMKLKEAKHTAEEADR 125
>gi|38091417|ref|XP_354617.1| similar to myosin heavy chain 2b [Mus
musculus]
Length = 727
Score = 43.9 bits (102), Expect = 6e-05
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 518 LEEKMVALMQEK-NDLQLQVQAEADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEE 576
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ E+
Sbjct: 577 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVKNL------TEE 626
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
A + K+TK +AL E+ + + D Q EDK
Sbjct: 627 MAGLDENIAKLTKEKKALQEAHQQTLDDLQAEEDK 661
Score = 26.9 bits (58), Expect = 7.7
Identities = 26/104 (25%), Positives = 49/104 (47%)
Frame = +2
Query: 224 TEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPN 403
TE E+ E+ + A+E L S K + + + AL Q EK+ Q ++
Sbjct: 490 TEKEMANMKEDFEKAKEDLAKSEAKRKELEEKMVALMQ-------EKNDLQLQVQA---- 538
Query: 404 LEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 535
EA+ ADA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 539 --EADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEEINAE 580
>gi|18859641|ref|NP_542766.1| myosin, heavy polypeptide 7, cardiac
muscle, beta; myosin heavy chain, cardiac muscle, fetal
[Mus musculus]
Length = 1935
Score = 43.9 bits (102), Expect = 6e-05
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLKGTEDELDLYSE 253
+++KM L L ++N + QAE D A AEE+C Q+ + L K+K + L+ E
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Query: 254 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 433
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 985
Query: 434 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
+ K+TK +AL E+ + + D Q EDK
Sbjct: 986 DEIIVKLTKEKKALQEAHQQALDDLQAEEDK 1016
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Frame = +2
Query: 107 DKENAIDRA----EQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENLKDAQE 274
DK N + +A EQ D + + E+ K+V +L +KL+G +L L E++ D +
Sbjct: 1015 DKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEG---DLKLTQESIMDLEN 1071
Query: 275 *LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQ-RRTK 451
+ + ++ ALN RI+ Q + Q++L +EE E+ +A + R K
Sbjct: 1072 DKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAK 1131
Query: 452 VTKTRA 469
V K R+
Sbjct: 1132 VEKLRS 1137
Score = 33.9 bits (76), Expect = 0.063
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 259
+K+M +K + D E++E+ +K EEK + +E L +++ +D NL
Sbjct: 846 EKEMATMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 898
Query: 260 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 418
DA+E + + V + +R++ ++ +K + ++ S ++++ E
Sbjct: 899 ADAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 958
Query: 419 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 544
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 959 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIVKLTKEKKALQEAH 1003
Score = 30.8 bits (68), Expect = 0.53
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVGEELTHLHKKLKGTEDE 235
ME K+ + + ++D ++ ++ KK E ++ +L+H ++ + +
Sbjct: 1583 MEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 236 LDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
+ LKD Q L+ + D K ++A + +R L Q E + + + + A
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLA 1702
Query: 416 EQAADATQRRTKV---TKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEA 562
EQ T R ++ T + + +KM D L++ ++ ++A + A
Sbjct: 1703 EQELIETSERVQLLHSQNTSLINQKKKM---DADLSQLQTEVEEAVQECRNA 1751
>gi|38091413|ref|XP_354615.1| myosin, heavy polypeptide 1, skeletal
muscle, adult [Mus musculus]
Length = 1942
Score = 43.5 bits (101), Expect = 8e-05
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + Q+E+D A AEE+C Q+ + L K+K EDE +
Sbjct: 880 LEEKMVALMQEK-NDLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 938
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 939 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 990
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
D T K+TK +AL E+ + + D Q EDK
Sbjct: 991 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1023
Score = 37.0 bits (84), Expect = 0.007
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E+++L K+ EDE L
Sbjct: 1055 LERAKRKLEGDLKLAQESTMD----VENDKQQLDEKLKKKEFEMSNLQSKI---EDEQAL 1107
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 412
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1108 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1156
Query: 413 AEQAADATQRRTKVTKTRALYESEKM 490
E+A AT + ++ K R E +KM
Sbjct: 1157 LEEAGGATSAQIEMNKKREA-EFQKM 1181
Score = 27.7 bits (60), Expect = 4.5
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 LKDAQE*LELSYMKASDSKGD---VAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
LK A+ E++ MK K A +R +L + QE+ L EA+ A
Sbjct: 847 LKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKMVALMQEKNDLQLQVQSEADSLA 906
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 535
DA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 907 DAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAE 942
>gi|6681147|ref|NP_031861.1| dynactin 1; dynactin 1, retrograde
axonal transport [Mus musculus]
Length = 1281
Score = 43.5 bits (101), Expect = 8e-05
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Frame = +2
Query: 89 MQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKL--KGTE--------DEL 238
++M LDKE A +RAE + + +A +E+ ++ +L L ++ KG++ +L
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQL 363
Query: 239 DLYSENLKDAQE*LELSYMKASDSKGDV------AALNQRIQLPQDEKHRSQERLSTALP 400
+ + LKDA + + + +S+ + V NQ +++ + ++ R QE LS A
Sbjct: 364 EEQNARLKDAL--VRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAES 421
Query: 401 NLEEAEQAADA---TQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
++E ++ DA + ++ R L EK V ++ D ++ D +E AR
Sbjct: 422 TIDELKEQVDAALGAEEMVEMLTDRNLNLEEK-VRELRETVGDLEAMNEMNDXLQENAR 479
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 94
effective length of database: 9,443,813
effective search space used: 897162235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)