Search to RefSeq (Human) database
Query= 20040204S-018794 (20040204S-018794) 20040204S-018794
(366 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 59 7e-10
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 38 0.001
Alignment gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapi... 36 0.004
Alignment gi|40353204|ref|NP_066022.1| spectrin, beta, non-erythrocytic 4 ... 33 0.032
Alignment gi|13435161|ref|NP_079489.1| spectrin, beta, non-erythrocytic 4 ... 33 0.032
Alignment gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapi... 30 0.21
Alignment gi|22749045|ref|NP_689715.1| hypothetical protein FLJ32154 [Homo... 30 0.27
Alignment gi|40068487|ref|NP_954572.1| von Willebrand factor A domain-rela... 30 0.27
Alignment gi|40068485|ref|NP_073745.2| von Willebrand factor A domain-rela... 30 0.27
Alignment gi|42659232|ref|XP_379660.1| hypothetical protein XP_379660 [Hom... 29 0.46
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 58.5 bits (140), Expect = 7e-10
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGDV I LV
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 306 ED 311
E+
Sbjct: 61 EE 62
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAG+ ++EAV+RKI LQ E++G+R E+AE +V + I LV
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 306 ED 311
E+
Sbjct: 61 EE 62
>gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo
sapiens]
Length = 215
Score = 36.2 bits (82), Expect = 0.004
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = +3
Query: 213 GLQWELDGDRERWEKAEGDVPTFIGCILLVVED 311
GLQ ELDG RE EKAEGDV T I LV E+
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEE 51
>gi|40353204|ref|NP_066022.1| spectrin, beta, non-erythrocytic 4 [Homo
sapiens]
Length = 2564
Score = 33.1 bits (74), Expect = 0.032
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 136 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 17
RP RR R G GG S R S + APAP P PT
Sbjct: 2377 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2416
>gi|13435161|ref|NP_079489.1| spectrin, beta, non-erythrocytic 4 [Homo
sapiens]
Length = 2559
Score = 33.1 bits (74), Expect = 0.032
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 136 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 17
RP RR R G GG S R S + APAP P PT
Sbjct: 2372 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2411
>gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo
sapiens]
Length = 292
Score = 30.4 bits (67), Expect = 0.21
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 213 GLQWELDGDRERWEKAEGDVPTFIGCILLVVE 308
GLQ EL G+ ER EKA+GDV I LV E
Sbjct: 74 GLQRELGGECERREKAKGDVAALNRRIQLVEE 105
>gi|22749045|ref|NP_689715.1| hypothetical protein FLJ32154 [Homo
sapiens]
Length = 144
Score = 30.0 bits (66), Expect = 0.27
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 148 SRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGR 5
+R+ RP R G G S C + + P LP PGGR
Sbjct: 7 TRQQRPPQGTEAGTRGGGPGRLSPERCRLLDSALQLQGPASLPQPGGR 54
>gi|40068487|ref|NP_954572.1| von Willebrand factor A domain-related
protein isoform 2 [Homo sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 0.27
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 154 TASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
T + L P A T AA GR + L S K+C+ P P P P P
Sbjct: 176 TTLQGLAPGTAYLVTVTAAFRSGRESAL-SAKACTPDGPRPRPRPVP 221
>gi|40068485|ref|NP_073745.2| von Willebrand factor A domain-related
protein isoform 1 [Homo sapiens]
Length = 445
Score = 30.0 bits (66), Expect = 0.27
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 154 TASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
T + L P A T AA GR + L S K+C+ P P P P P
Sbjct: 388 TTLQGLAPGTAYLVTVTAAFRSGRESAL-SAKACTPDGPRPRPRPVP 433
>gi|42659232|ref|XP_379660.1| hypothetical protein XP_379660 [Homo
sapiens]
Length = 509
Score = 29.3 bits (64), Expect = 0.46
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -3
Query: 151 ASRELRPAMARRRTQ-RAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGG 8
A LRPA A R Q A + GR AR C C P PGG
Sbjct: 388 AGGSLRPARAVRSEQGEARATAGREARACVCARRWGDGDPRPPCGRPGG 436
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 97
effective length of database: 11,082,120
effective search space used: 265970880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204S-018794 (20040204S-018794) 20040204S-018794
(366 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus muscu... 56 4e-09
Alignment gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus] 34 0.012
Alignment gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4; q... 33 0.027
Alignment gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide; ... 32 0.078
Alignment gi|38086740|ref|XP_145641.2| similar to High mobility group prot... 30 0.17
Alignment gi|22122755|ref|NP_666317.1| cDNA sequence BC032200 [Mus musculus] 29 0.51
Alignment gi|41235781|ref|NP_958762.1| Similar to hypothetical protein FLJ... 28 1.1
Alignment gi|40804757|ref|NP_665823.2| Ran-binding protein 10 [Mus musculus] 28 1.1
Alignment gi|7305475|ref|NP_038690.1| sema domain, transmembrane domain (T... 28 1.1
Alignment gi|21553305|ref|NP_083686.1| BCL2-like 12 (proline rich) [Mus mu... 28 1.1
>gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus
musculus]
Length = 248
Score = 55.8 bits (133), Expect = 4e-09
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGD I L+
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 306 ED 311
E+
Sbjct: 61 EE 62
>gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus]
Length = 275
Score = 34.3 bits (77), Expect = 0.012
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAG +++AV+ I L+ EL+G+R+ WE+AE +V + + C + V
Sbjct: 1 MAGSTTIKAVKLMIQVLQQQADDAKERAECLEQELEGERQAWEQAEAEVAS-LNCRIQWV 59
Query: 306 E 308
E
Sbjct: 60 E 60
>gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4;
quivering; lumbosacral neuroaxonal dystrophy; neuroaxonal
dystrophy [Mus musculus]
Length = 2561
Score = 33.1 bits (74), Expect = 0.027
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 136 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 17
RP RR R G GG S R S + APAP P PT
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2413
>gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide;
protein-glutamine-gamma-glutamyltransferase;
transglutaminase type 1; TG K; TGase 1; K polypeptide
[Mus musculus]
Length = 815
Score = 31.6 bits (70), Expect = 0.078
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = -3
Query: 169 WILRLTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSRAP---APEP 26
W T S E P R R+ GGRS AR C C SC +R PEP
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEP 68
>gi|38086740|ref|XP_145641.2| similar to High mobility group protein
1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)
[Mus musculus]
Length = 387
Score = 30.4 bits (67), Expect = 0.17
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 219 QWELDGDRERWEKAEGDVPTFIGCILLVVED 311
Q E++G+R+ WE+AE +V T + C + +VE+
Sbjct: 33 QLEVEGERQAWEQAEAEV-TSLNCRVQLVEE 62
>gi|22122755|ref|NP_666317.1| cDNA sequence BC032200 [Mus musculus]
Length = 926
Score = 28.9 bits (63), Expect = 0.51
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = -3
Query: 166 ILRLTASRELRPAMARRRTQRAAG-------SGGRSARLCSCKSCSSRAPAPEPLPTP 14
I R A LRP +A R AAG SG + + S S APA E L TP
Sbjct: 58 IERFRARGGLRPLLALLRRTAAAGPAPSQAASGSAPSSVASAGSTPGHAPAAESLLTP 115
>gi|41235781|ref|NP_958762.1| Similar to hypothetical protein
FLJ32658 [Mus musculus]
Length = 578
Score = 27.7 bits (60), Expect = 1.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 169 WILRLTASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 2
WI+ L S +L R+ ++ S G S+ L + P PEP P P P
Sbjct: 365 WIMALPPSLDLEIQAIRQ--EQDVASAGLSSPLYGVRQWEEVEPEPEPEPEPEPEP 418
>gi|40804757|ref|NP_665823.2| Ran-binding protein 10 [Mus musculus]
Length = 648
Score = 27.7 bits (60), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +3
Query: 57 LLQEQSRAERPPL-----PAARCVRLRAMAGLNSLEAVR 158
+L+ Q+ ++PPL A+ C+RL A AGL S R
Sbjct: 604 ILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFAR 642
>gi|7305475|ref|NP_038690.1| sema domain, transmembrane domain (TM),
and cytoplasmic domain, (semaphorin) 6B [Mus musculus]
Length = 886
Score = 27.7 bits (60), Expect = 1.1
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -3
Query: 139 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 2
L PA A + Q A G S RLC+ +SC + P PL TP P
Sbjct: 754 LAPARASEQPQVPAEPGPES-RLCAPRSCRASHPGDFPL-TPHASP 797
>gi|21553305|ref|NP_083686.1| BCL2-like 12 (proline rich) [Mus
musculus]
Length = 255
Score = 27.7 bits (60), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 133 PAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP-LPTPGGRP 2
PA+ R+ + +AGS R L S + SS P LP PG P
Sbjct: 148 PALHRKLARLSAGSFARLVELFSSRESSSSPNCSSPSLPCPGPPP 192
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 97
effective length of database: 9,365,216
effective search space used: 224765184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)