Search to RefSeq (Human) database
Query= 20050322C-000959 (20050322C-000959) 20050322C-000959
(1334 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|16445419|ref|NP_005689.2| secretory carrier membrane protein ... 444 e-125
Alignment gi|16445421|ref|NP_443069.1| secretory carrier membrane protein ... 389 e-108
Alignment gi|33598920|ref|NP_004857.3| secretory carrier membrane protein ... 224 1e-58
Alignment gi|5730031|ref|NP_005688.2| secretory carrier membrane protein 2... 223 2e-58
Alignment gi|20373183|ref|NP_620417.1| secretory carrier membrane protein ... 154 2e-37
Alignment gi|17738287|ref|NP_524558.1| secretory carrier membrane protein ... 149 6e-36
Alignment gi|16445414|ref|NP_438173.1| secretory carrier membrane protein ... 107 2e-23
Alignment gi|51471105|ref|XP_497341.1| PREDICTED: similar to submaxillary ... 34 0.28
Alignment gi|13540490|ref|NP_068585.1| BTB and CNC homology 1, basic leuci... 33 0.62
Alignment gi|6631075|ref|NP_004865.1| BCL2-associated athanogene 4 [Homo s... 32 1.0
>gi|16445419|ref|NP_005689.2| secretory carrier membrane protein 3
isoform 1 [Homo sapiens]
Length = 347
Score = 444 bits (1142), Expect = e-125
Identities = 223/321 (69%), Positives = 226/321 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQDPAVIQHRPS QYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>gi|16445421|ref|NP_443069.1| secretory carrier membrane protein 3
isoform 2 [Homo sapiens]
Length = 321
Score = 389 bits (1000), Expect = e-108
Identities = 203/321 (63%), Positives = 208/321 (64%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQ P + P+P P
Sbjct: 6 DGGNPFAEPSELDNPFQPPPAYEP-PAPA--------PLPPPSAPS-------------- 42
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 43 ---LQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNP 300
>gi|33598920|ref|NP_004857.3| secretory carrier membrane protein 1
isoform 1 [Homo sapiens]
Length = 338
Score = 224 bits (570), Expect = 1e-58
Identities = 134/319 (42%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGIGGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>gi|5730031|ref|NP_005688.2| secretory carrier membrane protein 2
[Homo sapiens]
Length = 329
Score = 223 bits (569), Expect = 2e-58
Identities = 125/318 (39%), Positives = 167/318 (52%), Gaps = 1/318 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSE--TNAATTVPVTQLPGSSQPAV 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQP------TPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F ++ G FGLSILW L+FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1138
+Q +GIPG G SGWI+ + AVL + +L+R+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293
Query: 1139 GASFQKAQQEFAAGVFSN 1192
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>gi|20373183|ref|NP_620417.1| secretory carrier membrane protein 5
[Homo sapiens]
Length = 235
Score = 154 bits (388), Expect = 2e-37
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCL-A 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>gi|17738287|ref|NP_524558.1| secretory carrier membrane protein 4
[Homo sapiens]
Length = 229
Score = 149 bits (375), Expect = 6e-36
Identities = 74/198 (37%), Positives = 103/198 (52%), Gaps = 2/198 (1%)
Frame = +2
Query: 608 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 781
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM C+T +
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACL---A 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + +G+ FGL+ +W+LLFTPC +VCW+RP+YKA Q VL V
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QAIG GWG GW+S A + + + ++H +YR G
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SFQKAQ E+ G + NP
Sbjct: 181 GSFQKAQTEWNTGTWRNP 198
>gi|16445414|ref|NP_438173.1| secretory carrier membrane protein 1
isoform 2 [Homo sapiens]
Length = 157
Score = 107 bits (267), Expect = 2e-23
Identities = 71/166 (42%), Positives = 86/166 (51%), Gaps = 2/166 (1%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 733
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWM 157
>gi|51471105|ref|XP_497341.1| PREDICTED: similar to submaxillary
apomucin [Homo sapiens]
Length = 7202
Score = 33.9 bits (76), Expect = 0.28
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 1192 PCGANCSCQCSRWSCRKCL-PG 1254
PCG+ C+CQ ++WSC + L PG
Sbjct: 915 PCGSQCTCQDAKWSCTEALCPG 936
>gi|13540490|ref|NP_068585.1| BTB and CNC homology 1, basic leucine
zipper transcription factor 2 [Homo sapiens]
Length = 841
Score = 32.7 bits (73), Expect = 0.62
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 259 GLGEGVSTISALSH---VCNRGPGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRP--ASLC 95
G G+ + + A SH + + PGR P+T P + P +P L R +S C
Sbjct: 469 GAGQSLPSSQAYSHGGLMADHLPGRMRPNTSCPVP-----IKVCPRSPPLETRTRTSSSC 523
Query: 94 TDWLYRPEGSQGSP 53
+ + Y +GS GSP
Sbjct: 524 SSYSYAEDGSGGSP 537
>gi|6631075|ref|NP_004865.1| BCL2-associated athanogene 4 [Homo
sapiens]
Length = 457
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/48 (41%), Positives = 22/48 (45%)
Frame = -2
Query: 160 RRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPRVAPASRLK 17
R PW S APSAP P +L P S GSPQ P P + K
Sbjct: 254 RYPWPSSAPSAP-----PGNLYMTESTSPWPSSGSPQSPPSPPVQQPK 296
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 105
effective length of database: 11,615,319
effective search space used: 3937593141
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-000959 (20050322C-000959) 20050322C-000959
(1334 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6755404|ref|NP_036016.1| secretory carrier membrane protein 3... 409 e-114
Alignment gi|58037395|ref|NP_083429.1| secretory carrier membrane protein ... 224 1e-58
Alignment gi|12331398|ref|NP_073724.1| secretory carrier membrane protein ... 212 5e-55
Alignment gi|9937988|ref|NP_064666.1| secretory carrier membrane protein 5... 154 9e-38
Alignment gi|9625033|ref|NP_062521.1| secretory carrier membrane protein 4... 151 1e-36
Alignment gi|6677931|ref|NP_033190.1| SH3-domain binding protein 1 [Mus mu... 34 0.23
Alignment gi|18875406|ref|NP_573502.1| crumbs homolog 1 [Mus musculus] 33 0.40
Alignment gi|6754780|ref|NP_034992.1| myosin XV [Mus musculus] 32 0.68
Alignment gi|41281977|ref|NP_874357.1| myosin XV isoform 2a [Mus musculus] 32 0.68
Alignment gi|51709179|ref|XP_143750.4| similar to GABA-B receptor 2 [Mus m... 32 0.68
>gi|6755404|ref|NP_036016.1| secretory carrier membrane protein 3 [Mus
musculus]
Length = 349
Score = 409 bits (1051), Expect = e-114
Identities = 205/323 (63%), Positives = 217/323 (67%), Gaps = 2/323 (0%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXX- 409
D GNP + GELDNPFQDPAVIQHRPS QYATLDVYNPFE R
Sbjct: 6 DTGNPSPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPP 65
Query: 410 -XXXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHA 586
+QSSRKLSPTEP+NYGSY ELNR AEELDRRERELQH
Sbjct: 66 PSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRTAEELDRRERELQHV 125
Query: 587 ALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXX 766
ALGG TRQNNWPPLPSFCPV+PCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 ALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFF 185
Query: 767 XXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQ 946
FCV+T +GSGFGLS+LW+LLFTPCSFVCWYRPMYKA VQ
Sbjct: 186 ACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQ 245
Query: 947 DVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSL 1126
DV +VLQAIGIPGWGFSGW++ GIAVLGIVMLKRIHSL
Sbjct: 246 DVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLDALLFTGIAVLGIVMLKRIHSL 305
Query: 1127 YRRTGASFQKAQQEFAAGVFSNP 1195
YR+TGASFQKAQQEFAAGVFSNP
Sbjct: 306 YRQTGASFQKAQQEFAAGVFSNP 328
>gi|58037395|ref|NP_083429.1| secretory carrier membrane protein 1
[Mus musculus]
Length = 338
Score = 224 bits (570), Expect = 1e-58
Identities = 134/319 (42%), Positives = 160/319 (50%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGSVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>gi|12331398|ref|NP_073724.1| secretory carrier membrane protein 2
[Mus musculus]
Length = 329
Score = 212 bits (539), Expect = 5e-55
Identities = 119/318 (37%), Positives = 162/318 (50%), Gaps = 1/318 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ + L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-SGLAEFNPFS--ETNAATTVPATQAPGPSQPAV 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + P +P EL+RKA EL+R+ERELQ+ A
Sbjct: 63 LQPS--VEPAQP------TPQAVAAAAQAGLLRQQEELDRKAAELERKERELQNTA-ANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R NNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F + G+ FGLSILW L+FTPC+F+CWYRP+YKA Q +Y
Sbjct: 174 FTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYF 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1138
+Q IG+P G SGW++ + A L + +L+R+H+ YRRT
Sbjct: 234 IQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRT 293
Query: 1139 GASFQKAQQEFAAGVFSN 1192
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>gi|9937988|ref|NP_064666.1| secretory carrier membrane protein 5 [Mus
musculus]
Length = 235
Score = 154 bits (390), Expect = 9e-38
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCL-A 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>gi|9625033|ref|NP_062521.1| secretory carrier membrane protein 4 [Mus
musculus]
Length = 230
Score = 151 bits (381), Expect = 1e-36
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXX 775
A ++NN+PPLP F P++PCF+QD S EIP E Q V +Y LWM C+T
Sbjct: 2 AGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACL-- 59
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
++ + G+ FGL++LW++LFTPCS+VCW+RP YKA Q VL
Sbjct: 60 -AWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVL 118
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
V+QAIG GWG GW++ A++ V + ++H +YR
Sbjct: 119 TVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRG 178
Query: 1136 TGASFQKAQQEFAAGVFSNP 1195
G S QKAQ E++AG + NP
Sbjct: 179 AGGSLQKAQTEWSAGTWRNP 198
>gi|6677931|ref|NP_033190.1| SH3-domain binding protein 1 [Mus
musculus]
Length = 601
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -2
Query: 208 RGPGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPA----SLCTDWLYRPEGSQGSPQQPR 41
R P P P P+P Q R R P++P++S PA + T+ PE G P P
Sbjct: 527 RAPTMPPPLPPVPPQPARRQSRRLPASPVISNMPAQVDQGVATEDREGPEAVGGHPPPPA 586
Query: 40 VAP 32
+ P
Sbjct: 587 LPP 589
>gi|18875406|ref|NP_573502.1| crumbs homolog 1 [Mus musculus]
Length = 1405
Score = 33.1 bits (74), Expect = 0.40
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Frame = +1
Query: 910 QFLRFLLHFLRPGCPICSAGHWHPRLGVQWLDLRFDVGEHQRGCSCAYAAGRPVLHWHRC 1089
QFL+ + + GC +A H P L H C +Y++ R
Sbjct: 1123 QFLKVSTNMVLTGCLPSNACHSSPCL-------------HGGNCEDSYSSYRCACLSGWS 1169
Query: 1090 AGNCDAKADPLLVSP--HGCQLSEGPARICCRCLLQPCGANCSCQCSRWSCRKCLPG 1254
+C+ D SP HG S+G A CRC G NC +C G
Sbjct: 1170 GTHCEINIDECFSSPCIHG-NCSDGVAAYHCRCEPGYTGVNCEVDVDNCKSHQCANG 1225
Score = 28.5 bits (62), Expect = 9.9
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 1096 NCDAKADPLLVSP--HGCQLSEGPARICCRCLLQPCGANCSCQCSRWSCRKCLPGPVTPD 1269
NC+ + D P HG + P C C G +C + + CL G + D
Sbjct: 219 NCELEIDECRSQPCLHGATCQDAPGGYSCDCAPGFLGEHCELSVNECESQPCLHGGLCVD 278
>gi|6754780|ref|NP_034992.1| myosin XV [Mus musculus]
Length = 3511
Score = 32.3 bits (72), Expect = 0.68
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 202 PGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPR 41
P +P+ P P+ W +++AP P V L DW PE SP+ R
Sbjct: 2489 PAKPVLVRPTPQSWAPGSVAKAPKIPSKPVAVPILAQDWT-APESISASPELVR 2541
>gi|41281977|ref|NP_874357.1| myosin XV isoform 2a [Mus musculus]
Length = 2306
Score = 32.3 bits (72), Expect = 0.68
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 202 PGRPLPSTPLPRQWRRPWLSRAPSAPLLSVRPASLCTDWLYRPEGSQGSPQQPR 41
P +P+ P P+ W +++AP P V L DW PE SP+ R
Sbjct: 1284 PAKPVLVRPTPQSWAPGSVAKAPKIPSKPVAVPILAQDWT-APESISASPELVR 1336
>gi|51709179|ref|XP_143750.4| similar to GABA-B receptor 2 [Mus
musculus]
Length = 2088
Score = 32.3 bits (72), Expect = 0.68
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = +1
Query: 997 WLDLRFDVGEHQRGCSCAYAAGRPVLHWHRCAGNCDAKADPLLVSPHGCQ--LSEGPARI 1170
+LDLR E GC G L G + DP++ H C L+ +
Sbjct: 447 FLDLRLYDTE---GCQVPRLEGSRTL-----GGQASGRTDPVV---HFCSSGLARATVSL 495
Query: 1171 CCRCLLQPCGANCSCQCSRWSCRKCLPGPVTPDW 1272
R +LQ C + S S WS LP P++P W
Sbjct: 496 GARRVLQRCCLDLSSAGSSWSSFGRLPFPLSPPW 529
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 103
effective length of database: 9,824,741
effective search space used: 3350236681
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)