Search to RefSeq (Human) database
Query= 20050322C-001236 (20050322C-001236) 20050322C-001236
(1143 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502899|ref|NP_001824.1| clathrin, light polypeptide A isofor... 366 e-101
Alignment gi|6005993|ref|NP_009027.1| clathrin, light polypeptide A isofor... 350 1e-96
Alignment gi|4502901|ref|NP_001825.1| clathrin, light polypeptide isoform ... 243 2e-64
Alignment gi|6005995|ref|NP_009028.1| clathrin, light polypeptide isoform ... 232 4e-61
Alignment gi|51472756|ref|XP_208835.5| PREDICTED: similar to hypothetical ... 45 1e-04
Alignment gi|51472724|ref|XP_496044.1| PREDICTED: similar to hypothetical ... 45 1e-04
Alignment gi|51472567|ref|XP_496041.1| PREDICTED: similar to hypothetical ... 45 1e-04
Alignment gi|51472711|ref|XP_496037.1| PREDICTED: similar to hypothetical ... 42 6e-04
Alignment gi|51472750|ref|XP_375272.2| PREDICTED: similar to hypothetical ... 40 0.002
Alignment gi|51472691|ref|XP_498421.1| PREDICTED: FLJ40198 protein [Homo s... 40 0.002
>gi|4502899|ref|NP_001824.1| clathrin, light polypeptide A isoform a
[Homo sapiens]
Length = 218
Score = 366 bits (939), Expect = e-101
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>gi|6005993|ref|NP_009027.1| clathrin, light polypeptide A isoform b
[Homo sapiens]
Length = 248
Score = 350 bits (898), Expect = 1e-96
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>gi|4502901|ref|NP_001825.1| clathrin, light polypeptide isoform a
[Homo sapiens]
Length = 211
Score = 243 bits (620), Expect = 2e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|6005995|ref|NP_009028.1| clathrin, light polypeptide isoform b
[Homo sapiens]
Length = 229
Score = 232 bits (591), Expect = 4e-61
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 702
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 703 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>gi|51472756|ref|XP_208835.5| PREDICTED: similar to hypothetical
protein FLJ36144 [Homo sapiens]
Length = 550
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Frame = +1
Query: 484 QVDRLQSEPESIRK-----WREEQT-----ERLEALDANSRKQEAEWK--EKAIKELEEW 627
Q +++ + E IRK WR+E+ E++ + R+QE + + EK I+E EE
Sbjct: 410 QKEKMHEQEEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMRRQEEKIREQEKKIREQEEK 469
Query: 628 YARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
Q+E++++ + R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 470 IREQEEKIREQEKKIREQEEK-IREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 528
Query: 799 ----MRSVLISLKQ 828
MR + L+Q
Sbjct: 529 QEEKMREQEVRLRQ 542
Score = 32.0 bits (71), Expect = 0.86
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKAN 669
+RL + E + WR+E+ R+++ + +E+ I+E EE RQ+E + + +
Sbjct: 243 NRLNQQQEE-KMWRQEE-------KIQEREEKIQEQEEKIREQEEKMRRQEEMMWEKEEK 294
Query: 670 NRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK 786
R EE WE+ ++ + K +Q K
Sbjct: 295 MRRQEEMM------------WEKEEKIRELEEKMHEQEK 321
Score = 30.0 bits (66), Expect = 3.3
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 484 QVDRLQSEPESIR----KWREEQTERLEALDANSRKQEAEW--------KEKAIKELEEW 627
Q ++++ + E IR K RE++ + E + ++E W +E+ ++E EE
Sbjct: 466 QEEKIREQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEK 525
Query: 628 YARQDEQLQKTKANNRAAEE 687
RQ+E++++ + R EE
Sbjct: 526 MRRQEEKMREQEVRLRQQEE 545
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 478 ISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK-----------EKAIKELEE 624
I +++ E E IR+ +EE+ + E + ++QE E K E+ I+E E+
Sbjct: 309 IRELEEKMHEQEKIRE-QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEK 367
Query: 625 WYARQDEQL---QKTKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKD 789
RQ+E++ +K + + E+ + EE E W + ++ + K KQ +
Sbjct: 368 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEEKIRKQEEK 427
Query: 790 VSR 798
V R
Sbjct: 428 VWR 430
>gi|51472724|ref|XP_496044.1| PREDICTED: similar to hypothetical
protein FLJ36144 [Homo sapiens]
Length = 550
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Frame = +1
Query: 484 QVDRLQSEPESIRK-----WREEQT-----ERLEALDANSRKQEAEWK--EKAIKELEEW 627
Q +++ + E IRK WR+E+ E++ + R+QE + + EK I+E EE
Sbjct: 410 QKEKMHEQEEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMRRQEEKIREQEKKIREQEEK 469
Query: 628 YARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
Q+E++++ + R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 470 IREQEEKIREQEKKIREQEEK-IREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 528
Query: 799 ----MRSVLISLKQ 828
MR + L+Q
Sbjct: 529 QEEKMREQEVRLRQ 542
Score = 32.0 bits (71), Expect = 0.86
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKAN 669
+RL + E + WR+E+ R+++ + +E+ I+E EE RQ+E + + +
Sbjct: 243 NRLNQQQEE-KMWRQEE-------KIQEREEKIQEQEEKIREQEEKMRRQEEMMWEKEEK 294
Query: 670 NRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK 786
R EE WE+ ++ + K +Q K
Sbjct: 295 MRRQEEMM------------WEKEEKIRELEEKMHEQEK 321
Score = 30.0 bits (66), Expect = 3.3
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 484 QVDRLQSEPESIR----KWREEQTERLEALDANSRKQEAEW--------KEKAIKELEEW 627
Q ++++ + E IR K RE++ + E + ++E W +E+ ++E EE
Sbjct: 466 QEEKIREQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEK 525
Query: 628 YARQDEQLQKTKANNRAAEE 687
RQ+E++++ + R EE
Sbjct: 526 MRRQEEKMREQEVRLRQQEE 545
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 478 ISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK-----------EKAIKELEE 624
I +++ E E IR+ +EE+ + E + ++QE E K E+ I+E E+
Sbjct: 309 IRELEEKMHEQEKIRE-QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEK 367
Query: 625 WYARQDEQL---QKTKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKD 789
RQ+E++ +K + + E+ + EE E W + ++ + K KQ +
Sbjct: 368 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEEKIRKQEEK 427
Query: 790 VSR 798
V R
Sbjct: 428 VWR 430
>gi|51472567|ref|XP_496041.1| PREDICTED: similar to hypothetical
protein FLJ36144 [Homo sapiens]
Length = 590
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Frame = +1
Query: 484 QVDRLQSEPESIRK-----WREEQT-----ERLEALDANSRKQEAEWK--EKAIKELEEW 627
Q +++ + E IRK WR+E+ E++ + R+QE + + EK I+E EE
Sbjct: 450 QKEKMHEQEEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMRRQEEKIREQEKKIREQEEK 509
Query: 628 YARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
Q+E++++ + R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 510 IREQEEKIREQEKKIREQEEK-IREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 568
Query: 799 ----MRSVLISLKQ 828
MR + L+Q
Sbjct: 569 QEEKMREQEVRLRQ 582
Score = 32.0 bits (71), Expect = 0.86
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKAN 669
+RL + E + WR+E+ R+++ + +E+ I+E EE RQ+E + + +
Sbjct: 283 NRLNQQQEE-KMWRQEE-------KIQEREEKIQEQEEKIREQEEKMRRQEEMMWEKEEK 334
Query: 670 NRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK 786
R EE WE+ ++ + K +Q K
Sbjct: 335 MRRQEEMM------------WEKEEKIRELEEKMHEQEK 361
Score = 30.0 bits (66), Expect = 3.3
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 484 QVDRLQSEPESIR----KWREEQTERLEALDANSRKQEAEW--------KEKAIKELEEW 627
Q ++++ + E IR K RE++ + E + ++E W +E+ ++E EE
Sbjct: 506 QEEKIREQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEK 565
Query: 628 YARQDEQLQKTKANNRAAEE 687
RQ+E++++ + R EE
Sbjct: 566 MRRQEEKMREQEVRLRQQEE 585
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 478 ISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK-----------EKAIKELEE 624
I +++ E E IR+ +EE+ + E + ++QE E K E+ I+E E+
Sbjct: 349 IRELEEKMHEQEKIRE-QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEK 407
Query: 625 WYARQDEQL---QKTKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKD 789
RQ+E++ +K + + E+ + EE E W + ++ + K KQ +
Sbjct: 408 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEEKIRKQEEK 467
Query: 790 VSR 798
V R
Sbjct: 468 VWR 470
>gi|51472711|ref|XP_496037.1| PREDICTED: similar to hypothetical
protein FLJ36144 [Homo sapiens]
Length = 557
Score = 42.4 bits (98), Expect = 6e-04
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Frame = +1
Query: 484 QVDRLQSEPESIRKWREE---QTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQ 648
Q +++ + E IRK E+ Q E++ + R+QE + WK E+ I+E EE Q+E+
Sbjct: 417 QKEKMHEQEEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWKQEEKIREQEEKIREQEEK 476
Query: 649 LQKTKANNRAAEEAF------VNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
+++ + R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 477 IREQEEKIREQEEKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 535
Score = 32.7 bits (73), Expect = 0.51
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKA--IKELEEWYARQDEQLQKTK 663
+RL + E + WR+E E+++ + ++QE + +E+ I+E EE RQ+E + + +
Sbjct: 243 NRLNQQQEE-KMWRQE--EKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKE 299
Query: 664 ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK 786
R EE WE+ ++ + K +Q K
Sbjct: 300 EKMRRQEEMM------------WEKEEKIRELEEKMHEQEK 328
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 478 ISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK-----------EKAIKELEE 624
I +++ E E IR+ +EE+ + E + ++QE E K E+ I+E E+
Sbjct: 316 IRELEEKMHEQEKIRE-QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEK 374
Query: 625 WYARQDEQL---QKTKANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAKD 789
RQ+E++ +K + + E+ + EE E W + ++ + K KQ +
Sbjct: 375 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEEKIRKQEEK 434
Query: 790 VSR 798
V R
Sbjct: 435 VWR 437
Score = 28.5 bits (62), Expect = 9.5
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 490 DRLQSEPESIRKWRE--EQTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQK 657
+ + + E IR+ E Q E++ + RKQE + W+ E+ + + EE Q+E++ K
Sbjct: 399 EEMWRQEEKIREQEEIWRQKEKMHEQEEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWK 458
Query: 658 TKANNRAAEE 687
+ R EE
Sbjct: 459 QEEKIREQEE 468
>gi|51472750|ref|XP_375272.2| PREDICTED: similar to hypothetical
protein FLJ36144 [Homo sapiens]
Length = 326
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Frame = +1
Query: 505 EPESIRKWREE---QTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKAN 669
E E IRK E+ Q E++ + R+QE + W+ E+ I+E EE Q+E++++ K
Sbjct: 185 EQEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQKEK 244
Query: 670 NRAAEEAF------VNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 245 IREQEEKIWEQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 296
Score = 32.7 bits (73), Expect = 0.51
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 526 WREEQTERLEALDANSRKQEAEWKEKA--IKELEEWYARQDEQLQKTKANNRAAEEAFVN 699
WR+E E+++ + ++QE + +E+ I+E EE RQ+E + + + R EE
Sbjct: 2 WRQE--EKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWE 59
Query: 700 DIEESSPGTE--WERVARLCDFNPKSSKQAK 786
E+ E WE+ ++ + K +Q K
Sbjct: 60 KEEKMRRLEEMMWEKEEKIRELEEKMHEQEK 90
>gi|51472691|ref|XP_498421.1| PREDICTED: FLJ40198 protein [Homo
sapiens]
Length = 627
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Frame = +1
Query: 505 EPESIRKWREE---QTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKAN 669
E E IRK E+ Q E++ + R+QE + W+ E+ I+E EE Q+E++++ K
Sbjct: 486 EQEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQKEK 545
Query: 670 NRAAEEAF------VNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSR 798
R EE + + EE E WE+ ++C+ K +Q + + R
Sbjct: 546 IREQEEKIWEQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 597
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKA--IKELEEWYARQDEQLQKTK 663
+RL + E + WR+E E+++ + ++QE + +E+ I+E EE RQ+E + + +
Sbjct: 292 NRLNQQQEE-KMWRQE--EKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKE 348
Query: 664 ANNRAAEEAFVNDIEESSPGTE--WERVARLCDFNPKSSKQAK 786
R EE E+ E WE+ ++ + K +Q K
Sbjct: 349 EKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQEK 391
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 103
effective length of database: 11,672,955
effective search space used: 3233408535
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-001236 (20050322C-001236) 20050322C-001236
(1143 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7949023|ref|NP_058040.1| clathrin, light polypeptide (Lca) [M... 347 8e-96
Alignment gi|30794164|ref|NP_083146.1| clathrin, light polypeptide (Lcb) [... 240 1e-63
Alignment gi|41322921|ref|NP_958788.1| plectin 1 isoform 3 [Mus musculus] 39 0.008
Alignment gi|41322925|ref|NP_958787.1| plectin 1 isoform 2 [Mus musculus] 39 0.008
Alignment gi|41322904|ref|NP_035247.1| plectin 1 isoform 1 [Mus musculus] 39 0.008
Alignment gi|41322933|ref|NP_958792.1| plectin 1 isoform 7 [Mus musculus] 39 0.008
Alignment gi|41322931|ref|NP_958791.1| plectin 1 isoform 6 [Mus musculus] 39 0.008
Alignment gi|41322939|ref|NP_958795.1| plectin 1 isoform 10 [Mus musculus] 39 0.008
Alignment gi|41322937|ref|NP_958794.1| plectin 1 isoform 9 [Mus musculus] 39 0.008
Alignment gi|41322929|ref|NP_958790.1| plectin 1 isoform 5 [Mus musculus] 39 0.008
>gi|7949023|ref|NP_058040.1| clathrin, light polypeptide (Lca) [Mus
musculus]
Length = 235
Score = 347 bits (890), Expect = 8e-96
Identities = 188/236 (79%), Positives = 193/236 (81%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFG----APAGPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFG AP GP+LGNGVAG EEDPAAAFLA +ESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGDPAGAPGGPALGNGVAGAGEEDPAAAFLAHEESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GRATRRAGGGP-DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 119
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 120 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFYKQPFADVIGYV 179
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVA LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 180 AAEEAFVNDIDESSPGTEWERVAPLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 235
>gi|30794164|ref|NP_083146.1| clathrin, light polypeptide (Lcb) [Mus
musculus]
Length = 211
Score = 240 bits (612), Expect = 1e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|41322921|ref|NP_958788.1| plectin 1 isoform 3 [Mus musculus]
Length = 4521
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1811 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1870
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1871 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1926
Query: 802 RS 807
RS
Sbjct: 1927 RS 1928
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2049 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2103
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2104 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2131
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1982 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2041
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2042 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2088
Query: 790 VSRMR 804
R++
Sbjct: 2089 AERLK 2093
>gi|41322925|ref|NP_958787.1| plectin 1 isoform 2 [Mus musculus]
Length = 4534
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1824 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1883
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1884 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1939
Query: 802 RS 807
RS
Sbjct: 1940 RS 1941
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2062 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2116
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2117 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2144
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1995 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2054
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2055 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2101
Query: 790 VSRMR 804
R++
Sbjct: 2102 AERLK 2106
>gi|41322904|ref|NP_035247.1| plectin 1 isoform 1 [Mus musculus]
Length = 4572
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1862 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1921
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1922 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1977
Query: 802 RS 807
RS
Sbjct: 1978 RS 1979
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2100 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2154
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2155 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2182
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2033 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2092
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2093 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2139
Query: 790 VSRMR 804
R++
Sbjct: 2140 AERLK 2144
>gi|41322933|ref|NP_958792.1| plectin 1 isoform 7 [Mus musculus]
Length = 4511
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1801 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1860
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1861 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1916
Query: 802 RS 807
RS
Sbjct: 1917 RS 1918
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2039 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2093
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2094 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2121
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1972 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2031
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2032 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2078
Query: 790 VSRMR 804
R++
Sbjct: 2079 AERLK 2083
>gi|41322931|ref|NP_958791.1| plectin 1 isoform 6 [Mus musculus]
Length = 4686
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1976 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 2035
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 2036 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 2091
Query: 802 RS 807
RS
Sbjct: 2092 RS 2093
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2214 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2268
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2269 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2296
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2147 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2206
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2207 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2253
Query: 790 VSRMR 804
R++
Sbjct: 2254 AERLK 2258
>gi|41322939|ref|NP_958795.1| plectin 1 isoform 10 [Mus musculus]
Length = 4550
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1840 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1899
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1900 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1955
Query: 802 RS 807
RS
Sbjct: 1956 RS 1957
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 2078 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2132
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2133 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2160
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 2011 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 2070
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 2071 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2117
Query: 790 VSRMR 804
R++
Sbjct: 2118 AERLK 2122
>gi|41322937|ref|NP_958794.1| plectin 1 isoform 9 [Mus musculus]
Length = 4449
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1739 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1798
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1799 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1854
Query: 802 RS 807
RS
Sbjct: 1855 RS 1856
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1977 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2031
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2032 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2059
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1910 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1969
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1970 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2016
Query: 790 VSRMR 804
R++
Sbjct: 2017 AERLK 2021
>gi|41322929|ref|NP_958790.1| plectin 1 isoform 5 [Mus musculus]
Length = 4449
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +1
Query: 460 TDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI---KELEEWY 630
T+ AAIS+ RL++E E K +E + ERL L + Q +E+A ++EE
Sbjct: 1739 TEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAALHKADIEERL 1798
Query: 631 ARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRM 801
A QL+K + ++ V D E E +A F ++ +A+ ++ R+
Sbjct: 1799 A----QLRKASESELERQKGLVEDTLRQRRQVEEEIMALKVSFEKAAAGKAELELELGRI 1854
Query: 802 RS 807
RS
Sbjct: 1855 RS 1856
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 660
+ +DRL+SE E+ R+ EE E E + +EA K ++E E +EQ Q
Sbjct: 1977 NMLDRLRSEAEAARRAAEEAEEAREQAE-----REAAQSRKQVEEAERLKQSAEEQAQAQ 2031
Query: 661 KANNRAAEEAFVNDIEESSPGTEWERVA 744
AAE+ +E++ + E+ A
Sbjct: 2032 AQAQAAAEKLRKEAEQEAARRAQAEQAA 2059
Score = 32.3 bits (72), Expect = 0.56
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWRE----EQTERLE-ALDANSRKQEAEWKEKAI------KELE 621
A+ +V+RL+++ E R+ RE E +L+ A +A ++ +AE K A +EL+
Sbjct: 1910 ALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQ 1969
Query: 622 EWYARQDEQLQKTK----ANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 789
+ ++ L + + A RAAEEA EE+ E E +S KQ ++
Sbjct: 1970 QTLQQEQNMLDRLRSEAEAARRAAEEA-----EEAREQAEREAA--------QSRKQVEE 2016
Query: 790 VSRMR 804
R++
Sbjct: 2017 AERLK 2021
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 102
effective length of database: 9,851,042
effective search space used: 2738589676
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)