Search to RefSeq (Human) database
Query= 20050322C-002086 (20050322C-002086) 20050322C-002086
(1042 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|38093663|ref|NP_938026.1| hypothetical protein LOC349136 [Hom... 190 2e-48
Alignment gi|51492803|ref|XP_499543.1| PREDICTED: hypothetical protein XP_... 119 3e-27
Alignment gi|51466613|ref|XP_499088.1| PREDICTED: hypothetical protein XP_... 119 3e-27
Alignment gi|51467623|ref|XP_376909.2| PREDICTED: similar to hypothetical ... 116 2e-26
Alignment gi|16117781|ref|NP_361014.1| F-box protein FBW7 isoform 1 [Homo ... 112 3e-25
Alignment gi|16117779|ref|NP_060785.2| F-box protein FBW7 isoform 2 [Homo ... 112 3e-25
Alignment gi|21071067|ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens] 109 4e-24
Alignment gi|16554629|ref|NP_438172.1| WD repeat domain 5 protein [Homo sa... 100 2e-21
Alignment gi|16554627|ref|NP_060058.1| WD repeat domain 5 protein [Homo sa... 100 2e-21
Alignment gi|4557741|ref|NP_000421.1| platelet-activating factor acetylhyd... 100 2e-21
>gi|38093663|ref|NP_938026.1| hypothetical protein LOC349136 [Homo
sapiens]
Length = 277
Score = 190 bits (482), Expect = 2e-48
Identities = 87/92 (94%), Positives = 88/92 (95%)
Frame = +1
Query: 766 VSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQT 945
+SREFRGHRNCVLTLAYSAPWDLP PC EEA AGGLLVTGSTDGTAKVWQVASGCCHQT
Sbjct: 1 MSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGLLVTGSTDGTAKVWQVASGCCHQT 60
Query: 946 LRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
LRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW
Sbjct: 61 LRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 92
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED--EAAFTCSADCTIRKWDV 633
G L+TGS DGTA++W A G C L+GH V L+ AFT S D TIR WD+
Sbjct: 35 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 94
Query: 634 LTGQCLQVFRGHTSIV 681
L+G+ L+VFR H V
Sbjct: 95 LSGEQLRVFREHRGSV 110
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV 561
H G + L L G TGS D T R W G+ + + H V
Sbjct: 64 HTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSV 110
>gi|51492803|ref|XP_499543.1| PREDICTED: hypothetical protein
XP_499543 [Homo sapiens]
Length = 416
Score = 119 bits (299), Expect = 3e-27
Identities = 63/81 (77%), Positives = 69/81 (85%)
Frame = -2
Query: 576 QLAEGHVAFMSLQEGAALAVRGAPEPGGAVLAARQQALPVGAQAEPVDAPAVVRADPQGR 397
++ EG V +LQE AALAVRGAPEPG AVLAARQQALPVGAQA+PVDAPAVV ADPQGR
Sbjct: 29 EVREG-VGGSTLQERAALAVRGAPEPGRAVLAARQQALPVGAQAQPVDAPAVVGADPQGR 87
Query: 396 PSAPHSAGRAGTGRRLRPARE 334
P+APH AGRAG + LRPARE
Sbjct: 88 PAAPHPAGRAGNKKELRPARE 108
>gi|51466613|ref|XP_499088.1| PREDICTED: hypothetical protein
XP_499088 [Homo sapiens]
Length = 416
Score = 119 bits (299), Expect = 3e-27
Identities = 63/81 (77%), Positives = 69/81 (85%)
Frame = -2
Query: 576 QLAEGHVAFMSLQEGAALAVRGAPEPGGAVLAARQQALPVGAQAEPVDAPAVVRADPQGR 397
++ EG V +LQE AALAVRGAPEPG AVLAARQQALPVGAQA+PVDAPAVV ADPQGR
Sbjct: 29 EVREG-VGGSTLQERAALAVRGAPEPGRAVLAARQQALPVGAQAQPVDAPAVVGADPQGR 87
Query: 396 PSAPHSAGRAGTGRRLRPARE 334
P+APH AGRAG + LRPARE
Sbjct: 88 PAAPHPAGRAGNKKELRPARE 108
>gi|51467623|ref|XP_376909.2| PREDICTED: similar to hypothetical
protein FLJ25955 [Homo sapiens]
Length = 792
Score = 116 bits (291), Expect = 2e-26
Identities = 74/212 (34%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Frame = +1
Query: 427 GGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSA 606
GG+N + SPDGQ LLTGSEDG W T GQ L GH V FC+ + SA
Sbjct: 489 GGVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASA 548
Query: 607 --DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSR 774
DCT+R WDV +CL+V +GH V + + + QL S +D+ W V
Sbjct: 549 SCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQWPHTHL 608
Query: 775 EFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW---QVASGCCHQT 945
E G + A W + + L TGS D T +W V HQ
Sbjct: 609 ELSGGKGMDSGSRLDAEW---VESWLGQTHRSCLQATGSWDSTVHIWDLRMVTPAVSHQA 665
Query: 946 LRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
L GH+ + CL G A +GS D TI W
Sbjct: 666 LEGHSANISCLCYSASGLLA-SGSWDKTIHIW 696
Score = 57.0 bits (136), Expect = 2e-08
Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 17/228 (7%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
LRV H+ + +S SPD ++L +G D LW L G + + +L+
Sbjct: 565 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQWPHTHLELSGGKGMDSGSRLDA 624
Query: 583 E-------------AAFTCSADCTIRKWD---VLTGQCLQVFRGHTSIVNRILVTNNQLF 714
E T S D T+ WD V Q GH++ ++ + + + L
Sbjct: 625 EWVESWLGQTHRSCLQATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLL 684
Query: 715 SS-SYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGS 891
+S S+D+T W + + +GH V ++A+S P +L L +
Sbjct: 685 ASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFS-PDEL-------------WLASAG 730
Query: 892 TDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIR 1035
KVW +G C +TL+G G +G+ D T R
Sbjct: 731 YSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRR 778
>gi|16117781|ref|NP_361014.1| F-box protein FBW7 isoform 1 [Homo
sapiens]
Length = 707
Score = 112 bits (281), Expect = 3e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 391 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 450
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 451 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 510
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 511 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 552
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 553 HVVSGSLDTSIRVW 566
Score = 102 bits (253), Expect = 6e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 472 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 531
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 532 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 587
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 588 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 634
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 635 -NFVITSSDDGTVKLW 649
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 510 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 569
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 570 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 629
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 630 LQFNK----------------NFVITSSDDGTVKLWDLKTG 654
Score = 78.6 bits (192), Expect = 7e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 546 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 605
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 606 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 658
Score = 65.9 bits (159), Expect = 5e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 374 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 425
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 426 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 475
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 476 SGSRDATLRVW 486
>gi|16117779|ref|NP_060785.2| F-box protein FBW7 isoform 2 [Homo
sapiens]
Length = 627
Score = 112 bits (281), Expect = 3e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 473 HVVSGSLDTSIRVW 486
Score = 102 bits (253), Expect = 6e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 452 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 507
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 508 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 554
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 555 -NFVITSSDDGTVKLW 569
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 430 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 489
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 490 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 549
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 550 LQFNK----------------NFVITSSDDGTVKLWDLKTG 574
Score = 78.6 bits (192), Expect = 7e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 466 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 525
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 526 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 65.9 bits (159), Expect = 5e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 396 SGSRDATLRVW 406
>gi|21071067|ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 109 bits (272), Expect = 4e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
>gi|16554629|ref|NP_438172.1| WD repeat domain 5 protein [Homo
sapiens]
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 9e-18
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 3e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>gi|16554627|ref|NP_060058.1| WD repeat domain 5 protein [Homo
sapiens]
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 9e-18
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 3e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>gi|4557741|ref|NP_000421.1| platelet-activating factor
acetylhydrolase, isoform Ib, alpha subunit (45kD) [Homo
sapiens]
Length = 410
Score = 100 bits (248), Expect = 2e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 4e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 5e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 102
effective length of database: 11,701,773
effective search space used: 2855232612
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-002086 (20050322C-002086) 20050322C-002086
(1042 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|21218434|ref|NP_536353.2| F-box and WD-40 domain protein 7, a... 112 3e-25
Alignment gi|28893469|ref|NP_796316.1| TAF5 RNA polymerase II, TATA box bi... 109 3e-24
Alignment gi|58037455|ref|NP_083963.1| RIKEN cDNA 1700123D08 [Mus musculus] 107 2e-23
Alignment gi|18252790|ref|NP_543124.1| WD repeat domain 5 [Mus musculus] 100 1e-21
Alignment gi|7305363|ref|NP_038653.1| platelet-activating factor acetylhyd... 100 2e-21
Alignment gi|23956270|ref|NP_598776.1| F-box and WD-40 domain protein 11 [... 97 2e-20
Alignment gi|21312318|ref|NP_081389.1| WD repeat domain 5B [Mus musculus] 95 8e-20
Alignment gi|6753210|ref|NP_033901.1| beta-transducin repeat containing pr... 93 3e-19
Alignment gi|31980791|ref|NP_058064.2| pleiotropic regulator 1 [Mus musculus] 89 3e-18
Alignment gi|29789080|ref|NP_056642.1| coatomer protein complex, subunit b... 87 2e-17
>gi|21218434|ref|NP_536353.2| F-box and WD-40 domain protein 7,
archipelago homolog [Mus musculus]
Length = 629
Score = 112 bits (281), Expect = 3e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 372
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 373 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 432
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 433 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 474
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 475 HVVSGSLDTSIRVW 488
Score = 102 bits (253), Expect = 5e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 394 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 453
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 454 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 509
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 510 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK- 556
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 557 -NFVITSSDDGTVKLW 571
Score = 84.7 bits (208), Expect = 8e-17
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 432 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 491
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 492 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTC 551
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 552 LQFNK----------------NFVITSSDDGTVKLWDLKTG 576
Score = 78.6 bits (192), Expect = 6e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 468 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 527
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 528 WDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 580
Score = 65.9 bits (159), Expect = 4e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 296 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 347
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 348 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 397
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 398 SGSRDATLRVW 408
>gi|28893469|ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding
protein (TBP)-associated factor, 100kDa [Mus musculus]
Length = 801
Score = 109 bits (272), Expect = 3e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 535 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 594
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 595 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 654
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 655 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 700
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 701 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 739
>gi|58037455|ref|NP_083963.1| RIKEN cDNA 1700123D08 [Mus musculus]
Length = 303
Score = 107 bits (266), Expect = 2e-23
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 7/220 (3%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H G +N + SPDG+ LLT S+DG +W T G+ L GH V C
Sbjct: 19 VRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSP 78
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWS 750
+ + S+D +IR WDV +CL V +GH V + + + QL S +D+ A W
Sbjct: 79 DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE 138
Query: 751 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
V G+ GH + + + +S D L TGS D T +W + +
Sbjct: 139 VQSGRRVHLLVGHCDSIQSSDFSPTSD--------------SLATGSWDSTVHIWDLRAS 184
Query: 931 ---CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+ L GHTG + CL G A +GS D TI W
Sbjct: 185 TPVVSYHNLEGHTGNISCLCYSASGLLA-SGSWDKTICVW 223
Score = 45.1 bits (105), Expect = 7e-05
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H G I+ L S G L +GS D T +W L+GH +V +
Sbjct: 196 HTGNISCLCYSASGL-LASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLA 254
Query: 601 SADC--TIRKWDVLTGQCLQVFRGHTSIVNRILVT 699
SA T++ WD LTG+CL+ +G + + + T
Sbjct: 255 SAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFT 289
>gi|18252790|ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
Length = 334
Score = 100 bits (249), Expect = 1e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 8e-18
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 3e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 2e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>gi|7305363|ref|NP_038653.1| platelet-activating factor
acetylhydrolase, isoform 1b, beta1 subunit [Mus musculus]
Length = 410
Score = 100 bits (248), Expect = 2e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 3e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 2e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 4e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>gi|23956270|ref|NP_598776.1| F-box and WD-40 domain protein 11 [Mus
musculus]
Length = 563
Score = 97.1 bits (240), Expect = 2e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 294 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 351
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 352 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 411
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 412 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 455
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 456 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 489
Score = 74.3 bits (181), Expect = 1e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 378 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 435
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 436 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 491
Score = 67.0 bits (162), Expect = 2e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 354 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 413
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 414 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 473
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 474 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 517
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 518 RLQFDE--FQIISSSHDDTILIW 538
>gi|21312318|ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
Length = 328
Score = 94.7 bits (234), Expect = 8e-20
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 7/221 (3%)
Frame = +1
Query: 400 ALRVC-ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
ALR+ A H I+ + SP+G+ L + + D +W DG C L GH ++
Sbjct: 30 ALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAW 89
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARA 744
+++ SA D T++ WD+ +G+CL+ +GH+ V +N + S S+D + +
Sbjct: 90 SSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKI 149
Query: 745 WSVDKGQVSREFRGHRNCVLTL-AYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
W V G+ C+ TL A+S P C G L+V+GS DG ++W
Sbjct: 150 WEVKTGK----------CLKTLSAHSDPISAVNFNC-----NGSLIVSGSYDGLCRIWDA 194
Query: 922 ASGCCHQTLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
ASG C +TL + V +P G T + D T++ W
Sbjct: 195 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLW 235
Score = 89.7 bits (221), Expect = 3e-18
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 7/214 (3%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H I+ ++ S D RL++ S+D T ++W G+C L+GH +V C +
Sbjct: 80 HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIV 139
Query: 601 SA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 768
S D +++ W+V TG+CL+ H+ ++ + N + S SYD R W GQ
Sbjct: 140 SGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQ- 198
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 948
C+ TLA P V+ + G ++T + D T K+W + G C +T
Sbjct: 199 ---------CLRTLADEGN---PPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTY 246
Query: 949 RGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
GH CL T +GS D + W
Sbjct: 247 TGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIW 280
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALL--QGHE--SYVTFC 570
L+ + H I+ ++ + +G +++GS DG R+W A GQC L +G+ S+V F
Sbjct: 158 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFS 217
Query: 571 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTS----IVNRILVTNNQ-LFSSSYDRT 735
+ T + D T++ WD G+CL+ + GH + + VT + + S S D
Sbjct: 218 P-NGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNM 276
Query: 736 ARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W++ ++ + +GH + V++ A ++ + +E D T KVW
Sbjct: 277 VYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALE------------NDKTIKVW 324
>gi|6753210|ref|NP_033901.1| beta-transducin repeat containing protein
[Mus musculus]
Length = 569
Score = 92.8 bits (229), Expect = 3e-19
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 3/215 (1%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 301 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNG 358
Query: 586 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 359 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 418
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 419 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 462
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+ L GH V C+ D +G+ D I+ W
Sbjct: 463 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 495
Score = 73.2 bits (178), Expect = 3e-13
Identities = 36/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++W+T+ + L GH+ + Q D
Sbjct: 384 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 441
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 442 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 497
>gi|31980791|ref|NP_058064.2| pleiotropic regulator 1 [Mus musculus]
Length = 513
Score = 89.4 bits (220), Expect = 3e-18
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 4/216 (1%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQLE 579
RV + H G + +++ P Q +TGS D T ++W A G+ L GH S V
Sbjct: 197 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTR 256
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNNQLFSSSYDRTARAWSV 753
F+C D ++ WD+ + ++ + GH S V + + T + L + S D TAR W V
Sbjct: 257 SPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDV 316
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GH N V T+ A A ++TGS D T ++W + +G
Sbjct: 317 RTKASVHTLSGHTNAVATVRCQA--------------AEPQIITGSHDTTIRLWDLVAGK 362
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
TL H +V +VL +T +GS D I+ W
Sbjct: 363 TRVTLTNHKKSVRAVVLHPLLYTFASGSPD-NIKQW 397
Score = 67.4 bits (163), Expect = 1e-11
Identities = 59/220 (26%), Positives = 84/220 (38%), Gaps = 13/220 (5%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTF--CQLEDEAAF 594
H + L L P L+T S D TAR+W L GH + V CQ +
Sbjct: 286 HLSAVYGLDLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQII 345
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQL--FSSSYDRTARAWSVDKGQV 768
T S D TIR WD++ G+ H V R +V + L F+S + W G
Sbjct: 346 TGSHDTTIRLWDLVAGKTRVTLTNHKKSV-RAVVLHPLLYTFASGSPDNIKQWKFPDGGF 404
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ-- 942
+ GH + TLA +A G+LV+G+ +GT +W +G Q
Sbjct: 405 IQNLSGHNAIINTLAVNAD---------------GVLVSGADNGTMHLWDWRTGYNFQRV 449
Query: 943 -------TLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+L +G C D T D TI+ +
Sbjct: 450 HAAVQPGSLDSESGIFAC-AFDRSESRLLTAEADKTIKVY 488
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
+++ + H + + +++TGS D T RLW G+ L H+ V L
Sbjct: 320 ASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVL 379
Query: 577 EDEA-AFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDR-TARAW 747
F + I++W G +Q GH +I+N + V + + S D T W
Sbjct: 380 HPLLYTFASGSPDNIKQWKFPDGGFIQNLSGHNAIINTLAVNADGVLVSGADNGTMHLW 438
Score = 31.2 bits (69), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
++ + GH G V C+ ++ TGS D TI+ W
Sbjct: 196 YRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIW 230
>gi|29789080|ref|NP_056642.1| coatomer protein complex, subunit beta 2
(beta prime) [Mus musculus]
Length = 905
Score = 87.0 bits (214), Expect = 2e-17
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 6/197 (3%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF--TCSADCTIRKWDV-LT 639
++TG++D R+++ + + + H Y+ + F T S D I+ WD
Sbjct: 72 VVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKK 131
Query: 640 GQCLQVFRGHTSIVNRILVT---NNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTL 810
C QVF GHT V +I++ NNQ S+S DRT + W + + GH V +
Sbjct: 132 WSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCI 191
Query: 811 AYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDT 990
Y + D P L++G+ D K+W + C QTL GH V C
Sbjct: 192 DYYSGGDKP------------YLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHP 239
Query: 991 PGHTAFTGSTDATIRAW 1041
TGS D T+R W
Sbjct: 240 ELPIIITGSEDGTVRIW 256
Score = 37.0 bits (84), Expect = 0.020
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQR--LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE--A 588
H G+N + G + L++G++D ++W + C L+GH V+ E
Sbjct: 184 HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPI 243
Query: 589 AFTCSADCTIRKW 627
T S D T+R W
Sbjct: 244 IITGSEDGTVRIW 256
Score = 33.1 bits (74), Expect = 0.29
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSP-DGQRLLTGSEDGTARLWSTADGQCCALLQGHE---SYVT 564
S +V H + + ++P D + + S D T ++W L+GHE + +
Sbjct: 133 SCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCID 192
Query: 565 FCQLEDEAAFTCSADCTIRK-WDVLTGQCLQVFRGHTSIVNRILVTNNQ--LFSSSYDRT 735
+ D+ AD + K WD C+Q GH V+ + + S D T
Sbjct: 193 YYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGT 252
Query: 736 ARAW 747
R W
Sbjct: 253 VRIW 256
Score = 31.6 bits (70), Expect = 0.84
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTA 516
H ++ S P+ ++TGSEDGT R+W ++
Sbjct: 228 HAQNVSCASFHPELPIIITGSEDGTVRIWHSS 259
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 101
effective length of database: 9,877,343
effective search space used: 2419949035
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)