Search to RefSeq (Human) database
Query= 20050322C-004826 (20050322C-004826) 20050322C-004826
(1216 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 307 9e-84
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 301 8e-82
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 290 2e-78
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 239 3e-63
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 199 3e-51
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 178 8e-45
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 177 2e-44
Alignment gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4... 174 1e-43
Alignment gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3... 105 7e-23
Alignment gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3... 105 7e-23
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 307 bits (787), Expect = 9e-84
Identities = 167/284 (58%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 301 bits (770), Expect = 8e-82
Identities = 166/282 (58%), Positives = 189/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLEE L AKE+NV QTLD TL +LN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 290 bits (741), Expect = 2e-78
Identities = 162/281 (57%), Positives = 186/281 (66%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDL 909
KLEK+IDDLE++L K K ++ LD LND+
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 239 bits (610), Expect = 3e-63
Identities = 133/242 (54%), Positives = 149/242 (61%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + + Q +L+ ++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
SDKLK KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 913 CI 918
CI
Sbjct: 247 CI 248
Score = 56.2 bits (134), Expect = 5e-08
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 229 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY E +K +KL+ +E +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 199 bits (506), Expect = 3e-51
Identities = 123/284 (43%), Positives = 149/284 (52%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE AE+K
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAE-----AEQK------------------------- 31
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
+E+++ E ++AA+ ++++ E+ELDRAQER
Sbjct: 32 ------------QAEERSKQLEDELAAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 139
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 140 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 199
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE++L K K ++ LD LND+ I
Sbjct: 200 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 243
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 178 bits (451), Expect = 8e-45
Identities = 101/237 (42%), Positives = 133/237 (56%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 741
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEI 189
Query: 742 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 190 KILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 52.0 bits (123), Expect = 9e-07
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 177 bits (448), Expect = 2e-44
Identities = 110/217 (50%), Positives = 119/217 (54%)
Frame = +1
Query: 268 QEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 447
Q +L+ + AEGDVA LNRRIQLVEEELDRAQER RGM
Sbjct: 21 QRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESERGM 80
Query: 448 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 627
KVIENRAMKDEEKMEIQEMQLKEAKHIAE+ADRKYE+VARKLVI
Sbjct: 81 KVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVI---------------- 124
Query: 628 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 807
LE EL+ SDK+K
Sbjct: 125 -----LEGELERAEER--AEMPASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERTVA 177
Query: 808 KLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 178 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 214
>gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 158
Score = 174 bits (441), Expect = 1e-43
Identities = 97/158 (61%), Positives = 100/158 (63%)
Frame = +1
Query: 445 MKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS 624
MKVIENRAMKDEEKMEIQE+QLKEAKHIAEEADRKY EVARKLV VS
Sbjct: 1 MKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVS 60
Query: 625 ELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXX 804
ELKCGDLEEELKNVTNNL DKLK
Sbjct: 61 ELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTV 120
Query: 805 XKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 121 AKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 158
Score = 51.2 bits (121), Expect = 1e-06
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Frame = +1
Query: 133 EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL-------SE 291
E+AE + +E KC +EEEL ++ LK E +KYSE +E+++L +E
Sbjct: 51 ERAEERVEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAE 110
Query: 292 KKASDAEGDVAALNRRIQLVEEELDRAQE 378
+A AE VA L + I +EE+L +A+E
Sbjct: 111 TRAEFAERTVAKLEKTIDDLEEKLAQAKE 139
Score = 29.6 bits (65), Expect = 4.6
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E + K L+ + +N + + E+ + EK + EEE+ L KLK E +
Sbjct: 57 VEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFA 116
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 366
+ ++ ++ E+K + A+ + L++ + EL+
Sbjct: 117 ERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 156
>gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 105 bits (262), Expect = 7e-23
Identities = 73/219 (33%), Positives = 102/219 (46%)
Frame = +1
Query: 256 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 435
+++ + K+++ +++A DAE L EEELD AQER
Sbjct: 7 MEEVKCKIQVLQQQADDAEERAERLQ-----FEEELDHAQERLTTAL------------- 48
Query: 436 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXX 615
K+ E DE + +++E+QLKEAKHIAEEADRKYEEV RKLVI
Sbjct: 49 ---QKLEEEEKAADESERDMKEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERA 105
Query: 616 XVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXX 795
++E +C + +E+++ + NL +DKLK
Sbjct: 106 ELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTE 165
Query: 796 XXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKT DDLE KL KE+N+ + L TL DLN
Sbjct: 166 RLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQTLLDLN 204
Score = 42.0 bits (97), Expect = 9e-04
Identities = 25/99 (25%), Positives = 51/99 (51%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES +C++ +E++ + + LK D +KYS
Sbjct: 85 EEVPRKLVIIEGDLECTEERAELAES-------RCQETDEQIRLMDQNLKCLSDAEEKYS 137
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 366
+ +E++++ K +AE R + +E+ D
Sbjct: 138 QKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTD 176
>gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 105 bits (262), Expect = 7e-23
Identities = 73/219 (33%), Positives = 102/219 (46%)
Frame = +1
Query: 256 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 435
+++ + K+++ +++A DAE L EEELD AQER
Sbjct: 7 MEEVKCKIQVLQQQADDAEERAERLQ-----FEEELDHAQERLTTAL------------- 48
Query: 436 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXX 615
K+ E DE + +++E+QLKEAKHIAEEADRKYEEV RKLVI
Sbjct: 49 ---QKLEEEEKAADESERDMKEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERA 105
Query: 616 XVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXX 795
++E +C + +E+++ + NL +DKLK
Sbjct: 106 ELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTE 165
Query: 796 XXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKT DDLE KL KE+N+ + L TL DLN
Sbjct: 166 RLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQTLLDLN 204
Score = 42.0 bits (97), Expect = 9e-04
Identities = 25/99 (25%), Positives = 51/99 (51%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES +C++ +E++ + + LK D +KYS
Sbjct: 85 EEVPRKLVIIEGDLECTEERAELAES-------RCQETDEQIRLMDQNLKCLSDAEEKYS 137
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 366
+ +E++++ K +AE R + +E+ D
Sbjct: 138 QKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTD 176
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 104
effective length of database: 11,644,137
effective search space used: 3493241100
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-004826 (20050322C-004826) 20050322C-004826
(1216 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 318 3e-87
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 309 3e-84
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 293 1e-79
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 229 3e-60
Alignment gi|6754784|ref|NP_034994.1| myosin Va [Mus musculus] 46 4e-05
Alignment gi|51712529|ref|XP_132740.3| similar to TATA element modulatory ... 46 4e-05
Alignment gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptid... 45 9e-05
Alignment gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptid... 45 1e-04
Alignment gi|58037313|ref|NP_082757.1| sarcoma antigen NY-SAR-41 [Mus musc... 44 3e-04
Alignment gi|51828465|ref|XP_354614.2| PREDICTED: myosin, heavy polypeptid... 43 3e-04
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 318 bits (816), Expect = 3e-87
Identities = 175/282 (62%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 309 bits (791), Expect = 3e-84
Identities = 168/284 (59%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 293 bits (750), Expect = 1e-79
Identities = 160/282 (56%), Positives = 191/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 241 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 229 bits (583), Expect = 3e-60
Identities = 127/242 (52%), Positives = 145/242 (59%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D + + Q +L+ ++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +EADRKY
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
SDKLK KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 913 CI 918
CI
Sbjct: 247 CI 248
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + + A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELKRAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 229 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY E +K +KL+ +E +A AE V+ L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
Score = 30.8 bits (68), Expect = 1.8
Identities = 21/99 (21%), Positives = 45/99 (45%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + K L+ + +N + + E+ + EK + EEE+ L KLK E +
Sbjct: 148 EVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAE 207
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 366
+ ++ ++ E+K + A+ + L++ + EL+
Sbjct: 208 RTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
>gi|6754784|ref|NP_034994.1| myosin Va [Mus musculus]
Length = 1853
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/164 (22%), Positives = 73/164 (44%)
Frame = +1
Query: 82 KKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLK 261
++ + L + EN I + Q + D++ + KC L +KL E + +E L+
Sbjct: 916 ERYKKLHIGMENKIMQL-QRKVDEQNKDYKC---------LMEKLTNLEGVYNSETEKLR 965
Query: 262 DAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 441
+ E+L+LSE++A A G V +L I + ++L++ +
Sbjct: 966 NDVERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVS 1025
Query: 442 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 573
+K E + +EK + +++AK + E +RK E ++L
Sbjct: 1026 NLK--EENTLLKQEKETLNHRIVEQAKEMTETMERKLVEETKQL 1067
Score = 33.5 bits (75), Expect = 0.27
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Frame = +1
Query: 91 QMLKLDKENAIDRA--EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL-- 258
++L L +E A R EQ S+KK+ EE+ + ++E L LK L + E L
Sbjct: 984 RVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSNLKEENTLLKQEKETLNH 1043
Query: 259 ---KDAQEKLELSEKK----ASDAEGDVAALNRRIQLVEEELDRAQER 381
+ A+E E E+K E D+ R Q + E R +ER
Sbjct: 1044 RIVEQAKEMTETMERKLVEETKQLELDLNDERLRYQNLLNEFSRLEER 1091
>gi|51712529|ref|XP_132740.3| similar to TATA element modulatory
factor 1 [Mus musculus]
Length = 1123
Score = 46.2 bits (108), Expect = 4e-05
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 16/178 (8%)
Frame = +1
Query: 82 KKMQMLKLDKENAIDRAEQAESDKKAA----EEKCKQVEEELTHLQKKLKGTEDELDKYS 249
+K+ +L N I + + D + K K++EEEL HL++ L G E+ ++
Sbjct: 593 EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHR 652
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXX--XXXXXXXXXXXX 423
EN+K +E EK + D+ L + + + LD A
Sbjct: 653 ENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ 712
Query: 424 XXXXXRGMKVIE----------NRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 567
R MK E A + +E + +Q L+ A AE+A + E+ R
Sbjct: 713 EAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLR 770
Score = 34.3 bits (77), Expect = 0.16
Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 1/169 (0%)
Frame = +1
Query: 58 CPAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 237
C +A KK+M+ +K + ++ ++ A+ K+ E+ ++G +E
Sbjct: 548 CKERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQ---------------IQGLMEEG 592
Query: 238 DKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXX 417
+K S+ ++ K D E +A LNR+ + +EEEL ++
Sbjct: 593 EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQ----VLDGKEEVE 648
Query: 418 XXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEA-DRKYEEV 561
+ + + R KD ++++ +L+E + A D Y E+
Sbjct: 649 KQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYREL 697
>gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptide 1,
skeletal muscle, adult [Mus musculus]
Length = 1942
Score = 45.1 bits (105), Expect = 9e-05
Identities = 28/110 (25%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKG------- 222
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++LQ K++
Sbjct: 1055 LERAKRKLEGDLKLAQESTMD----VENDKQQLDEKLKKKEFEMSNLQSKIEDEQALGMQ 1110
Query: 223 TEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
+ ++ + +++ +E++E + AE + L+R ++ + E L+ A
Sbjct: 1111 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1160
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 255
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E +
Sbjct: 1744 IQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QT 1796
Query: 256 LKDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 432
+KD Q +L+ +E+ A + + L R++ +E E++ Q+R
Sbjct: 1797 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVENEQKRNVEAIKGLRKHERRVKE 1856
Query: 433 XXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 549
+ ++ ++ ++ + ++K K AEEA+ +
Sbjct: 1857 LTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEEQ 1895
Score = 39.3 bits (90), Expect = 0.005
Identities = 35/169 (20%), Positives = 66/169 (39%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++ + +++D E A + E D K A+E VE + L +KLK E E+
Sbjct: 1041 LEGSLEQEKKIRMDLERA---KRKLEGDLKLAQESTMDVENDKQQLDEKLKKKEFEMSNL 1097
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
++D Q +KK + L RI+ +EEE++ +
Sbjct: 1098 QSKIEDEQALGMQLQKK-------IKELQARIEELEEEIEAERASRAKAEKQRSDLSREL 1150
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 573
++ E + +E + ++ + EEA ++E A L
Sbjct: 1151 EEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATL 1199
Score = 37.4 bits (85), Expect = 0.019
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYSE 252
+++KM L +K N + Q+E+D A AEE+C Q+ + L+ K+K + + E
Sbjct: 880 LEEKMVALMQEK-NDLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 938
Query: 253 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 432
+ K E + S+ + D+ L + VE+E + +
Sbjct: 939 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAK 998
Query: 433 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 522
+ E +A+++ + + ++Q +E K
Sbjct: 999 LTK-----EKKALQEAHQQTLDDLQAEEDK 1023
Score = 35.8 bits (81), Expect = 0.055
Identities = 35/162 (21%), Positives = 70/162 (43%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E +K++ + L+ + + ++ + E+ KQ+E+E + LQ L+ E L+
Sbjct: 1502 LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQIEQEKSELQAALEEAEASLE-- 1559
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E K + +LEL++ K+ ++R+I +EE+D+ +
Sbjct: 1560 HEEGKILRIQLELNQVKSE--------IDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAE 1611
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
++ + D +MEI QL + +A EA R Y
Sbjct: 1612 IRSRNDAIRLKKKMEGDLNEMEI---QLNHSNRMAAEALRNY 1650
Score = 35.0 bits (79), Expect = 0.094
Identities = 49/274 (17%), Positives = 96/274 (35%), Gaps = 5/274 (1%)
Frame = +1
Query: 55 HCPAMEA---IKKKMQMLKLDKE--NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK 219
H P M+ IK ++ + +KE N + E+A+ + AE K K++EE++ L ++
Sbjct: 833 HWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKMVALMQEKN 892
Query: 220 GTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXX 399
+ ++ +++L DA+E+ + K E + + R + EEE++
Sbjct: 893 DLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAE-DEEEIN----------- 940
Query: 400 XXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI 579
R ++ + KD + +E+ ++++ KH E
Sbjct: 941 ------AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATEN-------------- 980
Query: 580 XXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDK 759
++KN+T + D
Sbjct: 981 ------------------------KVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDD 1016
Query: 760 LKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKE 861
L+ KLE+ +DDLE L Q K+
Sbjct: 1017 LQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKK 1050
>gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptide 4,
skeletal muscle [Mus musculus]
Length = 1967
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/110 (25%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKG------- 222
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++LQ K++
Sbjct: 1080 LERAKRKLEGDLKLAQESTMD----IENDKQQLDEKLKKKEFEMSNLQSKIEDEQALGMQ 1135
Query: 223 TEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
+ ++ + +++ +E++E + AE + L+R ++ + E L+ A
Sbjct: 1136 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1185
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 255
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E +
Sbjct: 1769 IQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME-------QT 1821
Query: 256 LKDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 432
+KD Q +L+ +E+ A + + L R++ +E E++ Q+R
Sbjct: 1822 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVENEQKRNIEAVKGLRKHERRVKE 1881
Query: 433 XXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 549
+ ++ ++ ++ + ++K K AEEA+ +
Sbjct: 1882 LTYQTEEDRKNVLRLQDLVDKLQTKVKAYKRQAEEAEEQ 1920
Score = 39.7 bits (91), Expect = 0.004
Identities = 35/169 (20%), Positives = 66/169 (39%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++ + L++D E A + E D K A+E +E + L +KLK E E+
Sbjct: 1066 LEGSLEQEKKLRMDLERA---KRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNL 1122
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
++D Q +KK + L RI+ +EEE++ +
Sbjct: 1123 QSKIEDEQALGMQLQKK-------IKELQARIEELEEEIEAERASRAKAEKQRSDLSREL 1175
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 573
++ E + +E + ++ + EEA ++E A L
Sbjct: 1176 EEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAAAL 1224
Score = 37.0 bits (84), Expect = 0.025
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYSE 252
+++KM L +K N + QAE+D A AEE+C Q+ + L+ K+K + + E
Sbjct: 905 LEEKMVALMQEK-NDLQLQVQAEADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEE 963
Query: 253 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 432
+ K E + S+ + D+ L + VE+E + +
Sbjct: 964 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDENIAK 1023
Query: 433 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 522
+ E +A+++ + + ++Q +E K
Sbjct: 1024 LTK-----EKKALQEAHQQTLDDLQAEEDK 1048
Score = 36.6 bits (83), Expect = 0.032
Identities = 52/274 (18%), Positives = 97/274 (35%), Gaps = 5/274 (1%)
Frame = +1
Query: 55 HCPAMEA---IKKKMQMLKLDKE--NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK 219
H P M+ IK ++ + +KE N + E+A+ D +E K K++EE++ L ++
Sbjct: 858 HWPWMKLYFKIKPLLKSAETEKEMANMKEDFEKAKEDLAKSEAKRKELEEKMVALMQEKN 917
Query: 220 GTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXX 399
+ ++ ++ L DA+E+ + K E + L R + EEE++
Sbjct: 918 DLQLQVQAEADGLADAEERCDQLIKTKIQLEAKIKELTERAE-DEEEIN----------- 965
Query: 400 XXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI 579
R ++ + KD + +E+ ++++ KH E
Sbjct: 966 ------AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATEN-------------- 1005
Query: 580 XXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDK 759
K +L EE+ + N+ DK
Sbjct: 1006 -----------------KVKNLTEEMAGLDENIAKLTKEKKALQEAHQQTLDDLQAEEDK 1048
Query: 760 LKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKE 861
+ KLE+ +DDLE L Q K+
Sbjct: 1049 VNTLTKAKT-------KLEQQVDDLEGSLEQEKK 1075
Score = 33.5 bits (75), Expect = 0.27
Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVEEELTHLQKKLKGTEDE 234
++ +K+ + ++ +D ++ +D KK E ++E +L H ++
Sbjct: 1615 IDQLKRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEGDLNEMEIQLNHANRQAAEAIRN 1674
Query: 235 LDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVE---EELDRAQERXXXXXXXX 405
L LKD Q L+ + + D + +A + RR L++ EEL + E+
Sbjct: 1675 LRNTQGMLKDTQLHLDDALRGQDDLKEQLAMVERRANLMQAEIEELRASLEQTERSRRVA 1734
Query: 406 XXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLK-EAKHIAEEADRKYEEVARKLV 576
+ + + ++K+E Q++ E + I +EA R EE A+K +
Sbjct: 1735 EQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIVQEA-RNAEEKAKKAI 1791
>gi|58037313|ref|NP_082757.1| sarcoma antigen NY-SAR-41 [Mus musculus]
Length = 1455
Score = 43.5 bits (101), Expect = 3e-04
Identities = 34/175 (19%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKE------NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE 228
ME KK +++++D+ RA Q E ++E+++ L+ L+ +E
Sbjct: 998 MEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSE 1057
Query: 229 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXX 408
EL + ++ ++ EKL+ ++++ + E + + I +++E++R Q+R
Sbjct: 1058 LELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIK 1117
Query: 409 XXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 573
+ + + +E+M+ +L EA+ +A R+ E +A +L
Sbjct: 1118 EQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGEL 1172
Score = 35.8 bits (81), Expect = 0.055
Identities = 23/161 (14%), Positives = 66/161 (40%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 255
+ K+ Q L+ +E++ ++ + E + A + +++ L + + E+D+Y E
Sbjct: 821 VSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEE 880
Query: 256 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 435
L ++++ ++ + ++ L+ + + EL++
Sbjct: 881 LSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTET 940
Query: 436 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEE 558
+ + +EN +++ QL+E + + ++A EE
Sbjct: 941 MQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEE 981
Score = 32.0 bits (71), Expect = 0.79
Identities = 24/105 (22%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKY 246
E IK K+ +L+ K+ RAE+ ++ AEE K + + +KL+ +DE +
Sbjct: 219 ECIKLKVDLLEQSKQGK--RAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQDEEEIL 276
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
NL + +++ + ++K + + ++ L + + ++EE +E+
Sbjct: 277 ERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEK 321
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/134 (17%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +1
Query: 175 KQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVE 354
KQV ++ LQK+ + + ++L K E + A +++L +K + G + +
Sbjct: 819 KQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYK 878
Query: 355 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEM--QLKEAKHI 528
EEL + ++ + M++ + + D+ K E+++ +KE + +
Sbjct: 879 EELSKMEKE---------IIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERL 929
Query: 529 AEEADRKYEEVARK 570
+ + E +K
Sbjct: 930 QHHTETELTETMQK 943
>gi|51828465|ref|XP_354614.2| PREDICTED: myosin, heavy polypeptide 3,
skeletal muscle, embryonic [Mus musculus]
Length = 1937
Score = 43.1 bits (100), Expect = 3e-04
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +1
Query: 106 DKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL 285
D NA ++A++A +D E+ K+ ++ HL++ K E + +KD Q +L+
Sbjct: 1745 DARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QTVKDLQHRLDE 1797
Query: 286 SEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIEN 462
+E+ A + + L RI+ +E EL+ Q+R +
Sbjct: 1798 AEQLALKGGKKQIQKLETRIRELEFELEGEQKRNTESVKGLRKYERRVKELTYQSEEDRK 1857
Query: 463 RAMKDEEKMEIQEMQLKEAKHIAEEADRK 549
++ ++ ++ ++++K K AEEAD +
Sbjct: 1858 NVLRLQDLVDKLQVKVKSYKRQAEEADEQ 1886
Score = 38.9 bits (89), Expect = 0.006
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 7/177 (3%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVEEELTHLQKKLKGTEDE 234
+E +K+ Q + A+D ++ ++ KK E ++E +L+H ++ T
Sbjct: 1581 IEQLKRNYQRTVETMQGALDAEVRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAETIKH 1640
Query: 235 LDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVE---EELDRAQERXXXXXXXX 405
L LKD Q L+ + + D + +A + RR L++ EEL E+
Sbjct: 1641 LRSVQGQLKDTQLHLDDALRGQEDLKEQLAIVERRANLLQAEVEELRATLEQTERARKLA 1700
Query: 406 XXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLV 576
+ + + ++K+E QL+ A R EE A+K +
Sbjct: 1701 EQELLDSNERVQLLHTQNTSLIHTKKKLETDLTQLQSEVEDACRDARNAEEKAKKAI 1757
Score = 36.6 bits (83), Expect = 0.032
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 15/108 (13%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQ-----------VEEELT---H 201
+E K+K++ LKL +E+ +D E+DK+ +E+ K+ VE+E T
Sbjct: 1046 LERNKRKLEGDLKLAQESILD----LENDKQQLDERLKKKDFEYSQLQSKVEDEQTLSLQ 1101
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQ 345
LQKK+K + +++ E ++ + +EK+ SD ++ L+ R++
Sbjct: 1102 LQKKIKELQARIEELEEEIEAERATRAKTEKQRSDYARELEELSERLE 1149
Score = 36.6 bits (83), Expect = 0.032
Identities = 46/283 (16%), Positives = 106/283 (37%), Gaps = 17/283 (6%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++ ++K + ++L+K + E+AE+ + E K +++ ELT ++ ++ E D+
Sbjct: 1520 SIHELEKSRKQMELEKADIQMALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDE 1579
Query: 244 YSENLKDAQEKLELSEKKASDAEGDVAALNRRIQL----------VEEELDRAQERXXXX 393
E LK ++ + + A DAE V + N I+L +E +L A +
Sbjct: 1580 EIEQLKRNYQRTVETMQGALDAE--VRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAET 1637
Query: 394 XXXXXX-------XXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
RG + ++ + E + + + +++E + E+ +R
Sbjct: 1638 IKHLRSVQGQLKDTQLHLDDALRGQEDLKEQLAIVERRANLLQAEVEELRATLEQTERAR 1697
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
+ ++L+ LE +L + + +
Sbjct: 1698 KLAEQELLDSNERVQLLHTQNTSLIHTKKKLETDLTQLQSEVEDACRDARNAEEKAKKAI 1757
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKE 861
+++LK LE+T+ DL+ +L +A++
Sbjct: 1758 TDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQ 1800
Score = 36.2 bits (82), Expect = 0.042
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 1/235 (0%)
Frame = +1
Query: 169 KCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQL 348
K + E+E+ ++++ + T+DEL K K+ +EKL ++ +D +QL
Sbjct: 842 KSAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKLVTLVQEKND-----------LQL 890
Query: 349 VE-EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKH 525
E E L A+ER +K + RA +DEE++ E+ K+ K
Sbjct: 891 QESENLLDAEERCDQLIKAKFQLEAK-------IKEVTERA-EDEEEIN-AELTAKKRKL 941
Query: 526 IAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXX 705
E ++ K + +L + E + E ++KN+T L
Sbjct: 942 EDECSELKKDIDDLELTLAKV------------EKEKHATENKVKNLTEELAGLDETIAK 989
Query: 706 XXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNV 870
D L+ KLE+ +DDLE L Q K+ V
Sbjct: 990 LTREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLESSLEQEKKLRV 1044
Score = 33.1 bits (74), Expect = 0.36
Identities = 25/166 (15%), Positives = 64/166 (38%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 255
+++K + + EN +D AEE+C Q+ + L+ K+K + + E
Sbjct: 882 VQEKNDLQLQESENLLD-----------AEERCDQLIKAKFQLEAKIKEVTERAEDEEEI 930
Query: 256 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 435
+ K E + S+ + D+ L + VE+E + +
Sbjct: 931 NAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEELAGLDETIAKL 990
Query: 436 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 573
R K ++ + + ++ +E ++ + + +++ +++ L
Sbjct: 991 TREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLESSL 1036
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 102
effective length of database: 9,851,042
effective search space used: 2975014684
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)