Search to RefSeq (Human) database
Query= 20050322C-004827 (20050322C-004827) 20050322C-004827
(1224 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 290 1e-78
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 212 5e-55
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 205 5e-53
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 192 4e-49
Alignment gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4... 186 3e-47
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 185 7e-47
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 173 3e-43
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 160 2e-39
Alignment gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3... 110 2e-24
Alignment gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3... 110 2e-24
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 290 bits (742), Expect = 1e-78
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 968 TLNELNCI 991
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 212 bits (539), Expect = 5e-55
Identities = 127/219 (57%), Positives = 132/219 (60%)
Frame = +2
Query: 335 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 514
GLQRELDG+RE REKAEGDVA LNRRIQLVEEELDRAQER R
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 515 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXV 694
GMKVIENRAMKDEEKMEIQEMQLKEAKHIAE+ADRKYE+VARKLVI
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVI-------------- 124
Query: 695 SELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXX 874
LE EL+ SDK+K
Sbjct: 125 -------LEGELERAEER--AEMPASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERT 175
Query: 875 XXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 176 VAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 214
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 205 bits (522), Expect = 5e-53
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 192 bits (488), Expect = 4e-49
Identities = 112/239 (46%), Positives = 131/239 (54%)
Frame = +2
Query: 269 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 448
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 449 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYE 628
ER RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 629 EVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 808
EVARKLVI V+E + LEEEL+ + L
Sbjct: 164 EVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEE 223
Query: 809 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
+KLK KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 158
Score = 186 bits (472), Expect = 3e-47
Identities = 103/158 (65%), Positives = 104/158 (65%)
Frame = +2
Query: 518 MKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS 697
MKVIENRAMKDEEKMEIQE+QLKEAKHIAEEADRKY EVARKLV VS
Sbjct: 1 MKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVS 60
Query: 698 ELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXX 877
ELKCGDLEEELKNVTNNL DKLK
Sbjct: 61 ELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTV 120
Query: 878 XKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 121 AKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 158
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 185 bits (469), Expect = 7e-47
Identities = 106/241 (43%), Positives = 130/241 (53%)
Frame = +2
Query: 269 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 448
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 449 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYE 628
ER RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 629 EVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 808
EVARKLVI V+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 809 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 988
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 989 I 991
+
Sbjct: 284 L 284
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 173 bits (438), Expect = 3e-43
Identities = 99/242 (40%), Positives = 128/242 (52%)
Frame = +2
Query: 266 LEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 445
+EA+K+K+ + E ER ++ E ++AA+ ++++ E+ELDRA
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 446 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 625
QER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKY
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 121
Query: 626 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 805
EEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 806 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
+DKLK KLEKTIDDLE++L K + + + LD LN++
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 241
Query: 986 CI 991
I
Sbjct: 242 SI 243
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 160 bits (405), Expect = 2e-39
Identities = 97/241 (40%), Positives = 124/241 (51%)
Frame = +2
Query: 260 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 439
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 440 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 619
RAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 620 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 799
KYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDR 220
Query: 800 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 979
SDKLK KLEK+IDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 980 L 982
+
Sbjct: 281 M 281
>gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 110 bits (275), Expect = 2e-24
Identities = 82/246 (33%), Positives = 108/246 (43%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++E VK KI LQ++ D ER E+ + E
Sbjct: 1 MAGIATMEEVKCKIQV--------------LQQQADDAEERAERLQ------------FE 34
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELD AQER K+ E DE + +++E+QLKEAKHIAE
Sbjct: 35 EELDHAQERLTTAL----------------QKLEEEEKAADESERDMKEIQLKEAKHIAE 78
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEV RKLVI ++E +C + +E+++ + NL
Sbjct: 79 EADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQ 138
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKT DDLE KL KEEN+ + L Q
Sbjct: 139 KEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQ 198
Query: 968 TLNELN 985
TL +LN
Sbjct: 199 TLLDLN 204
>gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 110 bits (275), Expect = 2e-24
Identities = 82/246 (33%), Positives = 108/246 (43%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++E VK KI LQ++ D ER E+ + E
Sbjct: 1 MAGIATMEEVKCKIQV--------------LQQQADDAEERAERLQ------------FE 34
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELD AQER K+ E DE + +++E+QLKEAKHIAE
Sbjct: 35 EELDHAQERLTTAL----------------QKLEEEEKAADESERDMKEIQLKEAKHIAE 78
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEV RKLVI ++E +C + +E+++ + NL
Sbjct: 79 EADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQ 138
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKT DDLE KL KEEN+ + L Q
Sbjct: 139 KEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQ 198
Query: 968 TLNELN 985
TL +LN
Sbjct: 199 TLLDLN 204
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 104
effective length of database: 11,644,137
effective search space used: 3528173511
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-004827 (20050322C-004827) 20050322C-004827
(1224 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 280 1e-75
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 203 2e-52
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 185 4e-47
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 175 4e-44
Alignment gi|22218336|ref|NP_032935.1| periplakin [Mus musculus] 38 0.015
Alignment gi|51769438|ref|XP_489504.1| similar to periplakin [Mus musculus] 38 0.015
Alignment gi|51764822|ref|XP_196478.4| hypothetical protein XP_196478 [Mus... 34 0.16
Alignment gi|30794220|ref|NP_115999.1| spectrin beta 4 [Mus musculus] 33 0.36
Alignment gi|29243994|ref|NP_808284.1| hypothetical protein 4930562D19 [Mu... 32 0.61
Alignment gi|19745146|ref|NP_034211.1| dystonin isoform e [Mus musculus] 31 1.4
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 280 bits (717), Expect = 1e-75
Identities = 157/248 (63%), Positives = 160/248 (64%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 968 TLNELNCI 991
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 203 bits (516), Expect = 2e-52
Identities = 117/242 (48%), Positives = 137/242 (56%)
Frame = +2
Query: 260 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 439
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 440 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 619
RAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 620 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 799
KYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 800 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 979
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL E
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE 280
Query: 980 LN 985
LN
Sbjct: 281 LN 282
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 185 bits (470), Expect = 4e-47
Identities = 106/241 (43%), Positives = 130/241 (53%)
Frame = +2
Query: 269 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 448
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 449 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYE 628
ER RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 629 EVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 808
EVARKLVI V+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 809 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 988
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 989 I 991
+
Sbjct: 284 L 284
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 175 bits (444), Expect = 4e-44
Identities = 101/242 (41%), Positives = 131/242 (54%)
Frame = +2
Query: 260 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 439
+ L +++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 440 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 619
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 620 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 799
KYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 800 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 979
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLD 280
Query: 980 LN 985
LN
Sbjct: 281 LN 282
>gi|22218336|ref|NP_032935.1| periplakin [Mus musculus]
Length = 1755
Score = 37.7 bits (86), Expect = 0.015
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 4/177 (2%)
Frame = +2
Query: 233 VRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELDGERERREKAEGDVAAL 403
+R A NS++A R+I L+R EL+ ER+ R AE +V L
Sbjct: 1363 LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRL 1422
Query: 404 NRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQL 583
+R+ +E+E + E+ KV+ + + + + QL
Sbjct: 1423 QQRLAALEQEEAKTGEKVTHT-----------------QKVVLQQDPQQTREHALLRAQL 1465
Query: 584 KEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS-ELKCGDLEEELKNVTNNL 751
+E +H + + + E + RKL S +++ GD E+E++ + +L
Sbjct: 1466 EEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSL 1522
Score = 28.9 bits (63), Expect = 6.7
Identities = 22/102 (21%), Positives = 46/102 (45%)
Frame = +2
Query: 338 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 517
L+ +L E++++ EG+ A+ +I+ EEEL AQ+R
Sbjct: 1309 LRIQLSEEQKKQVDLEGERASQEEKIKRKEEEL--AQQRKERVVRQEVVQYEDEPDLRAE 1366
Query: 518 MKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 643
+ N + +++ ++L+ +H E +R+ EE+ R+
Sbjct: 1367 VTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERE 1408
>gi|51769438|ref|XP_489504.1| similar to periplakin [Mus musculus]
Length = 1527
Score = 37.7 bits (86), Expect = 0.015
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 4/177 (2%)
Frame = +2
Query: 233 VRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELDGERERREKAEGDVAAL 403
+R A NS++A R+I L+R EL+ ER+ R AE +V L
Sbjct: 1135 LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRL 1194
Query: 404 NRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQL 583
+R+ +E+E + E+ KV+ + + + + QL
Sbjct: 1195 QQRLAALEQEEAKTGEKVTHT-----------------QKVVLQQDPQQTREHALLRAQL 1237
Query: 584 KEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS-ELKCGDLEEELKNVTNNL 751
+E +H + + + E + RKL S +++ GD E+E++ + +L
Sbjct: 1238 EEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSL 1294
Score = 29.3 bits (64), Expect = 5.2
Identities = 21/102 (20%), Positives = 46/102 (45%)
Frame = +2
Query: 338 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 517
L+ +L E++++ EG+ A+ +I+ EEEL + +ER
Sbjct: 1082 LRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTA 1141
Query: 518 MKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 643
+ ++ +K+ + +L+ +H E +R+ EE+ R+
Sbjct: 1142 FTNSIDAELRQIDKLHV---ELRRLQHRRAELERQLEELERE 1180
>gi|51764822|ref|XP_196478.4| hypothetical protein XP_196478 [Mus
musculus]
Length = 202
Score = 34.3 bits (77), Expect = 0.16
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 338 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ-ERXXXXXXXXXXXXXXXXXXXR 514
LQ L +RE +A+ L +R+Q +E EL+R Q E
Sbjct: 41 LQDRLALQREEARRAKASEDRLKQRLQGLEAELERTQSEGKAIYAEMSRQRQALKEELGT 100
Query: 515 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 646
K +E +E++E + + K AK AE A RK + +L
Sbjct: 101 RSKQLEEEVRSLKEQLETCQREAKTAKEEAERALRKQDGTLAQL 144
>gi|30794220|ref|NP_115999.1| spectrin beta 4 [Mus musculus]
Length = 2561
Score = 33.1 bits (74), Expect = 0.36
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -1
Query: 258 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 139
RP RR R G GG S R S + APAP P PT
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2413
>gi|29243994|ref|NP_808284.1| hypothetical protein 4930562D19 [Mus
musculus]
Length = 616
Score = 32.3 bits (72), Expect = 0.61
Identities = 20/101 (19%), Positives = 45/101 (44%)
Frame = +2
Query: 344 RELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMK 523
++L+ E ERR AE V L ++QL+ LD A ++ R +
Sbjct: 284 QQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGASQQIRWASTELDKEKARVDSMVRHQE 343
Query: 524 VIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 646
++ + ++++ + + +E + +EA+ + E+ +L
Sbjct: 344 SLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRSELEEQL 384
>gi|19745146|ref|NP_034211.1| dystonin isoform e [Mus musculus]
Length = 2611
Score = 31.2 bits (69), Expect = 1.4
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +2
Query: 338 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 517
LQRE+D AE ++ LN ++ +E D ++ER
Sbjct: 1443 LQREVDRVTRAHALAERNIQCLNSQVHASRDEKDLSEERRRLCQRKSDHLKEEFERSH-- 1500
Query: 518 MKVIENRAMKDEEKMEIQEM--QLKEAKHIAEEADRKYEEVARK 643
++++N + E +IQ++ +L+++ AE +K +E+ R+
Sbjct: 1501 AQLLQNIQAEKENNDKIQKLNKELEKSNECAETLKQKVDELTRQ 1544
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 103
effective length of database: 9,824,741
effective search space used: 2986721264
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)