Search to RefSeq (Human) database
Query= 20050322C-005293 (20050322C-005293) 20050322C-005293
(983 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8051623|ref|NP_002525.1| 2',5'-oligoadenylate synthetase 1 is... 431 e-121
Alignment gi|8051621|ref|NP_058132.1| 2',5'-oligoadenylate synthetase 1 is... 431 e-121
Alignment gi|45007007|ref|NP_006178.2| 2'-5'oligoadenylate synthetase 3 [H... 319 2e-87
Alignment gi|8051625|ref|NP_058197.1| 2'-5'oligoadenylate synthetase 2 iso... 284 6e-77
Alignment gi|4505485|ref|NP_002526.1| 2'-5'oligoadenylate synthetase 2 iso... 284 6e-77
Alignment gi|11321577|ref|NP_003724.1| 2'-5'-oligoadenylate synthetase-lik... 199 3e-51
Alignment gi|38016930|ref|NP_937856.1| 2'-5'-oligoadenylate synthetase-lik... 125 4e-29
Alignment gi|52487176|ref|NP_001005207.1| tripartite motif-containing 37 p... 33 0.31
Alignment gi|15147333|ref|NP_056109.1| tripartite motif-containing 37 prot... 33 0.31
Alignment gi|51466566|ref|XP_374705.2| PREDICTED: similar to Hypothetical ... 33 0.31
>gi|8051623|ref|NP_002525.1| 2',5'-oligoadenylate synthetase 1
isoform E16 [Homo sapiens]
Length = 364
Score = 431 bits (1108), Expect = e-121
Identities = 212/297 (71%), Positives = 243/297 (81%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T YKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGSYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KP PVILDP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPTPVILDP 301
>gi|8051621|ref|NP_058132.1| 2',5'-oligoadenylate synthetase 1
isoform E18 [Homo sapiens]
Length = 400
Score = 431 bits (1107), Expect = e-121
Identities = 212/297 (71%), Positives = 243/297 (81%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQIDHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERALSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T YKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGSYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDP 301
>gi|45007007|ref|NP_006178.2| 2'-5'oligoadenylate synthetase 3 [Homo
sapiens]
Length = 1087
Score = 319 bits (817), Expect = 2e-87
Identities = 167/299 (55%), Positives = 208/299 (69%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP DLDKFI + L PN F QV +A+D +C FLKE CF+ + P++
Sbjct: 750 TPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNS--PIKVIKVVKGGSSAK 807
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ+E++F+V FEV +
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVS--KW 865
Query: 454 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPR LSF L+S L Q V+FDVLPAFDALGQ G +P+ ++YV LI S GE
Sbjct: 866 ENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIH---SYSNAGE 922
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
+STCFTELQRDF+ +RPTKLKSLIRLVKHWYQ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQ 982
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G + F+ A+GF+TVLELV ++++LCI+W YN K+ VG +L +QL+KPRP+ILDP
Sbjct: 983 GGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDP 1041
Score = 239 bits (610), Expect = 2e-63
Identities = 129/301 (42%), Positives = 183/301 (60%), Gaps = 6/301 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P ++LD+FI+DHL P+ F+ QVK+AIDI+ L E C +
Sbjct: 412 PTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVH------KASRVSKGGSFGRG 465
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LR D +L++FL T ++DQ R E + E+R QLE+ ++Q + +Q P Q
Sbjct: 466 TDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQV--PSLSLQFPEQN 523
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
P AL F L S L+ + +LPAFDA+GQ + G KPNP++Y +L+ S +EGE
Sbjct: 524 VPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLT---SGCQEGEHK 580
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAW 798
CF EL+R+F+ RP KLK+LI LVKHWY+ K P LPP YALELLT++AW
Sbjct: 581 ACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAW 640
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG + F+ AQGF+TVL LV +H++LC++W Y+ ++P + +L QL+KPRP++LD
Sbjct: 641 EQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHLLGQLRKPRPLVLD 700
Query: 979 P 981
P
Sbjct: 701 P 701
Score = 218 bits (554), Expect = 7e-57
Identities = 125/301 (41%), Positives = 175/301 (58%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LD+F+ L P F + + A+ + L+ER + A R
Sbjct: 6 TPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGR 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQK--FKVTFEVQTP 447
T L+G D++LV+FL S+ DQ R E + E+R LE+ + ++TF P
Sbjct: 66 GTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTF----P 121
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKE 624
Q P AL F L+S L+ ++ ++PAF+ LGQ G KP P++Y L+ C+
Sbjct: 122 EQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGCQG---- 177
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAW 798
GE + CFTEL+R+F+ RP KLK+LI LVKHWY Q C + + LPP YALELLT++AW
Sbjct: 178 GEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAW 237
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG K FS A+G +TVL L+ +H+ LC+FW Y F++P VG++L QLK+PRPVILD
Sbjct: 238 EQGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFLQRQLKRPRPVILD 297
Query: 979 P 981
P
Sbjct: 298 P 298
>gi|8051625|ref|NP_058197.1| 2'-5'oligoadenylate synthetase 2 isoform
p71 [Homo sapiens]
Length = 727
Score = 284 bits (727), Expect = 6e-77
Identities = 156/302 (51%), Positives = 204/302 (67%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++L IFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLGIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DP 981
DP
Sbjct: 637 DP 638
Score = 179 bits (454), Expect = 3e-45
Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C + QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVCRNPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
+ + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLDGS------TIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DP 981
DP
Sbjct: 293 DP 294
>gi|4505485|ref|NP_002526.1| 2'-5'oligoadenylate synthetase 2 isoform
p69 [Homo sapiens]
Length = 687
Score = 284 bits (727), Expect = 6e-77
Identities = 156/302 (51%), Positives = 204/302 (67%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++L IFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLGIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DP 981
DP
Sbjct: 637 DP 638
Score = 179 bits (454), Expect = 3e-45
Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C + QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVCRNPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
+ + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLDGS------TIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DP 981
DP
Sbjct: 293 DP 294
>gi|11321577|ref|NP_003724.1| 2'-5'-oligoadenylate synthetase-like
isoform a [Homo sapiens]
Length = 514
Score = 199 bits (505), Expect = 3e-51
Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 7/303 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQ---TCKKPHGNKLPPQYALELLTVYA 795
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ + P N LPP YALELLT+YA
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRAN-LPPLYALELLTIYA 243
Query: 796 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G+ + + F +GF TV++L+L+++ +CI+W YY N ++ + +QLKK RP+I
Sbjct: 244 WEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKERPII 303
Query: 973 LDP 981
LDP
Sbjct: 304 LDP 306
>gi|38016930|ref|NP_937856.1| 2'-5'-oligoadenylate synthetase-like
isoform b [Homo sapiens]
Length = 255
Score = 125 bits (315), Expect = 4e-29
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ 765
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ P + PQ
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQAHHPGSGRPHPQ 231
>gi|52487176|ref|NP_001005207.1| tripartite motif-containing 37
protein [Homo sapiens]
Length = 964
Score = 33.1 bits (74), Expect = 0.31
Identities = 16/78 (20%), Positives = 37/78 (47%)
Frame = +1
Query: 307 LVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENPRALSFVLS 486
L+ + + TS + +L E +QE+ QL +C K + + E+ Q+ R
Sbjct: 201 LITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFV 260
Query: 487 SPQLQQEVEFDVLPAFDA 540
+ + + +++P++D+
Sbjct: 261 TTPVPPDFTSELVPSYDS 278
>gi|15147333|ref|NP_056109.1| tripartite motif-containing 37 protein
[Homo sapiens]
Length = 964
Score = 33.1 bits (74), Expect = 0.31
Identities = 16/78 (20%), Positives = 37/78 (47%)
Frame = +1
Query: 307 LVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENPRALSFVLS 486
L+ + + TS + +L E +QE+ QL +C K + + E+ Q+ R
Sbjct: 201 LITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFV 260
Query: 487 SPQLQQEVEFDVLPAFDA 540
+ + + +++P++D+
Sbjct: 261 TTPVPPDFTSELVPSYDS 278
>gi|51466566|ref|XP_374705.2| PREDICTED: similar to Hypothetical
protein CBG17606 [Homo sapiens]
Length = 1693
Score = 33.1 bits (74), Expect = 0.31
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = +3
Query: 39 PARRSTPPTALLPQRRDGYPC*GPRQVHRRPPPAKHMFPNAGQGSHRHRLRFPEGEVLPG 218
PAR + P P R C G R R P P + G G RHR E PG
Sbjct: 454 PARGAGRPLTCTPGREPPLGCTGFRTGSREPSPLRADAKQHGPGRTRHRTAQQEMGPTPG 513
Query: 219 DRRP 230
R P
Sbjct: 514 PRDP 517
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 102
effective length of database: 11,701,773
effective search space used: 2632898925
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-005293 (20050322C-005293) 20050322C-005293
(983 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560524|ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G ... 379 e-105
Alignment gi|21630283|ref|NP_660212.1| 2'-5' oligoadenylate synthetase 1A ... 376 e-104
Alignment gi|21553117|ref|NP_660135.1| 2'-5'oligoadenylate synthetase 1F [... 327 9e-90
Alignment gi|21644585|ref|NP_660261.1| 2'-5' oligoadenylate synthetase 3 [... 306 2e-83
Alignment gi|15809044|ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C ... 297 8e-81
Alignment gi|21644597|ref|NP_660262.1| 2'-5' oligoadenylate synthetase 2 [... 293 1e-79
Alignment gi|21630287|ref|NP_660211.1| 2'-5' oligoadenylate synthetase 1E ... 290 7e-79
Alignment gi|19527108|ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D ... 287 6e-78
Alignment gi|21699072|ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H ... 275 2e-74
Alignment gi|21728364|ref|NP_035983.1| 2'-5' oligoadenylate synthetase 1B ... 237 9e-63
>gi|31560524|ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G
[Mus musculus]
Length = 367
Score = 379 bits (972), Expect = e-105
Identities = 190/295 (64%), Positives = 223/295 (75%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+GRSDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG + KPNP IY LI EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFS 188
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDP
Sbjct: 249 NEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHKEVSKYLHRQLRKARPVILDP 303
>gi|21630283|ref|NP_660212.1| 2'-5' oligoadenylate synthetase 1A
[Mus musculus]
Length = 367
Score = 376 bits (965), Expect = e-104
Identities = 187/295 (63%), Positives = 223/295 (75%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+G+SDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGKSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG KP+P IY LI+EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHVNTSSKPDPRIYAILIEECTSLGKDGEFS 188
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTV+AWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVFAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDP
Sbjct: 249 YEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHQEVSKYLHRQLRKARPVILDP 303
>gi|21553117|ref|NP_660135.1| 2'-5'oligoadenylate synthetase 1F [Mus
musculus]
Length = 364
Score = 327 bits (837), Expect = 9e-90
Identities = 169/301 (56%), Positives = 208/301 (69%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP +LDKFI DHLLP++ F + + +D + FLKERCFQG PVR
Sbjct: 8 TPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ +S+A +VVFL LTSFE+QL+ R EFI+EIR+ L Q E+ FKV FEVQ+ +
Sbjct: 68 HTALKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDAL-----GQWTPGYKPNPEIYVQLIKECKSLG 618
N R+LSF LSSP+LQQEVEFDV PA+D L ++ Y N +IY QLI EC +L
Sbjct: 128 PNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNKYAELYLYN-KIYAQLIHECTTLK 186
Query: 619 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + FL +R KLK+LIRLVKHWYQ CK+ G LPPQYALELLTVYAW
Sbjct: 187 KEGEFSICFTDLHQSFLEDRAPKLKNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAW 246
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
E GS +F+TAQGF+TVLELV K+K L I+W YY+F+ V YL + L+K RPVILD
Sbjct: 247 ESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTVYYDFRKTKVSEYLHKMLQKVRPVILD 306
Query: 979 P 981
P
Sbjct: 307 P 307
>gi|21644585|ref|NP_660261.1| 2'-5' oligoadenylate synthetase 3 [Mus
musculus]
Length = 1138
Score = 306 bits (783), Expect = 2e-83
Identities = 159/299 (53%), Positives = 201/299 (67%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
T DLDKFI + L PN F TQVK A+D +C FLKE CF+ + ++
Sbjct: 801 TLAEDLDKFISEFLQPNRHFLTQVKRAVDTICSFLKENCFRNST--IKVLKVVKGGSSAK 858
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRSDADLVVFL+ F +Q R E I EI+ LEACQ+ F V FEV ++
Sbjct: 859 GTALQGRSDADLVVFLSCFRQFSEQGSHRAEIISEIQAHLEACQQMHSFDVKFEVS--KR 916
Query: 454 ENPRALSFVLSSPQL-QQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
+NPR LSF L+S L Q V+FDVLPAFDALGQ G +P+P +Y LI C + G E
Sbjct: 917 KNPRVLSFTLTSQTLLDQSVDFDVLPAFDALGQLRSGSRPDPRVYTDLIHSCSNAG---E 973
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FSTCFTELQRDF+ +RPTKLKSLIRLVK+WYQ C K K LPPQ+ LELLTVYAWEQ
Sbjct: 974 FSTCFTELQRDFITSRPTKLKSLIRLVKYWYQQCNKTIKGKGSLPPQHGLELLTVYAWEQ 1033
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G F+ A+GF+TVLEL++++++LC++W Y+ ++ +G +L QL+KPRPVILDP
Sbjct: 1034 GGQNPQFNMAEGFRTVLELIVQYRQLCVYWTINYSAEDKTIGDFLKMQLRKPRPVILDP 1092
Score = 209 bits (533), Expect = 2e-54
Identities = 124/298 (41%), Positives = 166/298 (55%), Gaps = 2/298 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDK + +L P F V+ A+ + L++ +G+ P R
Sbjct: 6 TPAGALDKLVAHNLHPAPEFTAAVRGALGSLNITLQQHRARGSQRP-RVIRIAKGGAYAR 64
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRG +D +LV+FL SF DQ E + +R LE+ +TFE +
Sbjct: 65 GTALRGGTDVELVIFLDCFQSFGDQKTCHSETLGAMRMLLESWGGHPGPGLTFEFSQSKA 124
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 630
R L F L+S + ++ ++PAFD LGQ G KP P +Y L+ C++ GE
Sbjct: 125 S--RILQFRLASADGEHWIDVSLVPAFDVLGQPRSGVKPTPNVYSSLLSSHCQA----GE 178
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNKLPPQYALELLTVYAWEQG 807
+S CFTE +++F+ RP KLK+LI LVKHWY Q + LPP YALELLT++AWEQG
Sbjct: 179 YSACFTEPRKNFVNTRPAKLKNLILLVKHWYHQVQTRAVRATLPPSYALELLTIFAWEQG 238
Query: 808 SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
GK FS AQG +TVL L+ K LCIFW Y F++P VG +L QLK+PRPVILDP
Sbjct: 239 CGKDSFSLAQGLRTVLALIQHSKYLCIFWTENYGFEDPAVGEFLRRQLKRPRPVILDP 296
Score = 206 bits (524), Expect = 2e-53
Identities = 114/302 (37%), Positives = 172/302 (56%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P +DLD FI+DHL P+ F+ QVK+AID + L+E+ +
Sbjct: 464 PSKDLDCFIQDHLRPSPQFQQQVKQAIDAILCCLREKSVY------KVLRVSKGGSFGRG 517
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG D +LV+F L F+ Q + E +++++ QL + ++ + ++
Sbjct: 518 TDLRGSCDVELVIFYKTLGDFKGQKPHQAEILRDMQAQLRHWCQNPVPGLSLQFI---EQ 574
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEF 633
P AL L+S L V+ VLPAFDA+G G KP P++Y L+ C++ GE
Sbjct: 575 KPNALQLQLASTDLSNRVDLSVLPAFDAVGPLKSGTKPQPQVYSSLLSSGCQA----GEH 630
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPH------GNKLPPQYALELLTVYA 795
+ CF EL+R+F+ P KLKSL+ LVKHWY+ + G+ PP YALELLT++A
Sbjct: 631 AACFAELRRNFINTCPPKLKSLMLLVKHWYRQVVTRYKGGEAAGDAPPPAYALELLTIFA 690
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG G+ FS A+G +T+L L+ +H+ LCI+W Y+ ++P + +L QL+K RP++L
Sbjct: 691 WEQGCGEQKFSLAEGLRTILRLIQQHQSLCIYWTVNYSVQDPAIRAHLLCQLRKARPLVL 750
Query: 976 DP 981
DP
Sbjct: 751 DP 752
>gi|15809044|ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C
[Mus musculus]
Length = 362
Score = 297 bits (760), Expect = 8e-81
Identities = 154/298 (51%), Positives = 202/298 (67%), Gaps = 5/298 (1%)
Frame = +1
Query: 103 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 282
R+LD+FI D+L P+T F T+++ ID + FLKERCFQG A PVR T
Sbjct: 11 RELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTA 70
Query: 283 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 462
L+G+S+A +V+F LTSFE+QL+ R EF++EI++ L Q+E+ FKV FEVQ+ + N
Sbjct: 71 LKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNS 130
Query: 463 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE----IYVQLIKECKSLGKEGE 630
R+LSF LSSP+LQQEVEFDV PA+D L + P+ +Y QLI EC +L KEG+
Sbjct: 131 RSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGD 190
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFT+L ++F+R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY WE +
Sbjct: 191 FSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSN 250
Query: 811 -GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+ +TA+ F+T LELV +K L I+W YY+F++ V YL QLKK RP+ILDP
Sbjct: 251 KNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDP 308
>gi|21644597|ref|NP_660262.1| 2'-5' oligoadenylate synthetase 2 [Mus
musculus]
Length = 751
Score = 293 bits (750), Expect = 1e-79
Identities = 154/299 (51%), Positives = 202/299 (67%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP L+KFI+D L PN F Q+KEA+DI+C FLK CF + V
Sbjct: 382 TPSHLLNKFIKDFLQPNKLFLKQIKEAVDIICSFLKNVCFLNSDTKV--LKTVKGGSTAK 439
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDAD+VVFL+ L S++ R +F+QEI++QLE + Q+++VTFE+ +
Sbjct: 440 GTALKRGSDADIVVFLSSLESYDSLKTNRSQFVQEIQKQLEEFVQAQEWEVTFEIS--KW 497
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KEGE 630
+ PR LSF L S L + VEFDVLPA+DALGQ + PE Y LI+ C S KEGE
Sbjct: 498 KAPRVLSFTLKSKTLNESVEFDVLPAYDALGQLRSDFTLRPEAYKDLIELCASQDIKEGE 557
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FS CFTELQR+F++ RPTKLKSL+RL+KHWY+ ++ K LPP+YALELLTVYAWEQ
Sbjct: 558 FSICFTELQRNFIQTRPTKLKSLLRLIKHWYKQYERKMKPKASLPPKYALELLTVYAWEQ 617
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
GSG DF A+GF+TVL+LV+K+++LCIFW YNF+ + ++L Q++K RPVILDP
Sbjct: 618 GSGTDDFDIAEGFRTVLDLVIKYRQLCIFWTVNYNFEEEYMRKFLLTQIQKKRPVILDP 676
Score = 165 bits (418), Expect = 3e-41
Identities = 106/299 (35%), Positives = 155/299 (51%), Gaps = 4/299 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P + L+ +I+++L PN Q+ +A+D + L+ + PV+
Sbjct: 61 PSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQI------PVKEVAKGGSYGRE-- 112
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG SD LV+F+ F+DQ++ ++ ++ I L+ +K+ +
Sbjct: 113 TALRGCSDGTLVLFMDCFQQFQDQIKYQDAYLDVIELWLKIHEKKSV------------K 160
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEGEF 633
+ AL +S P Q + +LP F+ L P+ +YV L K + GEF
Sbjct: 161 HEHALVVQVSVPG--QRILLQLLPVFNPLRS---NENPSSCVYVDLKKSMDQVRASPGEF 215
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ---YALELLTVYAWEQ 804
S CFT LQ+ F + P +LK LI LVKHWY+ C++ PPQ YALELLTVYAWEQ
Sbjct: 216 SDCFTTLQQRFFKKYPRRLKDLILLVKHWYEQCQEKWKTP-PPQPLLYALELLTVYAWEQ 274
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G DF AQG +TVL L+ + +LC++W YNF++ V L QL+ RPVILDP
Sbjct: 275 GCQAEDFDMAQGVRTVLRLIQRPTELCVYWTVNYNFEDETVRNILLHQLRSQRPVILDP 333
>gi|21630287|ref|NP_660211.1| 2'-5' oligoadenylate synthetase 1E
[Mus musculus]
Length = 356
Score = 290 bits (743), Expect = 7e-79
Identities = 158/303 (52%), Positives = 200/303 (66%), Gaps = 7/303 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LD FIED LLP+T F T+++ ID + FLKERCFQG P+R
Sbjct: 8 TPIWRLDNFIEDQLLPDTTFLTELRADIDSISAFLKERCFQGATHPMRVARVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
L+GRS+A++VVF LTSFEDQL+ ++ FI+EIR+ L Q+E+ K+ FEVQ+ +
Sbjct: 68 HNALKGRSEANMVVFFNDLTSFEDQLKWQQVFIEEIRKHLLQLQQEKPCKLKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE------IYVQLIKECKSL 615
N R+L+F L SP+ QQEVEFDV PA+DAL + GY + E +Y QLI EC +L
Sbjct: 128 PNTRSLTFKLCSPERQQEVEFDVQPAYDAL--YEGGYCKSFESINYNKVYAQLIHECTTL 185
Query: 616 GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYA 795
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY
Sbjct: 186 EKEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYV 245
Query: 796 WEQG-SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G AQ F+TVLELV K+K L I+W +Y+F+ P + YL Q+KK RP+I
Sbjct: 246 WEFGVQDSFGLHAAQCFRTVLELVTKYKCLLIYWTWFYDFR-PEISDYLHGQIKKARPLI 304
Query: 973 LDP 981
LDP
Sbjct: 305 LDP 307
>gi|19527108|ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D
[Mus musculus]
Length = 361
Score = 287 bits (735), Expect = 6e-78
Identities = 159/302 (52%), Positives = 200/302 (66%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LDKFIED LLP+T F T+++ ID + FL ERCFQG A PVR
Sbjct: 8 TPIWRLDKFIEDQLLPDTTFLTELRADIDSISAFLMERCFQGAAHPVRVSRVVMGGCYNE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+A++VVFL LTSFEDQ + FI+EI R L Q+E+ K+ FEVQ+P++
Sbjct: 68 YTVLKGRSEANMVVFLINLTSFEDQFNGQVVFIEEIWRHLLQLQQEKLCKLKFEVQSPKE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKP-----NPEIYVQLIKECKSLG 618
N R LSF LS P+ Q E+EFDV PA+DAL + +KP ++Y QL EC +L
Sbjct: 128 PNSRFLSFKLSCPERQHELEFDVQPAYDALYE-VRHFKPFDSSNYNKVYAQLTHECTTLE 186
Query: 619 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY W
Sbjct: 187 KEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYVW 246
Query: 799 EQGSGKT-DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
E G + TAQ F+TVLELV K+K+L I+W Y+F++ + YL Q+KK RP+IL
Sbjct: 247 EYGIHENPGLHTAQCFRTVLELVTKYKRLRIYWTWCYDFQHE-ISDYLQGQIKKARPLIL 305
Query: 976 DP 981
DP
Sbjct: 306 DP 307
>gi|21699072|ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H
[Mus musculus]
Length = 369
Score = 275 bits (704), Expect = 2e-74
Identities = 148/301 (49%), Positives = 197/301 (65%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFIE HLL + F T+++ ++ + FLKERCFQG A P+R
Sbjct: 15 TPAWRLDKFIEGHLLGDITFLTELRTDVNSISAFLKERCFQGAAHPMRVSRVVMGGSYNR 74
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+ DL+VF LT F+DQ +L++E I+EI++ L Q+E++ + F+VQ+ Q
Sbjct: 75 YTVLKGRSEVDLLVFFNNLTCFDDQFKLQKEVIEEIQKHLCQFQQEKRLREKFKVQSSDQ 134
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI----YVQLIKECKSLGK 621
N R++SF LS P+ QQEVEF + A+DAL + N EI Y +LI+EC LGK
Sbjct: 135 PNFRSVSFKLSYPKFQQEVEFHMQTAYDALYEVRRKENHNCEIYNKVYARLIRECTMLGK 194
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWE 801
EGEF+ CF ELQ+DFL RP +LK+LI LVKHWYQ CK+ LPPQYALELLTVYAWE
Sbjct: 195 EGEFNICFMELQQDFLWKRPCELKNLICLVKHWYQLCKEKLREPLPPQYALELLTVYAWE 254
Query: 802 -QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
+ K + TA+GF+TVLEL+ K+ L I+W YY+ + V YL Q+K+ P+ILD
Sbjct: 255 HELPDKHETQTARGFRTVLELITKYLCLRIYWTLYYDVLHEQVNAYLYSQVKRVSPLILD 314
Query: 979 P 981
P
Sbjct: 315 P 315
>gi|21728364|ref|NP_035983.1| 2'-5' oligoadenylate synthetase 1B
[Mus musculus]
Length = 251
Score = 237 bits (604), Expect = 9e-63
Identities = 135/249 (54%), Positives = 162/249 (65%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIE+HL P+T F ++E ID +C LK+R F+G PVR
Sbjct: 9 PASKLDKFIENHL-PDTSFCADLREVIDALCALLKDRSFRG---PVRRMRASKGVKGKG- 63
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T L+GRSDADLVVFL LTSFEDQL + I+EI++QL Q E++ V FEV + R
Sbjct: 64 TALKGRSDADLVVFLNNLTSFEDQLNQQGVLIKEIKKQLCEVQHERRCGVKFEVHSLRSP 123
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N RALSF LS+P L +EV+FDVLPA+D L KPN + Y LI + GKEG+ S
Sbjct: 124 NSRALSFKLSAPDLLKEVKFDVLPAYDLLDHLNILKKPNQQFYANLISGVPA-GKEGKLS 182
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
CF LQ+ FL RPTKLK LIRLV HWYQ CK+ G+ LPPQYALELLT+ AWE GS
Sbjct: 183 ICFMGLQKYFLNCRPTKLKRLIRLVTHWYQLCKEKLGDPLPPQYALELLTLDAWEYGSRV 242
Query: 817 TDFSTAQGF 843
T F+TAQGF
Sbjct: 243 TKFNTAQGF 251
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 101
effective length of database: 9,877,343
effective search space used: 2232279518
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)