Search to RefSeq (Human) database
Query= 20050322C-006005 (20050322C-006005) 20050322C-006005
(1281 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8923911|ref|NP_061167.1| LanC lantibiotic synthetase componen... 538 e-153
Alignment gi|5174445|ref|NP_006046.1| lanthionine synthetase C-like protei... 274 1e-73
Alignment gi|38348330|ref|NP_940913.1| LanC lantibiotic synthetase compone... 83 5e-16
Alignment gi|51467382|ref|XP_372112.3| PREDICTED: similar to phosphoglucom... 36 0.053
Alignment gi|51460853|ref|XP_498887.1| PREDICTED: hypothetical protein XP_... 36 0.069
Alignment gi|51467421|ref|XP_209423.4| PREDICTED: similar to bA395L14.5 (n... 34 0.20
Alignment gi|34222203|ref|NP_694964.2| CREBBP/EP300 inhibitor 2 [Homo sapi... 34 0.26
Alignment gi|51467801|ref|XP_373470.2| PREDICTED: hypothetical protein XP_... 34 0.26
Alignment gi|51464971|ref|XP_499004.1| PREDICTED: hypothetical protein XP_... 34 0.26
Alignment gi|51464961|ref|XP_499003.1| PREDICTED: hypothetical protein XP_... 34 0.26
>gi|8923911|ref|NP_061167.1| LanC lantibiotic synthetase component
C-like 2 [Homo sapiens]
Length = 450
Score = 538 bits (1387), Expect = e-153
Identities = 266/329 (80%), Positives = 286/329 (86%), Gaps = 5/329 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 455
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 456 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 635
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 636 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 815
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 816 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLSK 995
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV+AIIESGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 996 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1175
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1176 FRSGNYPSSLSNETDRLVNWVPRGRPGSI 1262
FRSGNYPSSLSNETDRLV+W G PG I
Sbjct: 301 FRSGNYPSSLSNETDRLVHWC-HGAPGVI 328
>gi|5174445|ref|NP_006046.1| lanthionine synthetase C-like protein 1
[Homo sapiens]
Length = 399
Score = 274 bits (700), Expect = 1e-73
Identities = 136/306 (44%), Positives = 197/306 (64%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVNWVPR 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LV+W
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWC-H 277
Query: 1245 GRPGSI 1262
G PG I
Sbjct: 278 GAPGVI 283
>gi|38348330|ref|NP_940913.1| LanC lantibiotic synthetase component
C-like 3 [Homo sapiens]
Length = 388
Score = 82.8 bits (203), Expect = 5e-16
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 7/191 (3%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI++SGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + + + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHL-KPSDRELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVNWVPRGRPG 1256
LV+W G PG
Sbjct: 290 LVHWC-HGAPG 299
>gi|51467382|ref|XP_372112.3| PREDICTED: similar to
phosphoglucomutase 5 [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.053
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3
Query: 226 RRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 101
RRG GP+A +A GA E G R GG PA + GPR
Sbjct: 148 RRGGAGGPQAGGCRAQGADLLERGPRARGGVPARSQAGGGPR 189
>gi|51460853|ref|XP_498887.1| PREDICTED: hypothetical protein
XP_498887 [Homo sapiens]
Length = 304
Score = 35.8 bits (81), Expect = 0.069
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 298 SPMSAARPALRGAARYGERAGTNLRRG-APAGPRASPGKAAGAQRCEAGTRGCGGRPAP 125
SP AA R AA G G+ L AP GP +PG + AGTRG G AP
Sbjct: 137 SPGPAAERGGRDAALRGRPWGSGLAAAPAPLGPAPAPGGSGRGAASRAGTRGLRGARAP 195
>gi|51467421|ref|XP_209423.4| PREDICTED: similar to bA395L14.5
(novel phosphoglucomutase like protein) [Homo sapiens]
Length = 801
Score = 34.3 bits (77), Expect = 0.20
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -3
Query: 319 QSLRDMVSPMSAARPALRGAARYGERAGTNLR--RGAPAGPRASPGKAAGAQRCEAGTRG 146
Q R +P+ A L GA E A R RGA G A+P G + AGTRG
Sbjct: 186 QEPRHPSTPLPAEPGTLPGAPCGPEAAFPRRRSWRGACPGSWAAPAWGEGPRGAGAGTRG 245
Query: 145 CGGRPAPPRLRTGPRGGCG 89
CG + G G G
Sbjct: 246 CGDDRPSANAQAGGSGATG 264
>gi|34222203|ref|NP_694964.2| CREBBP/EP300 inhibitor 2 [Homo
sapiens]
Length = 174
Score = 33.9 bits (76), Expect = 0.26
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 292 MSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAP---P 122
M+AAR A AAR A L R A AG R SP AA + A G P P
Sbjct: 1 MAAARAAPAAAARGAPVAAAALARAAAAG-RESPAAAAAREARMAEVARLLGEPVDEEGP 59
Query: 121 RLRTGPRGGCGGIAA 77
R R G GG+AA
Sbjct: 60 EGRPRSRHGNGGLAA 74
>gi|51467801|ref|XP_373470.2| PREDICTED: hypothetical protein
XP_373470 [Homo sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.26
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 87 PPQPPRGPVRSRG---GAGRPPQPRVPASQR 170
PP RGP +R GAGRPP P+ PA QR
Sbjct: 165 PPLATRGPEEARERPPGAGRPPLPQQPAGQR 195
>gi|51464971|ref|XP_499004.1| PREDICTED: hypothetical protein
XP_499004 [Homo sapiens]
Length = 359
Score = 33.9 bits (76), Expect = 0.26
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Frame = -3
Query: 352 SSISASQSPWNQSLR--DMVSPMSAARPALRGAA-------RYGERAGTNLRRGAPAGPR 200
+SIS+ P ++R D + + A R A A R ++A + RR A R
Sbjct: 72 TSISSETVPEALTIRTEDTWASLGAGRAAAAAAPAASTPQPRVPQKAASAPRRAALRPGR 131
Query: 199 ASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 77
A PG A Q C RG G P P R GP G +A
Sbjct: 132 APPGPGAPNQSC----RGSGLGPTPARRAAGPAAPVGRSSA 168
>gi|51464961|ref|XP_499003.1| PREDICTED: hypothetical protein
XP_499003 [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.26
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -3
Query: 295 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 116
P +RP A R GER T+LRR A RA + + A RP P R
Sbjct: 203 PARPSRP--HPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRT 260
Query: 115 RTGPRGGCG 89
G +G CG
Sbjct: 261 ARGCQGECG 269
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 104
effective length of database: 11,644,137
effective search space used: 3749412114
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-006005 (20050322C-006005) 20050322C-006005
(1281 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19526936|ref|NP_598498.1| LanC (bacterial lantibiotic synthet... 513 e-145
Alignment gi|21489937|ref|NP_067270.1| LanC (bacterial lantibiotic synthet... 278 4e-75
Alignment gi|27734148|ref|NP_775590.1| RIKEN cDNA 6030463G20 [Mus musculus] 85 1e-16
Alignment gi|33468851|ref|NP_031762.1| procollagen, type IV, alpha 5 [Mus ... 37 0.026
Alignment gi|51761828|ref|XP_485984.1| similar to kynurenine aminotransfer... 35 0.100
Alignment gi|31543172|ref|NP_659162.2| DNA segment, Chr 5, Wayne State Uni... 35 0.13
Alignment gi|51763802|ref|XP_133186.4| similar to zinc finger protein 499 ... 34 0.22
Alignment gi|33859526|ref|NP_034060.1| procollagen, type III, alpha 1 [Mus... 33 0.29
Alignment gi|34328045|ref|NP_031761.1| procollagen, type IV, alpha 4 [Mus ... 33 0.38
Alignment gi|6680972|ref|NP_031764.1| procollagen, type VII, alpha 1 [Mus ... 33 0.50
>gi|19526936|ref|NP_598498.1| LanC (bacterial lantibiotic synthetase
component C)-like 2 [Mus musculus]
Length = 450
Score = 513 bits (1321), Expect = e-145
Identities = 257/330 (77%), Positives = 283/330 (85%), Gaps = 6/330 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 452
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 453 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 632
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 633 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 812
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 813 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLS 992
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+GPG V E+AIKEVV AIIESGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 993 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1172
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1173 RFRSGNYPSSLSNETDRLVNWVPRGRPGSI 1262
+FRSGNYPSSLSNETDRLV+W G PG I
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWC-HGAPGVI 328
>gi|21489937|ref|NP_067270.1| LanC (bacterial lantibiotic synthetase
component C)-like 1 [Mus musculus]
Length = 399
Score = 278 bits (712), Expect = 4e-75
Identities = 139/306 (45%), Positives = 200/306 (65%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVNWVPR 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LV+W
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWC-H 277
Query: 1245 GRPGSI 1262
G PG I
Sbjct: 278 GAPGVI 283
>gi|27734148|ref|NP_775590.1| RIKEN cDNA 6030463G20 [Mus musculus]
Length = 420
Score = 84.7 bits (208), Expect = 1e-16
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 7/191 (3%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIESGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI++SGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + + + E+V+ S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHL-KPSDRELVRQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVNWVPRGRPG 1256
LV+W G PG
Sbjct: 290 LVHWC-HGAPG 299
>gi|33468851|ref|NP_031762.1| procollagen, type IV, alpha 5 [Mus
musculus]
Length = 1691
Score = 37.0 bits (84), Expect = 0.026
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = -3
Query: 214 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLR-----TGPRG--GCGGI 83
P GP SPG+A + G +G GRP PP + GPRG G GGI
Sbjct: 1236 PPGPPGSPGQALEGPKGNPGPQGPPGRPGPPGFQGPPGTEGPRGPPGNGGI 1286
>gi|51761828|ref|XP_485984.1| similar to kynurenine aminotransferase
III [Mus musculus]
Length = 405
Score = 35.0 bits (79), Expect = 0.100
Identities = 25/64 (39%), Positives = 29/64 (45%)
Frame = -3
Query: 295 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 116
P A P RG RAG +R AP+GP S AG + AG+RG G PPR
Sbjct: 86 PSRAPMPLKRGPPP--RRAGPPPKRAAPSGPARS---GAGIRGRAAGSRGRDGYGGPPRR 140
Query: 115 RTGP 104
P
Sbjct: 141 ELPP 144
>gi|31543172|ref|NP_659162.2| DNA segment, Chr 5, Wayne State
University 46, expressed [Mus musculus]
Length = 665
Score = 34.7 bits (78), Expect = 0.13
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Frame = -3
Query: 346 ISASQSPWNQSLRDMVSPMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQR 167
+ + Q + LRD R GAA G G P G A+P +R
Sbjct: 32 VQSHQEAASGELRDGTEHGPGPRAHSAGAAASGGGGPQAQAHGEPHGRAAAPADVGEERR 91
Query: 166 CEAGTRGCGGRPAPPRLRTG-----PRGGCGG 86
GT G PAPPR R G P GG GG
Sbjct: 92 GGGGTD--LGPPAPPRPRNGYQPHRPPGGGGG 121
>gi|51763802|ref|XP_133186.4| similar to zinc finger protein 499 [Mus
musculus]
Length = 634
Score = 33.9 bits (76), Expect = 0.22
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +1
Query: 811 CSSREPSSAATRTFPMSCFSAARATCTPCSM*TRRWVRA--PCANQPSKRWSM-----LL 969
CS+ P SAA + +R TC C + +RRW RA P P + W + L
Sbjct: 44 CSASAPGSAAFKL-------TSRRTCRTCCLRSRRWGRAGIPLPQSPREGWGVPGAARLR 96
Query: 970 LNRARLCQRKK 1002
+R C+ K+
Sbjct: 97 EDRCARCEHKR 107
>gi|33859526|ref|NP_034060.1| procollagen, type III, alpha 1 [Mus
musculus]
Length = 1464
Score = 33.5 bits (75), Expect = 0.29
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = -3
Query: 214 PAGPRASPGK--------AAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 89
P GPR +PG+ AAGA R G RG G+P PP GP G G
Sbjct: 297 PMGPRGAPGERGRPGLPGAAGA-RGNDGARGSDGQPGPP----GPPGTAG 341
Score = 32.3 bits (72), Expect = 0.65
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 241 AGTNLRRGAPAGP--RASPGKAAG----AQRCEAGTRGCGGRPAPPRLRTGPRGGCG 89
AG R G P GP R PG G + G++G GRP PP +GPRG G
Sbjct: 520 AGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPG-PSGPRGQPG 575
Score = 30.0 bits (66), Expect = 3.2
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 214 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 77
P GPR + G +R G+ G G+P PP P CGG AA
Sbjct: 1161 PPGPRGNRG-----ERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAA 1201
>gi|34328045|ref|NP_031761.1| procollagen, type IV, alpha 4 [Mus
musculus]
Length = 1682
Score = 33.1 bits (74), Expect = 0.38
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 223 RGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAP--PRLRTGPRGGCGGI 83
R P GP +PG+AA + G G G P P PR GP G G +
Sbjct: 1228 RPGPPGPAGAPGRAAKGDIPDPGPPGDRGPPGPDGPRGVPGPPGSPGNV 1276
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -3
Query: 208 GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 89
G R PG + G RG G P PP RTGP G G
Sbjct: 585 GERGDPGPRGDHKDAAPGERGLPGLPGPPG-RTGPEGPPG 623
Score = 28.5 bits (62), Expect = 9.3
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = -3
Query: 280 RPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 101
R L G GE G + RRG P SPG ++ + G GC G P PP GP
Sbjct: 1391 RRGLPGPGCKGE-PGPDGRRGQDGIP-GSPGPPG--RKGDTGEAGCPGAPGPP----GPT 1442
Query: 100 GGCG 89
G G
Sbjct: 1443 GDPG 1446
>gi|6680972|ref|NP_031764.1| procollagen, type VII, alpha 1 [Mus
musculus]
Length = 2944
Score = 32.7 bits (73), Expect = 0.50
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Frame = -3
Query: 214 PAGPRASPGKAAGAQRCEAGTRGCGGRPAP---PRLR-----TGPRGGCG 89
P GP PG+ CE G G G+P P P LR TGP+G G
Sbjct: 1432 PQGPAGRPGEKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRG 1481
Score = 29.6 bits (65), Expect = 4.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 208 GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGG 86
G + +PG AGA E G +G G P PR G G GG
Sbjct: 2301 GEKGAPGDLAGALLGEPGAKGDRGLPG-PRGEKGEAGRAGG 2340
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 103
effective length of database: 9,824,741
effective search space used: 3173391343
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)