Search to RefSeq (Human) database
Query= 20050322C-007257 (20050322C-007257) 20050322C-007257
(993 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8923911|ref|NP_061167.1| LanC lantibiotic synthetase componen... 315 2e-86
Alignment gi|5174445|ref|NP_006046.1| lanthionine synthetase C-like protei... 244 7e-65
Alignment gi|38348330|ref|NP_940913.1| LanC lantibiotic synthetase compone... 108 5e-24
Alignment gi|37620171|ref|NP_110394.2| AT-hook transcription factor [Homo ... 33 0.32
Alignment gi|51470859|ref|XP_373497.3| PREDICTED: hypothetical protein XP_... 32 0.54
Alignment gi|41147112|ref|XP_371731.1| PREDICTED: similar to bA110H4.2 (si... 31 1.6
Alignment gi|33457326|ref|NP_663632.1| homeobox protein Gsh-1 [Homo sapiens] 31 1.6
Alignment gi|19924097|ref|NP_598006.1| synapsin I isoform Ib [Homo sapiens] 30 2.1
Alignment gi|51465494|ref|XP_499228.1| PREDICTED: hypothetical protein XP_... 30 2.1
Alignment gi|11141903|ref|NP_068598.1| hypothetical protein FLJ13149 [Homo... 30 3.5
>gi|8923911|ref|NP_061167.1| LanC lantibiotic synthetase component
C-like 2 [Homo sapiens]
Length = 450
Score = 315 bits (808), Expect = 2e-86
Identities = 143/155 (92%), Positives = 152/155 (98%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGAIHFLSD+L PET+RFPAFEL SS+RD
Sbjct: 416 SLFEGMAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>gi|5174445|ref|NP_006046.1| lanthionine synthetase C-like protein 1
[Homo sapiens]
Length = 399
Score = 244 bits (623), Expect = 7e-65
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>gi|38348330|ref|NP_940913.1| LanC lantibiotic synthetase component
C-like 3 [Homo sapiens]
Length = 388
Score = 108 bits (271), Expect = 5e-24
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 295
KG GICHG AG+ Y FL LYRLT + KY+YRA
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
>gi|37620171|ref|NP_110394.2| AT-hook transcription factor [Homo
sapiens]
Length = 1439
Score = 33.1 bits (74), Expect = 0.32
Identities = 27/100 (27%), Positives = 37/100 (37%)
Frame = -1
Query: 804 APRFIGYGEGAAVCPHARPARAHGQRRASAENNLRLRRANTEGHANITQHWTRRRHADTS 625
+P+ + G G CPH RP R A + L A+T + AD
Sbjct: 1228 SPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLGPPPADTL-QCPLCGQVGSPPEADGP 1286
Query: 624 EGSTAGWRGGGLRGSAPSVLPSSGCTVASVSGARQPGGLW 505
+T+G R APS + + S R P GLW
Sbjct: 1287 GSATSGAEKATTRRKAPSTPSPKQRSKQAGSSPRPPPGLW 1326
>gi|51470859|ref|XP_373497.3| PREDICTED: hypothetical protein
XP_373497 [Homo sapiens]
Length = 599
Score = 32.3 bits (72), Expect = 0.54
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 402 PTSWPPRQHGFQHLNSALQRGIQRCKKTPKGPDGTTGRQVAWRLTQKPPCILRKGGRREQ 581
P +WPPR Q A + ++ +P PDG+ +PP + R G +
Sbjct: 202 PRAWPPRGRRRQQRRRAPRSAAEQRPPSPVPPDGSA----------RPPALPRSAGPGPR 251
Query: 582 SPADPR 599
P PR
Sbjct: 252 GPPPPR 257
>gi|41147112|ref|XP_371731.1| PREDICTED: similar to bA110H4.2
(similar to membrane protein) [Homo sapiens]
Length = 1165
Score = 30.8 bits (68), Expect = 1.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 750 PARAHGQRRASAENNLRLRRANTEGHANITQHWTRRRHADTSEGSTAGWRGGGLRGSA 577
PA +H Q S+ N + + +G ++ TR ADT+ G T RGG R A
Sbjct: 682 PASSHCQLALSSSNTV-----SEDGPQAVSSRHTRCEKADTAPGQTLAPRGGSPRSQA 734
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 750 PARAHGQRRASAENNLRLRRANTEGHANITQHWTRRRHADTSEGSTAGWRGGGLRGSA 577
PA +H Q S+ N + + +G ++ TR ADT+ G T RGG R A
Sbjct: 954 PASSHCQLALSSSNTV-----SEDGPQAVSSRDTRCEKADTAPGQTLAPRGGSPRSQA 1006
>gi|33457326|ref|NP_663632.1| homeobox protein Gsh-1 [Homo sapiens]
Length = 264
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = -1
Query: 702 RLRRANTEGHANITQHWTR-----RRHADTSEGSTAGWRGGGLRGSAPSVLPSSGCTVAS 538
RLRR + N+++ + RR EG + RGGG G+ GC AS
Sbjct: 174 RLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCAS 233
Query: 537 VSGAR 523
+S A+
Sbjct: 234 LSSAK 238
>gi|19924097|ref|NP_598006.1| synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Frame = +3
Query: 348 PTGPTL-SSKAWPAPFTSSPTSWPPRQHGFQHLNSALQRGIQRCKKTPKGPDGTTGRQVA 524
P GPT +S+A P P T PT+ PR G GP G Q+A
Sbjct: 597 PAGPTRQASQAGPVPRTGPPTTQQPRPSG-------------------PGPAGRPKPQLA 637
Query: 525 WRLTQ--KPPCILRKGG----RREQSPADPRP 602
+ +Q PP GG + + SPA +P
Sbjct: 638 QKPSQDVPPPATAAAGGPPHPQLKASPAQAQP 669
>gi|51465494|ref|XP_499228.1| PREDICTED: hypothetical protein
XP_499228 [Homo sapiens]
Length = 1358
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Frame = +3
Query: 351 TGPTLSSKAWPAPFTSSPTSWPPRQHGFQHLNSALQRGIQRCKKTPKGPDGTTGRQVAWR 530
TGP WP TS+P WP C T + P TT Q+ +
Sbjct: 971 TGPR-ERGLWPPQMTSAPCLWP------------------LCLSTARSPGHTTTLQMIFE 1011
Query: 531 LTQ------KPPCILRKGGRREQSPADPRPASLLCSP 623
Q P C + R P P PA L +P
Sbjct: 1012 YNQTFKAAVSPSC--SRPQHRPSPPLQPPPAPALTAP 1046
>gi|11141903|ref|NP_068598.1| hypothetical protein FLJ13149 [Homo
sapiens]
Length = 764
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 827 VSCLPIQKHPALLG-TEKGLLCALMHGQLGLMDREGL 720
+S LP ++HP LLG T LLC L ++ L D + L
Sbjct: 170 LSSLPAEQHPVLLGSTSFALLCQLSVKKIQLFDTQDL 206
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 102
effective length of database: 11,701,773
effective search space used: 2668004244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-007257 (20050322C-007257) 20050322C-007257
(993 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19526936|ref|NP_598498.1| LanC (bacterial lantibiotic synthet... 310 7e-85
Alignment gi|21489937|ref|NP_067270.1| LanC (bacterial lantibiotic synthet... 238 4e-63
Alignment gi|27734148|ref|NP_775590.1| RIKEN cDNA 6030463G20 [Mus musculus] 142 2e-34
Alignment gi|30424661|ref|NP_775604.1| subcommissural organ spondin [Mus m... 33 0.27
Alignment gi|7305319|ref|NP_038808.1| neuronal PAS domain protein 3 [Mus m... 32 0.79
Alignment gi|51762001|ref|XP_489206.1| hypothetical protein XP_489206 [Mus... 31 1.0
Alignment gi|33859803|ref|NP_796294.1| phosphoinositide-3-kinase, regulato... 31 1.3
Alignment gi|51829739|ref|XP_488746.1| hypothetical protein XP_488746 [Mus... 31 1.3
Alignment gi|6753232|ref|NP_033913.1| calcium channel, voltage-dependent, ... 30 2.3
Alignment gi|51828975|ref|XP_484129.1| similar to mKIAA0230 protein [Mus m... 30 3.0
>gi|19526936|ref|NP_598498.1| LanC (bacterial lantibiotic synthetase
component C)-like 2 [Mus musculus]
Length = 450
Score = 310 bits (795), Expect = 7e-85
Identities = 139/155 (89%), Positives = 151/155 (97%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGA+HFLSDIL PETARFPAFELG ++D
Sbjct: 416 SLFEGMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>gi|21489937|ref|NP_067270.1| LanC (bacterial lantibiotic synthetase
component C)-like 1 [Mus musculus]
Length = 399
Score = 238 bits (607), Expect = 4e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>gi|27734148|ref|NP_775590.1| RIKEN cDNA 6030463G20 [Mus musculus]
Length = 420
Score = 142 bits (359), Expect = 2e-34
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
>gi|30424661|ref|NP_775604.1| subcommissural organ spondin [Mus
musculus]
Length = 4998
Score = 33.1 bits (74), Expect = 0.27
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Frame = -2
Query: 512 ACGPVGSLRSLFAPLDPSLKSRVQMLETVLSRGPGCRRGSEWRRPCLRRESRACREC--G 339
A P G S A L S +SRV + G C G + RPC R S C +C G
Sbjct: 3310 AWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGKPCLGGYQQSRPC-RNSSTLCTDCGGG 3368
Query: 338 NHVLRTPDTTLQTCK-LGRGTSCPAXXXXXXXXXXRCPQSRGRCRSPCAAGP 186
+L +C+ L G++C P S G C+S C P
Sbjct: 3369 QDLLPCGQPCRHSCQDLSLGSTCQ-------------PGSAG-CQSGCGCPP 3406
>gi|7305319|ref|NP_038808.1| neuronal PAS domain protein 3 [Mus
musculus]
Length = 925
Score = 31.6 bits (70), Expect = 0.79
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Frame = +3
Query: 306 QSGVWSTEHMVAAFPTGPTLSSKAWPAPFTSSPTSW----PPRQHGFQHLNSALQRGIQR 473
+S +W+ +P +S P T PTS P Q G AL I
Sbjct: 665 ESSIWN-------YPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSIGGGGALHVAIPD 717
Query: 474 CKKTPKGPDGTTGRQVAWRLTQKPPCILRKGGRREQSPADPRPASLLCSPR 626
TP G DGT GR+ + T P+DP L SPR
Sbjct: 718 SVLTPPGADGTAGRKTQFSGT-------------APVPSDPLSPPLSASPR 755
>gi|51762001|ref|XP_489206.1| hypothetical protein XP_489206 [Mus
musculus]
Length = 396
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 539 LCQAPGNLAACGPVGSLRSLFAPLDPSLKSRVQMLETVLSRGPG-CRRGSEWRRPCLRRE 363
LC+ GPV R L AP P R +ET + GPG G RR C RR+
Sbjct: 17 LCKRQRRARDPGPVD--RPLRAPPPPDAALRAVTMETAAAPGPGWAAEGERRRRRCSRRD 74
>gi|33859803|ref|NP_796294.1| phosphoinositide-3-kinase, regulatory
subunit 5, p101 [Mus musculus]
Length = 871
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Frame = +3
Query: 552 ILRKGGRREQSPADP----RPASLLCSPRWC--------QRDVSVSSAA*CLHVPRCLLS 695
+LR+ R +S DP R A LCSP C QR S+ A +PR LL+
Sbjct: 428 VLRRDSRSLESSVDPTLPLRRAGSLCSPLDCPAQLPSRAQRSRSLPQAKLTTQLPRWLLA 487
Query: 696 VGVGCSQRKPF 728
+R+PF
Sbjct: 488 PPSHHQRRRPF 498
>gi|51829739|ref|XP_488746.1| hypothetical protein XP_488746 [Mus
musculus]
Length = 905
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -1
Query: 615 TAGWRGGGLRGSAPSVLPSSGCTVASVSGARQPGGLWSRRVP 490
+AG +GGG+R A S PS GC + G R G ++R VP
Sbjct: 650 SAGEKGGGVRMGAASGTPSPGCNGSERRGVR-GGVAFARPVP 690
>gi|6753232|ref|NP_033913.1| calcium channel, voltage-dependent, T
type, alpha 1G subunit [Mus musculus]
Length = 2295
Score = 30.0 bits (66), Expect = 2.3
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +3
Query: 381 PAPFTSSPTSWPPR----QHGFQHLNSALQRGIQRCK-KTPKGPDGTTGRQVAWRL---- 533
P P T +P+ PPR H F H + L+ RC+ P+ P +GR V
Sbjct: 535 PPPSTPTPSGGPPRGAESVHSFYHADCHLEP--VRCQAPPPRSPSEASGRTVGSGKVYPT 592
Query: 534 --TQKPPCILRKGGRREQSPADPRPASL 611
T PP +L+ E +P+ P P +L
Sbjct: 593 VHTSPPPEMLKDKALVEVAPS-PGPPTL 619
>gi|51828975|ref|XP_484129.1| similar to mKIAA0230 protein [Mus
musculus]
Length = 858
Score = 29.6 bits (65), Expect = 3.0
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 817 RQDTGRWCLSYVPE--RLSFKM---PSQCETFPSISCGTLLGELERKTAPEMKRNSGGRG 981
R+ RW L+ P RL M PS+ ET+PS C + PE+ +SG R
Sbjct: 504 REKLQRWVLATPPPGGRLCSAMESIPSRPETYPSAFCYPFTDGRAKSRHPEVTLSSGARA 563
Query: 982 A 984
A
Sbjct: 564 A 564
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 101
effective length of database: 9,877,343
effective search space used: 2261911547
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)