Search to RefSeq (Human) database
Query= 20050322C-007623 (20050322C-007623) 20050322C-007623
(911 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20149600|ref|NP_036360.2| methionine sulfoxide reductase B2 [... 294 7e-80
Alignment gi|37620216|ref|NP_932346.1| methionine sulfoxide reductase B3 [... 144 7e-35
Alignment gi|7706511|ref|NP_057416.1| selenoprotein X, 1 [Homo sapiens] 52 8e-07
Alignment gi|51474865|ref|XP_497626.1| PREDICTED: similar to Methionine-R-... 33 0.28
Alignment gi|13435397|ref|NP_077084.1| PHD finger protein 1 isoform b [Hom... 30 1.8
Alignment gi|4505777|ref|NP_002627.1| PHD finger protein 1 isoform a [Homo... 30 1.8
Alignment gi|42661349|ref|XP_378738.1| PREDICTED: hypothetical protein XP_... 30 3.1
Alignment gi|23510283|ref|NP_060561.3| elongation protein 3 homolog [Homo ... 29 4.1
Alignment gi|13376247|ref|NP_079112.1| hypothetical protein FLJ22301 [Homo... 29 5.3
Alignment gi|4507961|ref|NP_003398.1| zinc finger protein 36, C3H type, ho... 29 5.3
>gi|20149600|ref|NP_036360.2| methionine sulfoxide reductase B2
[Homo sapiens]
Length = 201
Score = 294 bits (752), Expect = 7e-80
Identities = 142/173 (82%), Positives = 148/173 (85%)
Frame = +3
Query: 36 GLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTPEQFHVTREK 215
GL RAV G+A GG G+AGSL E L+KSEWQKKLTPEQF+VTREK
Sbjct: 29 GLTLGTAPRRAVRGQAGGGGPGTAGIVGEAGSLATCELPLAKSEWQKKLTPEQFYVTREK 88
Query: 216 GTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGI 395
GTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDES TGI
Sbjct: 89 GTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGI 148
Query: 396 LRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPRKH 554
LRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPRKH
Sbjct: 149 LRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 201
>gi|37620216|ref|NP_932346.1| methionine sulfoxide reductase B3
[Homo sapiens]
Length = 192
Score = 144 bits (364), Expect = 7e-35
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +3
Query: 96 LSPKVGTGDAGSLTKREP---FLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAG 266
L+ +G+ +GS ++ S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G
Sbjct: 23 LAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG 82
Query: 267 MYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVC 446
+Y CV C +PLF SE K+ SG+GWPSF + + +D D S G R E C
Sbjct: 83 IYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSC 135
Query: 447 KQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 545
QC AHLGH+F DGP PTG+R+CINS AL F P
Sbjct: 136 SQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
>gi|7706511|ref|NP_057416.1| selenoprotein X, 1 [Homo sapiens]
Length = 116
Score = 51.6 bits (122), Expect = 8e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 548
A +V C +C LGH F DGP P RF +S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSS-SLKFVPK 106
>gi|51474865|ref|XP_497626.1| PREDICTED: similar to
Methionine-R-sulfoxide reductase (Selenoprotein X 1)
(HSPC270) [Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.28
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 353
+ N+ E G+Y C C LF S KY WP F++
Sbjct: 9 FQNHFEPGVYMCAKCGYELFPSRSKYTYSFPWPVFTK 45
>gi|13435397|ref|NP_077084.1| PHD finger protein 1 isoform b [Homo
sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 160 LERNGSRFVRDPASPVPTFGLRPPL 86
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|4505777|ref|NP_002627.1| PHD finger protein 1 isoform a [Homo
sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 160 LERNGSRFVRDPASPVPTFGLRPPL 86
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|42661349|ref|XP_378738.1| PREDICTED: hypothetical protein
XP_378738 [Homo sapiens]
Length = 113
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 217 PFSLVTWNCSGVSFFCHSLLERNGSRFVRDPASPVPTFGLRPPLSARPHTARESTS 50
P S + +G SLL++ GS V + S +P L P S PH+A +STS
Sbjct: 48 PPSCIPTGPAGGGQLLGSLLKQTGSHSVAEAGSQLPAT-LNSPSSNSPHSAFQSTS 102
>gi|23510283|ref|NP_060561.3| elongation protein 3 homolog [Homo
sapiens]
Length = 547
Score = 29.3 bits (64), Expect = 4.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Frame = -3
Query: 420 PARCPHVS--GSLC------------HSHQSQMCREPQKMKAIQCQSSTFSQS 304
P RCPH+S G++C +S QS EP M+AI+ + F Q+
Sbjct: 96 PHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQT 148
>gi|13376247|ref|NP_079112.1| hypothetical protein FLJ22301 [Homo
sapiens]
Length = 452
Score = 28.9 bits (63), Expect = 5.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 465 GELRTACRQPPCELFPARCPHVSGSLCHSHQSQMCREPQKMKAIQCQSSTFSQS 304
G R CR PC R PH+ L H + + P++ + + TF QS
Sbjct: 90 GAHRQRCRTCPCRTCGRRFPHLPALLLHRRRQHL---PERPRRCPLCARTFRQS 140
>gi|4507961|ref|NP_003398.1| zinc finger protein 36, C3H type,
homolog [Homo sapiens]
Length = 326
Score = 28.9 bits (63), Expect = 5.3
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = -3
Query: 483 QETHGQGELRTACRQPP-----CELF--PARCPHVSGSLCH 382
Q HG GELR A R P C F RCP+ GS CH
Sbjct: 125 QFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY--GSRCH 163
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 101
effective length of database: 11,730,591
effective search space used: 2369579382
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-007623 (20050322C-007623) 20050322C-007623
(911 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|21313208|ref|NP_083895.1| pilin-like transcription factor [Mu... 273 8e-74
Alignment gi|28893017|ref|NP_796066.1| methionine-R-sulfoxide reductase B3... 141 5e-34
Alignment gi|7305479|ref|NP_038787.1| selenoprotein X 1 [Mus musculus] 45 6e-05
Alignment gi|22122409|ref|NP_666082.1| cDNA sequence BC016188 [Mus musculus] 33 0.24
Alignment gi|31982382|ref|NP_038891.3| Bcl2-associated athanogene 3 [Mus m... 32 0.70
Alignment gi|51921339|ref|NP_001004171.1| hypothetical gene supported by A... 32 0.70
Alignment gi|51772050|ref|XP_486679.1| similar to condensin subunit [Mus m... 32 0.70
Alignment gi|51772015|ref|XP_486677.1| similar to condensin subunit [Mus m... 32 0.70
Alignment gi|57222290|ref|NP_001009549.1| zinc finger protein 36-like 3 [M... 30 1.6
Alignment gi|53292637|ref|NP_082405.1| similar to exonuclease NEF-sp [Mus ... 30 1.6
>gi|21313208|ref|NP_083895.1| pilin-like transcription factor [Mus
musculus]
Length = 175
Score = 273 bits (699), Expect = 8e-74
Identities = 134/181 (74%), Positives = 145/181 (80%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQF+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 549 K 551
K
Sbjct: 174 K 174
>gi|28893017|ref|NP_796066.1| methionine-R-sulfoxide reductase B3
[Mus musculus]
Length = 186
Score = 141 bits (356), Expect = 5e-34
Identities = 65/130 (50%), Positives = 86/130 (66%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFTP 161
>gi|7305479|ref|NP_038787.1| selenoprotein X 1 [Mus musculus]
Length = 116
Score = 45.1 bits (105), Expect = 6e-05
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 548
+V C +C LGH F DGP RF +S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSS-SLKFVPK 106
>gi|22122409|ref|NP_666082.1| cDNA sequence BC016188 [Mus musculus]
Length = 595
Score = 33.1 bits (74), Expect = 0.24
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 288 DSPLFSSEKKYCSGTGWPSFSEAHGTSG--SDESDTGILRRVDTSLGTARTEVVCKQ--C 455
DSP F + K C G F A T G + G L + D LGTA+ ++ + C
Sbjct: 351 DSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLGTLETAC 410
Query: 456 EAHLGHVFPDGPGPTGQR 509
E H DG PTG R
Sbjct: 411 EVHEILEVLDGRRPTGGR 428
>gi|31982382|ref|NP_038891.3| Bcl2-associated athanogene 3 [Mus
musculus]
Length = 577
Score = 31.6 bits (70), Expect = 0.70
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 67 QCGVVPTMAASARRSEPETQGPLQSVSRSSPRVSGKRS*LQSNSTSREKKGQNRLSVG 240
QCG +P A +A P GP +S S ++ S S S+ R G ++L G
Sbjct: 153 QCGQMPATATTAAAQPPTAHGPERSQSPAASDCSSSSSSASLPSSGRSSLGSHQLPRG 210
>gi|51921339|ref|NP_001004171.1| hypothetical gene supported by
AK082832 [Mus musculus]
Length = 174
Score = 31.6 bits (70), Expect = 0.70
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -3
Query: 447 CRQPPCELFP-ARCPHVSGSLCHSHQSQMCREPQKMKAIQCQ-SSTFSQS*RVGCHS 283
C PPC P + CPH LC CR P C S T +S +GC S
Sbjct: 82 CSCPPCPACPPSMCPHTYCVLCSGPSMTYCR-PSPCPIYSCHGSQTACRSSHLGCSS 137
>gi|51772050|ref|XP_486679.1| similar to condensin subunit [Mus
musculus]
Length = 421
Score = 31.6 bits (70), Expect = 0.70
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTE--PPFSGTYLNNKEAGMYHCVC 284
S S W KK P VTR+K TE PP +L N+E G C
Sbjct: 214 SASAWNKKKLPAATQVTRKKWTEAMPPKLRLHLLNEELGELSLKC 258
>gi|51772015|ref|XP_486677.1| similar to condensin subunit [Mus
musculus]
Length = 421
Score = 31.6 bits (70), Expect = 0.70
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTE--PPFSGTYLNNKEAGMYHCVC 284
S S W KK P VTR+K TE PP +L N+E G C
Sbjct: 214 SASAWNKKKLPAATQVTRKKWTEAMPPKLRLHLLNEELGELSLKC 258
>gi|57222290|ref|NP_001009549.1| zinc finger protein 36-like 3 [Mus
musculus]
Length = 725
Score = 30.4 bits (67), Expect = 1.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = -3
Query: 483 QETHGQGELRTACRQP-----PCELFPA--RCPHVSGSLCHSHQSQMCREPQKMKAIQCQ 325
Q HG ELRT R P PC F + CP+ G+ CH +Q ++P ++ +
Sbjct: 144 QFAHGYRELRTLSRHPKYKTEPCRTFHSVGFCPY--GTRCHFIHNQPEQQPVLSESTLEE 201
Query: 324 SSTFSQS 304
S+F+ S
Sbjct: 202 PSSFNGS 208
>gi|53292637|ref|NP_082405.1| similar to exonuclease NEF-sp [Mus
musculus]
Length = 445
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 294 PLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLG 422
PLF+ E K T W S + S + + G L++V +SLG
Sbjct: 279 PLFAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKVFSSLG 321
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 100
effective length of database: 9,903,644
effective search space used: 2010439732
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)