Search to RefSeq (Human) database
Query= 20050322C-007943 (20050322C-007943) 20050322C-007943
(978 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4506567|ref|NP_003790.1| RNA (guanine-7-) methyltransferase [... 295 e-127
Alignment gi|42656524|ref|XP_376148.1| PREDICTED: similar to RIKEN cDNA 58... 41 0.001
Alignment gi|8923398|ref|NP_060286.1| hypothetical protein FLJ20425 [Homo ... 40 0.003
Alignment gi|51472813|ref|XP_375305.2| PREDICTED: similar to TSG118.1 [Hom... 39 0.004
Alignment gi|55769587|ref|NP_003694.1| gene near HD on 4p16.3 with homolog... 37 0.017
Alignment gi|55742815|ref|NP_056510.1| bromodomain and PHD finger containi... 36 0.037
Alignment gi|50962882|ref|NP_001002909.1| KIAA0553 protein [Homo sapiens] 36 0.037
Alignment gi|33620716|ref|NP_061173.1| retinoblastoma-binding protein 6 is... 36 0.048
Alignment gi|33620769|ref|NP_008841.2| retinoblastoma-binding protein 6 is... 36 0.048
Alignment gi|32140192|ref|NP_078997.2| zinc finger homeodomain 4 [Homo sap... 36 0.048
>gi|4506567|ref|NP_003790.1| RNA (guanine-7-) methyltransferase
[Homo sapiens]
Length = 476
Score = 295 bits (754), Expect(2) = e-127
Identities = 152/196 (77%), Positives = 168/196 (85%)
Frame = +1
Query: 58 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 237
M NSAKAEE EK+SL++AK S++SETESSF+I+ENTT+ GT LSEK C V +KRK
Sbjct: 1 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK 60
Query: 238 MEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 417
EFEDDLVKESSSCG+DTPSKKRKLD IVPEEK GD EG S+KR+ E++ KD+ ST
Sbjct: 61 -EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSST 119
Query: 418 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 597
GDGTQ KRKI LEDVPEK+KNLEEGHSS VAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 120 GDGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 179
Query: 598 KSVLIGEFLEKVRQKK 645
KSVLIGEFLEKVRQKK
Sbjct: 180 KSVLIGEFLEKVRQKK 195
Score = 177 bits (450), Expect(2) = e-127
Identities = 89/113 (78%), Positives = 94/113 (83%)
Frame = +3
Query: 639 EKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQRYEDMKNRCRDNEYI 818
+KKRDITV RI+KLVCTDIADVSVKQCQQRYEDMKNR RD+EYI
Sbjct: 194 KKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR-RDSEYI 252
Query: 819 FSAEFITADLSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQADIMLRNAC 977
FSAEFITAD SKELLIDKFRDP+MCFDICSCQFVCHYSFESYEQAD+MLRNAC
Sbjct: 253 FSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 305
>gi|42656524|ref|XP_376148.1| PREDICTED: similar to RIKEN cDNA
5830415L20 [Homo sapiens]
Length = 231
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Frame = +1
Query: 52 SKMENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKK 231
S E+S+K + +K KE K S + SS S D +++S + +K G KK
Sbjct: 82 SGSESSSKKRQRKK---KEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQ--GKWRKKKK 136
Query: 232 -RKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDE 408
R + + + E+ S +D+ KK+K G E+ +G+S+KR+M +++D+
Sbjct: 137 NRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKH----IKGLSKKRKM----YSEDK 188
Query: 409 PSTGDGTQKKRKIELEDVPEKRKN 480
P + + + IE E +K+K+
Sbjct: 189 PLSSESLSESEYIEEEKTKKKKKH 212
>gi|8923398|ref|NP_060286.1| hypothetical protein FLJ20425 [Homo
sapiens]
Length = 379
Score = 39.7 bits (91), Expect = 0.003
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 226 KKRKMEFEDDLVKESSSCGEDTPSKKRK------LDAG--IVPEEKGSGDDEGISRKRRM 381
KKRK E ++ ++ + KKRK L+AG VPE GS S+K++
Sbjct: 197 KKRKREKKELKLENHQENSRNQKPKKRKKGQEADLEAGGEEVPEANGSAGKR--SKKKKQ 254
Query: 382 ESDGFTKDEPSTGDGTQKKRKIELEDVPEKRK 477
D +++E G G +K+R E+E +K+K
Sbjct: 255 RKDSASEEEARVGAGKRKRRHSEVETDSKKKK 286
>gi|51472813|ref|XP_375305.2| PREDICTED: similar to TSG118.1 [Homo
sapiens]
Length = 458
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +1
Query: 106 EAKTSID-SETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMEFEDDLV---KESS 273
EA+ + D +T S DE + G + K+P KK+K+ E D + + S
Sbjct: 173 EAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPS 232
Query: 274 SCGEDTPSK--KRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTK----DEPSTGDGTQK 435
E +P K K+K PE DD S K++M+S + +EP+ +K
Sbjct: 233 RSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKK 292
Query: 436 KRK--------------IELEDVPEKRKNLEEGHSSAV--AAHYNEL-QEVGLEKRSQSR 564
KRK +LE V EK+ N++E H V A E+ +E G + S++R
Sbjct: 293 KRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETR 352
Query: 565 IFYLRNFNNW 594
+ F W
Sbjct: 353 KWTGTQFGQW 362
>gi|55769587|ref|NP_003694.1| gene near HD on 4p16.3 with homology
to hypothetical S. pombe gene [Homo sapiens]
Length = 857
Score = 37.4 bits (85), Expect = 0.017
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Frame = +1
Query: 22 LVHEVVP-SK*SKMENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKA 198
L+ E++ SK K E A+ E+ +L+ K +D++ T LS K
Sbjct: 192 LIEELIAKSKQEKRERQAQREDALELTEK---------------LDQDWKEIQTLLSHKT 236
Query: 199 PTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEK------------- 339
P +K K + D +V+E + PS + K +A + EE+
Sbjct: 237 PKSENRDKKEKPKPDAYDMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRR 296
Query: 340 --GSGDDEGISRKRRME----SDGFTKDEPSTGDGTQKKRKIEL-EDVPEKR-------- 474
G +DE + + + M +DGF D+ + K K+ + EDV E++
Sbjct: 297 MLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSYKDGKMNVEEDVQEEQSKEASDPE 356
Query: 475 KNLEEGHSS 501
N EEG SS
Sbjct: 357 SNEEEGDSS 365
>gi|55742815|ref|NP_056510.1| bromodomain and PHD finger containing,
3 [Homo sapiens]
Length = 1205
Score = 36.2 bits (82), Expect = 0.037
Identities = 27/101 (26%), Positives = 44/101 (43%)
Frame = +1
Query: 76 AEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMEFEDD 255
+E ++ LKE D E E ++E ++ + L G PKK KM +
Sbjct: 405 SETGDEEGLKEG----DGEEEEEEEVEEEEQE-----AQGGVSGSLKGVPKKSKMSLKQK 455
Query: 256 LVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRR 378
+ KE G+DTPS L +P + + G+S +R+
Sbjct: 456 IKKEPEEAGQDTPSTLPMLAVPQIPSYRLNKICSGLSFQRK 496
>gi|50962882|ref|NP_001002909.1| KIAA0553 protein [Homo sapiens]
Length = 1502
Score = 36.2 bits (82), Expect = 0.037
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 31 EVVPSK*SKMENSAKAEECEKLSLKEAKTSIDSETESSF-SIDENTTSPGTRLSEKAPTC 207
++V S +M+ A C L+ +E S SETE + S+ G K
Sbjct: 621 KIVRSSGGRMDAPASGSACSGLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRHKKKKK 680
Query: 208 GLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKL------------DAGIVPEEKGSGD 351
+ KRK + + + + GE + +K++ + G PE GSG
Sbjct: 681 HKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGS 740
Query: 352 DEGISRKRRMESDGFTKDEPSTGDGTQKK 438
R+RR + D + P+ + KK
Sbjct: 741 PAPPRRRRRAQDDSQRRSLPAEEGSSGKK 769
>gi|33620716|ref|NP_061173.1| retinoblastoma-binding protein 6 isoform
2 [Homo sapiens]
Length = 1758
Score = 35.8 bits (81), Expect = 0.048
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 4/143 (2%)
Frame = +1
Query: 61 ENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKR-- 234
E S ++E K + +E + ++++ SS DE T + K+ P K
Sbjct: 1016 ERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEK 1075
Query: 235 -KMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSG-DDEGISRKRRMESDGFTKDE 408
K ++ D+ E + E+ K P EK D++G RKR+ E G KD
Sbjct: 1076 VKKDYSKDVKSEKLTTKEEKAKK---------PNEKNKPLDNKGEKRKRKTEEKGVDKDF 1126
Query: 409 PSTGDGTQKKRKIELEDVPEKRK 477
S+ K E+ KRK
Sbjct: 1127 ESSSMKISKLEVTEIVKPSPKRK 1149
>gi|33620769|ref|NP_008841.2| retinoblastoma-binding protein 6 isoform
1 [Homo sapiens]
Length = 1792
Score = 35.8 bits (81), Expect = 0.048
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 4/143 (2%)
Frame = +1
Query: 61 ENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKR-- 234
E S ++E K + +E + ++++ SS DE T + K+ P K
Sbjct: 1050 ERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEK 1109
Query: 235 -KMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSG-DDEGISRKRRMESDGFTKDE 408
K ++ D+ E + E+ K P EK D++G RKR+ E G KD
Sbjct: 1110 VKKDYSKDVKSEKLTTKEEKAKK---------PNEKNKPLDNKGEKRKRKTEEKGVDKDF 1160
Query: 409 PSTGDGTQKKRKIELEDVPEKRK 477
S+ K E+ KRK
Sbjct: 1161 ESSSMKISKLEVTEIVKPSPKRK 1183
>gi|32140192|ref|NP_078997.2| zinc finger homeodomain 4 [Homo sapiens]
Length = 3567
Score = 35.8 bits (81), Expect = 0.048
Identities = 25/98 (25%), Positives = 36/98 (36%)
Frame = +1
Query: 274 SCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDGTQKKRKIEL 453
+C +D + + + I P D++ S + E KD S GTQ +
Sbjct: 1091 TCDDDLTEQHEEAEGAIKPTAVAEDDEKDTSERDNSEGKNSNKDSVSVAGGTQPLLLAKE 1150
Query: 454 EDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRI 567
EDV KR E + Y + R QSRI
Sbjct: 1151 EDVATKRSKPTEDNKFCHEQFY-QCPYCNYNSRDQSRI 1187
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 102
effective length of database: 11,701,773
effective search space used: 2609495379
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-007943 (20050322C-007943) 20050322C-007943
(978 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|13385938|ref|NP_080716.1| RNA (guanine-7-) methyltransferase ... 196 2e-89
Alignment gi|51706340|ref|XP_283757.3| similar to KIAA0252 protein [Mus mu... 40 0.002
Alignment gi|27370102|ref|NP_766334.1| hypothetical protein B130036O03 [Mu... 40 0.002
Alignment gi|23956062|ref|NP_035377.1| retinoblastoma binding protein 6 [M... 38 0.011
Alignment gi|22129770|ref|NP_666117.1| ankyrin 3, epithelial isoform b [Mu... 37 0.018
Alignment gi|22129789|ref|NP_033800.2| ankyrin 3, epithelial isoform g [Mu... 37 0.018
Alignment gi|25121946|ref|NP_733789.1| ankyrin 3, epithelial isoform c [Mu... 37 0.018
Alignment gi|25121944|ref|NP_733788.1| ankyrin 3, epithelial isoform f [Mu... 37 0.018
Alignment gi|25121950|ref|NP_733791.1| ankyrin 3, epithelial isoform e [Mu... 37 0.018
Alignment gi|25121948|ref|NP_733790.1| ankyrin 3, epithelial isoform d [Mu... 37 0.018
>gi|13385938|ref|NP_080716.1| RNA (guanine-7-) methyltransferase
[Mus musculus]
Length = 465
Score = 196 bits (497), Expect(2) = 2e-89
Identities = 105/181 (58%), Positives = 132/181 (72%), Gaps = 2/181 (1%)
Frame = +1
Query: 109 AKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGED 288
AK S+ S+ ES +E + G RL E P C V PK +K EF +DLV+++SS +D
Sbjct: 5 AKASVASDPESPPGGNEPAAASGQRLPENTPPCQQVDQPKMQK-EFGEDLVEQNSSYVQD 63
Query: 289 TPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDGTQKKRKIELED--V 462
+PSKKRKLD I+ EEK S DD G +++ ++E ++DEPS G Q KRK++ +D V
Sbjct: 64 SPSKKRKLDVEIILEEKHSEDDGGSAKRSKLERGDVSEDEPSLGRLNQTKRKLQPQDDEV 123
Query: 463 PEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQK 642
P+K + LEEGHSSAVAAHYNELQEVGL KRSQSRIFYLRNFNNW+KS+LIGE LEKVRQ+
Sbjct: 124 PQKLQKLEEGHSSAVAAHYNELQEVGLAKRSQSRIFYLRNFNNWIKSILIGEILEKVRQR 183
Query: 643 K 645
K
Sbjct: 184 K 184
Score = 152 bits (384), Expect(2) = 2e-89
Identities = 76/112 (67%), Positives = 84/112 (75%)
Frame = +3
Query: 642 KKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQRYEDMKNRCRDNEYIF 821
K RDITV RI +LVC DIAD+S+KQCQQRYEDM+ R RDNE+IF
Sbjct: 184 KTRDITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCR-RDNEHIF 242
Query: 822 SAEFITADLSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQADIMLRNAC 977
SAEFITAD SKELL++KFRDPEM FD+CSCQF CHYSFES QAD MLRNAC
Sbjct: 243 SAEFITADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNAC 294
>gi|51706340|ref|XP_283757.3| similar to KIAA0252 protein [Mus
musculus]
Length = 779
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 21/168 (12%)
Frame = +1
Query: 79 EECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKK---RKMEFE 249
E E LSL + K S E E S ++ T S+ T G KK RK+E +
Sbjct: 90 ETTELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKTRKVEKK 149
Query: 250 DDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDG- 426
+ K+++ S + PEE D E S +SD ++DE DG
Sbjct: 150 GAMKKQANKAASSGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSEDE-EFHDGY 208
Query: 427 -----------------TQKKRKIELEDVPEKRKNLEEGHSSAVAAHY 519
T+K+R+ EL + EKR+ L+ V H+
Sbjct: 209 GEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRSQQKVVGIHF 256
>gi|27370102|ref|NP_766334.1| hypothetical protein B130036O03 [Mus
musculus]
Length = 601
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 1/167 (0%)
Frame = +1
Query: 61 ENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKK-RK 237
+N + C + +LK+A S D + ++ +E + G V ++ K
Sbjct: 115 KNRTTKKTCLRRALKKAVESTDEDHQTDLDAKMGLEESSEGEAEGSVRSGKVTEEEEDMK 174
Query: 238 MEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 417
E + + K++ + + P K D V EE GS ++E + ++ ++E ST
Sbjct: 175 QEQKGQVRKQAGAKDKQVPLKA---DRKQVREESGSSEEEAVLQRAKVEG--------ST 223
Query: 418 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQ 558
G Q++ + E+ P K+K L E S + A + +++S+
Sbjct: 224 GANCQEESEESGEESPAKKKELSEPRSRSNRAERTARERKSYKQKSR 270
>gi|23956062|ref|NP_035377.1| retinoblastoma binding protein 6 [Mus
musculus]
Length = 1560
Score = 37.7 bits (86), Expect = 0.011
Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Frame = +1
Query: 61 ENSAKAEECEKLSLKEAKTSIDSETESSFSI-DENTTSPGTRLSEKAPTCGLVGTPKKRK 237
E S ++E K + +EA T IDS SS S DE T + K+ P K
Sbjct: 821 EKSPRSEPPLKKAKEEA-TKIDSVKPSSSSQKDEKVTGTPRKAHSKSAKEHQEAKPAK-- 877
Query: 238 MEFEDDLVKESSSCGEDTPSKK--RKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEP 411
D+ VK+ C +D S+K K + PE+ D +G RKR+ E KD
Sbjct: 878 ----DEKVKKD--CSKDIKSEKPASKDEKAKKPEKNKLLDSKGEKRKRKTEEKSVDKDFE 931
Query: 412 STG------DGTQ-----KKRKIE-----LEDVPEKRK 477
S+ +GT+ KRK+E LE PEK K
Sbjct: 932 SSSMKISKVEGTEIVKPSPKRKMEGDVEKLERTPEKDK 969
Score = 33.1 bits (74), Expect = 0.27
Identities = 39/156 (25%), Positives = 62/156 (39%)
Frame = +1
Query: 73 KAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMEFED 252
KA++ EK L ++K S+D++ S ++S+ T +V KRKME +
Sbjct: 900 KAKKPEKNKLLDSKGEKRKRKTEEKSVDKDFESSSMKISKVEGT-EIVKPSPKRKMEGDV 958
Query: 253 DLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDGTQ 432
+ + E TP K K+ + P +K + E + E+ TK+ + T
Sbjct: 959 EKL-------ERTPEKD-KIASSTTPAKKIKLNRETGKKIGNAENASTTKEPSEKLESTS 1010
Query: 433 KKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVG 540
K K E KRK SS+ Y G
Sbjct: 1011 SKIKQEKVKGKAKRKVAGSEGSSSTLVDYTSTSSTG 1046
>gi|22129770|ref|NP_666117.1| ankyrin 3, epithelial isoform b [Mus
musculus]
Length = 1961
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 1868 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 1923
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 1924 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 1959
>gi|22129789|ref|NP_033800.2| ankyrin 3, epithelial isoform g [Mus
musculus]
Length = 898
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 805 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 860
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 861 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 896
>gi|25121946|ref|NP_733789.1| ankyrin 3, epithelial isoform c [Mus
musculus]
Length = 1765
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 1672 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 1727
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 1728 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 1763
>gi|25121944|ref|NP_733788.1| ankyrin 3, epithelial isoform f [Mus
musculus]
Length = 1094
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 1001 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 1056
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 1057 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 1092
>gi|25121950|ref|NP_733791.1| ankyrin 3, epithelial isoform e [Mus
musculus]
Length = 1940
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 1847 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 1902
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 1903 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 1938
>gi|25121948|ref|NP_733790.1| ankyrin 3, epithelial isoform d [Mus
musculus]
Length = 1943
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +1
Query: 184 LSEKAPTCGLVGTPKKRKMEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGI 363
L K CG P ++ L + S ED P K + G+ + + D G
Sbjct: 1850 LKPKTHGCGRTEEPVSPLTAYQKSLEETSKLVIEDAP--KPCVPVGMKKMTRTTAD--GK 1905
Query: 364 SRKRRMESDGFTKDEPSTGDGTQKKRKIELEDVPEK 471
+R E +G T+ EP G+G + K K E+ +V +K
Sbjct: 1906 ARLNLQEEEGSTRSEPKQGEGYKVKTKKEIRNVEKK 1941
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 100
effective length of database: 9,903,644
effective search space used: 2228319900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)