Search to RefSeq (Human) database
Query= 20050322C-008086 (20050322C-008086) 20050322C-008086
(1036 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|48976063|ref|NP_705839.2| cytochrome b, ascorbate dependent 3... 249 5e-67
Alignment gi|19923603|ref|NP_079119.2| cytochrome b reductase 1 [Homo sapi... 139 4e-33
Alignment gi|27597088|ref|NP_001906.2| cytochrome b-561 [Homo sapiens] 103 3e-22
Alignment gi|32698982|ref|NP_872386.1| cytochrome b-561 domain containing ... 45 9e-05
Alignment gi|15149479|ref|NP_149162.1| alpha 1 type II collagen isoform 2,... 38 0.011
Alignment gi|13435125|ref|NP_001835.2| alpha 1 type II collagen isoform 1 ... 38 0.011
Alignment gi|4502959|ref|NP_000384.1| alpha 2 type V collagen preproprotei... 37 0.018
Alignment gi|42733592|ref|NP_976223.1| hypothetical MGC50722 [Homo sapiens] 37 0.023
Alignment gi|4502951|ref|NP_000081.1| alpha 1 type III collagen [Homo sapi... 35 0.089
Alignment gi|13376304|ref|NP_079145.1| hypothetical protein FLJ14050 [Homo... 34 0.20
>gi|48976063|ref|NP_705839.2| cytochrome b, ascorbate dependent 3
[Homo sapiens]
Length = 242
Score = 249 bits (637), Expect(2) = 5e-67
Identities = 117/154 (75%), Positives = 125/154 (81%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
G TTVFLF QW LGF VFLLPWAS+ LRSLL P
Sbjct: 121 GTTTVFLFACQWFLGFAVFLLPWASMWLRSLLKP 154
Score = 23.9 bits (50), Expect(2) = 5e-67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKPIHVFFG
Sbjct: 152 LKPIHVFFG 160
>gi|19923603|ref|NP_079119.2| cytochrome b reductase 1 [Homo sapiens]
Length = 286
Score = 139 bits (349), Expect = 4e-33
Identities = 63/139 (45%), Positives = 89/139 (64%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
KL K HA ++ +A IL ++ + AVF HN I N+YSLHSW+G+ V + LQ + G
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQLLSG 138
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F VFLLPWA + LR+ L P
Sbjct: 139 FSVFLLPWAPLSLRAFLMP 157
>gi|27597088|ref|NP_001906.2| cytochrome b-561 [Homo sapiens]
Length = 251
Score = 103 bits (256), Expect = 3e-22
Identities = 54/139 (38%), Positives = 79/139 (56%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 140 FSFFLFPGASFSLRSRYRP 158
>gi|32698982|ref|NP_872386.1| cytochrome b-561 domain containing 1
[Homo sapiens]
Length = 229
Score = 45.1 bits (105), Expect = 9e-05
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = +3
Query: 654 GTILTFNWHPVLMVTGMVVLYSAASLAYRLPQS---WVGPKLPWKLGHAAMHLMAFILTV 824
GT L F+WHPV M + + A L + S + K +L H A +A +
Sbjct: 48 GTSL-FSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRL-HWAGQTLAILCAA 105
Query: 825 LGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
LGL + + ++P+L S HSW+G T+ +Q + G
Sbjct: 106 LGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCG 145
>gi|15149479|ref|NP_149162.1| alpha 1 type II collagen isoform 2,
preproprotein [Homo sapiens]
Length = 1418
Score = 38.1 bits (87), Expect = 0.011
Identities = 48/171 (28%), Positives = 60/171 (35%), Gaps = 2/171 (1%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
G++G + + + P PR GERGR PA AG+RG G P PA
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPGPVGPAG 294
Query: 819 SG*RPSGAWLRGPTSRAAWALPMTGAGGTPATQHCRAPPCQ--SP*APGAS*T*VWCHPR 646
P +G TGA G Q R P SP GAS +P
Sbjct: 295 GPGFPGAPGAKGEAG-------PTGARGPEGAQGPRGEPGTPGSPGPAGAS-----GNPG 342
Query: 645 QSLCASTASNRWWRGCTWSPGRTAPGPTGKTIPQPF*SGTRSFTPRGRLTE 493
+ G +PG PGP G PQ T P+G+ E
Sbjct: 343 TDGIPGAKGSAGAPGIAGAPG--FPGPRGPPGPQ---GATGPLGPKGQTGE 388
Score = 30.0 bits (66), Expect = 2.9
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
GLRG A P P AGERG + G G+ G PP P
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQ-----GAPGPSGFQGLPG------PPGPPG 606
Query: 819 SG*RPSGAWLRGPTSRAAWALP-----MTGAGGTPATQHCRAP 706
G +P + G P G G+P Q + P
Sbjct: 607 EGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP 649
>gi|13435125|ref|NP_001835.2| alpha 1 type II collagen isoform 1
[Homo sapiens]
Length = 1487
Score = 38.1 bits (87), Expect = 0.011
Identities = 48/171 (28%), Positives = 60/171 (35%), Gaps = 2/171 (1%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
G++G + + + P PR GERGR PA AG+RG G P PA
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 819 SG*RPSGAWLRGPTSRAAWALPMTGAGGTPATQHCRAPPCQ--SP*APGAS*T*VWCHPR 646
P +G TGA G Q R P SP GAS +P
Sbjct: 364 GPGFPGAPGAKGEAG-------PTGARGPEGAQGPRGEPGTPGSPGPAGAS-----GNPG 411
Query: 645 QSLCASTASNRWWRGCTWSPGRTAPGPTGKTIPQPF*SGTRSFTPRGRLTE 493
+ G +PG PGP G PQ T P+G+ E
Sbjct: 412 TDGIPGAKGSAGAPGIAGAPG--FPGPRGPPGPQ---GATGPLGPKGQTGE 457
Score = 30.0 bits (66), Expect = 2.9
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
GLRG A P P AGERG + G G+ G PP P
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQ-----GAPGPSGFQGLPG------PPGPPG 675
Query: 819 SG*RPSGAWLRGPTSRAAWALP-----MTGAGGTPATQHCRAP 706
G +P + G P G G+P Q + P
Sbjct: 676 EGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP 718
>gi|4502959|ref|NP_000384.1| alpha 2 type V collagen preproprotein
[Homo sapiens]
Length = 1496
Score = 37.4 bits (85), Expect = 0.018
Identities = 52/167 (31%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Frame = -2
Query: 1023 EGPKKTW--MGLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCE 850
EGPK G +G A P A P PR GERGR G +G RG
Sbjct: 308 EGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGR--------LGPQGAPGQRGAH 359
Query: 849 S*RRPPAPAQSG*RPSGAWLRGPTSRAAWALPMTGAGGTPATQHCRAP-----PCQSP*A 685
P P P + G A P TGA G Q R P SP
Sbjct: 360 GMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGP-TGARGPEGPQGQRGETGPPGPVGSPGL 418
Query: 684 PGAS*T*VWCHPRQSLCASTASNRWWRGCTWSPGRTAPGPTGKTIPQ 544
PGA T P+ + S G PG +PGP G T PQ
Sbjct: 419 PGAIGTDGTPGPKGPTGSPGTSGP--PGSAGPPG--SPGPQGSTGPQ 461
>gi|42733592|ref|NP_976223.1| hypothetical MGC50722 [Homo sapiens]
Length = 953
Score = 37.0 bits (84), Expect = 0.023
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Frame = -2
Query: 1017 PKKTWMGLRGCAAAQTPRAAERPQSPRPTAGERGRR-W*CPA--SCAGSRGWGSSRGCES 847
P++ W A R+ +RP+SP G +R W A +C+ R WG+ R S
Sbjct: 460 PQRAW------GAQGQDRSFQRPESPHERLGHFSQRPWSALAGQACSPQRAWGAQRQGPS 513
Query: 846 *RRPPAPAQS----G*RPSGAWLRGPTSRAAWALPMTGAGGTPATQH---CRAPPCQSP 691
+RP +P + +P A P R AW T P ++ +PP Q P
Sbjct: 514 SQRPGSPPEKRSPFPQQPWSAVATQPCPRRAWTACETWEDPGPRLRNPLERPSPPAQRP 572
>gi|4502951|ref|NP_000081.1| alpha 1 type III collagen [Homo
sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.089
Identities = 27/90 (30%), Positives = 34/90 (37%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
GL+G A P PR GERGR AG+RG +RG + PP P
Sbjct: 282 GLKGENGLPGENGAPGPMGPRGAPGERGRPG--LPGAAGARGNDGARGSDGQPGPPGPPG 339
Query: 819 SG*RPSGAWLRGPTSRAAWALPMTGAGGTP 730
+ P +G A G+ G P
Sbjct: 340 TAGFPGSPGAKGEVGPAG----SPGSNGAP 365
>gi|13376304|ref|NP_079145.1| hypothetical protein FLJ14050 [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/54 (40%), Positives = 25/54 (46%)
Frame = -2
Query: 1035 QRENEGPKKTWMGLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRG 874
QRE +GP L GC A + P E+P R T G RG C C GS G
Sbjct: 95 QRERQGPGSGAAPLSGCPAGRCP---EQPGLHRATCGFRGLG--CAPGCPGSGG 143
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 102
effective length of database: 11,701,773
effective search space used: 2831829066
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-008086 (20050322C-008086) 20050322C-008086
(1036 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|41235724|ref|NP_958739.1| cytochrome b, ascorbate dependent 3... 252 1e-67
Alignment gi|51706201|ref|XP_130253.3| cytochrome b reductase 1 [Mus muscu... 140 1e-33
Alignment gi|31542436|ref|NP_031831.2| cytochrome b-561 [Mus musculus] 106 2e-23
Alignment gi|51708360|ref|XP_485295.1| cytochrome b-561 domain containing ... 41 0.001
Alignment gi|13624305|ref|NP_112440.1| procollagen, type II, alpha 1 [Mus ... 39 0.004
Alignment gi|33859526|ref|NP_034060.1| procollagen, type III, alpha 1 [Mus... 35 0.058
Alignment gi|9790029|ref|NP_062694.1| tumor suppressor, region 10 [Mus mus... 34 0.17
Alignment gi|33147082|ref|NP_476512.1| HLA-B-associated transcript 3 [Mus ... 34 0.17
Alignment gi|42490762|ref|NP_937813.2| hypothetical protein 6430407N22 [Mu... 27 0.18
Alignment gi|16507202|ref|NP_082158.1| capicua homolog [Mus musculus] 33 0.22
>gi|41235724|ref|NP_958739.1| cytochrome b, ascorbate dependent 3
protein [Mus musculus]
Length = 242
Score = 252 bits (643), Expect(2) = 1e-67
Identities = 116/154 (75%), Positives = 126/154 (81%)
Frame = +3
Query: 540 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 719
MA GWFYLS + L SLGSMCIL T YWM+YW GFAWDGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 720 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 899
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL AVF FHNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 900 GITTVFLFRLQWVLGFVVFLLPWASVPLRSLLNP 1001
GITTV LF QW LGF VFLLPWAS LRSLL P
Sbjct: 121 GITTVVLFACQWFLGFAVFLLPWASQWLRSLLKP 154
Score = 23.1 bits (48), Expect(2) = 1e-67
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 992 LKPIHVFFG 1018
LKP+HVFFG
Sbjct: 152 LKPLHVFFG 160
>gi|51706201|ref|XP_130253.3| cytochrome b reductase 1 [Mus musculus]
Length = 437
Score = 140 bits (353), Expect = 1e-33
Identities = 61/139 (43%), Positives = 94/139 (67%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
+G + ++ + W+ ++ +G W+G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 166 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 225
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
KL K HA ++ +A IL ++ + AVF +HN +K+P++YSLHSW+G+T + L+ Q V+G
Sbjct: 226 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVG 285
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F VFLLPWA LR+++ P
Sbjct: 286 FFVFLLPWAPPSLRAIVMP 304
>gi|31542436|ref|NP_031831.2| cytochrome b-561 [Mus musculus]
Length = 250
Score = 106 bits (265), Expect = 2e-23
Identities = 57/139 (41%), Positives = 80/139 (57%)
Frame = +3
Query: 585 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 764
LG + T W+ + G AW+ + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 765 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFRLQWVLG 944
K K+ H +H+ AFI+ ++GL AVF++H + +LYSLHSW GI L+ +QW++G
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVG 138
Query: 945 FVVFLLPWASVPLRSLLNP 1001
F FL P AS LRS P
Sbjct: 139 FSFFLFPGASFSLRSRYRP 157
>gi|51708360|ref|XP_485295.1| cytochrome b-561 domain containing 1
[Mus musculus]
Length = 229
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +3
Query: 654 GTILTFNWHPVLMVTGMVVLYSAASLAYRLPQS---WVGPKLPWKLGHAAMHLMAFILTV 824
GT L F+WHPV M + + A L + S + K +L H A MA + V
Sbjct: 48 GTSL-FSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKTRIRL-HWAGQTMAILCAV 105
Query: 825 LGLAAVFNFHNHEKIPNLYSLHSWLGITTV 914
LGL + + ++ +L S HSW+G T+
Sbjct: 106 LGLGFIISSKIRSEMSHLVSWHSWIGALTL 135
>gi|13624305|ref|NP_112440.1| procollagen, type II, alpha 1 [Mus
musculus]
Length = 1442
Score = 39.3 bits (90), Expect = 0.004
Identities = 48/171 (28%), Positives = 60/171 (35%), Gaps = 2/171 (1%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
G++G + + + P PR GERGR PA AG+RG G P PA
Sbjct: 261 GVKGESGSPGENGSPGPMGPRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPGPVGPAG 318
Query: 819 SG*RPSGAWLRGPTSRAAWALPMTGAGGTPATQHCRAPPCQ--SP*APGAS*T*VWCHPR 646
P +G TGA G Q R P SP GAS +P
Sbjct: 319 GPGFPGAPGAKGEAG-------PTGARGPEGAQGSRGEPGNPGSPGPAGAS-----GNPG 366
Query: 645 QSLCASTASNRWWRGCTWSPGRTAPGPTGKTIPQPF*SGTRSFTPRGRLTE 493
+ G +PG PGP G PQ T P+G+ E
Sbjct: 367 TDGIPGAKGSAGAPGIAGAPG--FPGPRGPPGPQ---GATGPLGPKGQAGE 412
>gi|33859526|ref|NP_034060.1| procollagen, type III, alpha 1 [Mus
musculus]
Length = 1464
Score = 35.4 bits (80), Expect = 0.058
Identities = 27/90 (30%), Positives = 35/90 (38%)
Frame = -2
Query: 999 GLRGCAAAQTPRAAERPQSPRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
GL+G A P PR GERGR AG+RG +RG + PP P
Sbjct: 281 GLKGENGLPGDNGAPGPMGPRGAPGERGRPG--LPGAAGARGNDGARGSDGQPGPPGPPG 338
Query: 819 SG*RPSGAWLRGPTSRAAWALPMTGAGGTP 730
+ P +G A G+ G+P
Sbjct: 339 TAGFPGSPGAKGEVGPAG----SPGSNGSP 364
>gi|9790029|ref|NP_062694.1| tumor suppressor, region 10 [Mus
musculus]
Length = 222
Score = 33.9 bits (76), Expect = 0.17
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +3
Query: 669 FNWHPVLMVTGMVVLYSAASLAYRLPQSWVGPKLPWKLG---HAAMHLMAFILTVLGLAA 839
F+WHPVLM L + A L + P+S + L K+ H + L+A + +LGL
Sbjct: 45 FSWHPVLMSLAFSFLMTEALLMFS-PESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103
Query: 840 VFNFHNHEKIPNLYSLHSWLGITTVFLFRLQ 932
V +L + H G+ V LQ
Sbjct: 104 VILHKEQLGKAHLTTRHGQAGLLAVLWAGLQ 134
>gi|33147082|ref|NP_476512.1| HLA-B-associated transcript 3 [Mus
musculus]
Length = 1154
Score = 33.9 bits (76), Expect = 0.17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 243 RQLQELGDPRQIPPVEPRALPYLKTTTPEPQWDARRLASPRPAS 112
R ++ +GDP Q P EP + + T+PEPQ R ASP P +
Sbjct: 960 RYVRRVGDPPQTLPEEPMEVQGAERTSPEPQ---RENASPAPGT 1000
>gi|42490762|ref|NP_937813.2| hypothetical protein 6430407N22 [Mus
musculus]
Length = 903
Score = 26.9 bits (58), Expect(2) = 0.18
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 840 RPPAPAQSG*RPSGAWLRGPTSRAAWALPMTGAGGTP 730
RPP+PA+S R + G R +++ P A G+P
Sbjct: 406 RPPSPARSTSRLRAMAILGTEGRGSFSCPKAKAEGSP 442
Score = 25.4 bits (54), Expect(2) = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 942 PRPTAGERGRRW*CPASCAGSRGWGSSRGCES*RRPPAPAQ 820
P A G+R CP S +GSR +S CES PP A+
Sbjct: 337 PETCAPSEGQRRPCPESGSGSREVPTS--CESLDVPPPGAR 375
>gi|16507202|ref|NP_082158.1| capicua homolog [Mus musculus]
Length = 1606
Score = 33.5 bits (75), Expect = 0.22
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 177 STEGPLVPPEESAVGPRVPGAVFRIPESDQSTVRR 281
ST PL PP A GP P R P +D +T RR
Sbjct: 565 STAVPLRPPPPGAGGPATPSKATRFPPTDSATFRR 599
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 101
effective length of database: 9,877,343
effective search space used: 2400194349
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)