Search to RefSeq (Human) database
Query= 20050322C-008469 (20050322C-008469) 20050322C-008469
(843 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|13376611|ref|NP_079345.1| hypothetical protein FLJ14299 [Homo... 30 1.6
Alignment gi|51458351|ref|XP_052561.6| PREDICTED: KIAA1337 protein [Homo s... 30 1.6
Alignment gi|41152104|ref|NP_060257.3| chromosome 10 open reading frame 26... 29 3.7
Alignment gi|51466004|ref|XP_499249.1| PREDICTED: similar to MUC-B1 [Homo ... 28 6.2
Alignment gi|51465264|ref|XP_166300.4| PREDICTED: absent in melanoma 1 [Ho... 28 6.2
Alignment gi|51458639|ref|XP_497676.1| PREDICTED: hypothetical protein FLJ... 28 6.2
Alignment gi|21040326|ref|NP_620305.1| SON DNA-binding protein isoform F [... 28 8.1
Alignment gi|21040322|ref|NP_620304.1| SON DNA-binding protein isoform C [... 28 8.1
Alignment gi|16357503|ref|NP_378667.1| type IV alpha 6 collagen isoform B ... 28 8.1
Alignment gi|21040314|ref|NP_115571.1| SON DNA-binding protein isoform B [... 28 8.1
>gi|13376611|ref|NP_079345.1| hypothetical protein FLJ14299 [Homo
sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 153 CLSGLSSRSHLAFLLHVLCQAASSSSTLVKPSDRRLLQPCHFLYGAQAPSHPSCSLVPDH 332
CL G SHL C A + +K L+ P H L A S + + +P H
Sbjct: 381 CLGGYHGASHLGGSSCSTCSAHDPAGPSLKAGGYPLVYPGHPLQPAALSSSAAQAALPGH 440
Query: 333 PL 338
PL
Sbjct: 441 PL 442
>gi|51458351|ref|XP_052561.6| PREDICTED: KIAA1337 protein [Homo
sapiens]
Length = 1609
Score = 30.4 bits (67), Expect = 1.6
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 111 SVIVDSGF-LLPESGCLSGLSSRSHLAFLLHVLCQAASSSSTLVKPSDRRLLQPCHFLYG 287
SV+ DS F L E G HL L C+A +++S LVKP + L + +
Sbjct: 1253 SVVYDSSFDLFKEIG---------HLCHL----CKAIAANSELVKPGGAQCLPSGYSISS 1299
Query: 288 AQAPSHPSCSLVPD-HPLPG 344
HP C +P+ + LPG
Sbjct: 1300 FLQMLHPECKELPEPNLLPG 1319
>gi|41152104|ref|NP_060257.3| chromosome 10 open reading frame 26
[Homo sapiens]
Length = 342
Score = 29.3 bits (64), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 290 SSPLTPVMLTSTRSSSARECHPS*LPRDSVSTKEP 394
SSPL+ +STR S + PS LP D +TK P
Sbjct: 158 SSPLSEPSRSSTRPPSIADPDPSDLPVDRAATKAP 192
>gi|51466004|ref|XP_499249.1| PREDICTED: similar to MUC-B1 [Homo
sapiens]
Length = 293
Score = 28.5 bits (62), Expect = 6.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = -3
Query: 280 RKWQGCSSLRSEGFTRVDEEEAA--------*HRTCKRKAKCDRELRPERHPDSGNRKPE 125
R+ GCSS ++ + EEEAA HRT KRK + +P+R P +G +
Sbjct: 209 RRGSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQ-----QPQRRPAAGTGQRR 263
Query: 124 STMTETPARMSRSWKME 74
+ + A R+ E
Sbjct: 264 GSGSSPSADQQRAQDRE 280
>gi|51465264|ref|XP_166300.4| PREDICTED: absent in melanoma 1 [Homo
sapiens]
Length = 2346
Score = 28.5 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 291 QAPSHPSCSLVPDHPLPGSATPVNCPG 371
Q P+ P C + HPLP A C G
Sbjct: 83 QQPAPPDCGVFVPHPLPAPAGEARCNG 109
>gi|51458639|ref|XP_497676.1| PREDICTED: hypothetical protein
FLJ40434 [Homo sapiens]
Length = 374
Score = 28.5 bits (62), Expect = 6.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 398 AEALWWRRNP--WAVNWGGTPGQ 336
AEALW RR+P WAV W + G+
Sbjct: 15 AEALWSRRDPLAWAVVWADSRGR 37
>gi|21040326|ref|NP_620305.1| SON DNA-binding protein isoform F [Homo
sapiens]
Length = 2426
Score = 28.1 bits (61), Expect = 8.1
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 280 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 101
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 100 RMSRS 86
R SRS
Sbjct: 1927 RRSRS 1931
>gi|21040322|ref|NP_620304.1| SON DNA-binding protein isoform C [Homo
sapiens]
Length = 2325
Score = 28.1 bits (61), Expect = 8.1
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 280 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 101
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 100 RMSRS 86
R SRS
Sbjct: 1927 RRSRS 1931
>gi|16357503|ref|NP_378667.1| type IV alpha 6 collagen isoform B
precursor [Homo sapiens]
Length = 1690
Score = 28.1 bits (61), Expect = 8.1
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = -3
Query: 427 GRGFSRRQGLQRLFGGDGIPGQ--LTGVALPG----RG*SGTSEHDGCEG 296
G+GF +GL L G G PG L G LPG RG G DG G
Sbjct: 593 GQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPG 642
>gi|21040314|ref|NP_115571.1| SON DNA-binding protein isoform B [Homo
sapiens]
Length = 2303
Score = 28.1 bits (61), Expect = 8.1
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 280 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 101
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 100 RMSRS 86
R SRS
Sbjct: 1927 RRSRS 1931
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 100
effective length of database: 11,759,409
effective search space used: 2116693620
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322C-008469 (20050322C-008469) 20050322C-008469
(843 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19527012|ref|NP_598558.1| RIKEN cDNA 4833439L19 [Mus musculus] 30 2.4
Alignment gi|45269152|ref|NP_032398.3| interleukin 7 receptor precursor [M... 29 3.1
Alignment gi|30089697|ref|NP_659148.2| thrombospondin repeat containing 1 ... 29 3.1
Alignment gi|51761924|ref|XP_357781.2| RIKEN cDNA 6330567E21 [Mus musculus] 29 3.1
Alignment gi|51711892|ref|XP_145240.5| PREDICTED: RIKEN cDNA 9530020G05 [M... 29 3.1
Alignment gi|47059065|ref|NP_997612.1| MARVEL (membrane-associating) domai... 29 4.1
Alignment gi|47059474|ref|NP_082860.2| MARVEL (membrane-associating) domai... 29 4.1
Alignment gi|51830434|ref|XP_489569.1| similar to KIAA2018 protein [Mus mu... 28 5.3
Alignment gi|38079942|ref|XP_156169.2| similar to KIAA2018 protein [Mus mu... 28 5.3
Alignment gi|9910308|ref|NP_064357.1| Son cell proliferation protein trunc... 28 5.3
>gi|19527012|ref|NP_598558.1| RIKEN cDNA 4833439L19 [Mus musculus]
Length = 303
Score = 29.6 bits (65), Expect = 2.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 196 KRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRSW 83
K K + + E+HP S P ST +P + SR W
Sbjct: 154 KLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGW 191
>gi|45269152|ref|NP_032398.3| interleukin 7 receptor precursor [Mus
musculus]
Length = 459
Score = 29.3 bits (64), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 654 SVFIQGLAFHLLWKNYIVPTALQS-PKHSKSSTDLAPKQK 538
SVF+ + H+LWK I P S P H K+ L K K
Sbjct: 252 SVFLLVILAHVLWKKRIKPVVWPSLPDHKKTLEQLCKKPK 291
>gi|30089697|ref|NP_659148.2| thrombospondin repeat containing 1
[Mus musculus]
Length = 1036
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -3
Query: 301 EGA*AP*RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPES 122
EG P +W CS G R RTC+ RP RHP++ + +
Sbjct: 43 EGLWGPWGRWASCSQPCGVGVQRRS-------RTCELHPALPLPPRPPRHPEAHRPRGQG 95
Query: 121 TMTETP 104
+ +TP
Sbjct: 96 SRPQTP 101
>gi|51761924|ref|XP_357781.2| RIKEN cDNA 6330567E21 [Mus musculus]
Length = 649
Score = 29.3 bits (64), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 175 RELRPERHPDSGNRKPESTMTETPARMSRS 86
+E++P H DS +KPEST +P+ S
Sbjct: 302 KEVKPPSHSDSLTKKPESTTKSSPSSKGTS 331
>gi|51711892|ref|XP_145240.5| PREDICTED: RIKEN cDNA 9530020G05 [Mus
musculus]
Length = 848
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -1
Query: 291 EPRKGSGKAVAASGQKVSQEWTKKKLLDTGHARGKLSVIESSDRRDTLTQVTESQSRR*Q 112
+ +K + A G +Q KK + +GK SV + D + L+ ++
Sbjct: 337 QSKKSPSRLSPAQGPPQAQSSAKKDSFSSQATKGKDSVPGAKDGKSLLSGPVPGEASWTH 396
Query: 111 KHQPECQDHGK 79
+ Q QDHGK
Sbjct: 397 QRQRRLQDHGK 407
>gi|47059065|ref|NP_997612.1| MARVEL (membrane-associating) domain
containing 3 isoform b [Mus musculus]
Length = 385
Score = 28.9 bits (63), Expect = 4.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 205 RTCKRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRS 86
R R+ + DR+ R +RH D+G+R E E +R SR+
Sbjct: 55 RRAGREQRTDRDQRQDRHRDAGHRASEQRALE-KSRQSRA 93
>gi|47059474|ref|NP_082860.2| MARVEL (membrane-associating) domain
containing 3 isoform a [Mus musculus]
Length = 376
Score = 28.9 bits (63), Expect = 4.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 205 RTCKRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRS 86
R R+ + DR+ R +RH D+G+R E E +R SR+
Sbjct: 55 RRAGREQRTDRDQRQDRHRDAGHRASEQRALE-KSRQSRA 93
>gi|51830434|ref|XP_489569.1| similar to KIAA2018 protein [Mus
musculus]
Length = 2221
Score = 28.5 bits (62), Expect = 5.3
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Frame = +3
Query: 75 SIFHDLDILAGVSVIVDSGFLLPESGCLSGLSSRSHLAFLLH--VLCQAASSSSTLVKPS 248
S H LD+L SV DSG P+S SS SH + VL A ST +
Sbjct: 862 SASHSLDVLNSESVTPDSG---PQSKSTEDCSSPSHESETNEQLVLAPAKPKDSTPILQE 918
Query: 249 DRRLLQPCHFLYGAQAPSHPSCSLVPDHPLPGSATPVNCPGI 374
+ PC S S +++ P+ + G+
Sbjct: 919 TSQGTPPCSVALSNDMKSCTSANVLTPSPIESQSLVSQVSGL 960
>gi|38079942|ref|XP_156169.2| similar to KIAA2018 protein [Mus
musculus]
Length = 2221
Score = 28.5 bits (62), Expect = 5.3
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Frame = +3
Query: 75 SIFHDLDILAGVSVIVDSGFLLPESGCLSGLSSRSHLAFLLH--VLCQAASSSSTLVKPS 248
S H LD+L SV DSG P+S SS SH + VL A ST +
Sbjct: 862 SASHSLDVLNSESVTPDSG---PQSKSTEDCSSPSHESETNEQLVLAPAKPKDSTPILQE 918
Query: 249 DRRLLQPCHFLYGAQAPSHPSCSLVPDHPLPGSATPVNCPGI 374
+ PC S S +++ P+ + G+
Sbjct: 919 TSQGTPPCSVALSNDMKSCTSANVLTPSPIESQSLVSQVSGL 960
>gi|9910308|ref|NP_064357.1| Son cell proliferation protein truncated
isoform [Mus musculus]
Length = 2086
Score = 28.5 bits (62), Expect = 5.3
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 280 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 101
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1855 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKAARARSRTPS 1911
Query: 100 RMSRS 86
R SRS
Sbjct: 1912 RRSRS 1916
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 99
effective length of database: 9,929,945
effective search space used: 1797320045
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)