Search to RefSeq (Human) database
Query= 20050322S-002148 (20050322S-002148) 20050322S-002148
(1106 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|58615669|ref|AP_000645.1| cytochrome c oxidase subunit III [H... 355 2e-99
Alignment gi|17981859|ref|NP_536849.1| cytochrome c oxidase subunit III [H... 355 2e-99
Alignment gi|51464689|ref|XP_496770.1| PREDICTED: similar to beta-glucuron... 124 1e-28
Alignment gi|51459409|ref|XP_496332.1| PREDICTED: similar to OK/SW-CL.16 [... 93 4e-19
Alignment gi|32698718|ref|NP_056482.1| chromosome 9 open reading frame 36 ... 32 0.63
Alignment gi|51467305|ref|XP_372094.2| PREDICTED: similar to chromosome 9 ... 32 0.63
Alignment gi|18959200|ref|NP_055387.1| LATS, large tumor suppressor, homol... 31 1.8
Alignment gi|27545313|ref|NP_115946.2| ubiquitin specific protease 38 [Hom... 29 5.3
Alignment gi|32698688|ref|NP_009105.1| citron [Homo sapiens] 28 9.1
>gi|58615669|ref|AP_000645.1| cytochrome c oxidase subunit III [Homo
sapiens]
Length = 260
Score = 355 bits (910), Expect(2) = 2e-99
Identities = 174/236 (73%), Positives = 192/236 (81%)
Frame = +1
Query: 1 MTHQTHAYHIVNPSP*PLTGALSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RD 180
MTHQ+HAYH+V PSP PLTGALSALL+TSGL + FHF YQW RD
Sbjct: 1 MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRD 60
Query: 181 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 360
+ REST+QGHHT VQKGLRYG+ILFI SEV FF GFF AFYHSSLAPTP+LGG PPTG
Sbjct: 61 VTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
Query: 361 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLPPASE 540
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+E +R +IQAL ITI LG+YFTL ASE
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
Query: 541 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFE 708
Y+E+PFTISDG+YGSTFFVATGFHGLHVIIGSTFL +C +RQL FHFTS HHFGFE
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFE 236
Score = 27.3 bits (59), Expect(2) = 2e-99
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 720 Y*HFVDVV*LFLSLSIY 770
Y HFVDVV LFL +SIY
Sbjct: 241 YWHFVDVVWLFLYVSIY 257
>gi|17981859|ref|NP_536849.1| cytochrome c oxidase subunit III [Homo
sapiens]
Length = 260
Score = 355 bits (910), Expect(2) = 2e-99
Identities = 174/236 (73%), Positives = 192/236 (81%)
Frame = +1
Query: 1 MTHQTHAYHIVNPSP*PLTGALSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RD 180
MTHQ+HAYH+V PSP PLTGALSALL+TSGL + FHF YQW RD
Sbjct: 1 MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRD 60
Query: 181 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 360
+ REST+QGHHT VQKGLRYG+ILFI SEV FF GFF AFYHSSLAPTP+LGG PPTG
Sbjct: 61 VTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
Query: 361 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLPPASE 540
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+E +R +IQAL ITI LG+YFTL ASE
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
Query: 541 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFE 708
Y+E+PFTISDG+YGSTFFVATGFHGLHVIIGSTFL +C +RQL FHFTS HHFGFE
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFE 236
Score = 27.3 bits (59), Expect(2) = 2e-99
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 720 Y*HFVDVV*LFLSLSIY 770
Y HFVDVV LFL +SIY
Sbjct: 241 YWHFVDVVWLFLYVSIY 257
>gi|51464689|ref|XP_496770.1| PREDICTED: similar to
beta-glucuronidase [Homo sapiens]
Length = 347
Score = 124 bits (311), Expect = 1e-28
Identities = 61/94 (64%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Frame = +1
Query: 430 IT*AHHSLIEGDRKHIIQALSITIALGVYFTLPPASEYYEAPFTISD-GVYGSTFFVATG 606
+T + ++ +G ++H + + I L VYFTL ASEY+E PFTISD G+YGSTFFVATG
Sbjct: 250 VTNSTYAADKGQQQHFV-VFNQKIRLCVYFTLLQASEYFETPFTISDDGIYGSTFFVATG 308
Query: 607 FHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFE 708
FHGLHVIIGSTFL +CL+RQL FHFTS HHFGFE
Sbjct: 309 FHGLHVIIGSTFLTICLIRQLTFHFTSKHHFGFE 342
>gi|51459409|ref|XP_496332.1| PREDICTED: similar to OK/SW-CL.16
[Homo sapiens]
Length = 134
Score = 92.8 bits (229), Expect = 4e-19
Identities = 50/132 (37%), Positives = 72/132 (54%)
Frame = +3
Query: 45 MTTYRSPISPFNNIRPNYMIPL*LYTLTISRTINQYFDNIPMVTRHYSREHFPRPPHISC 224
M R P+SP N++RP+++I L L+ +R NQ+ ++IPM+ R +R+H PRPPH +C
Sbjct: 1 MAPNRGPLSPPNDLRPSHVISLPLHNPPHTRPTNQHTNHIPMMARCNTRKHIPRPPHTTC 60
Query: 225 PKRLTIRYNFIYYFRGSVLHWILLSFLPLKPSXXXXXXXXXXXXXXXXXXXXXXXXXXHL 404
P+R +IR N IYY R L I LS LPL+PS H+
Sbjct: 61 PERPSIRDNPIYYLRSFFLRRIFLSLLPLQPSSHPPTRGTLAPNRHHPAKSPRSPTPKHI 120
Query: 405 NPPRLRSIHYLS 440
R+R I++LS
Sbjct: 121 RITRIRGINHLS 132
>gi|32698718|ref|NP_056482.1| chromosome 9 open reading frame 36 [Homo
sapiens]
Length = 1272
Score = 32.3 bits (72), Expect = 0.63
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 405 NPPRLRSIHYLSPSQPNRRGPKTHNPSTIHHHCTRRIL 518
+P L +SP P + PKT S+ HHHC R L
Sbjct: 1230 HPQILHPKKAVSPVSPPQHWPKTSGASSHHHHCPRHCL 1267
>gi|51467305|ref|XP_372094.2| PREDICTED: similar to chromosome 9 open
reading frame 36 [Homo sapiens]
Length = 1369
Score = 32.3 bits (72), Expect = 0.63
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 405 NPPRLRSIHYLSPSQPNRRGPKTHNPSTIHHHCTRRIL 518
+P L +SP P + PKT S+ HHHC R L
Sbjct: 1327 HPQILHPKKAVSPVSPPQHWPKTSGASSHHHHCPRHCL 1364
>gi|18959200|ref|NP_055387.1| LATS, large tumor suppressor, homolog
2 [Homo sapiens]
Length = 1088
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 408 PPRLRSI--HYLSPSQPNRRGPKTHNPSTIHHHCTRRILHPPSSLRILR 548
P R S H P P + P P+T+ ILHP S+R+LR
Sbjct: 403 PSRTNSFNSHQPRPGPPGKAEPSLPAPNTVTAVTAAHILHPVKSVRVLR 451
>gi|27545313|ref|NP_115946.2| ubiquitin specific protease 38 [Homo
sapiens]
Length = 1042
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/83 (27%), Positives = 42/83 (50%)
Frame = -1
Query: 695 WWLDVKWNFSCRSKHTARKVDPMITCNP*NPVATKKVDPYTPSEIVNGAS*YSEAGGRVK 516
W +DV +F+ S++ A+K+ P T + + K+ PY S +V + SE+G
Sbjct: 807 WSVDV--DFTDLSENLAKKLKPSGT----DEASCTKLVPYLLSSVVVHSGISSESGHYYS 860
Query: 515 YTPSAMVMDSAWIMCFRSPSIRL 447
Y + DS++ M +S ++ L
Sbjct: 861 YARNITSTDSSYQMYHQSEALAL 883
>gi|32698688|ref|NP_009105.1| citron [Homo sapiens]
Length = 2027
Score = 28.5 bits (62), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 438 SPSQPNRRGPKTHNPSTIHHHCTRRILHPPS 530
S S PN+RGP T+N H T+R+ P+
Sbjct: 1917 SRSSPNKRGPPTYN-----EHITKRVASSPA 1942
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 103
effective length of database: 11,672,955
effective search space used: 3093333075
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-002148 (20050322S-002148) 20050322S-002148
(1106 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|34538604|ref|NP_904334.1| cytochrome c oxidase subunit III [M... 360 e-101
Alignment gi|47777289|ref|NP_034862.1| leucine rich repeat protein 2, neur... 32 0.70
Alignment gi|51705256|ref|XP_355243.2| proteoglycan 4 [Mus musculus] 29 5.9
Alignment gi|33469071|ref|NP_031734.1| citron [Mus musculus] 28 7.7
>gi|34538604|ref|NP_904334.1| cytochrome c oxidase subunit III [Mus
musculus]
Length = 261
Score = 360 bits (923), Expect(2) = e-101
Identities = 174/236 (73%), Positives = 193/236 (81%)
Frame = +1
Query: 1 MTHQTHAYHIVNPSP*PLTGALSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RD 180
MTHQTHAYH+VNPSP PLTGA SALL+TSGL + FH+ YQW RD
Sbjct: 1 MTHQTHAYHMVNPSPWPLTGAFSALLLTSGLVMWFHYNSITLLTLGLLTNILTMYQWWRD 60
Query: 181 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 360
+IRE T+QGHHT +VQKGLRYG+ILFI+SEV FF GFF AFYHSSL PT +LGGC PPTG
Sbjct: 61 VIREGTYQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTG 120
Query: 361 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLPPASE 540
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+EG R H+ QAL ITI LG+YFT+ ASE
Sbjct: 121 ISPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGKRNHMNQALLITIMLGLYFTILQASE 180
Query: 541 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFE 708
Y+E F+ISDG+YGSTFF+ATGFHGLHVIIGSTFL VCLLRQLKFHFTS HHFGFE
Sbjct: 181 YFETSFSISDGIYGSTFFMATGFHGLHVIIGSTFLIVCLLRQLKFHFTSKHHFGFE 236
Score = 28.1 bits (61), Expect(2) = e-101
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 720 Y*HFVDVV*LFLSLSIY**GS 782
Y HFVDVV LFL +SIY GS
Sbjct: 241 YWHFVDVVWLFLYVSIYWWGS 261
>gi|47777289|ref|NP_034862.1| leucine rich repeat protein 2,
neuronal [Mus musculus]
Length = 730
Score = 32.0 bits (71), Expect = 0.70
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 414 RLRSIHYLSPSQPNRRGPKTHNPSTIHHHCTRRILHPP--SSLRILRSTIH 560
R+ S + P P R+ P+ HHHC PP SS I R+T+H
Sbjct: 680 RVVSAPLVLPWNPGRKQPRCQMGRGCHHHCLNIAEVPPGLSSREITRTTLH 730
>gi|51705256|ref|XP_355243.2| proteoglycan 4 [Mus musculus]
Length = 1053
Score = 28.9 bits (63), Expect = 5.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 3 DPPNTCIPHSK--PKPMTTYRSPISPFNNIRPN 95
DPP T PHSK P TT P++P ++ PN
Sbjct: 234 DPPTT--PHSKVTTSPKTTAAKPVTPKPSLAPN 264
>gi|33469071|ref|NP_031734.1| citron [Mus musculus]
Length = 2055
Score = 28.5 bits (62), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 438 SPSQPNRRGPKTHNPSTIHHHCTRRILHPPS 530
S S PN+RGP T+N H T+R+ P+
Sbjct: 1943 SRSSPNKRGPPTYN-----EHITKRVASSPA 1968
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 102
effective length of database: 9,851,042
effective search space used: 2620377172
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)