Search to RefSeq (Human) database
Query= 20050322S-011922 (20050322S-011922) 20050322S-011922
(1173 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 96 7e-20
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 84 2e-16
Alignment gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3... 74 3e-13
Alignment gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3... 47 2e-05
Alignment gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3... 47 2e-05
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 47 3e-05
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 42 9e-04
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 42 9e-04
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 42 0.001
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 40 0.003
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 95.5 bits (236), Expect = 7e-20
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 209
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
+A + ++EAVK KIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 100 VAEITTIEAVKCKIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVE 159
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A E LAT L ++ A
Sbjct: 160 EELDHAQEYLATALQKLEEAEKA 182
>gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/83 (39%), Positives = 41/83 (49%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++E VK KIQVLQQQAD+AE+RA L E
Sbjct: 1 MAGIATMEEVKCKIQVLQQQADDAEERAERLQFE-------------------------- 34
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERL T L ++E A
Sbjct: 35 EELDHAQERLTTALQKLEEEEKA 57
>gi|51466096|ref|XP_379997.2| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/83 (39%), Positives = 41/83 (49%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++E VK KIQVLQQQAD+AE+RA L E
Sbjct: 1 MAGIATMEEVKCKIQVLQQQADDAEERAERLQFE-------------------------- 34
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERL T L ++E A
Sbjct: 35 EELDHAQERLTTALQKLEEEEKA 57
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +1
Query: 181 AHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAHERLATRL 321
A GL RELDG VA L RRIQL +E+LD A ERLAT L
Sbjct: 17 AQGLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATAL 63
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 42.0 bits (97), Expect = 9e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +1
Query: 121 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 300
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 301 ERLATRLPIFKDERPA 348
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 42.0 bits (97), Expect = 9e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +1
Query: 121 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 300
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 301 ERLATRLPIFKDERPA 348
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +1
Query: 112 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 291
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 292 LAHERLATRLPIFKDERPA 348
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +1
Query: 118 LEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLA 297
+EA+K+K+Q+L+ + A DRA E +A + ++++ +++LD A
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 298 HERLATRLPIFKDERPA 348
ERLAT L ++ A
Sbjct: 62 QERLATALQKLEEAEKA 78
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 103
effective length of database: 11,672,955
effective search space used: 3350138085
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-011922 (20050322S-011922) 20050322S-011922
(1173 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 91 1e-18
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 42 6e-04
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 42 0.001
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 42 0.001
Alignment gi|6679733|ref|NP_032003.1| coagulation factor VIII [Mus musculus] 30 3.8
Alignment gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide [... 30 3.8
Alignment gi|15150793|ref|NP_085032.1| pre-B-cell leukemia transcription f... 30 3.8
Alignment gi|31543735|ref|NP_780330.2| solute carrier family 38, member 2 ... 29 6.4
Alignment gi|17978284|ref|NP_536714.1| small conductance calcium-activated... 28 8.4
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 90.9 bits (224), Expect = 1e-18
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQAD+AEDRA GL RELDG A L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A E+LAT L ++ A
Sbjct: 61 EELDRAQEQLATALQNLEEAEKA 83
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +1
Query: 121 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 300
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 301 ERLATRLPIFKDERPA 348
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 112 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 291
+ L +++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 292 LAHERLATRLPIFKDERPA 348
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +1
Query: 112 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 291
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 292 LAHERLATRLPIFKDERPA 348
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|6679733|ref|NP_032003.1| coagulation factor VIII [Mus musculus]
Length = 2319
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 465 IRKVDWYSKSGKYGEGHNSKQKGVAIFIIAVSAIWIYMFSGSLILKNR 322
I D YS+ K G + +QK FI AV +W Y S S +L+NR
Sbjct: 1663 IEDFDIYSEDIKQGP-RSFQQKTRHYFIAAVERLWDYGMSTSHVLRNR 1709
>gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide [Mus
musculus]
Length = 815
Score = 29.6 bits (65), Expect = 3.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 143 WILRFTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSR 18
W T S E P R R+ GGRS AR C C SC +R
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNR 59
>gi|15150793|ref|NP_085032.1| pre-B-cell leukemia transcription
factor 4 [Mus musculus]
Length = 74
Score = 29.6 bits (65), Expect = 3.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 61 PPLPAARCVRLRAMAGLNSLEAVKRKIQVLQQQADEAEDRAHGLH 195
PP PA R + A G ++ + +++ + + Q DEA+ R H L+
Sbjct: 9 PPQPAPRRLPTTAPLGHDTSDVLQQIMAITDQSLDEAQARKHALN 53
>gi|31543735|ref|NP_780330.2| solute carrier family 38, member 2
[Mus musculus]
Length = 504
Score = 28.9 bits (63), Expect = 6.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 438 SGKYGEGHNSKQKGVAIFIIAVSAIWIY-MFSGSLILKNRQAGGQSFMSQI 289
SG G + G+A+FII ++ + I+ ++S L+LK GG Q+
Sbjct: 87 SGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQL 137
>gi|17978284|ref|NP_536714.1| small conductance calcium-activated
potassium channel protein 3 [Mus musculus]
Length = 731
Score = 28.5 bits (62), Expect = 8.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 541 YTPKHTKLPLDLTFSIP-FFNVSTPFITLLLHATLMTD*LHLR*ISLNGILFN 696
YTP + +D+ SIP F + +LLH+ L TD +LN I FN
Sbjct: 394 YTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFN 446
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 102
effective length of database: 9,851,042
effective search space used: 2837100096
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)