Search to RefSeq (Human) database
Query= 20050322S-014982 (20050322S-014982) 20050322S-014982
(748 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 189 2e-48
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 182 3e-46
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 182 3e-46
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 113 2e-25
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 78 6e-15
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 70 1e-12
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 67 1e-11
Alignment gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3... 64 1e-10
Alignment gi|21735548|ref|NP_009117.2| centrosomal protein 2 [Homo sapiens] 53 3e-07
Alignment gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4... 49 3e-06
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 54.7 bits (130), Expect = 7e-08
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 113 bits (282), Expect = 2e-25
Identities = 59/109 (54%), Positives = 81/109 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELD+
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 110
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 219
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 78.2 bits (191), Expect = 6e-15
Identities = 47/118 (39%), Positives = 64/118 (54%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
QERLATALQKL M +E EEK+ A EA+R
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 124
Score = 58.2 bits (139), Expect = 6e-09
Identities = 30/110 (27%), Positives = 64/110 (58%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 115
Score = 52.4 bits (124), Expect = 3e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
Score = 33.5 bits (75), Expect = 0.16
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE-------DEL 237
++KM++ ++ + A AE+A+ + K +E EL +++ + +E +EL
Sbjct: 102 EEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEEL 161
Query: 238 DKYFQNLKDA--------------QEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQ 375
NLK +E+++L K +AE R + +E+ +D +
Sbjct: 162 KNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLE 221
Query: 376 ERLATALQK 402
E+LA A ++
Sbjct: 222 EKLAQAKEE 230
Score = 32.3 bits (72), Expect = 0.36
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Frame = +1
Query: 124 DRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKAS 303
++ E E K A+ ++ + + + +KL E EL++ A+E+ E+S+ K
Sbjct: 103 EKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELER-------AEERAEVSELKCG 155
Query: 304 DAEGDVAALNRRIQLVE-------EELDRAQERLATALQKLXXXXXXXXXXXXXMNGMEK 462
D E ++ + ++ +E E+ D+ +E + KL + +EK
Sbjct: 156 DLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEK 215
Query: 463 AGH*KEEKI 489
EEK+
Sbjct: 216 TIDDLEEKL 224
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 70.5 bits (171), Expect = 1e-12
Identities = 43/115 (37%), Positives = 61/115 (53%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E ++ AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/109 (28%), Positives = 65/109 (59%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD+
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 115
Score = 48.1 bits (113), Expect = 6e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 67.0 bits (162), Expect = 1e-11
Identities = 39/74 (52%), Positives = 45/74 (60%)
Frame = +1
Query: 268 QEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXXXXXXXXM 447
Q +L+ ++ AEGDVA LNRRIQLVEEELDRAQERLATALQKL M
Sbjct: 21 QRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESERGM 80
Query: 448 NGMEKAGH*KEEKI 489
+E EEK+
Sbjct: 81 KVIENRAMKDEEKM 94
Score = 37.7 bits (86), Expect = 0.009
Identities = 24/86 (27%), Positives = 47/86 (54%)
Frame = +1
Query: 136 QAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEG 315
Q E D K E ++ E ++ L ++++ E+ELD+ + L A +KLE ++K A ++E
Sbjct: 21 QRELDGK--REWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 316 DVAALNRRIQLVEEELDRAQERLATA 393
+ + R EE+++ + +L A
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEA 104
>gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 209
Score = 63.5 bits (153), Expect = 1e-10
Identities = 37/93 (39%), Positives = 52/93 (55%)
Frame = +1
Query: 211 KLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLAT 390
K++ + + D + + Q ++E ++ +AE +VA+LNRRIQLVEEELD AQE LAT
Sbjct: 112 KIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVEEELDHAQEYLAT 171
Query: 391 ALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
ALQKL M +E EEK+
Sbjct: 172 ALQKLEEAEKAADESERGMKVVENRALKDEEKM 204
Score = 53.5 bits (127), Expect = 2e-07
Identities = 28/100 (28%), Positives = 59/100 (59%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+EA+K K+Q+L+ ++A +RAE + + + + ++ E E+ L ++++ E+ELD
Sbjct: 106 IEAVKCKIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVEEELDHA 165
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELD 366
+ L A +KLE ++K A ++E + + R EE+++
Sbjct: 166 QEYLATALQKLEEAEKAADESERGMKVVENRALKDEEKME 205
>gi|21735548|ref|NP_009117.2| centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENA-----IDRAEQAES----DKKAAEEKCKQVEEELTHLQKKL 216
A++ + Q+L+L++EN ++ AEQA + D AE++ + + E+ THL+ +L
Sbjct: 609 ALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 217 KGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATAL 396
+ E+ + +L+D QE+ E +KK S++ A +++ + +E R +E LA A+
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQEEVLARAV 728
Query: 397 QK 402
Q+
Sbjct: 729 QE 730
Score = 37.0 bits (84), Expect = 0.015
Identities = 22/105 (20%), Positives = 54/105 (51%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
EA+ +K L+ + A + + ++D + +E+ ++++++L+ + + + +L++
Sbjct: 655 EALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLH 714
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
Q K +E L + ++ + AAL R+Q VE + E+L
Sbjct: 715 QEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQL 759
>gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 158
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +1
Query: 133 EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAE 312
E+AE + +E KC +EEEL ++ LK E +KY + +E+++L K +AE
Sbjct: 51 ERAEERVEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAE 110
Query: 313 GDVAALNRRIQLVEEELDRAQERLATALQK 402
R + +E+ +D +E+LA A ++
Sbjct: 111 TRAEFAERTVAKLEKTIDDLEEKLAQAKEE 140
Score = 33.9 bits (76), Expect = 0.12
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Frame = +1
Query: 124 DRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKAS 303
++ E E K A+ ++ + + + +KL E EL++ A+E++E+S+ K
Sbjct: 13 EKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELER-------AEERVEVSELKCG 65
Query: 304 DAEGDVAALNRRIQLVE-------EELDRAQERLATALQKLXXXXXXXXXXXXXMNGMEK 462
D E ++ + ++ +E E+ D+ +E + KL + +EK
Sbjct: 66 DLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTVAKLEK 125
Query: 463 AGH*KEEKI 489
EEK+
Sbjct: 126 TIDDLEEKL 134
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 99
effective length of database: 11,788,227
effective search space used: 1756445823
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-014982 (20050322S-014982) 20050322S-014982
(748 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 189 2e-48
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 183 8e-47
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 182 2e-46
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 70 2e-12
Alignment gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptid... 45 3e-05
Alignment gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptid... 45 5e-05
Alignment gi|51828474|ref|XP_354617.2| PREDICTED: myosin, heavy polypeptid... 44 1e-04
Alignment gi|51712529|ref|XP_132740.3| similar to TATA element modulatory ... 42 3e-04
Alignment gi|31981983|ref|NP_033313.2| stromal interaction molecule 1 [Mus... 42 3e-04
Alignment gi|50053824|ref|NP_001001932.1| early endosome antigen 1 [Mus mu... 42 5e-04
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.7 bits (130), Expect = 6e-08
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 183 bits (465), Expect = 8e-47
Identities = 97/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 8e-07
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 182 bits (461), Expect = 2e-46
Identities = 100/160 (62%), Positives = 117/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 48.1 bits (113), Expect = 5e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 265
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 69.7 bits (169), Expect = 2e-12
Identities = 39/99 (39%), Positives = 56/99 (56%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D + Q +L+ +++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
QE+LATALQ L M +E EEK+
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKM 105
Score = 55.5 bits (132), Expect = 3e-08
Identities = 29/110 (26%), Positives = 63/110 (57%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ ++A DRA+ + + E+ ++ E + L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A + LE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEA 115
Score = 51.2 bits (121), Expect = 6e-07
Identities = 31/111 (27%), Positives = 58/111 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + + A +RAE +E KC +EEEL ++ LK E +KY
Sbjct: 127 EEVARKLVILEGELKRAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
+ +E+++L K +AE R + +E+ +D +E+LA A ++
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEE 230
Score = 41.2 bits (95), Expect = 7e-04
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE---DE 234
A E + +Q L E A A+++E K E + + EE++ L+ +LK + DE
Sbjct: 66 AQEQLATALQNL----EEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDE 121
Query: 235 LDKYFQN-----------LKDAQEKLELSKKKASDAEGDVAALNRRIQLVE-------EE 360
D+ ++ LK A+E+ E+S+ K D E ++ + ++ +E E+
Sbjct: 122 ADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEK 181
Query: 361 LDRAQERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
D+ +E + KL ++ +EK EEK+
Sbjct: 182 EDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKL 224
Score = 28.5 bits (62), Expect = 4.4
Identities = 20/99 (20%), Positives = 46/99 (46%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + K L+ + +N + + E+ + EK + EEE+ L KLK E +
Sbjct: 148 EVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAE 207
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELD 366
+ + ++ ++ ++K + A+ + L++ + EL+
Sbjct: 208 RTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
>gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptide 1,
skeletal muscle, adult [Mus musculus]
Length = 1942
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTED---E 234
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++LQ K++ + +
Sbjct: 1055 LERAKRKLEGDLKLAQESTMD----VENDKQQLDEKLKKKEFEMSNLQSKIEDEQALGMQ 1110
Query: 235 LDKYFQNL----KDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L K + L ++ +E++E + + AE + L+R ++ + E L+ A
Sbjct: 1111 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1160
Score = 41.2 bits (95), Expect = 7e-04
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQN 255
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E Q
Sbjct: 1744 IQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QT 1796
Query: 256 LKDAQEKLELSKKKA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+KD Q +L+ +++ A + + L R++ +E E++ Q+R A++ L
Sbjct: 1797 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVENEQKRNVEAIKGL 1847
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++ + +++D E A + E D K A+E VE + L +KLK E E+
Sbjct: 1041 LEGSLEQEKKIRMDLERA---KRKLEGDLKLAQESTMDVENDKQQLDEKLKKKEFEMSNL 1097
Query: 247 FQNLKDAQEK-LELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
++D Q ++L KK + L RI+ +EEE++ + A A
Sbjct: 1098 QSKIEDEQALGMQLQKK--------IKELQARIEELEEEIEAERASRAKA 1139
Score = 32.3 bits (72), Expect = 0.30
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYFQ 252
+++KM L +K N + Q+E+D A AEE+C Q+ + L+ K+K + + +
Sbjct: 880 LEEKMVALMQEK-NDLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 938
Query: 253 NLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ K + + S+ + D+ L + VE+E + ++ +++
Sbjct: 939 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEM 989
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/96 (22%), Positives = 46/96 (47%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
+ IK K+Q+ KE +RAE E K +++E+E + L+K + E L K
Sbjct: 914 QLIKTKIQLEAKIKE-VTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVE 972
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEE 357
+ + K++ ++ + + +A L + + ++E
Sbjct: 973 KEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQE 1008
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/101 (22%), Positives = 52/101 (51%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E +K++ + L+ + + ++ + E+ KQ+E+E + LQ L+ E L+
Sbjct: 1502 LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQIEQEKSELQAALEEAEASLE-- 1559
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDR 369
+ K + +LEL++ K+ ++R+I +EE+D+
Sbjct: 1560 HEEGKILRIQLELNQVKSE--------IDRKIAEKDEEIDQ 1592
>gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptide 4,
skeletal muscle [Mus musculus]
Length = 1967
Score = 45.1 bits (105), Expect = 5e-05
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTED---E 234
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++LQ K++ + +
Sbjct: 1080 LERAKRKLEGDLKLAQESTMD----IENDKQQLDEKLKKKEFEMSNLQSKIEDEQALGMQ 1135
Query: 235 LDKYFQNL----KDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L K + L ++ +E++E + + AE + L+R ++ + E L+ A
Sbjct: 1136 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1185
Score = 41.2 bits (95), Expect = 7e-04
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQN 255
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E Q
Sbjct: 1769 IQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME-------QT 1821
Query: 256 LKDAQEKLELSKKKA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+KD Q +L+ +++ A + + L R++ +E E++ Q+R A++ L
Sbjct: 1822 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVENEQKRNIEAVKGL 1872
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++ + L++D E A + E D K A+E +E + L +KLK E E+
Sbjct: 1066 LEGSLEQEKKLRMDLERA---KRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNL 1122
Query: 247 FQNLKDAQEK-LELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
++D Q ++L KK + L RI+ +EEE++ + A A
Sbjct: 1123 QSKIEDEQALGMQLQKK--------IKELQARIEELEEEIEAERASRAKA 1164
Score = 33.9 bits (76), Expect = 0.10
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYFQ 252
+++KM L +K N + QAE+D A AEE+C Q+ + L+ K+K EL + +
Sbjct: 905 LEEKMVALMQEK-NDLQLQVQAEADGLADAEERCDQLIKTKIQLEAKIK----ELTERAE 959
Query: 253 NLKDAQEKLELSKKK----ASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ ++ +L K+K S+ + D+ L + VE+E + ++ +++
Sbjct: 960 DEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEM 1014
Score = 32.3 bits (72), Expect = 0.30
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = +1
Query: 100 KLDKEN-AIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD-------KYFQN 255
KL KE A+ A Q D AEE LT + KL+ D+L+ K +
Sbjct: 1023 KLTKEKKALQEAHQQTLDDLQAEE---DKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMD 1079
Query: 256 LKDAQEKLE----LSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
L+ A+ KLE L+++ D E D L+ +++ E E+ Q ++
Sbjct: 1080 LERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKI 1126
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/96 (22%), Positives = 47/96 (48%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
+ IK K+Q+ KE +RAE E K +++E+E + L+K + E L K
Sbjct: 939 QLIKTKIQLEAKIKE-LTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVE 997
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEE 357
+ + K++ ++ + + ++A L + + ++E
Sbjct: 998 KEKHATENKVKNLTEEMAGLDENIAKLTKEKKALQE 1033
>gi|51828474|ref|XP_354617.2| PREDICTED: myosin, heavy polypeptide
8, skeletal muscle, perinatal [Mus musculus]
Length = 1045
Score = 43.5 bits (101), Expect = 1e-04
Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKL---KGTEDE 234
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++L K+ + E +
Sbjct: 159 LERAKRKLEGDLKLAQESTMD----IENDKQQLDEKLKKKEFEISNLISKIEDEQAVEIQ 214
Query: 235 LDKYFQNL----KDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L K + L ++ +E++E + + AE + L+R ++ + E L+ A
Sbjct: 215 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 264
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++ + L++D E A + E D K A+E +E + L +KLK E E+
Sbjct: 145 LEGSLEQEKKLRMDLERA---KRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEISNL 201
Query: 247 FQNLKDAQE-KLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
++D Q +++L KK + L RI+ +EEE++ + A A
Sbjct: 202 ISKIEDEQAVEIQLQKK--------IKELQARIEELEEEIEAERASRAKA 243
Score = 40.8 bits (94), Expect = 9e-04
Identities = 26/111 (23%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQN 255
++ +++ + + NA ++A++A +D E+ K+ ++ HL++ K E Q
Sbjct: 848 LQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME-------QT 900
Query: 256 LKDAQEKLELSKKKA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+KD Q +L+ +++ A + + L R++ +E E++ Q+R A A++ L
Sbjct: 901 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVENEQKRNAEAVKGL 951
Score = 32.0 bits (71), Expect = 0.40
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEE--ELTHLQ--------KKLKG- 222
++++ +L+ + E EQ E +K AE++ E +L H Q KKL+
Sbjct: 785 VERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLEND 844
Query: 223 ---TEDELDKYFQNLKDAQEKLELSKKKASDA---------EGDVAA-LNRRIQLVEEEL 363
+ E+++ Q ++A+EK +KK +DA E D +A L R + +E+ +
Sbjct: 845 VSQLQSEVEEVIQESRNAEEK---AKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTV 901
Query: 364 DRAQERLATALQ 399
Q RL A Q
Sbjct: 902 KDLQHRLDEAEQ 913
Score = 31.2 bits (69), Expect = 0.68
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 100 KLDKEN-AIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEK 276
KL KE A+ A Q D AEE LT + KL+ D+L+ + K +
Sbjct: 102 KLTKEKKALQEAHQQTLDDLQAEE---DKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMD 158
Query: 277 LELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
LE +K+K EGD+ +E + + E+L
Sbjct: 159 LERAKRK---LEGDLKLAQESTMDIENDKQQLDEKL 191
Score = 31.2 bits (69), Expect = 0.68
Identities = 22/96 (22%), Positives = 47/96 (48%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
+ IK K+Q+ KE +RAE E K +++E+E + L+K + E L K
Sbjct: 18 QLIKNKIQLEAKIKE-VTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVE 76
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEE 357
+ + K++ ++ + + ++A L + + ++E
Sbjct: 77 KEKHATENKVKNLTEEMAGLDENIAKLTKEKKALQE 112
Score = 28.1 bits (61), Expect = 5.7
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 142 ESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGD 318
E+D A AEE+C+Q+ + L+ K+K + + + + K + + S+ + D
Sbjct: 5 EADSLADAEERCEQLIKNKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKD 64
Query: 319 VAALNRRIQLVEEELDRAQERLATALQKL 405
+ L + VE+E + ++ +++
Sbjct: 65 IDDLELTLAKVEKEKHATENKVKNLTEEM 93
Score = 27.3 bits (59), Expect = 9.8
Identities = 22/101 (21%), Positives = 51/101 (50%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+E ++++ + L+ + + ++ + E+ KQVE+E +Q L+ E L+
Sbjct: 606 LETLRRENKNLQQEISDLTEQIAEGGKHIHELEKIKKQVEQEKCEIQAALEEAEASLE-- 663
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDR 369
+ K + +LEL++ K+ ++R+I +EE+D+
Sbjct: 664 HEEGKILRIQLELNQVKSE--------IDRKIAEKDEEIDQ 696
>gi|51712529|ref|XP_132740.3| similar to TATA element modulatory
factor 1 [Mus musculus]
Length = 1123
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +1
Query: 82 KKMQMLKLDKENAIDRAEQAESDKKAA----EEKCKQVEEELTHLQKKLKGTEDELDKYF 249
+K+ +L N I + + D + K K++EEEL HL++ L G E+ ++
Sbjct: 593 EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHR 652
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
+N+K +E +K + D+ L + + + LD A L
Sbjct: 653 ENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYREL 697
Score = 35.0 bits (79), Expect = 0.047
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAES-------DKKAAEEKCKQVEEELTHLQKKLKGT 225
M +K++ + K+ R +AE ++ AA+++ K ++EEL +
Sbjct: 516 MFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNSSQTA 575
Query: 226 E--DELDKYFQNLKDAQEKLE---------LSKKKASDAEGD--VAALNRRIQLVEEELD 366
+ E D+ Q L + EKL + K +A D + + +A LNR+ + +EEEL
Sbjct: 576 DLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQ 635
Query: 367 RAQERL 384
++ L
Sbjct: 636 HLRQVL 641
>gi|31981983|ref|NP_033313.2| stromal interaction molecule 1 [Mus
musculus]
Length = 685
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKA----AEEKCKQVEEELTHLQKKLKGTEDELDKY 246
K+ M+ + D E + RAEQ+ D + A+E+ + VE E HL+KKL+ + +
Sbjct: 238 KEHMKKMMKDLEG-LHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQE 296
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLA-TALQK 402
Q LK+ +E E + + AE ++ + ++ E+EL+ A ALQK
Sbjct: 297 AQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSSWYAPEALQK 349
>gi|50053824|ref|NP_001001932.1| early endosome antigen 1 [Mus
musculus]
Length = 1411
Score = 41.6 bits (96), Expect = 5e-04
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Frame = +1
Query: 106 DKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDA-----Q 270
+KE ++++ AE + E KC+Q E+E+T L ++LK + E K NLKDA Q
Sbjct: 1116 EKELVAEKSKLAEME----EIKCRQ-EKEITKLNEELKSHKQESIKEITNLKDAKQLLIQ 1170
Query: 271 EKLEL-----SKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+KLEL S K A + E + L R Q+ +EE R +E
Sbjct: 1171 QKLELQGRVDSLKAALEQEKESQQLMRE-QVKKEEEKRKEE 1210
Score = 37.7 bits (86), Expect = 0.007
Identities = 21/102 (20%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 103 LDKENAIDRAE-QAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKL 279
L+ E + A + + ++ + EK + E+++ LQ KL E++L + N + Q +L
Sbjct: 424 LETERQLGEAHGRLKEQRQLSSEKLMEKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQL 483
Query: 280 ELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
E SK++ + + + +++ + +L++ ++ QK+
Sbjct: 484 EKSKQQHQEQQALQQSATAKLREAQNDLEQVLRQIGDKDQKI 525
Score = 34.3 bits (77), Expect = 0.080
Identities = 21/106 (19%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKAA---EEKCKQVEEELTHLQKKLKGTEDELDKYF 249
K+ + +L+ ++E+ + + E + +EK ++++LT L +KLK + +
Sbjct: 536 KESVSLLEKEREDLYAKIQAGEGETAVLNQLQEKNHALQQQLTQLTEKLKNQSESHKQAE 595
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLA 387
+NL D ++ + + A D V +L + + +L+ ++E+++
Sbjct: 596 ENLHDQVQEQKAHLRAAQDR---VLSLETSVSELSSQLNESKEKVS 638
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/105 (25%), Positives = 50/105 (47%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E KK+++ L+ + +NA+ + E+ +++ Q +EL + KL + +K
Sbjct: 969 EQKKKQIEALQGEVKNAVSQKTVLENK---LQQQSSQAAQELAAEKGKLSALQSNYEKCQ 1025
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
+LK Q L E ++ A + ++ VEE+L AQE L
Sbjct: 1026 ADLKQLQSDLY-------GKESELLATRQDLKSVEEKLTLAQEDL 1063
Score = 31.2 bits (69), Expect = 0.68
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 28/137 (20%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQ----------------- 207
K+ +Q+ L ++R ++E K ++CK+++ E HL+
Sbjct: 228 KELVQVQTLMDNMTLERERESEKLK----DECKKLQSEHAHLEATINQLRSELAKGPQEV 283
Query: 208 -------KKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQ--LVEEE 360
+KLKG+ +EL + QNL + +K +L + + +A + +Q L + +
Sbjct: 284 AVYVQEIQKLKGSINELTQKNQNLTEKLQKKDLDYTHLEEKHNEESASRKTLQASLHQRD 343
Query: 361 LD--RAQERLATALQKL 405
LD + Q RL + L
Sbjct: 344 LDCQQLQARLTASESSL 360
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 98
effective length of database: 9,956,246
effective search space used: 1493436900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)