Search to RefSeq (Human) database
Query= 20050322S-021953 (20050322S-021953) 20050322S-021953
(1128 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22538814|ref|NP_002976.2| small inducible cytokine A5 precurs... 113 3e-25
Alignment gi|27477072|ref|NP_066286.1| chemokine (C-C motif) ligand 3-like... 79 5e-15
Alignment gi|4506843|ref|NP_002974.1| chemokine (C-C motif) ligand 3 [Homo... 79 5e-15
Alignment gi|47779271|ref|NP_001001437.1| chemokine (C-C motif) ligand 3-l... 77 3e-14
Alignment gi|4506845|ref|NP_002975.1| chemokine (C-C motif) ligand 4 precu... 75 7e-14
Alignment gi|46275832|ref|NP_996890.1| chemokine (C-C motif) ligand 4-like... 75 9e-14
Alignment gi|47824887|ref|NP_001001435.1| chemokine (C-C motif) ligand 4-l... 75 9e-14
Alignment gi|5174671|ref|NP_006063.1| chemokine (C-C motif) ligand 26 prec... 68 1e-11
Alignment gi|14589961|ref|NP_116739.1| chemokine (C-C motif) ligand 14 iso... 67 2e-11
Alignment gi|14589959|ref|NP_116738.1| chemokine (C-C motif) ligand 14 iso... 67 2e-11
>gi|22538814|ref|NP_002976.2| small inducible cytokine A5 precursor
[Homo sapiens]
Length = 91
Score = 113 bits (282), Expect = 3e-25
Identities = 52/91 (57%), Positives = 59/91 (64%)
Frame = +1
Query: 247 MKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCFSYLSRPLPRAHLQEYFYTSSKCSMA 426
MKVS CCF+Y++RPLPRAH++EYFYTS KCS
Sbjct: 1 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP 60
Query: 427 AVVFITRKNRQVCANPEKKWVREYINPLELS 519
AVVF+TRKNRQVCANPEKKWVREYIN LE+S
Sbjct: 61 AVVFVTRKNRQVCANPEKKWVREYINSLEMS 91
>gi|27477072|ref|NP_066286.1| chemokine (C-C motif) ligand 3-like 1
precursor [Homo sapiens]
Length = 93
Score = 79.3 bits (194), Expect = 5e-15
Identities = 31/59 (52%), Positives = 48/59 (81%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY SR +P+ + +YF TSS+CS +V+F+T++ RQVCA+P ++WV++Y++ LELS
Sbjct: 34 CCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELS 92
>gi|4506843|ref|NP_002974.1| chemokine (C-C motif) ligand 3 [Homo
sapiens]
Length = 92
Score = 79.3 bits (194), Expect = 5e-15
Identities = 31/59 (52%), Positives = 48/59 (81%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY SR +P+ + +YF TSS+CS V+F+T+++RQVCA+P ++WV++Y++ LELS
Sbjct: 33 CCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELS 91
>gi|47779271|ref|NP_001001437.1| chemokine (C-C motif) ligand 3-like
precursor [Homo sapiens]
Length = 93
Score = 76.6 bits (187), Expect = 3e-14
Identities = 30/59 (50%), Positives = 47/59 (79%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY SR +P+ + +YF TSS+CS +V+F+T++ RQVCA+P ++WV++Y++ LE S
Sbjct: 34 CCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLEPS 92
>gi|4506845|ref|NP_002975.1| chemokine (C-C motif) ligand 4
precursor [Homo sapiens]
Length = 92
Score = 75.5 bits (184), Expect = 7e-14
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY +R LPR + +Y+ TSS CS AVVF T++++QVCA+P + WV+EY+ LEL+
Sbjct: 34 CCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN 92
>gi|46275832|ref|NP_996890.1| chemokine (C-C motif) ligand 4-like 1
precursor [Homo sapiens]
Length = 92
Score = 75.1 bits (183), Expect = 9e-14
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY +R LPR + +Y+ TSS CS AVVF T++ +QVCA+P + WV+EY+ LEL+
Sbjct: 34 CCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN 92
>gi|47824887|ref|NP_001001435.1| chemokine (C-C motif) ligand 4-like
precursor [Homo sapiens]
Length = 92
Score = 75.1 bits (183), Expect = 9e-14
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY +R LPR + +Y+ TSS CS AVVF T++ +QVCA+P + WV+EY+ LEL+
Sbjct: 34 CCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN 92
>gi|5174671|ref|NP_006063.1| chemokine (C-C motif) ligand 26
precursor [Homo sapiens]
Length = 94
Score = 67.8 bits (164), Expect = 1e-11
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CCF Y +PLP ++ Y +TS+ CS AV+F T++ ++VC +P KKWV++YI+ L+
Sbjct: 33 CCFQYSHKPLPWTWVRSYEFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLK 89
>gi|14589961|ref|NP_116739.1| chemokine (C-C motif) ligand 14
isoform 1 precursor [Homo sapiens]
Length = 93
Score = 67.4 bits (163), Expect = 2e-11
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CCF+Y + +PR + +Y+ T+S+CS +VFIT++ VC NP KWV++YI ++
Sbjct: 35 CCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMK 91
>gi|14589959|ref|NP_116738.1| chemokine (C-C motif) ligand 14
isoform 2 precursor [Homo sapiens]
Length = 109
Score = 67.4 bits (163), Expect = 2e-11
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CCF+Y + +PR + +Y+ T+S+CS +VFIT++ VC NP KWV++YI ++
Sbjct: 51 CCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMK 107
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 103
effective length of database: 11,672,955
effective search space used: 3175043760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-021953 (20050322S-021953) 20050322S-021953
(1128 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7305461|ref|NP_038681.1| chemokine (C-C motif) ligand 5 [Mus ... 106 3e-23
Alignment gi|7305459|ref|NP_038680.1| chemokine (C-C motif) ligand 4 [Mus ... 78 9e-15
Alignment gi|6755432|ref|NP_035467.1| chemokine (C-C motif) ligand 3 [Mus ... 74 1e-13
Alignment gi|6755430|ref|NP_035463.1| chemokine (C-C motif) ligand 2 [Mus ... 64 2e-10
Alignment gi|6677879|ref|NP_033163.1| chemokine (C-C motif) ligand 22 [Mus... 60 2e-09
Alignment gi|6755418|ref|NP_035460.1| small chemokine (C-C motif) ligand 1... 54 2e-07
Alignment gi|8394248|ref|NP_058656.1| chemokine (C-C motif) ligand 20 [Mus... 50 2e-06
Alignment gi|9625035|ref|NP_062523.1| chemokine (C-C motif) ligand 24 [Mus... 49 4e-06
Alignment gi|6755420|ref|NP_035461.1| chemokine (C-C motif) ligand 12 [Mus... 48 1e-05
Alignment gi|10946818|ref|NP_067418.1| chemokine (C-C motif) ligand 8 [Mus... 47 2e-05
>gi|7305461|ref|NP_038681.1| chemokine (C-C motif) ligand 5 [Mus
musculus]
Length = 91
Score = 106 bits (264), Expect = 3e-23
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCF+YLS LPRAH++EYFYTSSKCS AVVF+TR+NRQVCANPEKKWV+EYIN LE+S
Sbjct: 33 CCFAYLSLELPRAHVKEYFYTSSKCSNLAVVFVTRRNRQVCANPEKKWVQEYINYLEMS 91
>gi|7305459|ref|NP_038680.1| chemokine (C-C motif) ligand 4 [Mus
musculus]
Length = 92
Score = 78.2 bits (191), Expect = 9e-15
Identities = 33/59 (55%), Positives = 45/59 (76%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY SR L R+ + +Y+ TSS CS AVVF+T++ RQ+CANP + WV EY++ LEL+
Sbjct: 34 CCFSYTSRQLHRSFVMDYYETSSLCSKPAVVFLTKRGRQICANPSEPWVTEYMSDLELN 92
>gi|6755432|ref|NP_035467.1| chemokine (C-C motif) ligand 3 [Mus
musculus]
Length = 92
Score = 74.3 bits (181), Expect = 1e-13
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CCFSY SR +PR + +YF TSS CS V+F+T++NRQ+CA+ ++ WV+EYI LEL+
Sbjct: 34 CCFSY-SRKIPRQFIVDYFETSSLCSQPGVIFLTKRNRQICADSKETWVQEYITDLELN 91
>gi|6755430|ref|NP_035463.1| chemokine (C-C motif) ligand 2 [Mus
musculus]
Length = 148
Score = 63.5 bits (153), Expect = 2e-10
Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYF-YTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CC+S+ S+ +P + L+ Y TSS+C AVVF+T+ R+VCA+P+K+WV+ YI L+
Sbjct: 34 CCYSFTSKMIPMSRLESYKRITSSRCPKEAVVFVTKLKREVCADPKKEWVQTYIKNLD 91
>gi|6677879|ref|NP_033163.1| chemokine (C-C motif) ligand 22 [Mus
musculus]
Length = 92
Score = 60.5 bits (145), Expect = 2e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPL 510
CC Y+ PLP ++E+F+TS C VV IT KNR +CA+P + WV++ ++ L
Sbjct: 36 CCQDYIRHPLPSRLVKEFFWTSKSCRKPGVVLITVKNRDICADPRQVWVKKLLHKL 91
>gi|6755418|ref|NP_035460.1| small chemokine (C-C motif) ligand 11
[Mus musculus]
Length = 97
Score = 53.5 bits (127), Expect = 2e-07
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYF-YTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CCF S+ +P L+ Y T+++C++ A+VF TR +++CA+P+KKWV++ L+
Sbjct: 32 CCFIMTSKKIPNTLLKSYKRITNNRCTLKAIVFKTRLGKEICADPKKKWVQDATKHLD 89
>gi|8394248|ref|NP_058656.1| chemokine (C-C motif) ligand 20 [Mus
musculus]
Length = 97
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYF--YTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLEL 516
CC SY+ PLP + + C + A++F T+K + VCA+P++ WV+ +N L L
Sbjct: 33 CCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKRKSVCADPKQNWVKRAVNLLSL 92
>gi|9625035|ref|NP_062523.1| chemokine (C-C motif) ligand 24 [Mus
musculus]
Length = 119
Score = 49.3 bits (116), Expect = 4e-06
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEY-FYTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLELS 519
CC S++S+ +P + Y S C A V+FIT+K ++C +P+ WV+ +I L+
Sbjct: 33 CCTSFISKKIPENRVVSYQLANGSICPKAGVIFITKKGHKICTDPKLLWVQRHIQKLDAK 92
Query: 520 *DGGSLEPELVQT 558
+ S + V+T
Sbjct: 93 KNQPSKGAKAVRT 105
>gi|6755420|ref|NP_035461.1| chemokine (C-C motif) ligand 12 [Mus
musculus]
Length = 95
Score = 47.8 bits (112), Expect = 1e-05
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYF-YTSSKCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CC++ + + + L+ Y TSS+C AV+F T ++++CA+P++KWV+ IN L+
Sbjct: 33 CCYNVVKQKIHVRKLKSYRRITSSQCPREAVIFRTILDKEICADPKEKWVKNSINHLD 90
>gi|10946818|ref|NP_067418.1| chemokine (C-C motif) ligand 8 [Mus
musculus]
Length = 97
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 CCFSYLSRPLPRAHLQEYFYTSS-KCSMAAVVFITRKNRQVCANPEKKWVREYINPLE 513
CCF L +P L+ Y ++ +C M AVVF T++ +C +P +KWV EY+ L+
Sbjct: 32 CCFHVLKLKIPLRVLKSYERINNIQCPMEAVVFQTKQGMSLCVDPTQKWVSEYMEILD 89
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 102
effective length of database: 9,851,042
effective search space used: 2689334466
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)