Search to RefSeq (Human) database
Query= 20050322S-025939 (20050322S-025939) 20050322S-025939
(569 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 197 4e-51
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 191 2e-49
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 191 2e-49
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 115 2e-26
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 92 2e-19
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 85 3e-17
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 82 3e-16
Alignment gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3... 68 4e-12
Alignment gi|11024712|ref|NP_060003.1| myosin, heavy polypeptide 4, skelet... 45 3e-05
Alignment gi|7669506|ref|NP_005954.2| myosin, heavy polypeptide 1, skeleta... 45 4e-05
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDEL---- 237
E + +K+ +++ D E A +RAE +E + EE+ + + + L K L ED+
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTL----KALMAAEDKYSQKE 218
Query: 238 DLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 414
D Y E +K + L+ + +A ++ V L + I +DE + + + L+ A
Sbjct: 219 DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 191 bits (486), Expect = 2e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/122 (26%), Positives = 58/122 (47%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +L+ + E + +RAE AES + EE+ + + + L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAAD 429
E +K +E L+ + +A ++ VA L + I +E L++A E Q D
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTID-------DLEETLASAKEENVEIHQTLD 275
Query: 430 AT 435
T
Sbjct: 276 QT 277
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 191 bits (486), Expect = 2e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 42.0 bits (97), Expect = 3e-04
Identities = 31/115 (26%), Positives = 55/115 (47%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +L+ + E + +RAE AES EE+ K V L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 414
E +K +E L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNA 277
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 115 bits (288), Expect = 2e-26
Identities = 73/167 (43%), Positives = 98/167 (58%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ EDEL
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQL--------------EDEL--- 44
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
AA+ ++++ +DE R+QERL+TAL LEEAE+AA
Sbjct: 45 -------------------------AAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 126
Score = 43.5 bits (101), Expect = 1e-04
Identities = 30/115 (26%), Positives = 54/115 (46%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +++ D E +RAE AES EE+ K V L L + + + D Y
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 414
E +K + L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHA 236
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 92.4 bits (228), Expect = 2e-19
Identities = 51/125 (40%), Positives = 79/125 (63%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 424 ADATQRR 444
+ R+
Sbjct: 126 YEEVARK 132
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/103 (25%), Positives = 52/103 (50%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L + ++ D Y
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 378
E +K + L+ + +A ++ VA L + I +++ +++E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 85.1 bits (209), Expect = 3e-17
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +1
Query: 208 KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLS 387
+K++ + + D E + Q +E ++ +VA+LN+RIQL ++E R+QERL+
Sbjct: 12 RKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLA 71
Query: 388 TALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
TAL LEEAE+AAD ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 72 TALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Score = 55.8 bits (133), Expect = 2e-08
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E+ L+++++ E+ELD
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R L +EK QE +L A EEA++
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENR-ALKDEEKMELQEIQLKEAKHIAEEADRK 125
Query: 424 --------------ADATQRRTKVTKTRALYESEKMVIHDKQL-----AEDK-STADDAY 543
+ T+ R ++ ++R E++ + D+ L AE+K S +D Y
Sbjct: 126 YEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185
Query: 544 D 546
+
Sbjct: 186 E 186
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHL-------HKKLKGTE 228
E + +K+ +++ D E +RAE AES + +E+ + + + L L +K E
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 229 DELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLE 408
+E+ + ++ LK+A+ E + + + + L +++ ++E +Q L L +L
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Query: 409 E 411
E
Sbjct: 247 E 247
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 81.6 bits (200), Expect = 3e-16
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +1
Query: 307 SKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEK 486
++GDVA LN+RIQL ++E R+QERL+TAL LEEAE+ AD ++R KV + RA+ + EK
Sbjct: 34 AEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESERGMKVIENRAMKDEEK 93
Query: 487 MVIHDKQLAEDKSTADDAYDHFKEAAR 567
M I + QL E K A+ A +++ AR
Sbjct: 94 MEIQEMQLKEAKHIAEKADRKYEKVAR 120
>gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 209
Score = 68.2 bits (165), Expect = 4e-12
Identities = 37/97 (38%), Positives = 60/97 (61%)
Frame = +1
Query: 211 KLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLST 390
K++ + + D E + Q +E +++ +VA+LN+RIQL ++E +QE L+T
Sbjct: 112 KIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVEEELDHAQEYLAT 171
Query: 391 ALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHD 501
AL LEEAE+AAD ++R KV + RAL + EKM + +
Sbjct: 172 ALQKLEEAEKAADESERGMKVVENRALKDEEKMELQE 208
Score = 45.8 bits (107), Expect = 2e-05
Identities = 29/104 (27%), Positives = 57/104 (54%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
+EA+K K+Q+L+ ++A +RAE + + + + ++ E+ L+++++ E+ELD
Sbjct: 106 IEAVKCKIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVEEELDHA 165
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 378
E L A + LE + A +S+ + + R L +EK QE
Sbjct: 166 QEYLATALQKLEEAEKAADESERGMKVVENR-ALKDEEKMELQE 208
>gi|11024712|ref|NP_060003.1| myosin, heavy polypeptide 4, skeletal
muscle [Homo sapiens]
Length = 1939
Score = 45.4 bits (106), Expect = 3e-05
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 240
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADALADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 421 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
D T K+TK +AL E+ + + D Q+ EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQMEEDK 1020
Score = 31.6 bits (70), Expect = 0.38
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Frame = +1
Query: 58 CPAMEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLH--------- 207
C +E K+K++ LKL +E+ +D E+DK+ EK K+ E+++L
Sbjct: 1049 CMDLERAKRKLEGDLKLAQESTMD----TENDKQQLNEKLKKKEFEMSNLQGKIEDEQAL 1104
Query: 208 -----KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
KK+K EL E L++ E S KA + D++ R
Sbjct: 1105 AMQLQKKIK----ELQARIEELEEEIEAERASRAKAEKQRSDLS--------------RE 1146
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTR-ALYESEKMVIHDKQLAEDKSTA 531
E +S E E+A AT + ++ K R A ++ + + + L + + A
Sbjct: 1147 LEEIS------ERLEEAGGATSAQIELNKKREAEFQKMRRDLEESTLQHEATAA 1194
>gi|7669506|ref|NP_005954.2| myosin, heavy polypeptide 1, skeletal
muscle, adult [Homo sapiens]
Length = 1939
Score = 44.7 bits (104), Expect = 4e-05
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 240
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 421 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
D T K+TK +AL E+ + + D Q EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1020
Score = 37.0 bits (84), Expect = 0.009
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
+E K+K++ LKL +E+A+D E+DK+ +EK K+ E++ L K+ EDE L
Sbjct: 1052 LERAKRKLEGDLKLAQESAMD----IENDKQQLDEKLKKKEFEMSGLQSKI---EDEQAL 1104
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 411
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1105 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1153
Query: 412 AEQAADATQRRTKVTKTRALYESEKM 489
E+A AT + ++ K R E +KM
Sbjct: 1154 LEEAGGATSAQIEMNKKREA-EFQKM 1178
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.310 0.125 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 96
effective length of database: 11,874,681
effective search space used: 1104345333
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-025939 (20050322S-025939) 20050322S-025939
(569 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 197 4e-51
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 193 7e-50
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 190 6e-49
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 90 1e-18
Alignment gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptid... 44 6e-05
Alignment gi|18859641|ref|NP_542766.1| myosin, heavy polypeptide 7, cardia... 44 6e-05
Alignment gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptid... 44 8e-05
Alignment gi|6681147|ref|NP_031861.1| dynactin 1 [Mus musculus] 44 8e-05
Alignment gi|21489941|ref|NP_659210.1| myosin, heavy polypeptide 2, skelet... 43 1e-04
Alignment gi|6754774|ref|NP_034986.1| myosin, heavy polypeptide 6, cardiac... 42 2e-04
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L + + + D Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRI-QLPQDEKHRSQERLS 387
E +K + L+ + +A ++ V L + I L + H +E LS
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLS 269
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 193 bits (490), Expect = 7e-50
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/115 (26%), Positives = 55/115 (47%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +L+ + E + +RAE AES EE+ K V L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 414
E +K +E L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNA 277
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 190 bits (482), Expect = 6e-49
Identities = 101/167 (60%), Positives = 131/167 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHL-------HKKLKGTE 228
E + +K+ +++ D E +RAE AES + +E+ + + + L L +K E
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 229 DELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLE 408
+E+ + ++ LK+A+ E + + + + L +++ ++E +Q L L +L
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
Query: 409 E 411
E
Sbjct: 283 E 283
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 89.7 bits (221), Expect = 1e-18
Identities = 50/125 (40%), Positives = 78/125 (62%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GD AALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QE+L+TAL NLEEAE+AAD ++R KV + RA+ + EKM I + QL E K D+A +
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 49.7 bits (117), Expect = 1e-06
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ ++A DRA+ + + E+ ++ + L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R + +E++ L+EA+
Sbjct: 66 AQEQLATALQNLEEAEKAADESERGMKVIENRAM-------KDEEKMEILEMQLKEAKHI 118
Query: 424 ADATQRR-TKVTKTRALYESE 483
D R+ +V + + E E
Sbjct: 119 TDEADRKYEEVARKLVILEGE 139
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/103 (23%), Positives = 52/103 (50%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 249
E + +K+ +L+ + + A +RAE +E EE+ K V L L + ++ D Y
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 378
E +K + L+ + +A ++ V+ L + I +++ +++E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
>gi|51828472|ref|XP_126119.3| PREDICTED: myosin, heavy polypeptide 4,
skeletal muscle [Mus musculus]
Length = 1967
Score = 43.9 bits (102), Expect = 6e-05
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 240
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 905 LEEKMVALMQEK-NDLQLQVQAEADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEE 963
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
+ +E L + LE + S+ K D+ L + + EKH ++ ++ E+
Sbjct: 964 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVKNL------TEE 1013
Query: 421 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
A + K+TK +AL E+ + + D Q EDK
Sbjct: 1014 MAGLDENIAKLTKEKKALQEAHQQTLDDLQAEEDK 1048
Score = 36.6 bits (83), Expect = 0.010
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E+++L K+ EDE L
Sbjct: 1080 LERAKRKLEGDLKLAQESTMD----IENDKQQLDEKLKKKEFEMSNLQSKI---EDEQAL 1132
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 411
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1133 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1181
Query: 412 AEQAADATQRRTKVTKTRALYESEKM 489
E+A AT + ++ K R E +KM
Sbjct: 1182 LEEAGGATSAQIEMNKKREA-EFQKM 1206
Score = 26.9 bits (58), Expect = 8.2
Identities = 26/104 (25%), Positives = 49/104 (47%)
Frame = +1
Query: 223 TEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPN 402
TE E+ E+ + A+E L S K + + + AL Q EK+ Q ++
Sbjct: 877 TEKEMANMKEDFEKAKEDLAKSEAKRKELEEKMVALMQ-------EKNDLQLQVQA---- 925
Query: 403 LEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 534
EA+ ADA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 926 --EADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEEINAE 967
>gi|18859641|ref|NP_542766.1| myosin, heavy polypeptide 7, cardiac
muscle, beta [Mus musculus]
Length = 1935
Score = 43.9 bits (102), Expect = 6e-05
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLKGTEDELDLYSE 252
+++KM L L ++N + QAE D A AEE+C Q+ + L K+K + L+ E
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Query: 253 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 432
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 985
Query: 433 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
+ K+TK +AL E+ + + D Q EDK
Sbjct: 986 DEIIVKLTKEKKALQEAHQQALDDLQAEEDK 1016
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Frame = +1
Query: 106 DKENAIDRA----EQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENLKDAQE 273
DK N + +A EQ D + + E+ K+V +L +KL+G +L L E++ D +
Sbjct: 1015 DKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEG---DLKLTQESIMDLEN 1071
Query: 274 *LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQ-RRTK 450
+ + ++ ALN RI+ Q + Q++L +EE E+ +A + R K
Sbjct: 1072 DKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAK 1131
Query: 451 VTKTRA 468
V K R+
Sbjct: 1132 VEKLRS 1137
Score = 33.9 bits (76), Expect = 0.067
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 258
+K+M +K + D E++E+ +K EEK + +E L +++ +D NL
Sbjct: 846 EKEMATMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 898
Query: 259 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 417
DA+E + + V + +R++ ++ +K + ++ S ++++ E
Sbjct: 899 ADAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 958
Query: 418 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 543
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 959 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIVKLTKEKKALQEAH 1003
Score = 30.8 bits (68), Expect = 0.57
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVGEELTHLHKKLKGTEDE 234
ME K+ + + ++D ++ ++ KK E ++ +L+H ++ + +
Sbjct: 1583 MEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 235 LDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 414
+ LKD Q L+ + D K ++A + +R L Q E + + + + A
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLA 1702
Query: 415 EQAADATQRRTKV---TKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEA 561
EQ T R ++ T + + +KM D L++ ++ ++A + A
Sbjct: 1703 EQELIETSERVQLLHSQNTSLINQKKKM---DADLSQLQTEVEEAVQECRNA 1751
>gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptide 1,
skeletal muscle, adult [Mus musculus]
Length = 1942
Score = 43.5 bits (101), Expect = 8e-05
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 240
+++KM L +K N + Q+E+D A AEE+C Q+ + L K+K EDE +
Sbjct: 880 LEEKMVALMQEK-NDLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 938
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 939 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 990
Query: 421 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
D T K+TK +AL E+ + + D Q EDK
Sbjct: 991 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1023
Score = 37.0 bits (84), Expect = 0.008
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E+++L K+ EDE L
Sbjct: 1055 LERAKRKLEGDLKLAQESTMD----VENDKQQLDEKLKKKEFEMSNLQSKI---EDEQAL 1107
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 411
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1108 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1156
Query: 412 AEQAADATQRRTKVTKTRALYESEKM 489
E+A AT + ++ K R E +KM
Sbjct: 1157 LEEAGGATSAQIEMNKKREA-EFQKM 1181
Score = 27.7 bits (60), Expect = 4.8
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 256 LKDAQE*LELSYMKASDSKGD---VAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
LK A+ E++ MK K A +R +L + QE+ L EA+ A
Sbjct: 847 LKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKMVALMQEKNDLQLQVQSEADSLA 906
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 534
DA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 907 DAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAE 942
>gi|6681147|ref|NP_031861.1| dynactin 1 [Mus musculus]
Length = 1281
Score = 43.5 bits (101), Expect = 8e-05
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Frame = +1
Query: 88 MQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKL--KGTE--------DEL 237
++M LDKE A +RAE + + +A +E+ ++ +L L ++ KG++ +L
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQL 363
Query: 238 DLYSENLKDAQE*LELSYMKASDSKGDV------AALNQRIQLPQDEKHRSQERLSTALP 399
+ + LKDA + + + +S+ + V NQ +++ + ++ R QE LS A
Sbjct: 364 EEQNARLKDAL--VRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAES 421
Query: 400 NLEEAEQAADA---TQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
++E ++ DA + ++ R L EK V ++ D ++ D +E AR
Sbjct: 422 TIDELKEQVDAALGAEEMVEMLTDRNLNLEEK-VRELRETVGDLEAMNEMNDXLQENAR 479
>gi|21489941|ref|NP_659210.1| myosin, heavy polypeptide 2, skeletal
muscle, adult [Mus musculus]
Length = 1598
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Frame = +1
Query: 70 EAIKKKMQ--MLKLDKE-NAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GT 225
EA +K+++ M+ L KE N + QAE++ A AEE+C Q+ + L K+K
Sbjct: 874 EAKRKELEEKMVSLLKEKNDLQLQVQAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERA 933
Query: 226 EDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNL 405
EDE ++ +E L + LE + S+ K D+ L + + EKH ++ ++ NL
Sbjct: 934 EDEEEINAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NL 985
Query: 406 EEAEQAADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
E D T K+TK +AL E+ + + D Q EDK
Sbjct: 986 TEEMAGLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1023
Score = 26.9 bits (58), Expect = 8.2
Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Frame = +1
Query: 292 MKASDSKGDVAALNQRIQLPQDEKHRSQ---------------ERLSTALPNLEEAEQAA 426
+K+++++ ++A + + Q +D+ +S+ E+ L EAE A
Sbjct: 847 LKSAETEKEMATMKEEFQKTKDDLAKSEAKRKELEEKMVSLLKEKNDLQLQVQAEAEGLA 906
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 534
DA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 907 DAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAE 942
>gi|6754774|ref|NP_034986.1| myosin, heavy polypeptide 6, cardiac
muscle, alpha [Mus musculus]
Length = 1938
Score = 42.4 bits (98), Expect = 2e-04
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDK-KAAEEKCKQVGEELTHLHKKLKGTEDELDLYSE 252
+++KM L L ++N + QAE D AEE+C Q+ + L K+K + L+ E
Sbjct: 875 LEEKMVSL-LQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 933
Query: 253 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 432
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 934 MNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 987
Query: 433 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
+ K+TK +AL E+ + + D Q EDK
Sbjct: 988 DEIIAKLTKEKKALQEAHQQALDDLQAEEDK 1018
Score = 34.3 bits (77), Expect = 0.051
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Frame = +1
Query: 79 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 258
+K+M +K + D E++E+ +K EEK + +E L +++ +D NL
Sbjct: 848 EKEMANMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 900
Query: 259 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 417
DA+E + + V + +R++ ++ +K + ++ S ++++ E
Sbjct: 901 NDAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLE 960
Query: 418 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 543
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 961 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAH 1005
Score = 30.4 bits (67), Expect = 0.74
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +1
Query: 67 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
+E K+K++ LKL +E+ +D E+DK EEK K+ +++ + K+ EDE L
Sbjct: 1050 LERAKRKLEGDLKLTQESIMD----LENDKLQLEEKLKKKEFDISQQNSKI---EDEQAL 1102
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNL-EEAEQ 420
+ K +E + + + + ++ A +R + EK RS LS L + E E+
Sbjct: 1103 ALQLQKKLKE----NQARIEELEEELEA--ERTARAKVEKLRSD--LSRELEEISERLEE 1154
Query: 421 AADATQRRTKVTKTRALYESEKM 489
A AT + ++ K R E +KM
Sbjct: 1155 AGGATSVQIEMNKKREA-EFQKM 1176
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.310 0.125 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 94
effective length of database: 10,061,450
effective search space used: 955837750
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)