Search to RefSeq (Human) database
Query= 20050322S-027028 (20050322S-027028) 20050322S-027028
(365 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,818 sequences; 14,641,209 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 59 8e-10
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 38 0.001
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 36 0.004
Alignment gi|40353204|ref|NP_066022.1| spectrin, beta, non-erythrocytic 4 ... 33 0.034
Alignment gi|13435161|ref|NP_079489.1| spectrin, beta, non-erythrocytic 4 ... 33 0.034
Alignment gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3... 31 0.13
Alignment gi|40068487|ref|NP_954572.1| von Willebrand factor A domain-rela... 30 0.29
Alignment gi|40068485|ref|NP_073745.2| von Willebrand factor A domain-rela... 30 0.29
Alignment gi|38327612|ref|NP_932159.1| PDZ and LIM domain 2 isoform 3 [Hom... 29 0.49
Alignment gi|51492954|ref|XP_499082.1| PREDICTED: hypothetical protein XP_... 29 0.49
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 58.5 bits (140), Expect = 8e-10
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGDV I LV
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAG+ ++EAV+RKI LQ E++G+R E+AE +V + I LV
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 36.2 bits (82), Expect = 0.004
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = +2
Query: 212 GLQWELDGDRERWEKAEGDVPTFIGCILLVVED 310
GLQ ELDG RE EKAEGDV T I LV E+
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEE 51
>gi|40353204|ref|NP_066022.1| spectrin, beta, non-erythrocytic 4 [Homo
sapiens]
Length = 2564
Score = 33.1 bits (74), Expect = 0.034
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 135 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 16
RP RR R G GG S R S + APAP P PT
Sbjct: 2377 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2416
>gi|13435161|ref|NP_079489.1| spectrin, beta, non-erythrocytic 4 [Homo
sapiens]
Length = 2559
Score = 33.1 bits (74), Expect = 0.034
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 135 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 16
RP RR R G GG S R S + APAP P PT
Sbjct: 2372 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2411
>gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 0.13
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
+A + ++EAV+ KI LQ E++G+R+ E+AE +V + I LV
Sbjct: 100 VAEITTIEAVKCKIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVE 159
Query: 305 ED 310
E+
Sbjct: 160 EE 161
>gi|40068487|ref|NP_954572.1| von Willebrand factor A domain-related
protein isoform 2 [Homo sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 0.29
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 153 TASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 13
T + L P A T AA GR + L S K+C+ P P P P P
Sbjct: 176 TTLQGLAPGTAYLVTVTAAFRSGRESAL-SAKACTPDGPRPRPRPVP 221
>gi|40068485|ref|NP_073745.2| von Willebrand factor A domain-related
protein isoform 1 [Homo sapiens]
Length = 445
Score = 30.0 bits (66), Expect = 0.29
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 153 TASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 13
T + L P A T AA GR + L S K+C+ P P P P P
Sbjct: 388 TTLQGLAPGTAYLVTVTAAFRSGRESAL-SAKACTPDGPRPRPRPVP 433
>gi|38327612|ref|NP_932159.1| PDZ and LIM domain 2 isoform 3 [Homo
sapiens]
Length = 278
Score = 29.3 bits (64), Expect = 0.49
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 135 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPG 10
R + + R Q A + R RLC+ + + PA P+PT G
Sbjct: 237 RQSSSFRLLQEALEAEERGTRLCASRRAGTATPAATPVPTVG 278
>gi|51492954|ref|XP_499082.1| PREDICTED: hypothetical protein
XP_499082 [Homo sapiens]
Length = 540
Score = 29.3 bits (64), Expect = 0.49
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 141 ELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPG 10
+L+ ++RR+ A G +A SC+ PA P P PG
Sbjct: 57 QLQAHLSRRKGGPALGGAREAAEASSCRGAPVSPPAAGPNPRPG 100
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Mar 18, 2005 8:02 PM
Number of letters in database: 14,641,209
Number of sequences in database: 28,818
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,641,209
effective HSP length: 97
effective length of database: 11,845,863
effective search space used: 284300712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-027028 (20050322S-027028) 20050322S-027028
(365 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,301 sequences; 12,533,744 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 56 4e-09
Alignment gi|30794220|ref|NP_115999.1| spectrin beta 4 [Mus musculus] 33 0.029
Alignment gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide [... 32 0.083
Alignment gi|48928022|ref|NP_666317.2| armadillo repeat containing 5 [Mus ... 29 0.54
Alignment gi|19387842|ref|NP_076395.1| ankyrin repeat and SOCS box-contain... 28 1.2
Alignment gi|40804757|ref|NP_665823.2| Ran-binding protein 10 [Mus musculus] 28 1.2
Alignment gi|7305475|ref|NP_038690.1| sema domain, transmembrane domain (T... 28 1.2
Alignment gi|41235781|ref|NP_958762.1| Similar to hypothetical protein FLJ... 28 1.2
Alignment gi|21553305|ref|NP_083686.1| BCL2-like 12 (proline rich) [Mus mu... 28 1.2
Alignment gi|58036483|ref|NP_001009929.1| brain-selective kinase 2 isoform... 27 1.6
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 55.8 bits (133), Expect = 4e-09
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGD I L+
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
>gi|30794220|ref|NP_115999.1| spectrin beta 4 [Mus musculus]
Length = 2561
Score = 33.1 bits (74), Expect = 0.029
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 135 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 16
RP RR R G GG S R S + APAP P PT
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2413
>gi|31982705|ref|NP_064368.2| transglutaminase 1, K polypeptide [Mus
musculus]
Length = 815
Score = 31.6 bits (70), Expect = 0.083
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = -3
Query: 168 WILRLTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSRAP---APEP 25
W T S E P R R+ GGRS AR C C SC +R PEP
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEP 68
>gi|48928022|ref|NP_666317.2| armadillo repeat containing 5 [Mus
musculus]
Length = 926
Score = 28.9 bits (63), Expect = 0.54
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = -3
Query: 165 ILRLTASRELRPAMARRRTQRAAG-------SGGRSARLCSCKSCSSRAPAPEPLPTP 13
I R A LRP +A R AAG SG + + S S APA E L TP
Sbjct: 58 IERFRARGGLRPLLALLRRTAAAGPAPSQAASGSAPSSVASAGSTPGHAPAAESLLTP 115
>gi|19387842|ref|NP_076395.1| ankyrin repeat and SOCS box-containing
protein 3 [Mus musculus]
Length = 525
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 349 SRTLNGRAWRCVEVLHDK*YAPNESWHIPFGFLPPLAIAVQ 227
S GR C+E+L Y+P+ + FGF PL +A Q
Sbjct: 286 SAVFGGRE-ECLEMLLQNGYSPDAQMCLVFGFSSPLCMAFQ 325
>gi|40804757|ref|NP_665823.2| Ran-binding protein 10 [Mus musculus]
Length = 648
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 56 LLQEQSRAERPPL-----PAARCVRLRAMAGLNSLEAVR 157
+L+ Q+ ++PPL A+ C+RL A AGL S R
Sbjct: 604 ILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFAR 642
>gi|7305475|ref|NP_038690.1| sema domain, transmembrane domain (TM),
and cytoplasmic domain, (semaphorin) 6B [Mus musculus]
Length = 886
Score = 27.7 bits (60), Expect = 1.2
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -3
Query: 138 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 1
L PA A + Q A G S RLC+ +SC + P PL TP P
Sbjct: 754 LAPARASEQPQVPAEPGPES-RLCAPRSCRASHPGDFPL-TPHASP 797
>gi|41235781|ref|NP_958762.1| Similar to hypothetical protein
FLJ32658 [Mus musculus]
Length = 578
Score = 27.7 bits (60), Expect = 1.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 168 WILRLTASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 1
WI+ L S +L R+ ++ S G S+ L + P PEP P P P
Sbjct: 365 WIMALPPSLDLEIQAIRQ--EQDVASAGLSSPLYGVRQWEEVEPEPEPEPEPEPEP 418
>gi|21553305|ref|NP_083686.1| BCL2-like 12 (proline rich) [Mus
musculus]
Length = 255
Score = 27.7 bits (60), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 132 PAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP-LPTPGGRP 1
PA+ R+ + +AGS R L S + SS P LP PG P
Sbjct: 148 PALHRKLARLSAGSFARLVELFSSRESSSSPNCSSPSLPCPGPPP 192
>gi|58036483|ref|NP_001009929.1| brain-selective kinase 2 isoform
beta [Mus musculus]
Length = 675
Score = 27.3 bits (59), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 120 RRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 1
R R+ A SG ++ L S + +P PLPTP G P
Sbjct: 410 RSRSISGASSGLSTSPLSSPRVTPHPSPRGSPLPTPKGTP 449
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Mar 11, 2005 8:00 PM
Number of letters in database: 12,533,744
Number of sequences in database: 26,301
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,533,744
effective HSP length: 97
effective length of database: 9,982,547
effective search space used: 239581128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)