Search to RefSeq (Human) database
Query= 20050322S-034433 (20050322S-034433) 20050322S-034433
(997 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,829 sequences; 14,643,787 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 233 2e-61
Alignment gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4... 168 5e-42
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 150 2e-36
Alignment gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Hom... 137 9e-33
Alignment gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4... 134 1e-31
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Hom... 130 1e-30
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 117 1e-26
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 105 4e-23
Alignment gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3... 100 2e-21
Alignment gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3... 70 2e-12
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 233 bits (594), Expect = 2e-61
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|51467148|ref|XP_372046.2| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 214
Score = 168 bits (426), Expect = 5e-42
Identities = 104/196 (53%), Positives = 111/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 143 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 322
GLQRELDG+RE REKAEGDVA LNRRIQLVEEELDRAQER R
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 323 GMKVIENRAMKDEEKMEIQER--------AEVSELKCGDLEEELKNVTNNLXXXXX---- 466
GMKVIENRAMKDEEKMEIQE AE ++ K + +L + L
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVILEGELERAEERAEM 138
Query: 467 -XXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENV 643
SDK+K KLEKTIDDLEEKLAQAKEENV
Sbjct: 139 PASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENV 198
Query: 644 GLHQTLDQTLNELNCI 691
GLHQTLDQTLNELNCI
Sbjct: 199 GLHQTLDQTLNELNCI 214
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 150 bits (378), Expect = 2e-36
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>gi|47519616|ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo
sapiens]
Length = 284
Score = 137 bits (346), Expect = 9e-33
Identities = 91/239 (38%), Positives = 108/239 (45%), Gaps = 36/239 (15%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E + LEEEL+ + L
Sbjct: 164 EVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
+KLK KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>gi|51463929|ref|XP_208313.4| PREDICTED: similar to tropomyosin 4
[Homo sapiens]
Length = 158
Score = 134 bits (336), Expect = 1e-31
Identities = 82/158 (51%), Positives = 82/158 (51%), Gaps = 36/158 (22%)
Frame = +2
Query: 326 MKVIENRAMKDEEKMEIQE------------------------------------RAEVS 397
MKVIENRAMKDEEKMEIQE R EVS
Sbjct: 1 MKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVS 60
Query: 398 ELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXX 577
ELKCGDLEEELKNVTNNL DKLK
Sbjct: 61 ELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTV 120
Query: 578 XKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 121 AKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 158
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo
sapiens]
Length = 284
Score = 130 bits (327), Expect = 1e-30
Identities = 85/241 (35%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 688
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 689 I 691
+
Sbjct: 284 L 284
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 117 bits (294), Expect = 1e-26
Identities = 77/242 (31%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Frame = +2
Query: 74 LEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 253
+EA+K+K+ + E ER ++ E ++AA+ ++++ E+ELDRA
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 254 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------------ 379
QER RGMKVIENRA+KDEEKME+Q
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 121
Query: 380 ------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 505
ERAE++E KC +LEEELKNVTNNL
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 506 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
+DKLK KLEKTIDDLE++L K + + + LD LN++
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 241
Query: 686 CI 691
I
Sbjct: 242 SI 243
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 105 bits (263), Expect = 4e-23
Identities = 76/241 (31%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE+SE + LEE+L+ + L
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDR 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
SDKLK KLEK+IDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 L 682
+
Sbjct: 281 M 281
>gi|51460979|ref|XP_496620.1| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 209
Score = 100 bits (248), Expect = 2e-21
Identities = 54/109 (49%), Positives = 67/109 (61%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
+A + ++EAVK KI LQRE++GER+ RE+AE +VA+LNRRIQLVE
Sbjct: 100 VAEITTIEAVKCKIQVLQQQADDAEERAEHLQREVEGERQAREEAEAEVASLNRRIQLVE 159
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE 382
EELD AQE RGMKV+ENRA+KDEEKME+QE
Sbjct: 160 EELDHAQEYLATALQKLEEAEKAADESERGMKVVENRALKDEEKMELQE 208
>gi|51475813|ref|XP_167254.4| PREDICTED: similar to tropomyosin 3
[Homo sapiens]
Length = 206
Score = 70.5 bits (171), Expect = 2e-12
Identities = 64/230 (27%), Positives = 89/230 (38%), Gaps = 20/230 (8%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++E VK KI LQ++ D ER E+ + E
Sbjct: 1 MAGIATMEEVKCKIQV--------------LQQQADDAEERAERLQ------------FE 34
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMK------DEEKMEI------- 376
EELD AQER R MK I+ + K D + E+
Sbjct: 35 EELDHAQERLTTALQKLEEEEKAADESERDMKEIQLKEAKHIAEEADRKYEEVPRKLVII 94
Query: 377 -------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKL 535
+ERAE++E +C + +E+++ + NL +DKL
Sbjct: 95 EGDLECTEERAELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQKEDIYEEEIKILTDKL 154
Query: 536 KXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
K KLEKT DDLE KL KEEN+ + L QTL +LN
Sbjct: 155 KEAETRAEFTERLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQTLLDLN 204
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 1, 2005 10:30 AM
Number of letters in database: 14,643,787
Number of sequences in database: 28,829
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,643,787
effective HSP length: 102
effective length of database: 11,703,229
effective search space used: 2680039441
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-034433 (20050322S-034433) 20050322S-034433
(997 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,295 sequences; 12,531,167 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus] 228 6e-60
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 148 4e-36
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 130 1e-30
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 120 2e-27
Alignment gi|29243994|ref|NP_808284.1| hypothetical protein 4930562D19 [Mu... 34 0.12
Alignment gi|22218336|ref|NP_032935.1| periplakin [Mus musculus] 32 0.46
Alignment gi|51769438|ref|XP_489504.1| similar to periplakin [Mus musculus] 32 0.46
Alignment gi|46402207|ref|NP_997111.1| testis specific 10 [Mus musculus] 31 1.0
Alignment gi|6677759|ref|NP_033097.1| Rho-associated coiled-coil forming k... 31 1.3
Alignment gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptid... 31 1.3
>gi|47894398|ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 228 bits (580), Expect = 6e-60
Identities = 136/248 (54%), Positives = 139/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEI------------- 376
EELDRAQE+ RGMKVIENRAMKDEEKMEI
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 377 -----------------------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
+ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 148 bits (374), Expect = 4e-36
Identities = 96/242 (39%), Positives = 114/242 (47%), Gaps = 36/242 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE+SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL E
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE 280
Query: 680 LN 685
LN
Sbjct: 281 LN 282
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 130 bits (328), Expect = 1e-30
Identities = 85/241 (35%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 688
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 689 I 691
+
Sbjct: 284 L 284
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 120 bits (300), Expect = 2e-27
Identities = 79/242 (32%), Positives = 108/242 (44%), Gaps = 36/242 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L +++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLD 280
Query: 680 LN 685
LN
Sbjct: 281 LN 282
>gi|29243994|ref|NP_808284.1| hypothetical protein 4930562D19 [Mus
musculus]
Length = 616
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Frame = +2
Query: 152 RELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMK 331
++L+ E ERR AE V L ++QL+ LD A ++ R +
Sbjct: 284 QQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGASQQIRWASTELDKEKARVDSMVRHQE 343
Query: 332 VIENRAMK--------DEEKMEIQERAEVSELKCGDLEEELKNVTNN 448
++ + D+E+ E++ + +E + +LEE+L+++ ++
Sbjct: 344 SLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRSELEEQLQSLQSD 390
>gi|22218336|ref|NP_032935.1| periplakin [Mus musculus]
Length = 1755
Score = 32.3 bits (72), Expect = 0.46
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Frame = +2
Query: 41 VRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELDGERERREKAEGDVAAL 211
+R A NS++A R+I L+R EL+ ER+ R AE +V L
Sbjct: 1363 LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRL 1422
Query: 212 NRRIQLVEEE-----------------LDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIE 340
+R+ +E+E D Q R G
Sbjct: 1423 QQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPL 1482
Query: 341 NRAMKDEEKMEIQERAEVSE---LKCGDLEEELKNVTNNL 451
R + EK EI+E+ SE ++ GD E+E++ + +L
Sbjct: 1483 RRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSL 1522
>gi|51769438|ref|XP_489504.1| similar to periplakin [Mus musculus]
Length = 1527
Score = 32.3 bits (72), Expect = 0.46
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Frame = +2
Query: 41 VRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELDGERERREKAEGDVAAL 211
+R A NS++A R+I L+R EL+ ER+ R AE +V L
Sbjct: 1135 LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRL 1194
Query: 212 NRRIQLVEEE-----------------LDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIE 340
+R+ +E+E D Q R G
Sbjct: 1195 QQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPL 1254
Query: 341 NRAMKDEEKMEIQERAEVSE---LKCGDLEEELKNVTNNL 451
R + EK EI+E+ SE ++ GD E+E++ + +L
Sbjct: 1255 RRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSL 1294
>gi|46402207|ref|NP_997111.1| testis specific 10 [Mus musculus]
Length = 697
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 599 DDLEEKLAQAKEENVGLHQTLDQTLNELNCI*PKQK 706
D+L+E+ A+ K+EN L + L+ T NEL+ I KQK
Sbjct: 355 DNLQEQFAKVKQENQALSKKLNDTHNELSDI--KQK 388
>gi|6677759|ref|NP_033097.1| Rho-associated coiled-coil forming kinase
1 [Mus musculus]
Length = 1354
Score = 30.8 bits (68), Expect = 1.3
Identities = 22/102 (21%), Positives = 47/102 (46%)
Frame = +2
Query: 146 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 325
++++L ERE REKAE V ++ +++ +L ++Q++
Sbjct: 716 MEKKLKEEREAREKAENRVVETEKQCSMLDVDLKQSQQKLEHLTENKERMEDEVKNLALQ 775
Query: 326 MKVIENRAMKDEEKMEIQERAEVSELKCGDLEEELKNVTNNL 451
++ N+ + + +++ Q E LK LE+++K N L
Sbjct: 776 LEQESNKRLLLQNELKTQ-AFEADNLK--GLEKQMKQEINTL 814
>gi|38091413|ref|XP_354615.1| PREDICTED: myosin, heavy polypeptide 1,
skeletal muscle, adult [Mus musculus]
Length = 1942
Score = 30.8 bits (68), Expect = 1.3
Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 36/205 (17%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVA-ALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 325
++E+ +E EKA+ ++A A +R +L E+ + QE+ R
Sbjct: 853 EKEMANMKEEFEKAKENLAKAEAKRKELEEKMVALMQEKNDLQLQVQSEADSLADAEERC 912
Query: 326 MKVIENRAMKDEEKMEIQERAEVSEL--------------KCGDL--------------- 418
++I+ + + + E+ ERAE E +C +L
Sbjct: 913 DQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVE 972
Query: 419 ------EEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
E ++KN+T + D L+
Sbjct: 973 KEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKI 1032
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQ 655
KLE+ +DDLE L Q K+ + L +
Sbjct: 1033 KLEQQVDDLEGSLEQEKKIRMDLER 1057
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 1, 2005 10:30 AM
Number of letters in database: 12,531,167
Number of sequences in database: 26,295
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,531,167
effective HSP length: 101
effective length of database: 9,875,372
effective search space used: 2271335560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)