Search to RefSeq (Human) database
Query= 20050322S-039735 (20050322S-039735) 20050322S-039735
(952 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
28,829 sequences; 14,643,787 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|48976063|ref|NP_705839.2| cytochrome b, ascorbate dependent 3... 213 4e-61
Alignment gi|19923603|ref|NP_079119.2| cytochrome b reductase 1 [Homo sapi... 108 2e-26
Alignment gi|27597088|ref|NP_001906.2| cytochrome b-561 [Homo sapiens] 75 5e-16
Alignment gi|32698982|ref|NP_872386.1| cytochrome b-561 domain containing ... 47 2e-05
Alignment gi|4507913|ref|NP_003922.1| WAS protein family, member 1 [Homo s... 34 0.14
Alignment gi|45827771|ref|NP_055144.3| autoantigen RCD8 [Homo sapiens] 33 0.23
Alignment gi|33438582|ref|NP_005471.2| trophinin associated protein (tasti... 33 0.30
Alignment gi|50659086|ref|NP_055132.2| trans-prenyltransferase [Homo sapiens] 33 0.39
Alignment gi|51464942|ref|XP_291144.6| PREDICTED: similar to bA110H4.2 (si... 32 0.67
Alignment gi|16507208|ref|NP_055940.2| capicua homolog [Homo sapiens] 32 0.67
>gi|48976063|ref|NP_705839.2| cytochrome b, ascorbate dependent 3
[Homo sapiens]
Length = 242
Score = 213 bits (541), Expect(2) = 4e-61
Identities = 99/132 (75%), Positives = 106/132 (80%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL VF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
G TTVFLFACQW
Sbjct: 121 GTTTVFLFACQW 132
Score = 40.8 bits (94), Expect(2) = 4e-61
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGA+
Sbjct: 139 FLLPWASMWLRSLLKPIHVFFGAA 162
>gi|19923603|ref|NP_079119.2| cytochrome b reductase 1 [Homo
sapiens]
Length = 286
Score = 108 bits (269), Expect(2) = 2e-26
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF +HN I N+YSLHSW+G+ V + Q
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQ 134
Score = 29.3 bits (64), Expect(2) = 2e-26
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+ L PIHV G
Sbjct: 142 FLLPWAPLSLRAFLMPIHVYSG 163
>gi|27597088|ref|NP_001906.2| cytochrome b-561 [Homo sapiens]
Length = 251
Score = 74.7 bits (182), Expect(2) = 5e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 5e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>gi|32698982|ref|NP_872386.1| cytochrome b-561 domain containing 1
[Homo sapiens]
Length = 229
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +1
Query: 544 GTILTFNWHPVLMVTGMVVLYSAASLAYRLPQS---WVGPKLPWKLGHAAMHLMAFILTV 714
GT L F+WHPV M + + A L + S + K +L H A +A +
Sbjct: 48 GTSL-FSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRL-HWAGQTLAILCAA 105
Query: 715 LGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
LGL + +S ++P+L S HSW+G T+ A Q
Sbjct: 106 LGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQ 141
>gi|4507913|ref|NP_003922.1| WAS protein family, member 1 [Homo
sapiens]
Length = 559
Score = 34.3 bits (77), Expect = 0.14
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 627 PPAPVMG-RAQAALEVGPRSHAPDGLHPDCAGAGGRL*LSQPREDPQPLLPAQLAGHHHR 803
PP P G R + + V +H P GLHP + A G P P ++PA H
Sbjct: 430 PPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRH-- 487
Query: 804 LPLRLPVVLGA 836
P LPV+ A
Sbjct: 488 -PSTLPVISDA 497
>gi|45827771|ref|NP_055144.3| autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 33.5 bits (75), Expect = 0.23
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Frame = +3
Query: 651 AQAALEVGPRSHAPDGLHPD-CAGAGGRL*LSQPREDPQPLLPAQLA-------GHHHRL 806
A AL G S AP+GL PD A A L L PR P P L QL G H
Sbjct: 748 ASEALSRGFGSSAPEGLEPDSMASAASALHLLSPRPRPGPELGPQLGLDGGPGDGDRHNT 807
Query: 807 PLRLPVVL 830
P L L
Sbjct: 808 PSLLEAAL 815
>gi|33438582|ref|NP_005471.2| trophinin associated protein (tastin)
[Homo sapiens]
Length = 778
Score = 33.1 bits (74), Expect = 0.30
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Frame = -1
Query: 283 PPFGLCSGLTQVYGRQLQE-LGDPRQIPPVEPRALPYLKTTTPEPQWDARR--------- 134
PP C ++ LQE L P PP EPR L + PE +R+
Sbjct: 522 PPEAFCRSEPEIPEPSLQEQLEVPEPYPPAEPRPLESCCRSEPEIPESSRQEQLEVPEPC 581
Query: 133 -LASPRPASCHLAPEPQLP 80
A PRP + EP++P
Sbjct: 582 PPAEPRPLESYCRIEPEIP 600
>gi|50659086|ref|NP_055132.2| trans-prenyltransferase [Homo sapiens]
Length = 415
Score = 32.7 bits (73), Expect = 0.39
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = -1
Query: 511 SNRWWR---GCTWSPGRTAPGP 455
++RWWR GC+W P +PGP
Sbjct: 2 ASRWWRWRRGCSWKPAARSPGP 23
>gi|51464942|ref|XP_291144.6| PREDICTED: similar to bA110H4.2 (similar
to membrane protein) [Homo sapiens]
Length = 1607
Score = 32.0 bits (71), Expect = 0.67
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -3
Query: 293 ALLPALRTVLWSDSGIRKTAPGTRGPTADSSGGTKGPSVLKNHHP 159
+L+PA T SD+G+R+T PGT P A + PS L HP
Sbjct: 1251 SLIPAPFTAASSDAGMRRTRPGTSAPAA--AAAAPPPSTL---HP 1290
Score = 30.4 bits (67), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 293 ALLPALRTVLWSDSGIRKTAPGTRGPTA 210
+L+PA T D+G+R+T PGT P A
Sbjct: 981 SLIPATFTAASRDAGMRRTRPGTSAPAA 1008
>gi|16507208|ref|NP_055940.2| capicua homolog [Homo sapiens]
Length = 1608
Score = 32.0 bits (71), Expect = 0.67
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 175 STEGPLVPPEESAVGPRVPGAVFRIPESDQSTVRR 279
ST GPL PP A GP P R D +T RR
Sbjct: 566 STAGPLRPPPPGAGGPATPSKATRFLPMDPATFRR 600
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 1, 2005 10:30 AM
Number of letters in database: 14,643,787
Number of sequences in database: 28,829
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 14,643,787
effective HSP length: 101
effective length of database: 11,732,058
effective search space used: 2522392470
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20050322S-039735 (20050322S-039735) 20050322S-039735
(952 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,295 sequences; 12,531,167 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|41235724|ref|NP_958739.1| cytochrome b, ascorbate dependent 3... 216 2e-61
Alignment gi|51706201|ref|XP_130253.3| cytochrome b reductase 1 [Mus muscu... 107 1e-25
Alignment gi|31542436|ref|NP_031831.2| cytochrome b-561 [Mus musculus] 78 3e-17
Alignment gi|51708360|ref|XP_485295.1| cytochrome b-561 domain containing ... 43 2e-04
Alignment gi|13994209|ref|NP_114083.1| WASP family 1 [Mus musculus] 35 0.052
Alignment gi|33147082|ref|NP_476512.1| HLA-B-associated transcript 3 [Mus ... 34 0.15
Alignment gi|16507202|ref|NP_082158.1| capicua homolog [Mus musculus] 33 0.20
Alignment gi|34147258|ref|NP_899023.1| hypothetical protein 5330438D12 [Mu... 33 0.33
Alignment gi|27369607|ref|NP_766036.1| RIKEN cDNA 4732452J19 [Mus musculus] 32 0.44
Alignment gi|9055226|ref|NP_061232.1| glycoprotein 9 (platelet) [Mus muscu... 32 0.44
>gi|41235724|ref|NP_958739.1| cytochrome b, ascorbate dependent 3
protein [Mus musculus]
Length = 242
Score = 216 bits (550), Expect(2) = 2e-61
Identities = 98/132 (74%), Positives = 108/132 (81%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MA GWFYLS + L SLGSMCIL T YWM+YW GFA DGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL VF HNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTV LFACQW
Sbjct: 121 GITTVVLFACQW 132
Score = 38.5 bits (88), Expect(2) = 2e-61
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGA 913
F PWAS LRSLLKP+HV FGA
Sbjct: 139 FLLPWASQWLRSLLKPLHVFFGA 161
>gi|51706201|ref|XP_130253.3| cytochrome b reductase 1 [Mus
musculus]
Length = 437
Score = 107 bits (266), Expect(2) = 1e-25
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 166 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 225
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF HN +K+P++YSLHSW+G+T + L+ Q
Sbjct: 226 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQ 281
Score = 27.7 bits (60), Expect(2) = 1e-25
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA LR+++ PIHV G
Sbjct: 289 FLLPWAPPSLRAIVMPIHVYSG 310
>gi|31542436|ref|NP_031831.2| cytochrome b-561 [Mus musculus]
Length = 250
Score = 78.2 bits (191), Expect(2) = 3e-17
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ AFI+ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQW 135
Score = 28.1 bits (61), Expect(2) = 3e-17
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSLW 928
F P AS LRS +P H+ FGA+ L+
Sbjct: 142 FLFPGASFSLRSRYRPQHIFFGATIFLF 169
>gi|51708360|ref|XP_485295.1| cytochrome b-561 domain containing 1
[Mus musculus]
Length = 229
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 544 GTILTFNWHPVLMVTGMVVLYSAASLAYRLPQS---WVGPKLPWKLGHAAMHLMAFILTV 714
GT L F+WHPV M + + A L + S + K +L H A MA + V
Sbjct: 48 GTSL-FSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKTRIRL-HWAGQTMAILCAV 105
Query: 715 LGLAGVFNSHNHEKIPNLYSLHSWLGITTV 804
LGL + +S ++ +L S HSW+G T+
Sbjct: 106 LGLGFIISSKIRSEMSHLVSWHSWIGALTL 135
>gi|13994209|ref|NP_114083.1| WASP family 1 [Mus musculus]
Length = 559
Score = 35.4 bits (80), Expect = 0.052
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 627 PPAPVMG-RAQAALEVGPRSHAPDGLHPDCAGAGGRL*LSQPREDPQPLLPAQLAGHHHR 803
PP P G R + + V +H P GLHP + A G P P +LPA H
Sbjct: 430 PPLPPPGIRPSSPVAVAALAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRH-- 487
Query: 804 LPLRLPVVLGA 836
P LPV+ A
Sbjct: 488 -PSTLPVISDA 497
>gi|33147082|ref|NP_476512.1| HLA-B-associated transcript 3 [Mus
musculus]
Length = 1154
Score = 33.9 bits (76), Expect = 0.15
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 241 RQLQELGDPRQIPPVEPRALPYLKTTTPEPQWDARRLASPRPAS 110
R ++ +GDP Q P EP + + T+PEPQ R ASP P +
Sbjct: 960 RYVRRVGDPPQTLPEEPMEVQGAERTSPEPQ---RENASPAPGT 1000
>gi|16507202|ref|NP_082158.1| capicua homolog [Mus musculus]
Length = 1606
Score = 33.5 bits (75), Expect = 0.20
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 175 STEGPLVPPEESAVGPRVPGAVFRIPESDQSTVRR 279
ST PL PP A GP P R P +D +T RR
Sbjct: 565 STAVPLRPPPPGAGGPATPSKATRFPPTDSATFRR 599
>gi|34147258|ref|NP_899023.1| hypothetical protein 5330438D12 [Mus
musculus]
Length = 224
Score = 32.7 bits (73), Expect = 0.33
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Frame = +3
Query: 627 PPAPVMGRAQAALEVGPRSH--APDGLHPDCAGAGGRL*LSQPREDPQPLLPAQLAGHHH 800
P A +G +A E GPR A G+ P G L L PR P P P
Sbjct: 116 PGAARLGSERAG-ERGPRGRGEAEGGVGPPTGGRAACLCLCFPRTPP-PRAPPSGCPRSF 173
Query: 801 RLPLRLPVVLGACGLSAAPGRLCGCAASLNPST-SSLEPH 917
+R PV GACG S P C P T ++ PH
Sbjct: 174 PTLVRGPVRCGACGASVLPPPRCLRYLGALPQTPAARRPH 213
>gi|27369607|ref|NP_766036.1| RIKEN cDNA 4732452J19 [Mus musculus]
Length = 657
Score = 32.3 bits (72), Expect = 0.44
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 247 YGRQLQELGDPRQIPPVEPRALPYLKTTTPEPQWDARRLASPRPASCHLAPEPQLPR 77
Y RQ Q G P+++P T EP ++L +P P + + P PQ PR
Sbjct: 431 YKRQFQWHGRKPGPETGIPQSMPAASHTQLEPSLPDQQLITPNPTASSMLPNPQRPR 487
>gi|9055226|ref|NP_061232.1| glycoprotein 9 (platelet) [Mus
musculus]
Length = 177
Score = 32.3 bits (72), Expect = 0.44
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +1
Query: 499 TIYWMRYWHEGFA*DGTILTFNWHPVLMVT---GMVVLYSAASLAYRLPQSWVGPKLPWK 669
++ ++R W E + + + P L G + Y S ++LP SW P + W
Sbjct: 92 SLTYLRLWLEDHMPEALMHVYCASPDLATRRPLGQLTGYELGSCGWKLPPSWAYPGVWWD 151
Query: 670 LGHAAMHLMAFILTVLGLAGVFNSHNHEK 756
+ A+ ++ IL LAG+ N+ +
Sbjct: 152 VSLVAVAVLGLIL----LAGLLNTFTESR 176
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 1, 2005 10:30 AM
Number of letters in database: 12,531,167
Number of sequences in database: 26,295
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 12,531,167
effective HSP length: 100
effective length of database: 9,901,667
effective search space used: 2138760072
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)