BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000288 (1119 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] 415 e-135 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 319 e-101 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 319 e-101 Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 319 e-101 Alignment gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent... 319 e-101 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 315 2e-99 Alignment gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent... 300 1e-95 Alignment gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr... 277 1e-79 Alignment gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ... 249 8e-76 Alignment gi|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent... 272 4e-73 >ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] Length = 317 Score = 415 bits (1067), Expect(2) = e-135 Identities = 205/260 (78%), Positives = 224/260 (86%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RW+RERQ+VSHL DK+VFITGCDSGFGN LARQLD+RGLRVLA C Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTEQGA+QLR QTSDRL+TV+LDVTKTESIAAAT+WVKE VGDRGLWGLVNNAG FH Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EW+K ET+ TL+VNLIGV EVTLSMLPLV+KAQGRIVNVSSILGR+AFFGAVYS SK Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD+LR ELQHFGVKVS+VEPGYFRT MTD QK SE MKQ+WKE PAHIK+TYGQ Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTDWQKFSEIMKQIWKETPAHIKETYGQ 240 Query: 947 KFFDAYHDVMKQGLSSCSTN 1006 KFFDAYHD+MKQGL SCSTN Sbjct: 241 KFFDAYHDLMKQGLLSCSTN 260 Score = 84.7 bits (208), Expect(2) = e-135 Identities = 38/46 (82%), Positives = 41/46 (89%) Frame = +3 Query: 981 KGCLVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 +G L + LNLVTDCMEHALTSVHPRTRYSAGWDAQFFF+PLSYL Sbjct: 252 QGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFVPLSYL 297 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 319 bits (817), Expect(2) = e-101 Identities = 156/242 (64%), Positives = 188/242 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240 Query: 947 KF 952 KF Sbjct: 241 KF 242 Score = 68.6 bits (166), Expect(2) = e-101 Identities = 28/39 (71%), Positives = 35/39 (89%) Frame = +3 Query: 1002 QTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 Q L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL Sbjct: 259 QDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 319 bits (817), Expect(2) = e-101 Identities = 156/242 (64%), Positives = 188/242 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240 Query: 947 KF 952 KF Sbjct: 241 KF 242 Score = 68.6 bits (166), Expect(2) = e-101 Identities = 28/39 (71%), Positives = 35/39 (89%) Frame = +3 Query: 1002 QTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 Q L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL Sbjct: 259 QDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297 >ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Bos taurus] Length = 317 Score = 319 bits (817), Expect(2) = e-101 Identities = 156/242 (64%), Positives = 188/242 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240 Query: 947 KF 952 KF Sbjct: 241 KF 242 Score = 68.6 bits (166), Expect(2) = e-101 Identities = 28/39 (71%), Positives = 35/39 (89%) Frame = +3 Query: 1002 QTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 Q L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL Sbjct: 259 QDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297 >ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Bos taurus] Length = 317 Score = 319 bits (817), Expect(2) = e-101 Identities = 156/242 (64%), Positives = 188/242 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240 Query: 947 KF 952 KF Sbjct: 241 KF 242 Score = 68.6 bits (166), Expect(2) = e-101 Identities = 28/39 (71%), Positives = 35/39 (89%) Frame = +3 Query: 1002 QTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 Q L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL Sbjct: 259 QDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 315 bits (806), Expect(2) = 2e-99 Identities = 154/240 (64%), Positives = 186/240 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240 Score = 67.0 bits (162), Expect(2) = 2e-99 Identities = 27/37 (72%), Positives = 34/37 (91%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL Sbjct: 261 LSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297 >ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 338 Score = 300 bits (768), Expect(2) = 1e-95 Identities = 151/263 (57%), Positives = 186/263 (70%), Gaps = 21/263 (7%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD++GLRVLAAC Sbjct: 1 MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 L +QGA+QLR QTSDRL+TV+LDVTKTES+AAAT+WVKERVGDRGLWGLVNNAG P+ Sbjct: 61 LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 +WL + ++ L+VNL+GV +VTLS+LPLV+KA+G +VNVSS++GR+A FG YS SK Sbjct: 121 PNQWLTKQDFVKILEVNLLGVIDVTLSLLPLVRKARGHVVNVSSVMGRMAVFGGGYSMSK 180 Query: 767 HGVEAFSDVL---------------------RCELQHFGVKVSIVEPGYFRTGMTDVQKS 883 +GVEAFSD L R EL +FGVKV+++EPGYF T MT + Sbjct: 181 YGVEAFSDSLSSSHLLCMSFDGKHVHVFGIPRRELSYFGVKVAVIEPGYFLTDMTQEEVY 240 Query: 884 SEAMKQVWKEVPAHIKDTYGQKF 952 E ++ W I++ YG F Sbjct: 241 HENLQTSWDHASPEIQELYGDNF 263 Score = 69.3 bits (168), Expect(2) = 1e-95 Identities = 28/40 (70%), Positives = 37/40 (92%) Frame = +3 Query: 999 AQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 A+ L+LVT+CMEHALT+ HPR+RYSAGWDA+F ++P+SYL Sbjct: 279 ARNLSLVTNCMEHALTACHPRSRYSAGWDAKFLYLPMSYL 318 >ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Bos taurus] Length = 313 Score = 277 bits (709), Expect(2) = 1e-79 Identities = 135/236 (57%), Positives = 179/236 (75%) Frame = +2 Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 RW++ +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T++GAQ+L++ TS Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 +L+T+LLDVTKTESI AATQWV+++VG++GLW LVNNAG P EWL E ++ + Sbjct: 72 QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL+G+ EVTL MLP+VKKA+GR+VN+SS GRVA G Y SK GVEAFSD +R EL Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELH 191 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979 +FGVKVSI+EPG FRT + + M+++W+ +P +++YG+++F Y D +K Sbjct: 192 YFGVKVSIIEPGNFRTAILGKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLK 247 Score = 38.5 bits (88), Expect(2) = 1e-79 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = +3 Query: 1017 VTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS 1112 VT+ MEHA+ S PR RY+ G DA+ ++PL+ Sbjct: 260 VTNSMEHAIVSRSPRIRYNPGLDAKLLYLPLA 291 >ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus] Length = 319 Score = 249 bits (635), Expect(2) = 8e-76 Identities = 119/236 (50%), Positives = 168/236 (71%), Gaps = 1/236 (0%) Frame = +2 Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 W +RQ+ ++++ DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+ Sbjct: 16 WNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL TVLLDVT E++ A QWVK +VG++GLWGL+NNAG L +WL E + ++ Sbjct: 76 RLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVE 135 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL G+ VTL+MLPLVKKA+GRI+NVSSI GR+AF G YS SK+ VE F+D LR +++ Sbjct: 136 VNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMK 195 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979 FGV V+ +EPG F+T ++D +K++E +WK + IK YG+ + + + +K Sbjct: 196 AFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLK 251 Score = 54.3 bits (129), Expect(2) = 8e-76 Identities = 23/37 (62%), Positives = 33/37 (89%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LV +CM+HALTS+ P+TRY+AG DA+ F+IPLS++ Sbjct: 261 LSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHM 297 >ref|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 260 Score = 272 bits (695), Expect = 4e-73 Identities = 142/255 (55%), Positives = 175/255 (68%), Gaps = 13/255 (5%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD RGLRVLAAC Sbjct: 1 MWLYLVVLVVLYYLLRWYRERQVVSHLEDKFVFITGCDSGFGNRLARQLDQRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTEQGA+QLR QTSDRL+TV+LDVTKTE++ A T WVKE VGDRGLWGLVNNAG P+ Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTENVTATTNWVKEHVGDRGLWGLVNNAGICTPMA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRV-------AFFG 745 EWL + ++ L VNL+GV +VTLS+L LV+KA+GR+VNVSS+LGRV A+ Sbjct: 121 PNEWLTKQDFVKVLDVNLLGVIDVTLSLLSLVRKARGRVVNVSSVLGRVSLVLQATAYPS 180 Query: 746 AVYSSSKHGVE------AFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVW 907 V+ S+ E A + R EL +FGVKV+++EPGYF T MT + ++ +W Sbjct: 181 TVWRPSQTLSEFDSTYPALQEGPRRELSYFGVKVAMIEPGYFVTNMTQDEGFIGYLQALW 240 Query: 908 KEVPAHIKDTYGQKF 952 +K+ YG+ F Sbjct: 241 NPASPELKELYGENF 255 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,686,811 Number of Sequences: 33508 Number of extensions: 937528 Number of successful extensions: 3960 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3916 length of database: 16,112,626 effective HSP length: 103 effective length of database: 12,661,302 effective search space used: 3405890238 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000288 (1119 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 145 2e-36 Alignment gi|NP_998992.1| carbonyl reductase [Sus scrofa] 51 6e-08 Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 50 8e-08 Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 47 1e-06 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 145 bits (366), Expect = 2e-36 Identities = 86/228 (37%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Frame = +2 Query: 320 VFITGCDSGFGNLLARQLDVRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 493 V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK Sbjct: 85 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 144 Query: 494 IAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSML 673 I+ ++ K GLWGLVNNAG + E T+ ++VN G E+T ++L Sbjct: 145 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 204 Query: 674 PLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGY 850 PL++++ GRIV VSS G + F + Y +SK V D CELQ +GVKVS+++P Sbjct: 205 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 264 Query: 851 FRT-GMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 FRT + +V + E +Q+ +P + YG+ + + + LS Sbjct: 265 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLS 312 >ref|NP_998992.1| carbonyl reductase [Sus scrofa] Length = 244 Score = 50.8 bits (120), Expect = 6e-08 Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 3/199 (1%) Frame = +2 Query: 326 ITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAA 505 +TG G G + L V G RV+A T L Q +E V +D+ E A Sbjct: 12 VTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSL-SQECPGIEPVCVDLGDWE----A 66 Query: 506 TQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVT--LSMLPL 679 T+ VG L LVNNA + K E + + VNL V +V+ ++ + Sbjct: 67 TERALGGVGPVDL--LVNNAAVALMQPFLDTTK-EVFDRSFNVNLRSVFQVSQIVARSMI 123 Query: 680 VKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFR 856 + G IVNVSS++ V + G A YSS+K + + + EL ++V+ V P Sbjct: 124 ERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVL 183 Query: 857 TGMTDVQKSSEAMKQVWKE 913 T M S + + KE Sbjct: 184 TAMGRSVTSDPELARKLKE 202 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 50.4 bits (119), Expect = 8e-08 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 9/147 (6%) Frame = +2 Query: 314 KYVFITGCDSGFGNLLARQL--DVRGLRVLAACLTEQGAQQLRKQTSDRLETVL--LDVT 481 + +TG + G G + R L G VL A +G +++ ++ L LD+ Sbjct: 6 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 65 Query: 482 KTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIH-----TLKVNLIG 646 +SI A ++++ G GL LVNNA I L T H T+K N +G Sbjct: 66 DLQSIRALCDFLRKEYG--GLDVLVNNAA------IAFQLDNPTPFHIQAELTMKTNFMG 117 Query: 647 VTEVTLSMLPLVKKAQGRIVNVSSILG 727 V +LPL+ K QGR+VNVSS G Sbjct: 118 TRNVCTELLPLI-KPQGRVVNVSSTEG 143 >ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa] Length = 292 Score = 46.6 bits (109), Expect = 1e-06 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 11/188 (5%) Frame = +2 Query: 305 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLETVLLDVTK 484 L K V +TG G G +A L G V+ +T + + L+K S LE L + Sbjct: 32 LRGKKVIVTGASKGIGREMAYHLARMGAHVV---VTARSEETLKKVVSHSLE---LGASS 85 Query: 485 TESIAAATQ---WVKERVGDRG-LWGLVNNAGTFHPLCITEWLKTETW--IH----TLKV 634 +A + + ++ V G L G ++ H IT+ T + IH +++V Sbjct: 86 AHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH---ITQAFMTSVYDDIHLVRRSMEV 142 Query: 635 NLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQ 811 N + ++++ LP++K++ G IV VSS G++A A YS+SK ++ F + E Sbjct: 143 NFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKEYS 202 Query: 812 HFGVKVSI 835 V VSI Sbjct: 203 VTKVNVSI 210 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,022,544 Number of Sequences: 1040 Number of extensions: 24940 Number of successful extensions: 111 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 434,620 effective HSP length: 78 effective length of database: 353,500 effective search space used: 103929000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000288 (1119 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 385 e-125 Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 300 2e-94 Alignment gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H... 268 1e-76 Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 242 8e-73 Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 242 8e-73 Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 215 2e-66 Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 176 3e-44 Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 176 3e-44 Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 176 3e-44 Alignment gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ... 139 4e-33 >ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] Length = 317 Score = 385 bits (990), Expect(2) = e-125 Identities = 190/260 (73%), Positives = 216/260 (83%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW WYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RGLRVLAAC Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRLETV LDVTK ESIAAATQWVKE VGDRGLWGLVNNAG P+ Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 + EWL TE ++ LKVNLIGV +VTLSMLPLV++A+GRIVNVSSILGRVAFF Y SK Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD+LR E+QHFGVK+SIVEPGYFRTGMT++ +S E MKQ WKE P HIK+TYGQ Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240 Query: 947 KFFDAYHDVMKQGLSSCSTN 1006 ++FDA +++MK+GL +CSTN Sbjct: 241 QYFDALYNIMKEGLLNCSTN 260 Score = 83.2 bits (204), Expect(2) = e-125 Identities = 38/46 (82%), Positives = 41/46 (89%) Frame = +3 Query: 981 KGCLVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 +G L + LNLVTDCMEHALTSVHPRTRYSAGWDA+FFFIPLSYL Sbjct: 252 EGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYL 297 >ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] Length = 317 Score = 300 bits (768), Expect(2) = 2e-94 Identities = 149/258 (57%), Positives = 186/258 (72%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW WYRERQ++SHL DKYVFITGCDSGFG LLARQLD RGLRVLAAC Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR QTSDRLETV LDVTKTES+AAA QWVKE V D+GLWGLVNNAG P Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 E L + + L VNL+GV +VTL++LPLV++A+GR+VNV S++GRV+ FG Y SK Sbjct: 121 PNELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+++EPGYF+T +T ++ ++ ++W +K+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240 Query: 947 KFFDAYHDVMKQGLSSCS 1000 KF Y +Q C+ Sbjct: 241 KFVADYKKSAEQMEQKCT 258 Score = 65.1 bits (157), Expect(2) = 2e-94 Identities = 26/39 (66%), Positives = 34/39 (87%) Frame = +3 Query: 1002 QTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 Q L+LVT+CMEHAL + HPRTRYSAGWDA+ ++P+SY+ Sbjct: 259 QDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYM 297 >ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens] Length = 313 Score = 268 bits (686), Expect(2) = 1e-76 Identities = 128/236 (54%), Positives = 175/236 (74%) Frame = +2 Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL+T LLDVTK+ESI AA QWV+++VG++GLW LVNNAG P EWL + ++ + Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL+G+ EVTL MLP+VK+A+GR+VN+SS GRVA G Y SK GVEAFSD +R EL Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979 +FGVKV I+EPG +RT + + M+++W+ +P +D+YG+ +F Y D +K Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLK 247 Score = 37.7 bits (86), Expect(2) = 1e-76 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = +3 Query: 1017 VTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 V + MEHA+ S PR RY+ G DA+ +IPL+ L Sbjct: 260 VINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKL 293 >ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 242 bits (618), Expect(2) = 8e-73 Identities = 119/248 (47%), Positives = 166/248 (66%), Gaps = 1/248 (0%) Frame = +2 Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+ Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++ Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++ Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255 Query: 992 SCSTNPEP 1015 + + P Sbjct: 256 YVNMDLSP 263 Score = 50.8 bits (120), Expect(2) = 8e-73 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = +3 Query: 996 VAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 V L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++ Sbjct: 257 VNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297 >ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 242 bits (618), Expect(2) = 8e-73 Identities = 119/248 (47%), Positives = 166/248 (66%), Gaps = 1/248 (0%) Frame = +2 Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+ Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++ Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++ Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255 Query: 992 SCSTNPEP 1015 + + P Sbjct: 256 YVNMDLSP 263 Score = 50.8 bits (120), Expect(2) = 8e-73 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = +3 Query: 996 VAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 V L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++ Sbjct: 257 VNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297 >ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens] Length = 318 Score = 215 bits (548), Expect(2) = 2e-66 Identities = 111/244 (45%), Positives = 162/244 (66%) Frame = +2 Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460 R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77 Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640 T LLD+T +S+ A +WV+ V + GL+GLVNNAG + T WL + + L VN Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137 Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820 +G VTL++LPL+++A+GR++N++S+LGR+A G Y SK G+EAFSD LR ++ HFG Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197 Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSCS 1000 ++VSIVEPG+FRT +T+++ + ++ W +P + YG F Y M+Q + + Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLK-MQQRIMNLI 256 Query: 1001 TNPE 1012 +P+ Sbjct: 257 CDPD 260 Score = 56.2 bits (134), Expect(2) = 2e-66 Identities = 24/43 (55%), Positives = 31/43 (72%) Frame = +3 Query: 990 LVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+ L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL Sbjct: 255 LICDPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297 >ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 176 bits (446), Expect = 3e-44 Identities = 112/282 (39%), Positives = 156/282 (55%), Gaps = 16/282 (5%) Frame = +2 Query: 305 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLL 472 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 473 DVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLKVNL 640 +V +E + + V+ + D +G+WGLVNNAG TF + E+ ET+ +VNL Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV---EFTSLETYKQVAEVNL 169 Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHF 817 G +T S LPL+++A+GR+VN+SS+LGR+A + Y +K GVEAFSD LR E+ Sbjct: 170 WGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPL 229 Query: 818 GVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 GVKVS+VEPG F T + + K++W+E+P ++ YG+K+FD M+ S Sbjct: 230 GVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCS 289 Query: 992 SCSTNPEP-----GHGLHGTRSDICASPHSVLSWLGCSIFLH 1102 S ST+ P H L T P WL I H Sbjct: 290 SGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTH 331 >ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 176 bits (446), Expect = 3e-44 Identities = 112/282 (39%), Positives = 156/282 (55%), Gaps = 16/282 (5%) Frame = +2 Query: 305 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLL 472 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 473 DVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLKVNL 640 +V +E + + V+ + D +G+WGLVNNAG TF + E+ ET+ +VNL Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV---EFTSLETYKQVAEVNL 169 Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHF 817 G +T S LPL+++A+GR+VN+SS+LGR+A + Y +K GVEAFSD LR E+ Sbjct: 170 WGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPL 229 Query: 818 GVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 GVKVS+VEPG F T + + K++W+E+P ++ YG+K+FD M+ S Sbjct: 230 GVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCS 289 Query: 992 SCSTNPEP-----GHGLHGTRSDICASPHSVLSWLGCSIFLH 1102 S ST+ P H L T P WL I H Sbjct: 290 SGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTH 331 >ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 176 bits (446), Expect = 3e-44 Identities = 112/282 (39%), Positives = 156/282 (55%), Gaps = 16/282 (5%) Frame = +2 Query: 305 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLL 472 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 473 DVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLKVNL 640 +V +E + + V+ + D +G+WGLVNNAG TF + E+ ET+ +VNL Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV---EFTSLETYKQVAEVNL 169 Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHF 817 G +T S LPL+++A+GR+VN+SS+LGR+A + Y +K GVEAFSD LR E+ Sbjct: 170 WGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPL 229 Query: 818 GVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 GVKVS+VEPG F T + + K++W+E+P ++ YG+K+FD M+ S Sbjct: 230 GVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCS 289 Query: 992 SCSTNPEP-----GHGLHGTRSDICASPHSVLSWLGCSIFLH 1102 S ST+ P H L T P WL I H Sbjct: 290 SGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTH 331 >ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens] Length = 387 Score = 139 bits (350), Expect = 4e-33 Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 4/237 (1%) Frame = +2 Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSD 451 Y Q + + K V +TG D G G+ L + LD G V A L E G A++LR+ S Sbjct: 71 YLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSP 130 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL + +D+TK I A V + DRGLW ++NNAG E L + + Sbjct: 131 RLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGELLLMTDYKQCMA 190 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 808 VN G EVT + LPL++K++GR+VNVSS+ G A Y SSK V FS V+R EL Sbjct: 191 VNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLEL 250 Query: 809 QHFGVKVSIVEPGYFRTGMTDVQKSSEAM-KQVWKEVPAHIKDTYGQKFFDAYHDVM 976 +G+KV+ ++PG F T + E + K + +PA +++ YGQ + A + + Sbjct: 251 SKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYILAQRNFL 307 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,600,233 Number of Sequences: 39411 Number of extensions: 1088183 Number of successful extensions: 4786 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3590 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4732 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3689390414 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000288 (1119 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 397 e-129 Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 387 e-126 Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 320 e-100 Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 312 1e-97 Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 280 8e-81 Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 245 1e-74 Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 228 2e-69 Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 170 3e-42 Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 144 1e-34 Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 129 7e-30 >ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris] Length = 317 Score = 397 bits (1020), Expect(2) = e-129 Identities = 193/260 (74%), Positives = 217/260 (83%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+ERVGDRGLWGLVNNAG FHP C Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 +EWLK E ++ KVNL G+ EVTLSMLPL+++A+GRIVNVSSILGR+AFFG Y SSK Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL+HFGVK+SIVEPGYFRTGMT V E +KQ W+EVP HIK+ YGQ Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240 Query: 947 KFFDAYHDVMKQGLSSCSTN 1006 KFFDA+H+ +KQGL CSTN Sbjct: 241 KFFDAHHNGVKQGLLKCSTN 260 Score = 84.0 bits (206), Expect(2) = e-129 Identities = 38/46 (82%), Positives = 41/46 (89%) Frame = +3 Query: 981 KGCLVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 +G L + LNLVTDCMEHALTSVHPRTRYSAGWD+QFFFIPLSYL Sbjct: 252 QGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYL 297 >ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris] Length = 323 Score = 387 bits (993), Expect(2) = e-126 Identities = 191/266 (71%), Positives = 216/266 (81%), Gaps = 6/266 (2%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+ERVGDRGLWGLVNNAG FHP C Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 +EWLK E ++ KVNL G+ EVTLSMLPL+++A+GRIVNVSSILGR+AFFG Y SSK Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL+HFGVK+SIVEPGYFRTGMT V E +KQ W+EVP HIK+ YGQ Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240 Query: 947 KFFDAY------HDVMKQGLSSCSTN 1006 KFF ++ H+ +KQGL CSTN Sbjct: 241 KFFASFLFLYTDHNGVKQGLLKCSTN 266 Score = 84.0 bits (206), Expect(2) = e-126 Identities = 38/46 (82%), Positives = 41/46 (89%) Frame = +3 Query: 981 KGCLVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 +G L + LNLVTDCMEHALTSVHPRTRYSAGWD+QFFFIPLSYL Sbjct: 258 QGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYL 303 >ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris] Length = 317 Score = 320 bits (820), Expect(2) = e-100 Identities = 157/260 (60%), Positives = 195/260 (75%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+E VGDRGLWGLVNNAG P Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+G+ EVTLS+L LV+KA+GR+VNVSSI+GR++ G Y SK Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+++EPGYF T +T+ +K S ++ W + +++ YG+ Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240 Query: 947 KFFDAYHDVMKQGLSSCSTN 1006 +F + +++ S C TN Sbjct: 241 EFLASARKPIEKLKSMCDTN 260 Score = 63.5 bits (153), Expect(2) = e-100 Identities = 26/37 (70%), Positives = 32/37 (86%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L LVT+CMEHALT+ HPRTRYS GWDA+ ++P+SYL Sbjct: 261 LYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYL 297 >ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris] Length = 319 Score = 312 bits (800), Expect(2) = 1e-97 Identities = 152/241 (63%), Positives = 186/241 (77%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+E VGDRGLWGLVNNAG P Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EWL + ++ L VNL+G+ EVTLS+L LV+KA+GR+VNVSSI+GR++ G Y SK Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+++EPGYF T +T+ +K S ++ W + +++ YG+ Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240 Query: 947 K 949 + Sbjct: 241 E 241 Score = 63.5 bits (153), Expect(2) = 1e-97 Identities = 26/37 (70%), Positives = 32/37 (86%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L LVT+CMEHALT+ HPRTRYS GWDA+ ++P+SYL Sbjct: 263 LYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYL 299 >ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris] Length = 313 Score = 280 bits (717), Expect(2) = 8e-81 Identities = 138/241 (57%), Positives = 179/241 (74%) Frame = +2 Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL+T LLDVT+TESI AATQWV+++VG++GLW LVNNAG P EWL E ++ + Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL+G+ EVTL MLP+VKKA+GR+VN+SS GRVA G Y SK GVEAFSD +R EL Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELH 191 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 +FGVKVSI+EPG +RT + + M+++W+ +P KD+YG+++F Y D +K + Sbjct: 192 YFGVKVSIIEPGNYRTSILGKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQ 251 Query: 992 S 994 S Sbjct: 252 S 252 Score = 39.7 bits (91), Expect(2) = 8e-81 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +3 Query: 1017 VTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 VT+ MEHA+ S PR RY+ G DA+ ++PL+ L Sbjct: 260 VTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKL 293 >ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris] Length = 753 Score = 245 bits (626), Expect(2) = 1e-74 Identities = 119/240 (49%), Positives = 166/240 (69%), Gaps = 1/240 (0%) Frame = +2 Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE + L+ +TS+ Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++ Sbjct: 510 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 VNL G+ VTL++LPLVKKA+GRI+NVSSI GR+A G Y+ SK+ VE F+D LR +++ Sbjct: 570 VNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVEGFNDSLRRDMK 629 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991 FGV VS +EPG F+TG++D K++E +WK + IK YG+ + + D +K S Sbjct: 630 AFGVHVSCIEPGLFKTGLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTS 689 Score = 54.3 bits (129), Expect(2) = 1e-74 Identities = 23/37 (62%), Positives = 33/37 (89%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LV +CM+HALTS+ P+TRY+AG DA+ F+IPLS++ Sbjct: 695 LSLVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHM 731 >ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris] Length = 339 Score = 228 bits (581), Expect(2) = 2e-69 Identities = 120/267 (44%), Positives = 168/267 (62%) Frame = +2 Query: 191 LPNKHFSGGPHTMWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQ 370 LP SG MW W R++Q + D +VFITGCDSGFG LLA + Sbjct: 12 LPPAGHSGS--AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALR 68 Query: 371 LDVRGLRVLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWG 550 LD RG RVLA+CLT GA+ L++ S RL T LLDVT+ +S+ A +WV+ VG+ GL+G Sbjct: 69 LDQRGFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFG 128 Query: 551 LVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGR 730 LVNNAG + T WL + + L VN +G VTL++LPL+++++GR+VN+SS+LGR Sbjct: 129 LVNNAGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGR 188 Query: 731 VAFFGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWK 910 +A G Y SK G+EAFSD LR ++ HFGV+VSIVEPG+FRT +T+++ +++ W Sbjct: 189 LAANGGGYCVSKFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRTPVTNLEHLENTLQECWA 248 Query: 911 EVPAHIKDTYGQKFFDAYHDVMKQGLS 991 +P + YG+ F Y V + +S Sbjct: 249 RLPPSTQAHYGEAFLPKYLQVQQHIMS 275 Score = 53.9 bits (128), Expect(2) = 2e-69 Identities = 23/43 (53%), Positives = 31/43 (72%) Frame = +3 Query: 990 LVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+ L V+ C+EHALT+ +PRTRYS GWDA+ ++P SYL Sbjct: 276 LICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYL 318 >ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris] Length = 299 Score = 170 bits (430), Expect = 3e-42 Identities = 109/286 (38%), Positives = 158/286 (55%), Gaps = 16/286 (5%) Frame = +2 Query: 293 MVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLE 460 ++ +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64 Query: 461 TVLLDVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTL 628 T+ L+V K E + + V+ + D +G+WGLVNNAG TF + E+ ET+ Sbjct: 65 TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFGEV---EFTSMETYKEVA 121 Query: 629 KVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCE 805 +VNL G ++T + LPL+++A+GRIVN+SS+LGR+A + Y +K GVEAFSD LR E Sbjct: 122 EVNLWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYE 181 Query: 806 LQHFGVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979 + GVKVS+VEPG F T + + ++ ++W E+P ++ YG+K+FD M+ Sbjct: 182 MYPLGVKVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQ 241 Query: 980 QGLSSCSTNPEP-----GHGLHGTRSDICASPHSVLSWLGCSIFLH 1102 +S ST+ P H L P WL I H Sbjct: 242 AYCNSGSTDISPVVSAVTHALTSRSPYTRYHPMDYYWWLRMQIMTH 287 >ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris] Length = 382 Score = 144 bits (364), Expect = 1e-34 Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 4/250 (1%) Frame = +2 Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSD 451 Y Q + + K V ITG DSGFG+ L++ LD G V L E+G A++LR+ S Sbjct: 72 YLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSK 131 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 RL + +D+T + I A V E++ DRGLW +VNNAG E + + + Sbjct: 132 RLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMA 191 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 808 VN G EVT + LPL++K++GR+VN+SS+ V A YSSSK + FS V+R EL Sbjct: 192 VNFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQEL 251 Query: 809 QHFGVKVSIVEPGYFRTGMTDVQKS-SEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQG 985 +GVKVS+++PG FRT + + S+ K + + + +++ YG+ + + +K Sbjct: 252 SKWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSI 311 Query: 986 LSSCSTNPEP 1015 +T+ P Sbjct: 312 NIKTNTDISP 321 >ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris] Length = 323 Score = 129 bits (323), Expect = 7e-30 Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 4/215 (1%) Frame = +2 Query: 335 CDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKTESIAAAT 508 CDSGFG A++LD G VLA L G A +LR S RL + +D+TK I+ A Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67 Query: 509 QWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKK 688 ++ K GLWGLVNNAG + E T+ ++VN G E+T +LPL+++ Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127 Query: 689 AQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRT-G 862 ++GRIV V S G + + A Y +SK + D CEL +GVKVS+++PG F+T Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187 Query: 863 MTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYH 967 + +V + + + +P + YG+ + + H Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLH 222 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,174,091 Number of Sequences: 33732 Number of extensions: 1093425 Number of successful extensions: 4659 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4620 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 4223261116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000288 (1119 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m... 353 e-114 Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 313 2e-99 Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 310 4e-99 Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 305 2e-98 Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 306 6e-98 Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 307 2e-97 Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 296 9e-95 Alignment gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc... 266 1e-75 Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 246 3e-74 Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] 224 1e-69 >ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus] Length = 317 Score = 353 bits (905), Expect(2) = e-114 Identities = 175/260 (67%), Positives = 203/260 (78%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVGDRGLWGLVNNAG P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EW + E ++ +VNLIG+T+VT+SML LVKKA+GRIVNVSS LGRVA FG YS SK Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSDVLR E+Q FGVKVSI+EPG F+T MTD + + E K+VW+ P HIK++YGQ Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240 Query: 947 KFFDAYHDVMKQGLSSCSTN 1006 +FFD + K+ L CS N Sbjct: 241 QFFDDFCSTTKRELMKCSRN 260 Score = 78.2 bits (191), Expect(2) = e-114 Identities = 34/40 (85%), Positives = 38/40 (95%) Frame = +3 Query: 999 AQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 ++ L+LVTDCMEHALTS HPRTRYSAGWDA+FFFIPLSYL Sbjct: 258 SRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYL 297 >ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] Length = 316 Score = 313 bits (801), Expect(2) = 2e-99 Identities = 155/258 (60%), Positives = 198/258 (76%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA+QLR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAG-ICVFA 119 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 I EWLK E + + L VNL+G+ EVTLSMLPLV+KA+GR+VN+SS +GRV+ G Y SK Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR E+ +FGVKV+I+EPG FRT +++ ++ S +++++W + + +K+ Y + Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239 Query: 947 KFFDAYHDVMKQGLSSCS 1000 F D+Y ++ +CS Sbjct: 240 NFLDSYIKAIQSLTDTCS 257 Score = 69.7 bits (169), Expect(2) = 2e-99 Identities = 28/37 (75%), Positives = 35/37 (94%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L++VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSY+ Sbjct: 260 LSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYM 296 >ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] Length = 317 Score = 310 bits (795), Expect(2) = 4e-99 Identities = 154/246 (62%), Positives = 189/246 (76%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW R++RERQ+VSHL KYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GR++FFG Y SK Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+I+EPG F+T +T + S K +W + + +K+ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240 Query: 947 KFFDAY 964 KF Y Sbjct: 241 KFLLFY 246 Score = 70.9 bits (172), Expect(2) = 4e-99 Identities = 30/37 (81%), Positives = 35/37 (94%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L++VTDCMEHALT+ HPRTRYSAGWDA+F F+PLSYL Sbjct: 261 LSVVTDCMEHALTARHPRTRYSAGWDAKFLFLPLSYL 297 >ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus] Length = 318 Score = 305 bits (782), Expect(2) = 2e-98 Identities = 152/247 (61%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG PL Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSS 763 +++W+ + + L VNL+G+ EVTL+MLPLV+KA+GR+VNVSSI+GRV+ G Y S Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180 Query: 764 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 943 K+GVEAFSD LR EL +FGVKV+I+EPG+F TGM + S + +W + + I++ YG Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240 Query: 944 QKFFDAY 964 +K+ Y Sbjct: 241 EKYLAFY 247 Score = 73.6 bits (179), Expect(2) = 2e-98 Identities = 32/37 (86%), Positives = 35/37 (94%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LVTDCMEHALT+ HPRTRYSAGWDA+ FFIPLSYL Sbjct: 262 LSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYL 298 >ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] Length = 317 Score = 306 bits (783), Expect(2) = 6e-98 Identities = 149/246 (60%), Positives = 188/246 (76%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW ++RERQ+VS+L DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA++LR +TSDRLETV+LDVTKTESI ATQWVKERVG+RGLWGLVNNAG P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EW+K + + H L VNL+G+ EVTLSMLPLV+KA+GR++NV+S+LGRV+ G Y SK Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+I+EPG+F TG+T + + +W + + I++ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240 Query: 947 KFFDAY 964 K+ +Y Sbjct: 241 KYLASY 246 Score = 71.6 bits (174), Expect(2) = 6e-98 Identities = 30/37 (81%), Positives = 35/37 (94%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LVTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL Sbjct: 261 LSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297 >ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] Length = 317 Score = 307 bits (787), Expect(2) = 2e-97 Identities = 150/246 (60%), Positives = 187/246 (76%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW R++R RQ+VSHL DKYVFITGCDSGFG LLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 LTE+GA++LR +TSDRLETV+LDVTKTESI ATQWVKE VG+RGLWGLVNNAG P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766 EW+K + + H L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GRV+ FG Y SK Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180 Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946 +GVEAFSD LR EL +FGVKV+I+EPG+F TG+T + + +W + + I++ YG+ Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240 Query: 947 KFFDAY 964 K+ +Y Sbjct: 241 KYLASY 246 Score = 68.6 bits (166), Expect(2) = 2e-97 Identities = 29/37 (78%), Positives = 34/37 (91%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+ VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL Sbjct: 261 LSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297 >ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus musculus] Length = 318 Score = 296 bits (758), Expect(2) = 9e-95 Identities = 148/247 (59%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Frame = +2 Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406 MW R++RERQ+V HL DKYVFITGC SGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60 Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586 E+GA++LR++TS+RLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG P Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120 Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGA-VYSSS 763 EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSSILGRV+ G+ Y S Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180 Query: 764 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 943 K+G+EAFSD LR EL++FGVKV+I+EPG+F TGM + ++ +W + + I++ YG Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240 Query: 944 QKFFDAY 964 +K+ +Y Sbjct: 241 EKYLASY 247 Score = 70.5 bits (171), Expect(2) = 9e-95 Identities = 30/37 (81%), Positives = 34/37 (91%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L++VTDCMEHALT+ HPRTRYSAGWDA+ FF PLSYL Sbjct: 262 LSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYL 298 >ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus] Length = 313 Score = 266 bits (679), Expect(2) = 1e-75 Identities = 124/231 (53%), Positives = 173/231 (74%) Frame = +2 Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451 RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71 Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631 +L+T LLDVTK+E++ A QWV+++VG++GLW LVNNAG P EWL + ++ + Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131 Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811 +NL+G+ +VTL+MLP++KKA+GR+VN+SS GRVA FG Y SK GVEAFSD +R EL Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191 Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAY 964 FGVKVSI+EPG ++T + + MK++W +P +D+YG+++F Y Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTY 242 Score = 37.0 bits (84), Expect(2) = 1e-75 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +3 Query: 1017 VTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 VT+ MEHA+ S PR RY+ G D +F ++ L+ L Sbjct: 260 VTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKL 293 >ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus] Length = 319 Score = 246 bits (628), Expect(2) = 3e-74 Identities = 119/239 (49%), Positives = 164/239 (68%) Frame = +2 Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRL 457 Y+ + ++ + DKYVFITGCD+GFGNL AR D +G RV+AACLTE G+ L+ +TS+RL Sbjct: 18 YKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTESGSAALKAKTSERL 77 Query: 458 ETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVN 637 TVLLDVT E++ QWVK VG++GLWGL+NNAG L T+WL + + ++VN Sbjct: 78 HTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVN 137 Query: 638 LIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHF 817 L G+ VTL+MLPLVKKA+GR++NVSSI GR+AF G Y+ SK+ VE F+D LR +++ F Sbjct: 138 LFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSKYAVEGFNDSLRRDMKAF 197 Query: 818 GVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSS 994 GV VS +EPG F+T + D K++E +WK + IK YG+ + + +K SS Sbjct: 198 GVHVSCIEPGLFKTELADPIKTTEKKLAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSS 256 Score = 52.0 bits (123), Expect(2) = 3e-74 Identities = 23/37 (62%), Positives = 31/37 (83%) Frame = +3 Query: 1008 LNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+LV CM+HALTS+ P+TRY AG DA+ F+IPLS++ Sbjct: 261 LSLVVGCMDHALTSLFPKTRYIAGKDAKTFWIPLSHM 297 >ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] Length = 318 Score = 224 bits (572), Expect(2) = 1e-69 Identities = 112/234 (47%), Positives = 158/234 (67%) Frame = +2 Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460 R+RQ + D ++FITGCDSGFG LLA QLD +G +VLA CLT GA+ L++ S RL Sbjct: 19 RDRQSLP-ASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLH 77 Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640 T LLD+T +++ +WVK RVG+ GL+GLVNNAG + T WL + + L VN Sbjct: 78 TTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNT 137 Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820 +G VTL++LPL+++A+GR+VN++S+LGR+A G Y SK G+EAFSD LR ++ FG Sbjct: 138 LGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFG 197 Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQ 982 V+VSIVEPG+FRT +T+++ +K W +P I+ YG+ F D Y V ++ Sbjct: 198 VQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRR 251 Score = 58.5 bits (140), Expect(2) = 1e-69 Identities = 25/43 (58%), Positives = 31/43 (72%) Frame = +3 Query: 990 LVVAQTLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1118 L+ L VT C+EHALT+ HPRTRYS GWDA+ ++P SYL Sbjct: 255 LICDPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,112,090 Number of Sequences: 45328 Number of extensions: 1275302 Number of successful extensions: 5159 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5107 length of database: 21,768,885 effective HSP length: 105 effective length of database: 17,009,445 effective search space used: 4541521815 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)