BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000715 (1028 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 84 6e-18 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 73 1e-14 Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 65 3e-12 Alignment gi|NP_998992.1| carbonyl reductase [Sus scrofa] 60 9e-11 Alignment gi|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa] 59 2e-10 Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 51 5e-08 >ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa] Length = 292 Score = 84.0 bits (206), Expect = 6e-18 Identities = 60/178 (33%), Positives = 90/178 (50%) Frame = +2 Query: 230 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 409 RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V LE G Sbjct: 28 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSA 86 Query: 410 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 589 + D+ +L G +D+L+ N V + + + MEVN Sbjct: 87 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITQAFMTSVYDDIHLVRRSMEVN 143 Query: 590 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 763 +L V L+ LP M+++ G I+ V+S G +A PL Y ASK AL GFF+++ E Sbjct: 144 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 72.8 bits (177), Expect = 1e-14 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 1/194 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L + V VT ++ GIG + +L++ G +V+S+R+ + ++R G+ + Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL----SVTG 67 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQR-SLCVDTSLDVYKELMEVNYLGT 601 + E + G +DILV+N V+ +D + +V+ +++ VN T Sbjct: 68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127 Query: 602 VSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPG 781 V +TK V+P M ++ G ++ V+S P G Y SK AL G L ELA Sbjct: 128 VLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAP-RN 186 Query: 782 ITVSNVCPGPVKSN 823 I V+ + PG +K+N Sbjct: 187 IRVNCLAPGLIKTN 200 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 65.1 bits (157), Expect = 3e-12 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 10/202 (4%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V +TG SG G+ +L +G +++ + + + R + LK +L +DL Sbjct: 85 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLK-----LLQMDL 139 Query: 440 ANRSSHEVATKAVLQEFGKIDI-------LVNNGGVSQRSLCVDTSLD---VYKELMEVN 589 + A + + EF K+ LVNN G L D L Y+ MEVN Sbjct: 140 T-----KPADISRVLEFTKVHTASTGLWGLVNNAG--HNILVADAELSPVATYRSCMEVN 192 Query: 590 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELA 769 + GT+ +TK +LP ++ + G+I+TV+S G + P Y SK A+ ++ EL Sbjct: 193 FFGTLEMTKALLP-LLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 251 Query: 770 TYPGITVSNVCPGPVKSNIVKN 835 + G+ VS + P ++ VKN Sbjct: 252 PW-GVKVSVIQPACFRTEAVKN 272 >ref|NP_998992.1| carbonyl reductase [Sus scrofa] Length = 244 Score = 60.1 bits (144), Expect = 9e-11 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 1/211 (0%) Frame = +2 Query: 266 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 445 VTGA GIG + V L G +V R +L + + C I + +DL + Sbjct: 12 VTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQEC--------PGIEPVCVDLGD 63 Query: 446 RSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVL 625 AT+ L G +D+LVNN V+ +DT+ +V+ VN +++ V Sbjct: 64 WE----ATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 119 Query: 626 PHMIEK-KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVC 802 MIE+ G I+ V+S + + P Y ++K A+ ++ EL + I V++V Sbjct: 120 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHK-IRVNSVN 178 Query: 803 PGPVKSNIVKNALTEEVTKTLGSDADQSHKM 895 P +V A+ VT SD + + K+ Sbjct: 179 P-----TVVLTAMGRSVT----SDPELARKL 200 >ref|NP_999471.1| 17beta-estradiol dehydrogenase [Sus scrofa] Length = 737 Score = 58.9 bits (141), Expect = 2e-10 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 8/177 (4%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLS-----ARRVQELERVKRRCLENGILKGKDIL 421 VV VTGA G+G ++ G S+V++ + V + + +E KG + Sbjct: 11 VVLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGKAV 70 Query: 422 ILPLDLANRSSHEVA---TKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNY 592 AN S E KA L FG+ID++VNN G+ + S + + + V+ Sbjct: 71 ------ANYDSVEAGEKIVKAALDAFGRIDVVVNNAGILRDRSFSRISDEDWDMIQRVHL 124 Query: 593 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 763 G+ +T+ HM ++ G+II +S GI Y A+K L G N+L E Sbjct: 125 RGSFMVTRAAWDHMKKQNFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNSLAVE 181 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 50.8 bits (120), Expect = 5e-08 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSK-LGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 433 V VTGA+ GIG +V L + +VL+AR V + ++ G+ L Sbjct: 7 VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR----FHQL 62 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKEL-MEVNYLGTVSL 610 D+ + S + +E+G +D+LVNN ++ + L T + EL M+ N++GT ++ Sbjct: 63 DIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQ-LDNPTPFHIQAELTMKTNFMGTRNV 121 Query: 611 TKCVLPHMIEKKQGKIITVNSFMGIIA 691 +LP + K QG+++ V+S G+ A Sbjct: 122 CTELLP--LIKPQGRVVNVSSTEGVRA 146 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 960,483 Number of Sequences: 1040 Number of extensions: 23071 Number of successful extensions: 77 Number of sequences better than 1.0e-05: 6 Number of HSP's better than 0.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 70 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 93953100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000715 (1028 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase S... 484 e-137 Alignment gi|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus] 148 6e-36 Alignment gi|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus] 105 4e-23 Alignment gi|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase S... 94 2e-19 Alignment gi|XP_581861.2| PREDICTED: similar to follicular lymphoma varia... 93 3e-19 Alignment gi|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus] 92 7e-19 Alignment gi|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bo... 89 6e-18 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 85 1e-16 >ref|XP_591832.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7 precursor (Retinal short-chain dehydrogenase/reductase 4) (retSDR4) [Bos taurus] Length = 339 Score = 484 bits (1246), Expect(2) = e-137 Identities = 242/303 (79%), Positives = 262/303 (86%) Frame = +2 Query: 104 MSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTDMVVWVTGASS 283 MSWE D DLTLLWAEWQGRRPEWELTDMVVWVTGASS Sbjct: 1 MSWELLLWLLALCALLALVVQLLRFLRADADLTLLWAEWQGRRPEWELTDMVVWVTGASS 60 Query: 284 GIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLANRSSHEV 463 GIGEEL YQLSKLGVSLVLSARR+ ELERVKR+CLENG LK KDILILPLDL +RSSHE+ Sbjct: 61 GIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILILPLDLTDRSSHEM 120 Query: 464 ATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCVLPHMIEK 643 ATKAVLQEFG+IDILVNNGGVSQR+LCVDTSLDV+KEL+E+NYLGTVSLTKCVLPHMIE+ Sbjct: 121 ATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELNYLGTVSLTKCVLPHMIER 180 Query: 644 KQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNVCPGPVKSN 823 KQGKI+TVNS +GIIAAPLS GYCASKHALRGFFNTLR+ELATYPGIT+SN+CPGPV+SN Sbjct: 181 KQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYPGITISNICPGPVQSN 240 Query: 824 IVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQPFLSMAYLWHI 1003 IVKNALTEEVTK GS ADQS+KMATSRC RLML+AMANDLKEVWI++QPFL M YLW Sbjct: 241 IVKNALTEEVTKPTGSTADQSYKMATSRCVRLMLVAMANDLKEVWISDQPFLLMIYLWQ- 299 Query: 1004 YQP 1012 Y P Sbjct: 300 YMP 302 Score = 23.1 bits (48), Expect(2) = e-137 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +1 Query: 1000 YIPTWAWWL 1026 Y+PT AWWL Sbjct: 300 YMPTLAWWL 308 >ref|NP_001030420.1| hypothetical protein LOC522283 [Bos taurus] Length = 325 Score = 148 bits (374), Expect = 6e-36 Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 3/256 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLEN---GILKGKDILIL 427 VV +TGA+SG+G E G LVL R + LE + + + G+ K + Sbjct: 54 VVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVT 113 Query: 428 PLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVS 607 DLA+ + A +LQ FG +D+L+NN G+S R VDTS DV K +ME NY G V+ Sbjct: 114 -FDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVA 172 Query: 608 LTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGIT 787 LTK +LP MI ++QG ++ ++S G I+ P Y ASKHA + FF+ LR E+ + I Sbjct: 173 LTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH-DIE 231 Query: 788 VSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAE 967 V+ + PG + +N+ NA+T + +K D + + + A+ +L A+ K+V +A+ Sbjct: 232 VTVISPGYIHTNLSLNAVTADGSKYGVMDETTAQGRSPVQVAQDILAALGKKKKDVVLAD 291 Query: 968 QPFLSMAYLWHIYQPG 1015 P S+A PG Sbjct: 292 -PMPSLAVYLRTLAPG 306 >ref|XP_589371.1| PREDICTED: similar to CG7601-PA [Bos taurus] Length = 311 Score = 105 bits (263), Expect = 4e-23 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 433 VV +T A SG+G+E G LVL + + L+ + + K ++ L Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQSLYDALISVADPSKTFTPKLVLL 98 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 DL++ S + K VL +G +DIL+NN V + SL++ K++M+ NY G + LT Sbjct: 99 DLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPIILT 158 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 793 K +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y + VS Sbjct: 159 KALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY-DVVVS 217 Query: 794 NVCPGPVKS 820 V P ++S Sbjct: 218 TVSPTFIRS 226 >ref|XP_872682.1| PREDICTED: similar to Dehydrogenase/reductase SDR family member 8 precursor (17-beta-hydroxysteroid dehydrogenase 11) (17-beta-HSD 11) (17-beta-HSD XI) (17betaHSDXI) (17bHSD11) (17betaHSD11) (Retinal short-chain dehydrogenase/reductase 2) (retSDR2) (Cutaneous... iso [Bos taurus] Length = 316 Score = 93.6 bits (231), Expect = 2e-19 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 2/202 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 +T +V +TGA GIG + Y+ +KL LVL +E + C E + I Sbjct: 50 VTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKVIVESLGYLCREGST----KVFI 105 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 604 ++ + S A + V E G + ILVNN GV S T ++ EVN L Sbjct: 106 FIMNCSTESEMNQAAQEVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 165 Query: 605 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 778 TK LP M++ G I+TV S G P YC+SK A GF L EL+ Sbjct: 166 WTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRT 225 Query: 779 GITVSNVCPGPVKSNIVKNALT 844 G+ + +CP + + +KN T Sbjct: 226 GVKTTCLCPNFINTGFIKNPST 247 >ref|XP_581861.2| PREDICTED: similar to follicular lymphoma variant translocation 1 [Bos taurus] Length = 455 Score = 93.2 bits (230), Expect = 3e-19 Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 31/277 (11%) Frame = +2 Query: 218 WQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENG 397 W+ +P LT VTG SSGIG+ + + K G + L AR +L + K+ ++ Sbjct: 149 WKQPKPHALLT-----VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHS 203 Query: 398 ILKGKDILILPLDLANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKE 574 I + +L + +D++ S E K ++ G +D+LVN G+S D + ++ Sbjct: 204 INDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFER 263 Query: 575 LMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTL 754 LM +NYLG+V ++ V+ M E++ G+++ V+S G + Y +SK ALRG L Sbjct: 264 LMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEAL 323 Query: 755 RTELATY--------------PGITVSN---------------VC-PGPVKSNIVKNALT 844 + E+ Y PG N VC P V IVK+A+ Sbjct: 324 QMEVKPYNVYVTVAYPPDTDTPGFAKENQTKPLETRLISETTSVCKPEQVAKQIVKDAVQ 383 Query: 845 EEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEV 955 ++GSD + +++ C + ++ L++V Sbjct: 384 GNFNSSIGSD---GYMLSSLTCGMAPVTSIMEGLQQV 417 >ref|NP_776592.1| retinol dehydrogenase 8 (all-trans) [Bos taurus] Length = 312 Score = 92.0 bits (227), Expect = 7e-19 Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 1/208 (0%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V ++G SSGIG EL QL+ +++L + G G+ + + LD+ Sbjct: 8 VLISGCSSGIGLELAVQLAHDPRQRYQVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67 Query: 440 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 619 S VA + G++D+LVNN GV SL + + + N+ G V L K Sbjct: 68 C--SDESVAQCLNCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKA 125 Query: 620 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 799 VLP M ++QG I+ V+S MG+ + Y ASK A+ GFF +L +L + I +S V Sbjct: 126 VLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQF-NIFISLV 184 Query: 800 CPGPVKSNIVKNALTEEVTKTL-GSDAD 880 PGPV + L + T G+D D Sbjct: 185 EPGPVVTEFEGKLLEQVSTAEFPGTDPD 212 >ref|NP_996852.1| 11-beta-hydroxysteroid dehydrogenase type 3 [Bos taurus] Length = 287 Score = 89.0 bits (219), Expect = 6e-18 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V +TG S+GIGEEL Y ++LG LVL+A L++V C + G K + + D+ Sbjct: 32 VLLTGVSAGIGEELAYHYARLGSHLVLTAHTEALLQQVVGNCRKLGAPK---VFYIAADM 88 Query: 440 ANRSSHEVATKAVLQEFGKIDILV-NNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 A+ E + L + G +D LV N+ G + V +S + LM++N+L V LT Sbjct: 89 ASPEVPERVVQFALDKLGGLDYLVLNHLGAAPAGTRVRSSQST-RWLMQMNFLSYVQLTS 147 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 766 LP + + K G ++ V+S +G + S Y A+K AL FF++LR EL Sbjct: 148 SALPSLTDSK-GSLVVVSSLLGRVPTSFSSPYSAAKFALDSFFSSLRREL 196 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 84.7 bits (208), Expect = 1e-16 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L D V++TG SG G L QL G+ ++ + + E+++ + + + Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 592 + LD+ S AT+ V + G + LVNN G+S + + T D K +++VN Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138 Query: 593 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 772 LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL + Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195 Query: 773 YPGITVSNVCPGPVKSNI 826 Y G+ V + PG K+ + Sbjct: 196 YFGVKVVMIEPGYFKTAV 213 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 84.7 bits (208), Expect = 1e-16 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L D V++TG SG G L QL G+ ++ + + E+++ + + + Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 592 + LD+ S AT+ V + G + LVNN G+S + + T D K +++VN Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138 Query: 593 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 772 LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL + Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195 Query: 773 YPGITVSNVCPGPVKSNI 826 Y G+ V + PG K+ + Sbjct: 196 YFGVKVVMIEPGYFKTAV 213 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 84.7 bits (208), Expect = 1e-16 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L D V++TG SG G L QL G+ ++ + + E+++ + + + Sbjct: 27 LRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKGAEQLRNQTSDR-------LQT 79 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD--TSLDVYKELMEVNY 592 + LD+ S AT+ V + G + LVNN G+S + + T D K +++VN Sbjct: 80 VILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMK-ILDVNL 138 Query: 593 LGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT 772 LG + +T VLP ++ K +G+++ V+S MG +A L GGYC SK+ + F ++LR EL + Sbjct: 139 LGVIDVTLSVLP-LVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRREL-S 195 Query: 773 YPGITVSNVCPGPVKSNI 826 Y G+ V + PG K+ + Sbjct: 196 YFGVKVVMIEPGYFKTAV 213 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,077,228 Number of Sequences: 33508 Number of extensions: 833315 Number of successful extensions: 2344 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2284 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 3046754400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000715 (1028 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [... 469 e-133 Alignment gi|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens] 145 7e-35 Alignment gi|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens] 106 4e-23 Alignment gi|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens] 106 4e-23 Alignment gi|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [... 100 2e-21 Alignment gi|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa... 93 4e-19 Alignment gi|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sa... 93 4e-19 Alignment gi|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens] 92 7e-19 Alignment gi|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo... 92 7e-19 Alignment gi|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform ... 90 3e-18 >ref|NP_057113.1| dehydrogenase/reductase (SDR family) member 7 [Homo sapiens] Length = 339 Score = 469 bits (1206), Expect(2) = e-133 Identities = 229/275 (83%), Positives = 252/275 (91%) Frame = +2 Query: 188 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELE 367 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEEL YQLSKLGVSLVLSARRV ELE Sbjct: 29 DGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELE 88 Query: 368 RVKRRCLENGILKGKDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV 547 RVKRRCLENG LK KDIL+LPLDL + SHE ATKAVLQEFG+IDILVNNGG+SQRSLC+ Sbjct: 89 RVKRRCLENGNLKEKDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCM 148 Query: 548 DTSLDVYKELMEVNYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKH 727 DTSLDVY++L+E+NYLGTVSLTKCVLPHMIE+KQGKI+TVNS +GII+ PLS GYCASKH Sbjct: 149 DTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKH 208 Query: 728 ALRGFFNTLRTELATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSR 907 ALRGFFN LRTELATYPGI VSN+CPGPV+SNIV+N+L EVTKT+G++ DQSHKM TSR Sbjct: 209 ALRGFFNGLRTELATYPGIIVSNICPGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSR 268 Query: 908 CARLMLIAMANDLKEVWIAEQPFLSMAYLWHIYQP 1012 C RLMLI+MANDLKEVWI+EQPFL + YLW Y P Sbjct: 269 CVRLMLISMANDLKEVWISEQPFLLVTYLWQ-YMP 302 Score = 27.3 bits (59), Expect(2) = e-133 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 1000 YIPTWAWWL 1026 Y+PTWAWW+ Sbjct: 300 YMPTWAWWI 308 >ref|NP_056325.2| hypothetical protein LOC25979 [Homo sapiens] Length = 325 Score = 145 bits (365), Expect = 7e-35 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 2/243 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 418 L + VV +TGA+SG+G+E G LVL R LE + R + K + Sbjct: 50 LRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKP 109 Query: 419 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 598 ++ DL + + A +LQ FG +DILVNN G+S R +DT++DV K +ME NY G Sbjct: 110 YLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFG 169 Query: 599 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 778 V+LTK +LP MI+++QG I+ ++S G ++ P Y ASKHA + FF+ LR E+ Y Sbjct: 170 PVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYE 229 Query: 779 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 958 I V+ + PG + +N+ NA+T + ++ D + + A+ +L A+ K+V Sbjct: 230 -IEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKKDVI 288 Query: 959 IAE 967 +A+ Sbjct: 289 LAD 291 >ref|XP_943583.1| PREDICTED: similar to CG7601-PA [Homo sapiens] Length = 308 Score = 106 bits (264), Expect = 4e-23 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 433 VV +T A SG+G+E G LVL + + LE + + K ++ L Sbjct: 36 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 DL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++LT Sbjct: 96 DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 793 K +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +S Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214 Query: 794 NVCPGPVKS 820 V P ++S Sbjct: 215 TVSPTFIRS 223 >ref|XP_113912.3| PREDICTED: similar to CG7601-PA [Homo sapiens] Length = 308 Score = 106 bits (264), Expect = 4e-23 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGI-LKGKDILILPL 433 VV +T A SG+G+E G LVL + + LE + + K ++ L Sbjct: 36 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLL 95 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 DL++ S K VL +G +DIL+NN V + SL++ K++M+ NY G ++LT Sbjct: 96 DLSDISCVPDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLT 155 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 793 K +LP+MI ++ G+I+ VN+ G P Y ASKHA GFF+ LR E+ Y + +S Sbjct: 156 KALLPNMISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEY-DVVIS 214 Query: 794 NVCPGPVKS 820 V P ++S Sbjct: 215 TVSPTFIRS 223 >ref|NP_057329.1| dehydrogenase/reductase (SDR family) member 8 [Homo sapiens] Length = 300 Score = 100 bits (250), Expect = 2e-21 Identities = 70/202 (34%), Positives = 94/202 (46%), Gaps = 2/202 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 +T +V +TGA GIG Y+ +KL LVL LE +C G+ G + Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGL--GAKVHT 89 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 604 +D +NR + K V E G + ILVNN GV S T ++ EVN L Sbjct: 90 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149 Query: 605 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YP 778 TK LP M + G I+TV S G ++ P YC+SK A GF TL ELA Sbjct: 150 WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQIT 209 Query: 779 GITVSNVCPGPVKSNIVKNALT 844 G+ + +CP V + +KN T Sbjct: 210 GVKTTCLCPNFVNTGFIKNPST 231 >ref|NP_005516.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens] Length = 292 Score = 92.8 bits (229), Expect = 4e-19 Identities = 65/178 (36%), Positives = 94/178 (52%) Frame = +2 Query: 230 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 409 RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86 Query: 410 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 589 I D+ + VA L G +D+L+ N + + ++ MEVN Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143 Query: 590 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 763 +L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200 >ref|NP_861420.1| 11-beta-hydroxysteroid dehydrogenase 1 [Homo sapiens] Length = 292 Score = 92.8 bits (229), Expect = 4e-19 Identities = 65/178 (36%), Positives = 94/178 (52%) Frame = +2 Query: 230 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 409 RPE L V VTGAS GIG E+ Y L+K+G +V++AR + L++V CLE G Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 86 Query: 410 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 589 I D+ + VA L G +D+L+ N + + ++ MEVN Sbjct: 87 HYIAGTMEDM-TFAEQFVAQAGKL--MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 143 Query: 590 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 763 +L V LT LP M+++ G I+ V+S G +A P+ Y ASK AL GFF+++R E Sbjct: 144 FLSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKE 200 >ref|NP_056540.1| retinol dehydrogenase 8 (all-trans) [Homo sapiens] Length = 311 Score = 92.0 bits (227), Expect = 7e-19 Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 4/214 (1%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 430 V ++G SSGIG EL QL+ K +V + R + + E ++ G G+ + + Sbjct: 8 VLISGCSSGIGLELAVQLAHDPKKRYQVVATMRDLGKKETLEAAA---GEALGQTLTVAQ 64 Query: 431 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 610 LD+ + S + G++D+LVNN G+ SL + + + N+ G V L Sbjct: 65 LDVCSDESVAQCLSCIQ---GEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRL 121 Query: 611 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 790 K VLP M ++QG I+ ++S MG+ + Y ASK AL GFF +L +L + I + Sbjct: 122 VKAVLPGMKRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQF-NIFI 180 Query: 791 SNVCPGPVKSNIVKNALTE-EVTKTLGSDADQSH 889 S V PGPV + L + + + G+D + H Sbjct: 181 SLVEPGPVVTEFEGKLLAQVSMAEFPGTDPETLH 214 >ref|NP_835236.1| hydroxysteroid (17-beta) dehydrogenase 13 [Homo sapiens] Length = 300 Score = 92.0 bits (227), Expect = 7e-19 Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 2/198 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 436 +V +TGA GIG + Y+ +K LVL + +E C + G+ ++ D Sbjct: 38 IVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVV----D 93 Query: 437 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 +NR + V +E G + I+VNN G + + T + + EVN LG +TK Sbjct: 94 CSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITK 153 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 790 +LP M+E+ G I+TV S G P YC+SK A GF L +EL GI Sbjct: 154 ALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKT 213 Query: 791 SNVCPGPVKSNIVKNALT 844 S +CP V + KN T Sbjct: 214 SCLCPVFVNTGFTKNPST 231 >ref|NP_941995.1| short-chain dehydrogenase/reductase 10 isoform b [Homo sapiens] Length = 286 Score = 90.1 bits (222), Expect = 3e-18 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V +TGA++G+GEEL Y ++LG LVL+A L++V C + G K + + D+ Sbjct: 32 VLLTGANAGVGEELAYHYARLGSHLVLTAHTEALLQKVVGNCRKLGAPK---VFYIAADM 88 Query: 440 ANRSSHEVATKAVLQEFGKIDILVNN--GGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 A+ + E + L + G +D LV N GG + S + LM+VN++ V LT Sbjct: 89 ASPEAPESVVQFALDKLGGLDYLVLNHIGGAPAGTRA--RSPQATRWLMQVNFVSYVQLT 146 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 766 LP + + K G ++ V+S +G + S Y A+K AL GFF +LR EL Sbjct: 147 SRALPSLTDSK-GSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRREL 196 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,755,120 Number of Sequences: 39411 Number of extensions: 973174 Number of successful extensions: 2666 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2601 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3277934234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000715 (1028 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 490 e-140 Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris] 149 6e-36 Alignment gi|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Cani... 105 5e-23 Alignment gi|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Cani... 104 1e-22 Alignment gi|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Cani... 94 3e-19 Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 93 4e-19 Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 93 4e-19 Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 93 4e-19 Alignment gi|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (... 93 5e-19 Alignment gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia... 89 7e-18 >ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7 precursor (Retinal short-chain dehydrogenase/reductase 4) (retSDR4) [Canis familiaris] Length = 437 Score = 490 bits (1261), Expect(2) = e-140 Identities = 245/313 (78%), Positives = 264/313 (84%) Frame = +2 Query: 74 SPQSRACAAVMSWEXXXXXXXXXXXXXXXXXXXXXXXXDGDLTLLWAEWQGRRPEWELTD 253 SP SRA AA MSWE DGDLTLLWAEWQGRRPEWELTD Sbjct: 89 SPASRARAAAMSWELLLWLLALGALLALLVQLLRFVRADGDLTLLWAEWQGRRPEWELTD 148 Query: 254 MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 433 MV+WVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILK KDI +LPL Sbjct: 149 MVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKEKDIFVLPL 208 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 DL +RSSHE ATKAVLQEFGKIDILVNNGG SQRSLCVDT+LDV+KELME+NYLGTVSLT Sbjct: 209 DLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELNYLGTVSLT 268 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 793 CVLPHMIE+KQGKI+TVNS +GII+APLS GYCASKHALRGFFN LR ELA YPGI +S Sbjct: 269 MCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVELAEYPGIVIS 328 Query: 794 NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 973 N+CPGPV+SNIVKN+LTEEVTK++G D QSHKMATSRC RLMLI+MANDLKEVWIA+ P Sbjct: 329 NICPGPVQSNIVKNSLTEEVTKSVGIDTVQSHKMATSRCVRLMLISMANDLKEVWIADHP 388 Query: 974 FLSMAYLWHIYQP 1012 FL + YLW Y P Sbjct: 389 FLLVVYLWQ-YMP 400 Score = 28.1 bits (61), Expect(2) = e-140 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 1000 YIPTWAWWL 1026 Y+PTWAWWL Sbjct: 398 YMPTWAWWL 406 >ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris] Length = 325 Score = 149 bits (375), Expect = 6e-36 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 2/243 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDI-- 418 L + VV +TGA+SG+G E G LVL R + LE + + + K + Sbjct: 50 LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTKELTASPATKVQTHKP 109 Query: 419 LILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 598 ++ DLA+ + AT +LQ FG +D+L+NN G+S R VDT+ DV K++ME NY G Sbjct: 110 YMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETNYFG 169 Query: 599 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 778 V+LTK +LP MI+++QG I+ ++S G I+ P Y ASKHA + FF+ LR E+ Y Sbjct: 170 PVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMEQYE 229 Query: 779 GITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVW 958 I V+ + PG + +N+ NA+T + + D + + AR +L A+ K+V Sbjct: 230 -IEVTVISPGYIHTNLSLNAVTADGSTYGVMDKTTAQGRSPVEVARDVLAAVGKKKKDVI 288 Query: 959 IAE 967 +A+ Sbjct: 289 LAD 291 >ref|XP_536640.2| PREDICTED: similar to CG7601-PA isoform 1 [Canis familiaris] Length = 311 Score = 105 bits (263), Expect = 5e-23 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 421 VV +T A SG+G+E G LVL + + L+ L + ++ D Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93 Query: 422 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 598 ++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153 Query: 599 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 778 ++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212 Query: 779 GITVSNVCPGPVKS 820 + VS V P ++S Sbjct: 213 DVVVSTVSPTFIRS 226 >ref|XP_861006.1| PREDICTED: similar to CG7601-PA isoform 2 [Canis familiaris] Length = 317 Score = 104 bits (260), Expect = 1e-22 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 6/189 (3%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL----- 421 VV +T A SG+G+E G LVL + + L+ L + ++ D Sbjct: 39 VVVITDAISGLGKECARVFHTGGARLVLCGKNWERLQ-----ILYDALISVADPSKTFTP 93 Query: 422 -ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLG 598 ++ LDL++ S + K VL +G +DIL+NN + + SL++ K++M+ NY G Sbjct: 94 KLVLLDLSDISCVQDVAKEVLDCYGCVDILINNASMKVKGPAHKISLELDKKIMDANYFG 153 Query: 599 TVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 778 ++LTK +LP MI ++ G+I+ VN+ G + P Y ASKHA GFF+ LR E+ Y Sbjct: 154 PITLTKALLPDMISRRTGQIVLVNNIQGKLGIPFRTAYAASKHAALGFFDCLRAEVEEY- 212 Query: 779 GITVSNVCP 805 + VS V P Sbjct: 213 DVVVSTVSP 221 >ref|NP_001005756.1| 11-beta-hydroxysteroid dehydrogenase 1 [Canis familiaris] Length = 293 Score = 93.6 bits (231), Expect = 3e-19 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Frame = +2 Query: 230 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 409 RPE L V VTGAS GIGE++ Y L+K+G +V++AR + L++V CLE G Sbjct: 28 RPEM-LQGKKVIVTGASKGIGEQMAYHLAKMGAHVVVTARSKETLKKVVSHCLELGAASA 86 Query: 410 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 589 +P + + + E + G +D+L+ N + + + + MEVN Sbjct: 87 H---YIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNHITNTSMNLFSGDIHLVRRSMEVN 143 Query: 590 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE-L 766 +L V L+ LP M+++ G I+ V+S G +++PL Y ASK AL GFF+++R E Sbjct: 144 FLSYVVLSAAALP-MLKQSNGSIVVVSSKAGKMSSPLVAPYSASKFALDGFFSSVRMEHS 202 Query: 767 ATYPGITVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQ 883 T ++++ G + ++ A++ + T+G+ + + Sbjct: 203 VTKVNVSITLCILGLINTDTAMKAVS-GILSTVGASSKE 240 >ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1 [Canis familiaris] Length = 271 Score = 93.2 bits (230), Expect = 4e-19 Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 436 +V +TGA GIG Y+ +K LVL +E C + G + +D Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93 Query: 437 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 NR + K V +E G + ILVNN G + + T + + E+N LG +TK Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 790 +LP MI++ G I+TV S G P YC+SK A GF L EL T GI Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213 Query: 791 SNVCPGPVKSNIVKNALT 844 S +CP V + KN T Sbjct: 214 SCLCPVFVNTGFTKNPST 231 >ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13 isoform 2 [Canis familiaris] Length = 300 Score = 93.2 bits (230), Expect = 4e-19 Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 2/198 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 436 +V +TGA GIG Y+ +K LVL +E C + G + +D Sbjct: 38 IVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRK----LGATVHTFVVD 93 Query: 437 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 NR + K V +E G + ILVNN G + + T + + E+N LG +TK Sbjct: 94 CGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILGHFWITK 153 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELAT--YPGITV 790 +LP MI++ G I+TV S G P YC+SK A GF L EL T GI Sbjct: 154 ALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITGIKT 213 Query: 791 SNVCPGPVKSNIVKNALT 844 S +CP V + KN T Sbjct: 214 SCLCPVFVNTGFTKNPST 231 >ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8 [Canis familiaris] Length = 300 Score = 93.2 bits (230), Expect = 4e-19 Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 2/202 (0%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 +T +V +TGA GIG Y+ +KL LVL +E C G + Sbjct: 34 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAECRR----LGAKVHA 89 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 604 +D +NR + V E G + ILVNN GV S T ++ EVN L Sbjct: 90 FVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 149 Query: 605 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 778 TK LP M++ G I+TV S G P YC+SK A GF L ELA Sbjct: 150 WTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAALERT 209 Query: 779 GITVSNVCPGPVKSNIVKNALT 844 G+ + +CP + + +KNA T Sbjct: 210 GVKTTCLCPNFINTGFIKNAST 231 >ref|XP_854042.1| PREDICTED: similar to retinol dehydrogenase 8 (all-trans) [Canis familiaris] Length = 312 Score = 92.8 bits (229), Expect = 5e-19 Identities = 65/207 (31%), Positives = 105/207 (50%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V ++G SSGIG EL QL+ +++L + G G+ + + LD+ Sbjct: 8 VLISGCSSGIGLELAVQLAHDHRQRYRVVATMRDLGKKGTLETAAGEALGQTLTVAQLDV 67 Query: 440 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 619 + S VA + G++D+LVNN GV SL + +++ N+ G V L + Sbjct: 68 CSEES--VAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLAAMQNVLDTNFFGAVRLVRA 125 Query: 620 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 799 VLP M +++G I+ ++S MG+ + Y ASK AL GFF +L +L + I ++ V Sbjct: 126 VLPGMKRRRKGHIVVISSVMGLQGVVFNEIYAASKFALEGFFESLAVQLLQF-NIFITLV 184 Query: 800 CPGPVKSNIVKNALTEEVTKTLGSDAD 880 PGPV ++ + L E+V+ T D D Sbjct: 185 EPGPVATDF-EGKLLEQVSTTEFPDTD 210 >ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1 [Canis familiaris] Length = 509 Score = 89.0 bits (219), Expect = 7e-18 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 1/172 (0%) Frame = +2 Query: 266 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 445 VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D++ Sbjct: 144 VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQ 203 Query: 446 RSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKCV 622 S E K ++ G +D+LVN G+S D + ++ LM VNYLG+V ++ V Sbjct: 204 DYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAV 263 Query: 623 LPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYP 778 + M E++ G+I+ V+S G + Y +SK A+RG L+ E+ YP Sbjct: 264 ITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVEIYP 315 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,147,983 Number of Sequences: 33732 Number of extensions: 978264 Number of successful extensions: 2722 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2651 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 3750508006 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000715 (1028 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [... 384 e-106 Alignment gi|NP_663403.1| hypothetical protein LOC216820 [Mus musculus] 151 1e-36 Alignment gi|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus mus... 99 6e-21 Alignment gi|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus] 98 1e-20 Alignment gi|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus] 97 3e-20 Alignment gi|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [... 95 1e-19 Alignment gi|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus] 91 2e-18 Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 89 7e-18 Alignment gi|XP_203753.2| PREDICTED: follicular lymphoma variant transloc... 89 1e-17 Alignment gi|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine ... 89 1e-17 >ref|NP_079798.1| retinal short-chain dehydrogenase/reductase 4 [Mus musculus] Length = 288 Score = 384 bits (985), Expect(2) = e-106 Identities = 193/253 (76%), Positives = 218/253 (86%) Frame = +2 Query: 254 MVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPL 433 MVVWVTGASSGIGEEL +QLSKLGVSLVLSARR QELERVKRRCLENG LK KDIL+LPL Sbjct: 1 MVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPL 60 Query: 434 DLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLT 613 DL + SSHE ATKAVLQEFGKIDILVNNGG SQRSL ++T+LDV+KEL+ +NY+GTVSLT Sbjct: 61 DLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLT 120 Query: 614 KCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVS 793 KCVLPHMIE+KQGKI+TVNS GI + LS GYCASKHALRGFFN L +EL YPGIT Sbjct: 121 KCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFC 180 Query: 794 NVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIAEQP 973 NV PGPV+S+IVKNA TEEVTK++ ++ DQS+KM TSRC RLMLI+MANDLKEVWI++ P Sbjct: 181 NVYPGPVQSDIVKNAFTEEVTKSMRNNIDQSYKMPTSRCVRLMLISMANDLKEVWISDHP 240 Query: 974 FLSMAYLWHIYQP 1012 L AY+W Y P Sbjct: 241 VLLGAYIWQ-YMP 252 Score = 22.7 bits (47), Expect(2) = e-106 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +1 Query: 1000 YIPTWAWWL 1026 Y+PTWA WL Sbjct: 250 YMPTWAAWL 258 >ref|NP_663403.1| hypothetical protein LOC216820 [Mus musculus] Length = 323 Score = 151 bits (381), Expect = 1e-36 Identities = 84/241 (34%), Positives = 135/241 (56%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L + VV VTGA+SG+G E G LVL R V+ LE + R + + + Sbjct: 50 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 604 + DLA+ + A +LQ FG +D+L+NN G+S R DT +DV +++ME+NY G V Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169 Query: 605 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGI 784 +LTK +LP M+E+KQG I+ ++S G I+ P Y ASKHA + FF+ LR E+ I Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEE-ANI 228 Query: 785 TVSNVCPGPVKSNIVKNALTEEVTKTLGSDADQSHKMATSRCARLMLIAMANDLKEVWIA 964 V+ + PG + +N+ NA+T + ++ D + + + + A+ + A+ K+V + Sbjct: 229 KVTVISPGYIHTNLSVNAVTADGSRYGALDKNTAQGRSAAEVAQDVFDAVGKKKKDVLLT 288 Query: 965 E 967 + Sbjct: 289 D 289 >ref|NP_032314.1| hydroxysteroid 11-beta dehydrogenase 1 [Mus musculus] Length = 292 Score = 99.4 bits (246), Expect = 6e-21 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%) Frame = +2 Query: 230 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 409 RPE L V VTGAS GIG E+ Y LSK+G +VL+AR + L++V RCLE G Sbjct: 28 RPEM-LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASA 86 Query: 410 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCV-DTSLDVYKELMEV 586 I D+ V ++ G +D+L+ N ++Q SL + + + +MEV Sbjct: 87 HYIAGTMEDMTFAEQFIVKAGKLM---GGLDMLILN-HITQTSLSLFHDDIHSVRRVMEV 142 Query: 587 NYLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTEL 766 N+L V ++ LP M+++ G I ++S G + P+ Y ASK AL GFF+T+RTEL Sbjct: 143 NFLSYVVMSTAALP-MLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTEL 201 >ref|NP_001025461.1| retinol dehydrogenase 8 [Mus musculus] Length = 317 Score = 98.2 bits (243), Expect = 1e-20 Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 3/210 (1%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLS---KLGVSLVLSARRVQELERVKRRCLENGILKGKDILILP 430 V ++G SSGIG EL QL+ + +V + R + + E ++ G GK + ++ Sbjct: 8 VLISGCSSGIGLELALQLAHDPRQRYQVVATMRDLGKKEPLEAAA---GEALGKTLSVVQ 64 Query: 431 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 610 LD+ N S + E G++D+LVNN GV SL + + N+ G V L Sbjct: 65 LDVCNDESVTDCLSHI--EGGQVDVLVNNAGVGLVGPLEGLSLATMQSVFNTNFFGAVRL 122 Query: 611 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 790 K VLP M ++QG I+ V+S MG+ + Y ASK AL GFF +L +L + I + Sbjct: 123 VKAVLPGMKRRRQGHIVVVSSVMGLQGVMFNDVYAASKFALEGFFESLAIQLRQF-NIFI 181 Query: 791 SNVCPGPVKSNIVKNALTEEVTKTLGSDAD 880 S V PGPV ++ + L +V+K D D Sbjct: 182 SMVEPGPVTTDF-EGKLLAQVSKAEFPDTD 210 >ref|NP_001013031.1| hypothetical protein LOC68460 [Mus musculus] Length = 237 Score = 97.1 bits (240), Expect = 3e-20 Identities = 50/130 (38%), Positives = 78/130 (60%) Frame = +2 Query: 431 LDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSL 610 +DL++ S + K VL +G +DIL+NN V + SL++ K++M+ NY G ++L Sbjct: 24 VDLSDISCVQDVAKEVLDCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITL 83 Query: 611 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 790 TK +LP+MI ++ G+I+ VN+ P Y ASKHA+ GFF+ LR E+ Y + V Sbjct: 84 TKVLLPNMISRRTGQIVLVNNIQAKFGIPFRTAYAASKHAVMGFFDCLRAEVEEY-DVVV 142 Query: 791 SNVCPGPVKS 820 S V P ++S Sbjct: 143 STVSPTYIRS 152 >ref|NP_444492.1| dehydrogenase/reductase (SDR family) member 8 [Mus musculus] Length = 298 Score = 95.1 bits (235), Expect = 1e-19 Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 2/198 (1%) Frame = +2 Query: 257 VVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLD 436 +V +TGA GIG Y+ +KL LVL +E +C + G ++ D Sbjct: 38 IVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVV----D 93 Query: 437 LANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 + R A K V +E G + ILVNN GV + T ++ EVN L TK Sbjct: 94 CSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQIEKTFEVNVLAHFWTTK 153 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--PGITV 790 LP M++ G I+TV S G P YC+SK A GF L ELA G+ Sbjct: 154 AFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGRTGVRT 213 Query: 791 SNVCPGPVKSNIVKNALT 844 S +CP + + +KN T Sbjct: 214 SCLCPNFINTGFIKNPST 231 >ref|NP_932147.1| alcohol dehydrogenase PAN1B-like [Mus musculus] Length = 304 Score = 90.9 bits (224), Expect = 2e-18 Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 10/217 (4%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 +T V +TGA GIG Y+ +K LVL + +E +C + G + + + Sbjct: 34 VTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV----VHV 89 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 604 +D +NR+ + V +E G ++I+VNN G + + + + EVN LG Sbjct: 90 FVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNILGHF 149 Query: 605 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 778 + K +LP M+ + G I+TV S G P YC+SK A GF L EL T Sbjct: 150 WIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKT 209 Query: 779 GITVSNVCPGPVKSNIVKNALT--------EEVTKTL 865 GI S +CP V + KN T EEV ++L Sbjct: 210 GIKTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSL 246 >ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus musculus] Length = 318 Score = 89.0 bits (219), Expect = 7e-18 Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 3/191 (1%) Frame = +2 Query: 245 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 424 L D V++TG SG G L QL + G+ ++ + R+ + E ++R+ E + Sbjct: 27 LQDKYVFITGCGSGFGNLLARQLDRRGMRVLAACRKEEGAEELRRKTSER-------LET 79 Query: 425 LPLDLANRSSHEVATKAVLQEFGKIDI--LVNNGGVSQRSLCVD-TSLDVYKELMEVNYL 595 + LD+ S AT+ V + G + LVNN G+S S + + +++VN L Sbjct: 80 VILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLL 139 Query: 596 GTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY 775 G + +T +LP ++ K +G+++ V+S +G ++ SGGYC SK+ + F ++LR EL Y Sbjct: 140 GLIEVTLSMLP-LVRKARGRVVNVSSILGRVSLGGSGGYCISKYGIEAFSDSLRREL-RY 197 Query: 776 PGITVSNVCPG 808 G+ V+ + PG Sbjct: 198 FGVKVAIIEPG 208 >ref|XP_203753.2| PREDICTED: follicular lymphoma variant translocation 1 isoform 1 [Mus musculus] Length = 332 Score = 88.6 bits (218), Expect = 1e-17 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+ Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94 Query: 440 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 + + E K ++ G +D+LVN G S + + +++LM +NYLG+V ++ Sbjct: 95 SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 775 V+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ Y Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214 Query: 776 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 886 PG+ N +C P V IVK+A+ ++GSD Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271 Query: 887 HKMATSRCARLMLIAMANDLKEV 955 + +++ C + ++ L++V Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294 >ref|XP_915916.1| PREDICTED: similar to 3-ketodihydrosphingosine reductase precursor (3-dehydrosphinganine reductase) (KDS reductase) (Follicular variant translocation protein 1) (FVT-1) isoform 4 [Mus musculus] Length = 332 Score = 88.6 bits (218), Expect = 1e-17 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 31/263 (11%) Frame = +2 Query: 260 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 439 V VTG SSGIG+ + + K G + L AR +L + K+ ++ I + +L + +D+ Sbjct: 35 VVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDV 94 Query: 440 ANRSSH-EVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTK 616 + + E K ++ G +D+LVN G S + + +++LM +NYLG+V ++ Sbjct: 95 SQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSR 154 Query: 617 CVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY------- 775 V+ M E++ G+I+ V+S G + Y +SK A+RG L+ E+ Y Sbjct: 155 AVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVA 214 Query: 776 -------PGITVSN---------------VC-PGPVKSNIVKNALTEEVTKTLGSDADQS 886 PG+ N +C P V IVK+A+ ++GSD Sbjct: 215 YPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSD---G 271 Query: 887 HKMATSRCARLMLIAMANDLKEV 955 + +++ C + ++ L++V Sbjct: 272 YMLSSLTCGMAPVTSITEGLQQV 294 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,298,426 Number of Sequences: 45328 Number of extensions: 1132853 Number of successful extensions: 3217 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3149 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 4059035974 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)