Animal-Genome cDNA 20060611C-000841


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-000841
         (954 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 897,799
Number of Sequences: 1040
Number of extensions: 23766
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 85089600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-000841
         (954 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_878074.1| PREDICTED: similar to minichromosome maintenanc...   253   1e-67
Alignment   gi|XP_869445.1| PREDICTED: similar to minichromosome maintenanc...   253   1e-67
Alignment   gi|XP_877890.1| PREDICTED: similar to minichromosome maintenanc...   253   1e-67
Alignment   gi|XP_587221.2| PREDICTED: similar to minichromosome maintenanc...   253   1e-67
Alignment   gi|XP_877686.1| PREDICTED: similar to minichromosome maintenanc...   253   1e-67
Alignment   gi|XP_583503.2| PREDICTED: similar to DNA replication licensing...   240   1e-63
Alignment   gi|XP_872641.1| PREDICTED: similar to DNA replication licensing...   238   7e-63
Alignment   gi|XP_580477.2| PREDICTED: similar to minichromosome maintenanc...   238   7e-63
Alignment   gi|XP_595989.2| PREDICTED: similar to DNA replication licensing...   225   3e-59
Alignment   gi|XP_584128.2| PREDICTED: similar to minichromosome maintenanc...   191   7e-49

>ref|XP_878074.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 6
            [Bos taurus]
          Length = 825

 Score =  253 bits (647), Expect = 1e-67
 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 399  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 458

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 459  VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 518

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 519  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 578

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677
            RFD+L +++D  D   D  LA+ +  V  H R  P+                     EPL
Sbjct: 579  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 636

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++R+YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 637  PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 695

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 696  EAHARMHLRDYVMEDDVNMAI 716


>ref|XP_869445.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 3
            [Bos taurus]
          Length = 831

 Score =  253 bits (647), Expect = 1e-67
 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 405  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 464

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 465  VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 524

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 525  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 584

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677
            RFD+L +++D  D   D  LA+ +  V  H R  P+                     EPL
Sbjct: 585  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 642

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++R+YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 643  PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 701

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 702  EAHARMHLRDYVMEDDVNMAI 722


>ref|XP_877890.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 5
            [Bos taurus]
          Length = 831

 Score =  253 bits (647), Expect = 1e-67
 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 405  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 464

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 465  VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 524

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 525  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 584

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677
            RFD+L +++D  D   D  LA+ +  V  H R  P+                     EPL
Sbjct: 585  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 642

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++R+YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 643  PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 701

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 702  EAHARMHLRDYVMEDDVNMAI 722


>ref|XP_587221.2| PREDICTED: similar to minichromosome maintenance protein 2 isoform 1
            [Bos taurus]
          Length = 825

 Score =  253 bits (647), Expect = 1e-67
 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 399  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 458

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 459  VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 518

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 519  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 578

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677
            RFD+L +++D  D   D  LA+ +  V  H R  P+                     EPL
Sbjct: 579  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 636

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++R+YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 637  PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 695

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 696  EAHARMHLRDYVMEDDVNMAI 716


>ref|XP_877686.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 4
            [Bos taurus]
          Length = 834

 Score =  253 bits (647), Expect = 1e-67
 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 408  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 467

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 468  VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 527

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 528  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 587

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677
            RFD+L +++D  D   D  LA+ +  V  H R  P+                     EPL
Sbjct: 588  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 645

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++R+YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 646  PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 704

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 705  EAHARMHLRDYVMEDDVNMAI 725


>ref|XP_583503.2| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46
            homolog) (P1-CDC46) [Bos taurus]
          Length = 734

 Score =  240 bits (612), Expect = 1e-63
 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            ++ SIAP I+G  D+KKA           + P G+  RG+IN+ ++GDPG AKSQLL ++
Sbjct: 335  ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 394

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            ++ +P   YT+G+GSS  GLTA+V+RD  S    +EGGA+VLAD GV CIDEFDKM E D
Sbjct: 395  EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 454

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN  +GR++  +  E NI     +LSR
Sbjct: 455  RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 513

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731
            FD++++++D  + + D+ LA+H+  +H  +  Q  A    +D+  ++++IA CR K  P 
Sbjct: 514  FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQAQAVEGEIDLAKLKKFIAYCRAKCGPR 573

Query: 732  VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893
            +    A+ +   Y+ MR  A    +D+   S+     R L AI+R++ AL+++++     
Sbjct: 574  LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 633

Query: 894  KEDVNEAI 917
            + DV EA+
Sbjct: 634  EADVEEAL 641


>ref|XP_872641.1| PREDICTED: similar to DNA replication licensing factor MCM4 (CDC21
           homolog) (P1-CDC21) [Bos taurus]
          Length = 509

 Score =  238 bits (606), Expect = 7e-63
 Identities = 132/257 (51%), Positives = 172/257 (66%), Gaps = 3/257 (1%)
 Frame = +3

Query: 18  KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
           +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 112 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 171

Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D GVCCIDEFDKM 
Sbjct: 172 QYVHNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGVCCIDEFDKMN 231

Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
           E+ R+ +HEVMEQQT+SIAKAGI+  LNAR SILAAANP   ++NP+++  +NIQLP  L
Sbjct: 232 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPIESQWNPKKTTIENIQLPHTL 291

Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
           LSRFDL++L+ D  D   D RLA H+  ++  S +  AQ E +DM ++R YIA       
Sbjct: 292 LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-EAQEEGMDMAVLRDYIAYAHS--- 347

Query: 729 TVPESLADYITAAYVEM 779
           TV   L+   + A +E+
Sbjct: 348 TVMPRLSQDASQALIEV 364


>ref|XP_580477.2| PREDICTED: similar to minichromosome maintenance protein 4 [Bos
            taurus]
          Length = 793

 Score =  238 bits (606), Expect = 7e-63
 Identities = 132/257 (51%), Positives = 172/257 (66%), Gaps = 3/257 (1%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
            +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 387  RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 446

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
             Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D GVCCIDEFDKM 
Sbjct: 447  QYVHNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGVCCIDEFDKMN 506

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            E+ R+ +HEVMEQQT+SIAKAGI+  LNAR SILAAANP   ++NP+++  +NIQLP  L
Sbjct: 507  ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPIESQWNPKKTTIENIQLPHTL 566

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDL++L+ D  D   D RLA H+  ++  S +  AQ E +DM ++R YIA       
Sbjct: 567  LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-EAQEEGMDMAVLRDYIAYAHS--- 622

Query: 729  TVPESLADYITAAYVEM 779
            TV   L+   + A +E+
Sbjct: 623  TVMPRLSQDASQALIEV 639


>ref|XP_595989.2| PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM)
            [Bos taurus]
          Length = 601

 Score =  225 bits (574), Expect = 3e-59
 Identities = 127/305 (41%), Positives = 185/305 (60%), Gaps = 7/305 (2%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197
            L  S+ P I+G+++VK+           ++   G  +RG+IN+C++GDP  AKSQ L ++
Sbjct: 184  LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 243

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            +  +PR+ YT+G+ SS  GLTAAV+RD  S E  +E GAL+LAD GVCCID  DKM   D
Sbjct: 244  EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDAPDKMDVRD 303

Query: 378  RTAIHEVMEQQTISIAKA----GILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAA 545
            + AIHE MEQQTISI  +     IL TLNAR SILAAANP  G Y+  +SL+QNI L A 
Sbjct: 304  QVAIHEAMEQQTISITSSLSFYFILATLNARTSILAAANPISGHYDRSKSLKQNINLSAP 363

Query: 546  LLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQ 725
            ++SRFDL +++ D  +   D  +A+ I  V  HSR   +      +  +RRY+   R+ +
Sbjct: 364  IMSRFDLFFILVDECNEVTDYAIARRI--VDLHSRIEDSIDRVYSLDEIRRYLLFARQFK 421

Query: 726  PTVPESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKE 899
            P + +   D+I   Y  +R+   +  +K +   + R L +++RLS A+AR+   D V+ +
Sbjct: 422  PKISKESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPK 481

Query: 900  DVNEA 914
             V EA
Sbjct: 482  HVKEA 486


>ref|XP_584128.2| PREDICTED: similar to minichromosome maintenance protein 8 isoform 1
            isoform 1 [Bos taurus]
          Length = 804

 Score =  191 bits (485), Expect = 7e-49
 Identities = 116/336 (34%), Positives = 184/336 (54%), Gaps = 40/336 (11%)
 Frame = +3

Query: 30   SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            S+ P I+GHE VK     A         D   R + IRG+ ++ ++GDPG+ KSQ+L  +
Sbjct: 373  SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHVLVVGDPGLGKSQMLQAV 431

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
              +APR  Y  G  ++  GLT  + +DS SG+  LE GALVL DQG+C IDEFDKM    
Sbjct: 432  CSVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 490

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
              A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP  G YN  +++ +N+++ +ALLSR
Sbjct: 491  HQALLEAMEQQSISLAKAGMVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 550

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653
            FDL++++ D P+ D+D  L++H+  +    ++                            
Sbjct: 551  FDLVFILLDTPNEDHDHLLSEHVIAIRAGKQRAVSSATVARMNSQDSNTSILEVVSDKPL 610

Query: 654  -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809
                   P    +P+  +L+R+YI   R+   P +    A  +   Y+E+R+++     +
Sbjct: 611  SERLKVVPGETIDPIPHQLLRKYIGYSRQYVYPRLSTEAAQILQNFYLELRKQSQRLSSS 670

Query: 810  TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
              T+ R L +++RL+ A ARL + +   KED  + +
Sbjct: 671  PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 705


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,396,544
Number of Sequences: 33508
Number of extensions: 979783
Number of successful extensions: 4915
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4883
length of database: 16,112,626
effective HSP length: 101
effective length of database: 12,728,318
effective search space used: 2749316688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-000841
         (954 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005907.3| minichromosome maintenance protein 7 isoform 1 ...   563   e-162
Alignment   gi|NP_877577.1| minichromosome maintenance protein 7 isoform 2 ...   563   e-162
Alignment   gi|NP_005905.2| minichromosome maintenance protein 4 [Homo sapi...   258   4e-69
Alignment   gi|NP_877423.1| minichromosome maintenance protein 4 [Homo sapi...   258   4e-69
Alignment   gi|NP_002379.2| minichromosome maintenance protein 3 [Homo sapi...   251   6e-67
Alignment   gi|NP_004517.2| minichromosome maintenance protein 2 [Homo sapi...   251   6e-67
Alignment   gi|NP_005906.2| minichromosome maintenance protein 6 [Homo sapi...   241   5e-64
Alignment   gi|NP_006730.2| minichromosome maintenance deficient protein 5 ...   239   2e-63
Alignment   gi|NP_877954.1| minichromosome maintenance protein 8 isoform 2 ...   188   7e-48
Alignment   gi|NP_115874.3| minichromosome maintenance protein 8 isoform 1 ...   188   7e-48

>ref|NP_005907.3| minichromosome maintenance protein 7 isoform 1 [Homo sapiens]
          Length = 719

 Score =  563 bits (1452), Expect(2) = e-162
 Identities = 289/303 (95%), Positives = 290/303 (95%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSPRGMKIRGNINICLMGDPGVAKSQLL
Sbjct: 332  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 391

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 392  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL
Sbjct: 452  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 511

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPP+QFEPLDMKLMRRYIAMCREKQP
Sbjct: 512  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQFEPLDMKLMRRYIAMCREKQP 571

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
             VPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN
Sbjct: 572  MVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDVVEKEDVN 631

Query: 909  EAI 917
            EAI
Sbjct: 632  EAI 634



 Score = 26.6 bits (57), Expect(2) = e-162
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 635 RLMEMSKDSLLG 646


>ref|NP_877577.1| minichromosome maintenance protein 7 isoform 2 [Homo sapiens]
          Length = 543

 Score =  563 bits (1452), Expect(2) = e-162
 Identities = 289/303 (95%), Positives = 290/303 (95%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSPRGMKIRGNINICLMGDPGVAKSQLL
Sbjct: 156  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 215

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 216  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 275

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL
Sbjct: 276  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 335

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPP+QFEPLDMKLMRRYIAMCREKQP
Sbjct: 336  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQFEPLDMKLMRRYIAMCREKQP 395

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
             VPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN
Sbjct: 396  MVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDVVEKEDVN 455

Query: 909  EAI 917
            EAI
Sbjct: 456  EAI 458



 Score = 26.6 bits (57), Expect(2) = e-162
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 459 RLMEMSKDSLLG 470


>ref|NP_005905.2| minichromosome maintenance protein 4 [Homo sapiens]
          Length = 863

 Score =  258 bits (660), Expect = 4e-69
 Identities = 145/303 (47%), Positives = 199/303 (65%), Gaps = 4/303 (1%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
            +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 461  RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 520

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
             Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D G+CCIDEFDKM 
Sbjct: 521  QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 580

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            E+ R+ +HEVMEQQT+SIAKAGI+  LNAR S+LAAANP   ++NP+++  +NIQLP  L
Sbjct: 581  ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 640

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725
            LSRFDL++L+ D  D   D RLA H+  ++  S +  A+ E LDM +++ YIA       
Sbjct: 641  LSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEE-QAEEELLDMAVLKDYIAYAHSTIM 699

Query: 726  PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905
            P + E  +  +  AYV+MR+   +S+       R L +++RL+ A A++R+ + VE  DV
Sbjct: 700  PRLSEEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDV 758

Query: 906  NEA 914
             EA
Sbjct: 759  EEA 761


>ref|NP_877423.1| minichromosome maintenance protein 4 [Homo sapiens]
          Length = 863

 Score =  258 bits (660), Expect = 4e-69
 Identities = 145/303 (47%), Positives = 199/303 (65%), Gaps = 4/303 (1%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
            +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 461  RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 520

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
             Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D G+CCIDEFDKM 
Sbjct: 521  QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 580

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            E+ R+ +HEVMEQQT+SIAKAGI+  LNAR S+LAAANP   ++NP+++  +NIQLP  L
Sbjct: 581  ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 640

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725
            LSRFDL++L+ D  D   D RLA H+  ++  S +  A+ E LDM +++ YIA       
Sbjct: 641  LSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEE-QAEEELLDMAVLKDYIAYAHSTIM 699

Query: 726  PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905
            P + E  +  +  AYV+MR+   +S+       R L +++RL+ A A++R+ + VE  DV
Sbjct: 700  PRLSEEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDV 758

Query: 906  NEA 914
             EA
Sbjct: 759  EEA 761


>ref|NP_002379.2| minichromosome maintenance protein 3 [Homo sapiens]
          Length = 808

 Score =  251 bits (641), Expect = 6e-67
 Identities = 153/349 (43%), Positives = 203/349 (58%), Gaps = 49/349 (14%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194
            +LA S+AP I+GH+ VKKA         ++    G  IRG+INI L+GDP VAKSQLL Y
Sbjct: 298  QLAKSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRY 357

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +   APR+  TTGRGSSGVGLTAAV  D  +GE  LE GA+VLAD+GV CIDEFDKM++ 
Sbjct: 358  VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 417

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRTAIHEVMEQ  ++IAKAGI   LNARCS+LAAANP YGRY+  ++  +NI L  +LLS
Sbjct: 418  DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 477

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVH------------------------------QH 644
            RFDLL+++ D+ D + D  ++ H+  +H                              Q 
Sbjct: 478  RFDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPNFSQE 537

Query: 645  SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779
             +Q    +E  D  L               M++YI + +  +P + +  A YI   Y  +
Sbjct: 538  DQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRL 597

Query: 780  RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
            R +   S D   TS   ARTL  ++RL+TA A+ RM  TV+ +D  EA+
Sbjct: 598  RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 646


>ref|NP_004517.2| minichromosome maintenance protein 2 [Homo sapiens]
          Length = 904

 Score =  251 bits (641), Expect = 6e-67
 Identities = 141/321 (43%), Positives = 206/321 (64%), Gaps = 21/321 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 476  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 535

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            I++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 536  IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 595

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 596  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 655

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHI--TYVHQH------------SRQPPAQ-----FEPL 677
            RFD+L +++D  D   D  LA+ +  ++V  H            S   PA       EPL
Sbjct: 656  RFDILCVVRDTVDPVQDEMLARFVVGSHVRHHPSNKEEEGLANGSAAEPAMPNTYGVEPL 715

Query: 678  DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854
              +++++YI   +E+  P + +   D +   Y ++R+E+ A+     T  R + +++R++
Sbjct: 716  PQEVLKKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 774

Query: 855  TALARLRMVDTVEKEDVNEAI 917
             A AR+ + D V ++DVN AI
Sbjct: 775  EAHARIHLRDYVIEDDVNMAI 795


>ref|NP_005906.2| minichromosome maintenance protein 6 [Homo sapiens]
          Length = 821

 Score =  241 bits (616), Expect = 5e-64
 Identities = 129/301 (42%), Positives = 188/301 (62%), Gaps = 3/301 (0%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197
            L  S+ P I+G+++VK+           ++   G  +RG+IN+C++GDP  AKSQ L ++
Sbjct: 350  LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 409

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            +  +PR+ YT+G+ SS  GLTAAV+RD  S E  +E GAL+LAD GVCCIDEFDKM   D
Sbjct: 410  EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRD 469

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            + AIHE MEQQTISI KAG+  TLNAR SILAAANP  G Y+  +SL+QNI L A ++SR
Sbjct: 470  QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSR 529

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737
            FDL +++ D  +   D  +A+ I  +H    +   +   LD   +RRY+   R+ +P + 
Sbjct: 530  FDLFFILVDECNEVTDYAIARRIVDLHSRIEESIDRVYSLDD--IRRYLLFARQFKPKIS 587

Query: 738  ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911
            +   D+I   Y  +R+   +  +K +   + R L +++RLS A+AR+   D V+ + V E
Sbjct: 588  KESEDFIVEQYKHLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKE 647

Query: 912  A 914
            A
Sbjct: 648  A 648


>ref|NP_006730.2| minichromosome maintenance deficient protein 5 [Homo sapiens]
          Length = 734

 Score =  239 bits (611), Expect = 2e-63
 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            ++ SIAP I+G  D+KKA           + P G+  RG+IN+ ++GDPG AKSQLL ++
Sbjct: 335  ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 394

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            ++ +P   YT+G+GSS  GLTA+V+RD  S    +EGGA+VLAD GV CIDEFDKM E D
Sbjct: 395  EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 454

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN  +GR++  +  E NI     +LSR
Sbjct: 455  RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 513

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731
            FD++++++D  + + D+ LA+H+  +H  +  Q  A    +D+  ++++IA CR K  P 
Sbjct: 514  FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQTQAVEGEIDLAKLKKFIAYCRVKCGPR 573

Query: 732  VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893
            +    A+ +   Y+ MR  A    +D+   S+     R L AI+R++ AL+++++     
Sbjct: 574  LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 633

Query: 894  KEDVNEAI 917
            + DV EA+
Sbjct: 634  EADVEEAL 641


>ref|NP_877954.1| minichromosome maintenance protein 8 isoform 2 [Homo sapiens]
          Length = 824

 Score =  188 bits (477), Expect = 7e-48
 Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 40/336 (11%)
 Frame = +3

Query: 30   SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            S+ P I+GHE VK     A         D   R + IRG+ +I ++GDPG+ KSQ+L   
Sbjct: 393  SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHILVVGDPGLGKSQMLQAA 451

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
              +APR  Y  G  ++  GLT  + +DS SG+  LE GALVL DQG+C IDEFDKM    
Sbjct: 452  CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 510

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
              A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP  G YN  +++ +N+++ +ALLSR
Sbjct: 511  HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 570

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653
            FDL++++ D P+  +D  L++H+  +    ++                            
Sbjct: 571  FDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSATVARMNSQDSNTSVLEVVSEKPL 630

Query: 654  -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809
                   P    +P+  +L+R+YI   R+   P +    A  +   Y+E+R+++     +
Sbjct: 631  SERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS 690

Query: 810  TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
              T+ R L +++RL+ A ARL + +   KED  + +
Sbjct: 691  PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 725


>ref|NP_115874.3| minichromosome maintenance protein 8 isoform 1 [Homo sapiens]
          Length = 840

 Score =  188 bits (477), Expect = 7e-48
 Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 40/336 (11%)
 Frame = +3

Query: 30   SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            S+ P I+GHE VK     A         D   R + IRG+ +I ++GDPG+ KSQ+L   
Sbjct: 409  SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHILVVGDPGLGKSQMLQAA 467

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
              +APR  Y  G  ++  GLT  + +DS SG+  LE GALVL DQG+C IDEFDKM    
Sbjct: 468  CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 526

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
              A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP  G YN  +++ +N+++ +ALLSR
Sbjct: 527  HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 586

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653
            FDL++++ D P+  +D  L++H+  +    ++                            
Sbjct: 587  FDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSATVARMNSQDSNTSVLEVVSEKPL 646

Query: 654  -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809
                   P    +P+  +L+R+YI   R+   P +    A  +   Y+E+R+++     +
Sbjct: 647  SERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS 706

Query: 810  TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
              T+ R L +++RL+ A ARL + +   KED  + +
Sbjct: 707  PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 741


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,422,465
Number of Sequences: 39411
Number of extensions: 1181920
Number of successful extensions: 6443
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6400
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 2957242655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-000841
         (954 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536865.2| PREDICTED: similar to DNA replication licensing...   568   e-163
Alignment   gi|XP_859866.1| PREDICTED: similar to DNA replication licensing...   568   e-163
Alignment   gi|XP_849809.1| PREDICTED: similar to DNA replication licensing...   568   e-163
Alignment   gi|XP_535063.2| PREDICTED: similar to minichromosome maintenanc...   254   9e-68
Alignment   gi|XP_538960.2| PREDICTED: similar to DNA replication licensing...   251   6e-67
Alignment   gi|XP_541736.2| PREDICTED: similar to minichromosome maintenanc...   250   1e-66
Alignment   gi|XP_533338.2| PREDICTED: similar to DNA replication licensing...   241   1e-63
Alignment   gi|XP_853134.1| PREDICTED: similar to DNA replication licensing...   239   3e-63
Alignment   gi|XP_541221.2| PREDICTED: similar to minichromosome maintenanc...   213   2e-55
Alignment   gi|XP_860384.1| PREDICTED: similar to minichromosome maintenanc...   188   8e-48

>ref|XP_536865.2| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 1 [Canis familiaris]
          Length = 733

 Score =  568 bits (1463), Expect(2) = e-163
 Identities = 291/303 (96%), Positives = 292/303 (96%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSPRGMKIRGNINICLMGDPGVAKSQLL
Sbjct: 346  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 405

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 406  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 465

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL
Sbjct: 466  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 525

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP
Sbjct: 526  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 585

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
            TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN
Sbjct: 586  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 645

Query: 909  EAI 917
            EAI
Sbjct: 646  EAI 648



 Score = 26.6 bits (57), Expect(2) = e-163
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 649 RLMEMSKDSLLG 660


>ref|XP_859866.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 5 [Canis familiaris]
          Length = 724

 Score =  568 bits (1463), Expect(2) = e-163
 Identities = 291/303 (96%), Positives = 292/303 (96%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSPRGMKIRGNINICLMGDPGVAKSQLL
Sbjct: 337  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 396

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 397  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 456

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL
Sbjct: 457  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 516

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP
Sbjct: 517  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 576

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
            TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN
Sbjct: 577  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 636

Query: 909  EAI 917
            EAI
Sbjct: 637  EAI 639



 Score = 26.6 bits (57), Expect(2) = e-163
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 640 RLMEMSKDSLLG 651


>ref|XP_849809.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 3 [Canis familiaris]
          Length = 719

 Score =  568 bits (1463), Expect(2) = e-163
 Identities = 291/303 (96%), Positives = 292/303 (96%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSPRGMKIRGNINICLMGDPGVAKSQLL
Sbjct: 332  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 391

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 392  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL
Sbjct: 452  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 511

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP
Sbjct: 512  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 571

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
            TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN
Sbjct: 572  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 631

Query: 909  EAI 917
            EAI
Sbjct: 632  EAI 634



 Score = 26.6 bits (57), Expect(2) = e-163
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 635 RLMEMSKDSLLG 646


>ref|XP_535063.2| PREDICTED: similar to minichromosome maintenance protein 4 [Canis
            familiaris]
          Length = 929

 Score =  254 bits (649), Expect = 9e-68
 Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 4/303 (1%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
            +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 527  RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 586

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
             Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D G+CCIDEFDKM 
Sbjct: 587  QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 646

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            E+ R+ +HEVMEQQT+SIAKAGI+  LNAR SILAAANP   ++NP+++  +NIQLP  L
Sbjct: 647  ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVESQWNPKKTTIENIQLPHTL 706

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725
            LSRFDL++L+ D  D   D RLA H+  ++  S +   + E +DM +++ YIA       
Sbjct: 707  LSRFDLIFLMLDPQDEAYDRRLAHHLVALYYRSEEQMEE-EFMDMAVLKDYIAYAHSMVM 765

Query: 726  PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905
            P + +  +  +  AYV+MR+   +S+       R L +++RL+ A A++R    VE  DV
Sbjct: 766  PRLSQEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRFSSKVEAVDV 824

Query: 906  NEA 914
             EA
Sbjct: 825  EEA 827


>ref|XP_538960.2| PREDICTED: similar to DNA replication licensing factor MCM3 (DNA
            polymerase alpha holoenzyme-associated protein P1) (RLF
            beta subunit) (P102 protein) (P1-MCM3) [Canis familiaris]
          Length = 916

 Score =  251 bits (642), Expect = 6e-67
 Identities = 154/349 (44%), Positives = 203/349 (58%), Gaps = 49/349 (14%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194
            +LA S+AP I+GH+ VKKA         ++    G  IRG+INI L+GDP VAKSQLL Y
Sbjct: 406  QLARSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRY 465

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +   APR+  TTGRGSSGVGLTAAV  D  +GE  LE GA+VLAD+GV CIDEFDKM++ 
Sbjct: 466  VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 525

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRTAIHEVMEQ  ++IAKAGI   LNARCS+LAAANP YGRY+  ++  +NI L  +LLS
Sbjct: 526  DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 585

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVH------------------------------QH 644
            RFDLL+++ D+ D + D  ++ H+  +H                              Q 
Sbjct: 586  RFDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPDFNQE 645

Query: 645  SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779
             +Q    +E  D  L               MR+YI + +  +P + +  A YI   Y  +
Sbjct: 646  DQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMRKYIHVAKIIKPILTQESAAYIAEEYSRL 705

Query: 780  RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
            R +   S D   TS   ARTL  ++RL+TA A+ RM  TV+ +D  EA+
Sbjct: 706  RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 754


>ref|XP_541736.2| PREDICTED: similar to minichromosome maintenance protein 2 [Canis
            familiaris]
          Length = 1001

 Score =  250 bits (639), Expect = 1e-66
 Identities = 141/320 (44%), Positives = 205/320 (64%), Gaps = 20/320 (6%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 574  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 633

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            I++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 634  IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 693

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+I+AAANP  GRY+P  +   N+ L   ++S
Sbjct: 694  DRTSIHEAMEQQSISISKAGIVTSLQARCTIIAAANPIGGRYDPSLTFSDNVDLTEPIIS 753

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHI--TYVHQH-----------SRQPPAQ-----FEPLD 680
            RFD+L +++D  D   D  LA+ +  +++  H             Q PA       EPL 
Sbjct: 754  RFDVLCVVRDTVDPVQDEMLARFVVGSHIRHHPSNKEEGLGSSGTQEPAMPNTYGVEPLP 813

Query: 681  MKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLST 857
             +++++YI   +EK  P + +   D +   Y ++R+E+ A+     T  R + +++R++ 
Sbjct: 814  QEVLKKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMAE 872

Query: 858  ALARLRMVDTVEKEDVNEAI 917
            A AR+ + D V ++DV+ AI
Sbjct: 873  AHARIHLRDYVIEDDVSMAI 892


>ref|XP_533338.2| PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM)
            [Canis familiaris]
          Length = 955

 Score =  241 bits (614), Expect = 1e-63
 Identities = 130/301 (43%), Positives = 188/301 (62%), Gaps = 3/301 (0%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197
            L  S+ P I+G+++VK+           ++   G  +RG+IN+C++GDP  AKSQ L ++
Sbjct: 484  LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 543

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            +  +PR+ YT+G+ SS  GLTAAV+RD  S E  +E GAL+LAD GVCCIDEFDKM   D
Sbjct: 544  EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRD 603

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            + AIHE MEQQTISI KAG+  TLNAR SILAAANP  G Y+  +SL+QNI L A ++SR
Sbjct: 604  QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSR 663

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737
            FDL +++ D  +   D  +A+ I  V  HSR   +      +  +RRY+   R+ +P + 
Sbjct: 664  FDLFFILVDECNEVTDYAIARRI--VDLHSRIEDSIDRVYSLDDIRRYLLFARQFKPKIS 721

Query: 738  ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911
            +   D+I   Y  +R+   +  +K +   + R L +++RLS A+AR+   D V+ + V E
Sbjct: 722  KESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKE 781

Query: 912  A 914
            A
Sbjct: 782  A 782


>ref|XP_853134.1| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46
            homolog) (P1-CDC46) [Canis familiaris]
          Length = 634

 Score =  239 bits (610), Expect = 3e-63
 Identities = 134/308 (43%), Positives = 197/308 (63%), Gaps = 9/308 (2%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            ++ SIAP I+G  D+KKA           + P G+  RG+IN+ ++GDPG AKSQLL ++
Sbjct: 235  ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 294

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            ++ +P   YT+G+GSS  GLTA+V+RD  S    +EGGA+VLAD GV CIDEFDKM E D
Sbjct: 295  EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 354

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN  +GR++  +  E NI     +LSR
Sbjct: 355  RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 413

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731
            FD++++++D  + + D+ LA+H+  +H  +  Q  A    +D+  ++++IA CR K  P 
Sbjct: 414  FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQTQAVEGEVDLTKLKKFIAYCRAKCGPR 473

Query: 732  VPESLADYITAAYVEMRREA-WASKDATYTS-----ARTLLAILRLSTALARLRMVDTVE 893
            +    A+ +   Y+ MR  A    +D+   S      R L AI+R++ AL+++++     
Sbjct: 474  LSAEAAEKLKNRYIIMRSGARQHERDSDRRSNIPITVRQLEAIVRIAEALSKMKLQPFAT 533

Query: 894  KEDVNEAI 917
            + DV EA+
Sbjct: 534  EADVEEAL 541


>ref|XP_541221.2| PREDICTED: similar to minichromosome maintenance protein domain
            containing 1 [Canis familiaris]
          Length = 1141

 Score =  213 bits (542), Expect = 2e-55
 Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 1/301 (0%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPR-GMKIRGNINICLMGDPGVAKSQLLSY 194
            ++ AS+ P+++G   VK A          ++   G ++RG  ++ L+GDPG  KSQ L Y
Sbjct: 305  EILASLCPQVFGMYLVKLAVAMVLAGGIQRTDASGTRVRGESHLLLVGDPGTGKSQFLKY 364

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
              ++ PRS  TTG GS+  GLT   ++DS  GE  LE GALVLAD G+CCIDEF+ + E 
Sbjct: 365  AAKITPRSVLTTGIGSTSAGLTVTAVKDS--GEWNLEAGALVLADAGLCCIDEFNSLKEH 422

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQTIS+AKAG++  LN R +ILAA NP  G+Y+P  S+  NI L + LLS
Sbjct: 423  DRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPK-GQYDPHESVSVNIALGSPLLS 481

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTV 734
            RFDL+ ++ D  + D D  ++   +++ ++   P    +   M+ M+ Y  + R  QPT+
Sbjct: 482  RFDLILVLLDTKNEDWDRIIS---SFILENKGYPSKSEKLWSMEKMKTYFCLIRNLQPTL 538

Query: 735  PESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNEA 914
             + + + +   Y +M+R++  S++A  T+ R L +++RL+ A ARL   DTV  ED   A
Sbjct: 539  SD-VGNQVLLRYYQMQRQS-DSRNAARTTIRLLESLIRLAEAHARLMFRDTVTLEDAITA 596

Query: 915  I 917
            +
Sbjct: 597  V 597


>ref|XP_860384.1| PREDICTED: similar to minichromosome maintenance protein 8 isoform 1
            isoform 4 [Canis familiaris]
          Length = 805

 Score =  188 bits (477), Expect = 8e-48
 Identities = 115/336 (34%), Positives = 183/336 (54%), Gaps = 40/336 (11%)
 Frame = +3

Query: 30   SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            S+ P I+GHE VK     A         D   R + IRG+ ++ ++GDPG+ KSQ+L  +
Sbjct: 374  SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHVLVVGDPGLGKSQMLQAV 432

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
              +APR  Y  G  ++  GLT  + +DS SG+  LE GALVL DQG+C IDEFDKM    
Sbjct: 433  CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 491

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
              A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP  G YN  +++ +N+++ +ALLSR
Sbjct: 492  HQALLEAMEQQSISLAKAGMVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 551

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653
            FDL++++ D P+ D+D  L++H+  +    ++                            
Sbjct: 552  FDLVFILLDTPNEDHDHLLSEHVIAIRAGKQRTVSSATIARMNSQDSNTSVLEVVSDKPL 611

Query: 654  -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809
                   P    + +  +L+R+YI   R+   P +    A  +   Y+E+R+++     +
Sbjct: 612  SERLKVVPGETIDLIPHQLLRKYIGYARQYVYPRLSTEAAQILQDFYLELRKQSQRLNSS 671

Query: 810  TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
              T+ R L +++RL+ A ARL + +   KED  + +
Sbjct: 672  PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 706


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,322,275
Number of Sequences: 33732
Number of extensions: 1151907
Number of successful extensions: 5779
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5753
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3379524166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-000841
         (954 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032594.1| minichromosome maintenance protein 7 [Mus muscu...   554   e-159
Alignment   gi|NP_032591.2| minichromosome maintenance protein 4 [Mus muscu...   254   7e-68
Alignment   gi|NP_032589.1| minichromosome maintenance deficient 3 [Mus mus...   254   1e-67
Alignment   gi|NP_032590.1| minichromosome maintenance deficient 2 mitotin ...   251   8e-67
Alignment   gi|NP_032593.1| minichromosome maintenance protein 6 [Mus muscu...   242   4e-64
Alignment   gi|NP_032592.1| minichromosome maintenance deficient 5, cell di...   239   4e-63
Alignment   gi|NP_082106.2| minichromosome maintenance deficient domain con...   208   8e-54
Alignment   gi|NP_079952.2| minichromosome maintenance deficient 8 [Mus mus...   191   1e-48

>ref|NP_032594.1| minichromosome maintenance protein 7 [Mus musculus]
          Length = 719

 Score =  554 bits (1428), Expect(2) = e-159
 Identities = 285/303 (94%), Positives = 289/303 (95%)
 Frame = +3

Query: 9    FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188
            F  KLAASIAPEIYGHEDVKKA         DQSP+GMKIRGNI+ICLMGDPGVAKSQLL
Sbjct: 332  FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPQGMKIRGNIHICLMGDPGVAKSQLL 391

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
            SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA
Sbjct: 392  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQN+QLPAAL
Sbjct: 452  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNVQLPAAL 511

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728
            LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMC E+QP
Sbjct: 512  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCHERQP 571

Query: 729  TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908
            TVPESLADYITAAYVEMRREA ASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN
Sbjct: 572  TVPESLADYITAAYVEMRREARASKDATYTSARTLLAILRLSTALARLRMVDIVEKEDVN 631

Query: 909  EAI 917
            EAI
Sbjct: 632  EAI 634



 Score = 26.6 bits (57), Expect(2) = e-159
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 917 RLMEMSKDSLLG 952
           RLMEMSKDSLLG
Sbjct: 635 RLMEMSKDSLLG 646


>ref|NP_032591.2| minichromosome maintenance protein 4 [Mus musculus]
          Length = 862

 Score =  254 bits (650), Expect = 7e-68
 Identities = 144/303 (47%), Positives = 196/303 (64%), Gaps = 4/303 (1%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188
            +LA+++AP IY HED+KK            D S  G  K R  INI L GDPG +KSQLL
Sbjct: 460  RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 519

Query: 189  SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368
             Y+  L PR QYT+G+GSS VGLTA V++D  + +L L+ GALVL+D G+CCIDEFDKM 
Sbjct: 520  QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 579

Query: 369  EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548
            E+ R+ +HEVMEQQT+SIAKAGI+  LNAR S+LAAANP   ++NP+++  +NIQLP  L
Sbjct: 580  ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 639

Query: 549  LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725
            LSRFDL++L+ D  D   D RLA H+  ++  S +   + E LDM +++ YIA       
Sbjct: 640  LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-QVEEEFLDMAVLKDYIAYAHSTIM 698

Query: 726  PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905
            P + E  +  +  AYV MR+   +S+       R L +++RL+ A A++R  + VE  DV
Sbjct: 699  PRLSEEASQALIEAYVNMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRFSNKVEAIDV 757

Query: 906  NEA 914
             EA
Sbjct: 758  EEA 760


>ref|NP_032589.1| minichromosome maintenance deficient 3 [Mus musculus]
          Length = 812

 Score =  254 bits (648), Expect = 1e-67
 Identities = 154/349 (44%), Positives = 205/349 (58%), Gaps = 49/349 (14%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194
            +LA S+AP I+GH+ VKKA         ++    G  IRG+INI L+GDP VAKSQLL Y
Sbjct: 298  QLARSLAPSIHGHDYVKKAILCLLLGGVERELENGSHIRGDINILLIGDPSVAKSQLLRY 357

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            +   APR+  TTGRGSSGVGLTAAV  D  +GE  LE GA+VLAD+GV CIDEFDKM++ 
Sbjct: 358  VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 417

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRTAIHEVMEQ  ++IAKAGI   LNARCS+LAAANP YGRY+  ++  +NI L  +LLS
Sbjct: 418  DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 477

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQH------------------------------ 644
            RFDLL+++ D+ D + D  ++ H+  +HQ+                              
Sbjct: 478  RFDLLFIMLDQMDPEQDREISDHVLRMHQYRAPGEQDGDALPLGSSVDILATDDPDFTQD 537

Query: 645  SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779
             +Q    +E  D  L               M++YI + +  +PT+ +  A YI   Y  +
Sbjct: 538  DQQDTRIYEKHDSLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPTLTQESAAYIAEEYSRL 597

Query: 780  RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
            R +   S D   TS   ARTL  ++RL+TA A+ RM  TV+ +D  EA+
Sbjct: 598  RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 646


>ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin [Mus musculus]
          Length = 904

 Score =  251 bits (641), Expect = 8e-67
 Identities = 140/323 (43%), Positives = 205/323 (63%), Gaps = 23/323 (7%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194
            K+ ASIAP IYGHED+K+           ++P G  K+RG+IN+ L GDPG AKSQ L Y
Sbjct: 476  KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 535

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
            I++++ R+ +TTG+G+S VGLTA V R  VS E TLE GALVLAD+GVC IDEFDKM + 
Sbjct: 536  IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 595

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP  GRY+P  +  +N+ L   ++S
Sbjct: 596  DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 655

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ---------------------FE 671
            RFD+L +++D  D   D  LA+ +  V  H R  P+                       E
Sbjct: 656  RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKKDEGLTNGGTLEPAMPNTYGVE 713

Query: 672  PLDMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILR 848
            PL  +++++YI   +E+ +P + +   D +   Y ++R+E+ A+     T  R + +++R
Sbjct: 714  PLPQEVLKKYIIYAKERVRPKLNQMDQDKVARMYSDLRKESMATGSIPIT-VRHIESMIR 772

Query: 849  LSTALARLRMVDTVEKEDVNEAI 917
            ++ A AR+ + D V ++DVN AI
Sbjct: 773  MAEAHARMHLRDYVMEDDVNMAI 795


>ref|NP_032593.1| minichromosome maintenance protein 6 [Mus musculus]
          Length = 821

 Score =  242 bits (618), Expect = 4e-64
 Identities = 129/301 (42%), Positives = 188/301 (62%), Gaps = 3/301 (0%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197
            L  S+ P I+G+++VK+           ++   G  +RG+IN+C++GDP  AKSQ L ++
Sbjct: 350  LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 409

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            D  +PR+ YT+G+ SS  GLTAAV+RD  S E  +E GAL+LAD GVCCIDEFDKM   D
Sbjct: 410  DEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDMRD 469

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            + AIHE MEQQTISI KAG+  TLNAR SILAAANP  G Y+  +SL+QNI L A ++SR
Sbjct: 470  QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPVSGHYDRSKSLKQNINLSAPIMSR 529

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737
            FDL +++ D  +   D  +A+ I  +H    +   +   LD   +RRY+   R+ +P + 
Sbjct: 530  FDLFFILVDECNEVTDYAIARRIVDLHSRIEESIDRVYSLDD--IRRYLLFARQFKPKIS 587

Query: 738  ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911
            +   D+I   Y  +R+   +  +K +   + R L +++RLS ++AR+   D V+ + V E
Sbjct: 588  KESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSESMARMHCCDEVQPKHVKE 647

Query: 912  A 914
            A
Sbjct: 648  A 648


>ref|NP_032592.1| minichromosome maintenance deficient 5, cell division cycle 46 [Mus
            musculus]
          Length = 733

 Score =  239 bits (609), Expect = 4e-63
 Identities = 133/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%)
 Frame = +3

Query: 21   LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            ++ SI+P I+G  D+KKA           + P G+  RG+IN+ ++GDPG AKSQLL ++
Sbjct: 334  ISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 393

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
            ++ +P   YT+G+GSS  GLTA+V+RD  S    +EGGA+VLAD GV CIDEFDKM E D
Sbjct: 394  EKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 453

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
            R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN  +GR++  +  E NI     +LSR
Sbjct: 454  RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 512

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731
            FD++++++D  + + D+ LA+H+  +H  +  Q  A    +D+  M+++IA CR +  P 
Sbjct: 513  FDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQAVEGEIDLAKMKKFIAYCRARCGPR 572

Query: 732  VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893
            +    A+ +   Y+ MR  A    +D+   S+     R L AI+R++ AL+++++     
Sbjct: 573  LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 632

Query: 894  KEDVNEAI 917
            + DV EA+
Sbjct: 633  EADVEEAL 640


>ref|NP_082106.2| minichromosome maintenance deficient domain containing 1 [Mus
            musculus]
          Length = 1290

 Score =  208 bits (529), Expect = 8e-54
 Identities = 121/301 (40%), Positives = 183/301 (60%), Gaps = 1/301 (0%)
 Frame = +3

Query: 18   KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPR-GMKIRGNINICLMGDPGVAKSQLLSY 194
            ++ AS+ P+++G   VK A          ++   G ++RG  ++ L+GDPG  KSQ L Y
Sbjct: 461  EILASLCPQVFGMYLVKLAVAMVLAGGIQRTDAAGTRVRGESHLLLVGDPGTGKSQFLKY 520

Query: 195  IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374
              ++ PRS  TTG GS+  GLT   ++DS  GE  LE GALVLAD G+CCIDEF+ + E 
Sbjct: 521  AAKITPRSVLTTGIGSTSAGLTVTAVKDS--GEWNLEAGALVLADAGLCCIDEFNSLKEH 578

Query: 375  DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554
            DRT+IHE MEQQTIS+AKAG++  LN R +ILAA NP  G+Y+P+ S+  NI L + LLS
Sbjct: 579  DRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPK-GQYDPKESVSVNIALGSPLLS 637

Query: 555  RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTV 734
            RFDL+ ++ D  + D D  ++   +++ ++   P        M+ M+ Y  + R   PT+
Sbjct: 638  RFDLVLVLLDTRNEDWDRIIS---SFILENKGYPSKSENLWSMEKMKTYFCLIRNLHPTL 694

Query: 735  PESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNEA 914
             E +++ +   Y +M+R++  S++A  T+ R L +++RL+ A ARL     V  ED   A
Sbjct: 695  SE-VSNQVLLRYYQMQRQS-DSRNAARTTIRLLESLIRLAEAHARLMFRSAVTLEDAVTA 752

Query: 915  I 917
            +
Sbjct: 753  V 753


>ref|NP_079952.2| minichromosome maintenance deficient 8 [Mus musculus]
          Length = 805

 Score =  191 bits (485), Expect = 1e-48
 Identities = 117/336 (34%), Positives = 183/336 (54%), Gaps = 40/336 (11%)
 Frame = +3

Query: 30   SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197
            S+ P I+GHE VK     A         D   R + IRG+ ++ ++GDPG+ KSQ+L   
Sbjct: 374  SLCPVIFGHELVKAGLTLALFGGSQKYADDKNR-IPIRGDPHVLIVGDPGLGKSQMLQAA 432

Query: 198  DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377
              +APR  Y  G  ++  GLT  + +DS SG+  LE GALVL DQG+C IDEFDKM    
Sbjct: 433  CNVAPRGVYVCGNTTTSSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 491

Query: 378  RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557
              A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP  G YN  R++ +N+++ +ALLSR
Sbjct: 492  HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKARTVSENLKMGSALLSR 551

Query: 558  FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653
            FDL++++ D P+  +D  L++H+  +    ++                            
Sbjct: 552  FDLVFILLDTPNEQHDHLLSEHVIAIRAGKQKAVSSATVTRVLSQDSNTSVLEVVSEKPL 611

Query: 654  -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809
                   P  Q +P+  +L+R+YI   R+   P +    A  +   Y+E+R+++     +
Sbjct: 612  SERLKVAPGEQTDPIPHQLLRKYIGYARQYVHPRLSTDAAQALQDFYLELRKQSQRVGSS 671

Query: 810  TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917
              T+ R L +++RL+ A ARL + +   +ED  + I
Sbjct: 672  PITT-RQLESLIRLTEARARLELREEATREDAEDII 706


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,039,599
Number of Sequences: 45328
Number of extensions: 1300151
Number of successful extensions: 6582
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 5063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6558
length of database: 21,768,885
effective HSP length: 103
effective length of database: 17,100,101
effective search space used: 3659421614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)