BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000841 (954 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 897,799 Number of Sequences: 1040 Number of extensions: 23766 Number of successful extensions: 104 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 104 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 85089600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000841 (954 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_878074.1| PREDICTED: similar to minichromosome maintenanc... 253 1e-67 Alignment gi|XP_869445.1| PREDICTED: similar to minichromosome maintenanc... 253 1e-67 Alignment gi|XP_877890.1| PREDICTED: similar to minichromosome maintenanc... 253 1e-67 Alignment gi|XP_587221.2| PREDICTED: similar to minichromosome maintenanc... 253 1e-67 Alignment gi|XP_877686.1| PREDICTED: similar to minichromosome maintenanc... 253 1e-67 Alignment gi|XP_583503.2| PREDICTED: similar to DNA replication licensing... 240 1e-63 Alignment gi|XP_872641.1| PREDICTED: similar to DNA replication licensing... 238 7e-63 Alignment gi|XP_580477.2| PREDICTED: similar to minichromosome maintenanc... 238 7e-63 Alignment gi|XP_595989.2| PREDICTED: similar to DNA replication licensing... 225 3e-59 Alignment gi|XP_584128.2| PREDICTED: similar to minichromosome maintenanc... 191 7e-49 >ref|XP_878074.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 6 [Bos taurus] Length = 825 Score = 253 bits (647), Expect = 1e-67 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 399 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 458 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 +++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 459 VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 518 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 519 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 578 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677 RFD+L +++D D D LA+ + V H R P+ EPL Sbjct: 579 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 636 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++R+YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 637 PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 695 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 696 EAHARMHLRDYVMEDDVNMAI 716 >ref|XP_869445.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 3 [Bos taurus] Length = 831 Score = 253 bits (647), Expect = 1e-67 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 405 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 464 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 +++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 465 VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 524 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 525 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 584 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677 RFD+L +++D D D LA+ + V H R P+ EPL Sbjct: 585 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 642 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++R+YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 643 PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 701 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 702 EAHARMHLRDYVMEDDVNMAI 722 >ref|XP_877890.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 5 [Bos taurus] Length = 831 Score = 253 bits (647), Expect = 1e-67 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 405 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 464 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 +++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 465 VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 524 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 525 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 584 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677 RFD+L +++D D D LA+ + V H R P+ EPL Sbjct: 585 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 642 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++R+YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 643 PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 701 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 702 EAHARMHLRDYVMEDDVNMAI 722 >ref|XP_587221.2| PREDICTED: similar to minichromosome maintenance protein 2 isoform 1 [Bos taurus] Length = 825 Score = 253 bits (647), Expect = 1e-67 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 399 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 458 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 +++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 459 VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 518 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 519 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 578 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677 RFD+L +++D D D LA+ + V H R P+ EPL Sbjct: 579 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 636 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++R+YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 637 PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 695 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 696 EAHARMHLRDYVMEDDVNMAI 716 >ref|XP_877686.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 4 [Bos taurus] Length = 834 Score = 253 bits (647), Expect = 1e-67 Identities = 141/321 (43%), Positives = 204/321 (63%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 408 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 467 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 +++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 468 VEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 527 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 528 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 587 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ-------------------FEPL 677 RFD+L +++D D D LA+ + V H R P+ EPL Sbjct: 588 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKEDGGSGGAPEPAMPNTYGVEPL 645 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++R+YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 646 PQEVLRKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 704 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 705 EAHARMHLRDYVMEDDVNMAI 725 >ref|XP_583503.2| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46 homolog) (P1-CDC46) [Bos taurus] Length = 734 Score = 240 bits (612), Expect = 1e-63 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 ++ SIAP I+G D+KKA + P G+ RG+IN+ ++GDPG AKSQLL ++ Sbjct: 335 ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 394 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 ++ +P YT+G+GSS GLTA+V+RD S +EGGA+VLAD GV CIDEFDKM E D Sbjct: 395 EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 454 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN +GR++ + E NI +LSR Sbjct: 455 RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 513 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731 FD++++++D + + D+ LA+H+ +H + Q A +D+ ++++IA CR K P Sbjct: 514 FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQAQAVEGEIDLAKLKKFIAYCRAKCGPR 573 Query: 732 VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893 + A+ + Y+ MR A +D+ S+ R L AI+R++ AL+++++ Sbjct: 574 LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 633 Query: 894 KEDVNEAI 917 + DV EA+ Sbjct: 634 EADVEEAL 641 >ref|XP_872641.1| PREDICTED: similar to DNA replication licensing factor MCM4 (CDC21 homolog) (P1-CDC21) [Bos taurus] Length = 509 Score = 238 bits (606), Expect = 7e-63 Identities = 132/257 (51%), Positives = 172/257 (66%), Gaps = 3/257 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 112 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 171 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D GVCCIDEFDKM Sbjct: 172 QYVHNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGVCCIDEFDKMN 231 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR SILAAANP ++NP+++ +NIQLP L Sbjct: 232 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPIESQWNPKKTTIENIQLPHTL 291 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDL++L+ D D D RLA H+ ++ S + AQ E +DM ++R YIA Sbjct: 292 LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-EAQEEGMDMAVLRDYIAYAHS--- 347 Query: 729 TVPESLADYITAAYVEM 779 TV L+ + A +E+ Sbjct: 348 TVMPRLSQDASQALIEV 364 >ref|XP_580477.2| PREDICTED: similar to minichromosome maintenance protein 4 [Bos taurus] Length = 793 Score = 238 bits (606), Expect = 7e-63 Identities = 132/257 (51%), Positives = 172/257 (66%), Gaps = 3/257 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 387 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 446 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D GVCCIDEFDKM Sbjct: 447 QYVHNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGVCCIDEFDKMN 506 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR SILAAANP ++NP+++ +NIQLP L Sbjct: 507 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPIESQWNPKKTTIENIQLPHTL 566 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDL++L+ D D D RLA H+ ++ S + AQ E +DM ++R YIA Sbjct: 567 LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-EAQEEGMDMAVLRDYIAYAHS--- 622 Query: 729 TVPESLADYITAAYVEM 779 TV L+ + A +E+ Sbjct: 623 TVMPRLSQDASQALIEV 639 >ref|XP_595989.2| PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM) [Bos taurus] Length = 601 Score = 225 bits (574), Expect = 3e-59 Identities = 127/305 (41%), Positives = 185/305 (60%), Gaps = 7/305 (2%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197 L S+ P I+G+++VK+ ++ G +RG+IN+C++GDP AKSQ L ++ Sbjct: 184 LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 243 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 + +PR+ YT+G+ SS GLTAAV+RD S E +E GAL+LAD GVCCID DKM D Sbjct: 244 EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDAPDKMDVRD 303 Query: 378 RTAIHEVMEQQTISIAKA----GILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAA 545 + AIHE MEQQTISI + IL TLNAR SILAAANP G Y+ +SL+QNI L A Sbjct: 304 QVAIHEAMEQQTISITSSLSFYFILATLNARTSILAAANPISGHYDRSKSLKQNINLSAP 363 Query: 546 LLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQ 725 ++SRFDL +++ D + D +A+ I V HSR + + +RRY+ R+ + Sbjct: 364 IMSRFDLFFILVDECNEVTDYAIARRI--VDLHSRIEDSIDRVYSLDEIRRYLLFARQFK 421 Query: 726 PTVPESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKE 899 P + + D+I Y +R+ + +K + + R L +++RLS A+AR+ D V+ + Sbjct: 422 PKISKESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPK 481 Query: 900 DVNEA 914 V EA Sbjct: 482 HVKEA 486 >ref|XP_584128.2| PREDICTED: similar to minichromosome maintenance protein 8 isoform 1 isoform 1 [Bos taurus] Length = 804 Score = 191 bits (485), Expect = 7e-49 Identities = 116/336 (34%), Positives = 184/336 (54%), Gaps = 40/336 (11%) Frame = +3 Query: 30 SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 S+ P I+GHE VK A D R + IRG+ ++ ++GDPG+ KSQ+L + Sbjct: 373 SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHVLVVGDPGLGKSQMLQAV 431 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 +APR Y G ++ GLT + +DS SG+ LE GALVL DQG+C IDEFDKM Sbjct: 432 CSVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 490 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP G YN +++ +N+++ +ALLSR Sbjct: 491 HQALLEAMEQQSISLAKAGMVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 550 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653 FDL++++ D P+ D+D L++H+ + ++ Sbjct: 551 FDLVFILLDTPNEDHDHLLSEHVIAIRAGKQRAVSSATVARMNSQDSNTSILEVVSDKPL 610 Query: 654 -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809 P +P+ +L+R+YI R+ P + A + Y+E+R+++ + Sbjct: 611 SERLKVVPGETIDPIPHQLLRKYIGYSRQYVYPRLSTEAAQILQNFYLELRKQSQRLSSS 670 Query: 810 TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 T+ R L +++RL+ A ARL + + KED + + Sbjct: 671 PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 705 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,396,544 Number of Sequences: 33508 Number of extensions: 979783 Number of successful extensions: 4915 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4883 length of database: 16,112,626 effective HSP length: 101 effective length of database: 12,728,318 effective search space used: 2749316688 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000841 (954 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_005907.3| minichromosome maintenance protein 7 isoform 1 ... 563 e-162 Alignment gi|NP_877577.1| minichromosome maintenance protein 7 isoform 2 ... 563 e-162 Alignment gi|NP_005905.2| minichromosome maintenance protein 4 [Homo sapi... 258 4e-69 Alignment gi|NP_877423.1| minichromosome maintenance protein 4 [Homo sapi... 258 4e-69 Alignment gi|NP_002379.2| minichromosome maintenance protein 3 [Homo sapi... 251 6e-67 Alignment gi|NP_004517.2| minichromosome maintenance protein 2 [Homo sapi... 251 6e-67 Alignment gi|NP_005906.2| minichromosome maintenance protein 6 [Homo sapi... 241 5e-64 Alignment gi|NP_006730.2| minichromosome maintenance deficient protein 5 ... 239 2e-63 Alignment gi|NP_877954.1| minichromosome maintenance protein 8 isoform 2 ... 188 7e-48 Alignment gi|NP_115874.3| minichromosome maintenance protein 8 isoform 1 ... 188 7e-48 >ref|NP_005907.3| minichromosome maintenance protein 7 isoform 1 [Homo sapiens] Length = 719 Score = 563 bits (1452), Expect(2) = e-162 Identities = 289/303 (95%), Positives = 290/303 (95%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSPRGMKIRGNINICLMGDPGVAKSQLL Sbjct: 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 391 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 392 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL Sbjct: 452 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 511 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPP+QFEPLDMKLMRRYIAMCREKQP Sbjct: 512 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQFEPLDMKLMRRYIAMCREKQP 571 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 VPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN Sbjct: 572 MVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDVVEKEDVN 631 Query: 909 EAI 917 EAI Sbjct: 632 EAI 634 Score = 26.6 bits (57), Expect(2) = e-162 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 635 RLMEMSKDSLLG 646 >ref|NP_877577.1| minichromosome maintenance protein 7 isoform 2 [Homo sapiens] Length = 543 Score = 563 bits (1452), Expect(2) = e-162 Identities = 289/303 (95%), Positives = 290/303 (95%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSPRGMKIRGNINICLMGDPGVAKSQLL Sbjct: 156 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 215 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 216 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 275 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL Sbjct: 276 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 335 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPP+QFEPLDMKLMRRYIAMCREKQP Sbjct: 336 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQFEPLDMKLMRRYIAMCREKQP 395 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 VPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN Sbjct: 396 MVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDVVEKEDVN 455 Query: 909 EAI 917 EAI Sbjct: 456 EAI 458 Score = 26.6 bits (57), Expect(2) = e-162 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 459 RLMEMSKDSLLG 470 >ref|NP_005905.2| minichromosome maintenance protein 4 [Homo sapiens] Length = 863 Score = 258 bits (660), Expect = 4e-69 Identities = 145/303 (47%), Positives = 199/303 (65%), Gaps = 4/303 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 461 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 520 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D G+CCIDEFDKM Sbjct: 521 QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 580 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR S+LAAANP ++NP+++ +NIQLP L Sbjct: 581 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 640 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725 LSRFDL++L+ D D D RLA H+ ++ S + A+ E LDM +++ YIA Sbjct: 641 LSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEE-QAEEELLDMAVLKDYIAYAHSTIM 699 Query: 726 PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905 P + E + + AYV+MR+ +S+ R L +++RL+ A A++R+ + VE DV Sbjct: 700 PRLSEEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDV 758 Query: 906 NEA 914 EA Sbjct: 759 EEA 761 >ref|NP_877423.1| minichromosome maintenance protein 4 [Homo sapiens] Length = 863 Score = 258 bits (660), Expect = 4e-69 Identities = 145/303 (47%), Positives = 199/303 (65%), Gaps = 4/303 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 461 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 520 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D G+CCIDEFDKM Sbjct: 521 QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 580 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR S+LAAANP ++NP+++ +NIQLP L Sbjct: 581 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 640 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725 LSRFDL++L+ D D D RLA H+ ++ S + A+ E LDM +++ YIA Sbjct: 641 LSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEE-QAEEELLDMAVLKDYIAYAHSTIM 699 Query: 726 PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905 P + E + + AYV+MR+ +S+ R L +++RL+ A A++R+ + VE DV Sbjct: 700 PRLSEEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDV 758 Query: 906 NEA 914 EA Sbjct: 759 EEA 761 >ref|NP_002379.2| minichromosome maintenance protein 3 [Homo sapiens] Length = 808 Score = 251 bits (641), Expect = 6e-67 Identities = 153/349 (43%), Positives = 203/349 (58%), Gaps = 49/349 (14%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194 +LA S+AP I+GH+ VKKA ++ G IRG+INI L+GDP VAKSQLL Y Sbjct: 298 QLAKSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRY 357 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 + APR+ TTGRGSSGVGLTAAV D +GE LE GA+VLAD+GV CIDEFDKM++ Sbjct: 358 VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 417 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRTAIHEVMEQ ++IAKAGI LNARCS+LAAANP YGRY+ ++ +NI L +LLS Sbjct: 418 DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 477 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVH------------------------------QH 644 RFDLL+++ D+ D + D ++ H+ +H Q Sbjct: 478 RFDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPNFSQE 537 Query: 645 SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779 +Q +E D L M++YI + + +P + + A YI Y + Sbjct: 538 DQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRL 597 Query: 780 RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 R + S D TS ARTL ++RL+TA A+ RM TV+ +D EA+ Sbjct: 598 RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 646 >ref|NP_004517.2| minichromosome maintenance protein 2 [Homo sapiens] Length = 904 Score = 251 bits (641), Expect = 6e-67 Identities = 141/321 (43%), Positives = 206/321 (64%), Gaps = 21/321 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 476 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 535 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 I++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 536 IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 595 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 596 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 655 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHI--TYVHQH------------SRQPPAQ-----FEPL 677 RFD+L +++D D D LA+ + ++V H S PA EPL Sbjct: 656 RFDILCVVRDTVDPVQDEMLARFVVGSHVRHHPSNKEEEGLANGSAAEPAMPNTYGVEPL 715 Query: 678 DMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLS 854 +++++YI +E+ P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 716 PQEVLKKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMA 774 Query: 855 TALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DVN AI Sbjct: 775 EAHARIHLRDYVIEDDVNMAI 795 >ref|NP_005906.2| minichromosome maintenance protein 6 [Homo sapiens] Length = 821 Score = 241 bits (616), Expect = 5e-64 Identities = 129/301 (42%), Positives = 188/301 (62%), Gaps = 3/301 (0%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197 L S+ P I+G+++VK+ ++ G +RG+IN+C++GDP AKSQ L ++ Sbjct: 350 LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 409 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 + +PR+ YT+G+ SS GLTAAV+RD S E +E GAL+LAD GVCCIDEFDKM D Sbjct: 410 EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRD 469 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 + AIHE MEQQTISI KAG+ TLNAR SILAAANP G Y+ +SL+QNI L A ++SR Sbjct: 470 QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSR 529 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737 FDL +++ D + D +A+ I +H + + LD +RRY+ R+ +P + Sbjct: 530 FDLFFILVDECNEVTDYAIARRIVDLHSRIEESIDRVYSLDD--IRRYLLFARQFKPKIS 587 Query: 738 ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911 + D+I Y +R+ + +K + + R L +++RLS A+AR+ D V+ + V E Sbjct: 588 KESEDFIVEQYKHLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKE 647 Query: 912 A 914 A Sbjct: 648 A 648 >ref|NP_006730.2| minichromosome maintenance deficient protein 5 [Homo sapiens] Length = 734 Score = 239 bits (611), Expect = 2e-63 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 ++ SIAP I+G D+KKA + P G+ RG+IN+ ++GDPG AKSQLL ++ Sbjct: 335 ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 394 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 ++ +P YT+G+GSS GLTA+V+RD S +EGGA+VLAD GV CIDEFDKM E D Sbjct: 395 EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 454 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN +GR++ + E NI +LSR Sbjct: 455 RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 513 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731 FD++++++D + + D+ LA+H+ +H + Q A +D+ ++++IA CR K P Sbjct: 514 FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQTQAVEGEIDLAKLKKFIAYCRVKCGPR 573 Query: 732 VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893 + A+ + Y+ MR A +D+ S+ R L AI+R++ AL+++++ Sbjct: 574 LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 633 Query: 894 KEDVNEAI 917 + DV EA+ Sbjct: 634 EADVEEAL 641 >ref|NP_877954.1| minichromosome maintenance protein 8 isoform 2 [Homo sapiens] Length = 824 Score = 188 bits (477), Expect = 7e-48 Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 40/336 (11%) Frame = +3 Query: 30 SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 S+ P I+GHE VK A D R + IRG+ +I ++GDPG+ KSQ+L Sbjct: 393 SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHILVVGDPGLGKSQMLQAA 451 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 +APR Y G ++ GLT + +DS SG+ LE GALVL DQG+C IDEFDKM Sbjct: 452 CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 510 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP G YN +++ +N+++ +ALLSR Sbjct: 511 HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 570 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653 FDL++++ D P+ +D L++H+ + ++ Sbjct: 571 FDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSATVARMNSQDSNTSVLEVVSEKPL 630 Query: 654 -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809 P +P+ +L+R+YI R+ P + A + Y+E+R+++ + Sbjct: 631 SERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS 690 Query: 810 TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 T+ R L +++RL+ A ARL + + KED + + Sbjct: 691 PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 725 >ref|NP_115874.3| minichromosome maintenance protein 8 isoform 1 [Homo sapiens] Length = 840 Score = 188 bits (477), Expect = 7e-48 Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 40/336 (11%) Frame = +3 Query: 30 SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 S+ P I+GHE VK A D R + IRG+ +I ++GDPG+ KSQ+L Sbjct: 409 SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHILVVGDPGLGKSQMLQAA 467 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 +APR Y G ++ GLT + +DS SG+ LE GALVL DQG+C IDEFDKM Sbjct: 468 CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 526 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP G YN +++ +N+++ +ALLSR Sbjct: 527 HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 586 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653 FDL++++ D P+ +D L++H+ + ++ Sbjct: 587 FDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSATVARMNSQDSNTSVLEVVSEKPL 646 Query: 654 -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809 P +P+ +L+R+YI R+ P + A + Y+E+R+++ + Sbjct: 647 SERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS 706 Query: 810 TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 T+ R L +++RL+ A ARL + + KED + + Sbjct: 707 PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 741 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,422,465 Number of Sequences: 39411 Number of extensions: 1181920 Number of successful extensions: 6443 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6400 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 2957242655 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000841 (954 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_536865.2| PREDICTED: similar to DNA replication licensing... 568 e-163 Alignment gi|XP_859866.1| PREDICTED: similar to DNA replication licensing... 568 e-163 Alignment gi|XP_849809.1| PREDICTED: similar to DNA replication licensing... 568 e-163 Alignment gi|XP_535063.2| PREDICTED: similar to minichromosome maintenanc... 254 9e-68 Alignment gi|XP_538960.2| PREDICTED: similar to DNA replication licensing... 251 6e-67 Alignment gi|XP_541736.2| PREDICTED: similar to minichromosome maintenanc... 250 1e-66 Alignment gi|XP_533338.2| PREDICTED: similar to DNA replication licensing... 241 1e-63 Alignment gi|XP_853134.1| PREDICTED: similar to DNA replication licensing... 239 3e-63 Alignment gi|XP_541221.2| PREDICTED: similar to minichromosome maintenanc... 213 2e-55 Alignment gi|XP_860384.1| PREDICTED: similar to minichromosome maintenanc... 188 8e-48 >ref|XP_536865.2| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 1 [Canis familiaris] Length = 733 Score = 568 bits (1463), Expect(2) = e-163 Identities = 291/303 (96%), Positives = 292/303 (96%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSPRGMKIRGNINICLMGDPGVAKSQLL Sbjct: 346 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 405 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 406 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 465 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL Sbjct: 466 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 525 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP Sbjct: 526 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 585 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN Sbjct: 586 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 645 Query: 909 EAI 917 EAI Sbjct: 646 EAI 648 Score = 26.6 bits (57), Expect(2) = e-163 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 649 RLMEMSKDSLLG 660 >ref|XP_859866.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 5 [Canis familiaris] Length = 724 Score = 568 bits (1463), Expect(2) = e-163 Identities = 291/303 (96%), Positives = 292/303 (96%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSPRGMKIRGNINICLMGDPGVAKSQLL Sbjct: 337 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 396 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 397 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 456 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL Sbjct: 457 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 516 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP Sbjct: 517 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 576 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN Sbjct: 577 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 636 Query: 909 EAI 917 EAI Sbjct: 637 EAI 639 Score = 26.6 bits (57), Expect(2) = e-163 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 640 RLMEMSKDSLLG 651 >ref|XP_849809.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 3 [Canis familiaris] Length = 719 Score = 568 bits (1463), Expect(2) = e-163 Identities = 291/303 (96%), Positives = 292/303 (96%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSPRGMKIRGNINICLMGDPGVAKSQLL Sbjct: 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLL 391 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 392 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL Sbjct: 452 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 511 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYI+MCREKQP Sbjct: 512 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYISMCREKQP 571 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN Sbjct: 572 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 631 Query: 909 EAI 917 EAI Sbjct: 632 EAI 634 Score = 26.6 bits (57), Expect(2) = e-163 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 635 RLMEMSKDSLLG 646 >ref|XP_535063.2| PREDICTED: similar to minichromosome maintenance protein 4 [Canis familiaris] Length = 929 Score = 254 bits (649), Expect = 9e-68 Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 4/303 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 527 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 586 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D G+CCIDEFDKM Sbjct: 587 QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 646 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR SILAAANP ++NP+++ +NIQLP L Sbjct: 647 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVESQWNPKKTTIENIQLPHTL 706 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725 LSRFDL++L+ D D D RLA H+ ++ S + + E +DM +++ YIA Sbjct: 707 LSRFDLIFLMLDPQDEAYDRRLAHHLVALYYRSEEQMEE-EFMDMAVLKDYIAYAHSMVM 765 Query: 726 PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905 P + + + + AYV+MR+ +S+ R L +++RL+ A A++R VE DV Sbjct: 766 PRLSQEASQALIEAYVDMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRFSSKVEAVDV 824 Query: 906 NEA 914 EA Sbjct: 825 EEA 827 >ref|XP_538960.2| PREDICTED: similar to DNA replication licensing factor MCM3 (DNA polymerase alpha holoenzyme-associated protein P1) (RLF beta subunit) (P102 protein) (P1-MCM3) [Canis familiaris] Length = 916 Score = 251 bits (642), Expect = 6e-67 Identities = 154/349 (44%), Positives = 203/349 (58%), Gaps = 49/349 (14%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194 +LA S+AP I+GH+ VKKA ++ G IRG+INI L+GDP VAKSQLL Y Sbjct: 406 QLARSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRY 465 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 + APR+ TTGRGSSGVGLTAAV D +GE LE GA+VLAD+GV CIDEFDKM++ Sbjct: 466 VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 525 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRTAIHEVMEQ ++IAKAGI LNARCS+LAAANP YGRY+ ++ +NI L +LLS Sbjct: 526 DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 585 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVH------------------------------QH 644 RFDLL+++ D+ D + D ++ H+ +H Q Sbjct: 586 RFDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPDFNQE 645 Query: 645 SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779 +Q +E D L MR+YI + + +P + + A YI Y + Sbjct: 646 DQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMRKYIHVAKIIKPILTQESAAYIAEEYSRL 705 Query: 780 RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 R + S D TS ARTL ++RL+TA A+ RM TV+ +D EA+ Sbjct: 706 RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 754 >ref|XP_541736.2| PREDICTED: similar to minichromosome maintenance protein 2 [Canis familiaris] Length = 1001 Score = 250 bits (639), Expect = 1e-66 Identities = 141/320 (44%), Positives = 205/320 (64%), Gaps = 20/320 (6%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 574 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 633 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 I++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 634 IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 693 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+I+AAANP GRY+P + N+ L ++S Sbjct: 694 DRTSIHEAMEQQSISISKAGIVTSLQARCTIIAAANPIGGRYDPSLTFSDNVDLTEPIIS 753 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHI--TYVHQH-----------SRQPPAQ-----FEPLD 680 RFD+L +++D D D LA+ + +++ H Q PA EPL Sbjct: 754 RFDVLCVVRDTVDPVQDEMLARFVVGSHIRHHPSNKEEGLGSSGTQEPAMPNTYGVEPLP 813 Query: 681 MKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLST 857 +++++YI +EK P + + D + Y ++R+E+ A+ T R + +++R++ Sbjct: 814 QEVLKKYIIYAKEKVHPKLNQMDQDKVAKMYSDLRKESMATGSIPIT-VRHIESMIRMAE 872 Query: 858 ALARLRMVDTVEKEDVNEAI 917 A AR+ + D V ++DV+ AI Sbjct: 873 AHARIHLRDYVIEDDVSMAI 892 >ref|XP_533338.2| PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM) [Canis familiaris] Length = 955 Score = 241 bits (614), Expect = 1e-63 Identities = 130/301 (43%), Positives = 188/301 (62%), Gaps = 3/301 (0%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197 L S+ P I+G+++VK+ ++ G +RG+IN+C++GDP AKSQ L ++ Sbjct: 484 LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 543 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 + +PR+ YT+G+ SS GLTAAV+RD S E +E GAL+LAD GVCCIDEFDKM D Sbjct: 544 EEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRD 603 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 + AIHE MEQQTISI KAG+ TLNAR SILAAANP G Y+ +SL+QNI L A ++SR Sbjct: 604 QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSR 663 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737 FDL +++ D + D +A+ I V HSR + + +RRY+ R+ +P + Sbjct: 664 FDLFFILVDECNEVTDYAIARRI--VDLHSRIEDSIDRVYSLDDIRRYLLFARQFKPKIS 721 Query: 738 ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911 + D+I Y +R+ + +K + + R L +++RLS A+AR+ D V+ + V E Sbjct: 722 KESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKE 781 Query: 912 A 914 A Sbjct: 782 A 782 >ref|XP_853134.1| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46 homolog) (P1-CDC46) [Canis familiaris] Length = 634 Score = 239 bits (610), Expect = 3e-63 Identities = 134/308 (43%), Positives = 197/308 (63%), Gaps = 9/308 (2%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 ++ SIAP I+G D+KKA + P G+ RG+IN+ ++GDPG AKSQLL ++ Sbjct: 235 ISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 294 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 ++ +P YT+G+GSS GLTA+V+RD S +EGGA+VLAD GV CIDEFDKM E D Sbjct: 295 EKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 354 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN +GR++ + E NI +LSR Sbjct: 355 RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 413 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731 FD++++++D + + D+ LA+H+ +H + Q A +D+ ++++IA CR K P Sbjct: 414 FDMIFIVKDEHNEERDVMLAKHVITLHVSALTQTQAVEGEVDLTKLKKFIAYCRAKCGPR 473 Query: 732 VPESLADYITAAYVEMRREA-WASKDATYTS-----ARTLLAILRLSTALARLRMVDTVE 893 + A+ + Y+ MR A +D+ S R L AI+R++ AL+++++ Sbjct: 474 LSAEAAEKLKNRYIIMRSGARQHERDSDRRSNIPITVRQLEAIVRIAEALSKMKLQPFAT 533 Query: 894 KEDVNEAI 917 + DV EA+ Sbjct: 534 EADVEEAL 541 >ref|XP_541221.2| PREDICTED: similar to minichromosome maintenance protein domain containing 1 [Canis familiaris] Length = 1141 Score = 213 bits (542), Expect = 2e-55 Identities = 123/301 (40%), Positives = 185/301 (61%), Gaps = 1/301 (0%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPR-GMKIRGNINICLMGDPGVAKSQLLSY 194 ++ AS+ P+++G VK A ++ G ++RG ++ L+GDPG KSQ L Y Sbjct: 305 EILASLCPQVFGMYLVKLAVAMVLAGGIQRTDASGTRVRGESHLLLVGDPGTGKSQFLKY 364 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 ++ PRS TTG GS+ GLT ++DS GE LE GALVLAD G+CCIDEF+ + E Sbjct: 365 AAKITPRSVLTTGIGSTSAGLTVTAVKDS--GEWNLEAGALVLADAGLCCIDEFNSLKEH 422 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQTIS+AKAG++ LN R +ILAA NP G+Y+P S+ NI L + LLS Sbjct: 423 DRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPK-GQYDPHESVSVNIALGSPLLS 481 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTV 734 RFDL+ ++ D + D D ++ +++ ++ P + M+ M+ Y + R QPT+ Sbjct: 482 RFDLILVLLDTKNEDWDRIIS---SFILENKGYPSKSEKLWSMEKMKTYFCLIRNLQPTL 538 Query: 735 PESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNEA 914 + + + + Y +M+R++ S++A T+ R L +++RL+ A ARL DTV ED A Sbjct: 539 SD-VGNQVLLRYYQMQRQS-DSRNAARTTIRLLESLIRLAEAHARLMFRDTVTLEDAITA 596 Query: 915 I 917 + Sbjct: 597 V 597 >ref|XP_860384.1| PREDICTED: similar to minichromosome maintenance protein 8 isoform 1 isoform 4 [Canis familiaris] Length = 805 Score = 188 bits (477), Expect = 8e-48 Identities = 115/336 (34%), Positives = 183/336 (54%), Gaps = 40/336 (11%) Frame = +3 Query: 30 SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 S+ P I+GHE VK A D R + IRG+ ++ ++GDPG+ KSQ+L + Sbjct: 374 SLCPVIFGHELVKAGLALALFGGSQKYADDKNR-IPIRGDPHVLVVGDPGLGKSQMLQAV 432 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 +APR Y G ++ GLT + +DS SG+ LE GALVL DQG+C IDEFDKM Sbjct: 433 CNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 491 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP G YN +++ +N+++ +ALLSR Sbjct: 492 HQALLEAMEQQSISLAKAGMVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSR 551 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653 FDL++++ D P+ D+D L++H+ + ++ Sbjct: 552 FDLVFILLDTPNEDHDHLLSEHVIAIRAGKQRTVSSATIARMNSQDSNTSVLEVVSDKPL 611 Query: 654 -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809 P + + +L+R+YI R+ P + A + Y+E+R+++ + Sbjct: 612 SERLKVVPGETIDLIPHQLLRKYIGYARQYVYPRLSTEAAQILQDFYLELRKQSQRLNSS 671 Query: 810 TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 T+ R L +++RL+ A ARL + + KED + + Sbjct: 672 PITT-RQLESLIRLTEARARLELREEATKEDAEDIV 706 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,322,275 Number of Sequences: 33732 Number of extensions: 1151907 Number of successful extensions: 5779 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5753 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3379524166 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000841 (954 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_032594.1| minichromosome maintenance protein 7 [Mus muscu... 554 e-159 Alignment gi|NP_032591.2| minichromosome maintenance protein 4 [Mus muscu... 254 7e-68 Alignment gi|NP_032589.1| minichromosome maintenance deficient 3 [Mus mus... 254 1e-67 Alignment gi|NP_032590.1| minichromosome maintenance deficient 2 mitotin ... 251 8e-67 Alignment gi|NP_032593.1| minichromosome maintenance protein 6 [Mus muscu... 242 4e-64 Alignment gi|NP_032592.1| minichromosome maintenance deficient 5, cell di... 239 4e-63 Alignment gi|NP_082106.2| minichromosome maintenance deficient domain con... 208 8e-54 Alignment gi|NP_079952.2| minichromosome maintenance deficient 8 [Mus mus... 191 1e-48 >ref|NP_032594.1| minichromosome maintenance protein 7 [Mus musculus] Length = 719 Score = 554 bits (1428), Expect(2) = e-159 Identities = 285/303 (94%), Positives = 289/303 (95%) Frame = +3 Query: 9 FL*KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLL 188 F KLAASIAPEIYGHEDVKKA DQSP+GMKIRGNI+ICLMGDPGVAKSQLL Sbjct: 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPQGMKIRGNIHICLMGDPGVAKSQLL 391 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA Sbjct: 392 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 451 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQN+QLPAAL Sbjct: 452 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNVQLPAAL 511 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQP 728 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMC E+QP Sbjct: 512 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCHERQP 571 Query: 729 TVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVN 908 TVPESLADYITAAYVEMRREA ASKDATYTSARTLLAILRLSTALARLRMVD VEKEDVN Sbjct: 572 TVPESLADYITAAYVEMRREARASKDATYTSARTLLAILRLSTALARLRMVDIVEKEDVN 631 Query: 909 EAI 917 EAI Sbjct: 632 EAI 634 Score = 26.6 bits (57), Expect(2) = e-159 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 917 RLMEMSKDSLLG 952 RLMEMSKDSLLG Sbjct: 635 RLMEMSKDSLLG 646 >ref|NP_032591.2| minichromosome maintenance protein 4 [Mus musculus] Length = 862 Score = 254 bits (650), Expect = 7e-68 Identities = 144/303 (47%), Positives = 196/303 (64%), Gaps = 4/303 (1%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXX--DQSPRGM-KIRGNINICLMGDPGVAKSQLL 188 +LA+++AP IY HED+KK D S G K R INI L GDPG +KSQLL Sbjct: 460 RLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLL 519 Query: 189 SYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMA 368 Y+ L PR QYT+G+GSS VGLTA V++D + +L L+ GALVL+D G+CCIDEFDKM Sbjct: 520 QYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMN 579 Query: 369 EADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAAL 548 E+ R+ +HEVMEQQT+SIAKAGI+ LNAR S+LAAANP ++NP+++ +NIQLP L Sbjct: 580 ESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTL 639 Query: 549 LSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREK-Q 725 LSRFDL++L+ D D D RLA H+ ++ S + + E LDM +++ YIA Sbjct: 640 LSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEE-QVEEEFLDMAVLKDYIAYAHSTIM 698 Query: 726 PTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDV 905 P + E + + AYV MR+ +S+ R L +++RL+ A A++R + VE DV Sbjct: 699 PRLSEEASQALIEAYVNMRK-IGSSRGMVSAYPRQLESLIRLAEAHAKVRFSNKVEAIDV 757 Query: 906 NEA 914 EA Sbjct: 758 EEA 760 >ref|NP_032589.1| minichromosome maintenance deficient 3 [Mus musculus] Length = 812 Score = 254 bits (648), Expect = 1e-67 Identities = 154/349 (44%), Positives = 205/349 (58%), Gaps = 49/349 (14%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQS-PRGMKIRGNINICLMGDPGVAKSQLLSY 194 +LA S+AP I+GH+ VKKA ++ G IRG+INI L+GDP VAKSQLL Y Sbjct: 298 QLARSLAPSIHGHDYVKKAILCLLLGGVERELENGSHIRGDINILLIGDPSVAKSQLLRY 357 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 + APR+ TTGRGSSGVGLTAAV D +GE LE GA+VLAD+GV CIDEFDKM++ Sbjct: 358 VLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDM 417 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRTAIHEVMEQ ++IAKAGI LNARCS+LAAANP YGRY+ ++ +NI L +LLS Sbjct: 418 DRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLS 477 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQH------------------------------ 644 RFDLL+++ D+ D + D ++ H+ +HQ+ Sbjct: 478 RFDLLFIMLDQMDPEQDREISDHVLRMHQYRAPGEQDGDALPLGSSVDILATDDPDFTQD 537 Query: 645 SRQPPAQFEPLDMKL---------------MRRYIAMCREKQPTVPESLADYITAAYVEM 779 +Q +E D L M++YI + + +PT+ + A YI Y + Sbjct: 538 DQQDTRIYEKHDSLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPTLTQESAAYIAEEYSRL 597 Query: 780 RREAWASKDATYTS---ARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 R + S D TS ARTL ++RL+TA A+ RM TV+ +D EA+ Sbjct: 598 RSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAV 646 >ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin [Mus musculus] Length = 904 Score = 251 bits (641), Expect = 8e-67 Identities = 140/323 (43%), Positives = 205/323 (63%), Gaps = 23/323 (7%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPRGM-KIRGNINICLMGDPGVAKSQLLSY 194 K+ ASIAP IYGHED+K+ ++P G K+RG+IN+ L GDPG AKSQ L Y Sbjct: 476 KIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKY 535 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 I++++ R+ +TTG+G+S VGLTA V R VS E TLE GALVLAD+GVC IDEFDKM + Sbjct: 536 IEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQ 595 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQ+ISI+KAGI+T+L ARC+++AAANP GRY+P + +N+ L ++S Sbjct: 596 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 655 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQ---------------------FE 671 RFD+L +++D D D LA+ + V H R P+ E Sbjct: 656 RFDVLCVVRDTVDPVQDEMLARFV--VGSHVRHHPSNKKDEGLTNGGTLEPAMPNTYGVE 713 Query: 672 PLDMKLMRRYIAMCREK-QPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILR 848 PL +++++YI +E+ +P + + D + Y ++R+E+ A+ T R + +++R Sbjct: 714 PLPQEVLKKYIIYAKERVRPKLNQMDQDKVARMYSDLRKESMATGSIPIT-VRHIESMIR 772 Query: 849 LSTALARLRMVDTVEKEDVNEAI 917 ++ A AR+ + D V ++DVN AI Sbjct: 773 MAEAHARMHLRDYVMEDDVNMAI 795 >ref|NP_032593.1| minichromosome maintenance protein 6 [Mus musculus] Length = 821 Score = 242 bits (618), Expect = 4e-64 Identities = 129/301 (42%), Positives = 188/301 (62%), Gaps = 3/301 (0%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXXXXXXXXXDQSP-RGMKIRGNINICLMGDPGVAKSQLLSYI 197 L S+ P I+G+++VK+ ++ G +RG+IN+C++GDP AKSQ L ++ Sbjct: 350 LCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHV 409 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 D +PR+ YT+G+ SS GLTAAV+RD S E +E GAL+LAD GVCCIDEFDKM D Sbjct: 410 DEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDMRD 469 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 + AIHE MEQQTISI KAG+ TLNAR SILAAANP G Y+ +SL+QNI L A ++SR Sbjct: 470 QVAIHEAMEQQTISITKAGVKATLNARTSILAAANPVSGHYDRSKSLKQNINLSAPIMSR 529 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTVP 737 FDL +++ D + D +A+ I +H + + LD +RRY+ R+ +P + Sbjct: 530 FDLFFILVDECNEVTDYAIARRIVDLHSRIEESIDRVYSLDD--IRRYLLFARQFKPKIS 587 Query: 738 ESLADYITAAYVEMRRE--AWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNE 911 + D+I Y +R+ + +K + + R L +++RLS ++AR+ D V+ + V E Sbjct: 588 KESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLSESMARMHCCDEVQPKHVKE 647 Query: 912 A 914 A Sbjct: 648 A 648 >ref|NP_032592.1| minichromosome maintenance deficient 5, cell division cycle 46 [Mus musculus] Length = 733 Score = 239 bits (609), Expect = 4e-63 Identities = 133/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%) Frame = +3 Query: 21 LAASIAPEIYGHEDVKKAXX-XXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 ++ SI+P I+G D+KKA + P G+ RG+IN+ ++GDPG AKSQLL ++ Sbjct: 334 ISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFV 393 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 ++ +P YT+G+GSS GLTA+V+RD S +EGGA+VLAD GV CIDEFDKM E D Sbjct: 394 EKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDD 453 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 R AIHE MEQQTISIAKAGI TTLN+RCS+LAAAN +GR++ + E NI +LSR Sbjct: 454 RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSR 512 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHS-RQPPAQFEPLDMKLMRRYIAMCREK-QPT 731 FD++++++D + + D+ LA+H+ +H + Q A +D+ M+++IA CR + P Sbjct: 513 FDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQAVEGEIDLAKMKKFIAYCRARCGPR 572 Query: 732 VPESLADYITAAYVEMRREA-WASKDATYTSA-----RTLLAILRLSTALARLRMVDTVE 893 + A+ + Y+ MR A +D+ S+ R L AI+R++ AL+++++ Sbjct: 573 LSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFAT 632 Query: 894 KEDVNEAI 917 + DV EA+ Sbjct: 633 EADVEEAL 640 >ref|NP_082106.2| minichromosome maintenance deficient domain containing 1 [Mus musculus] Length = 1290 Score = 208 bits (529), Expect = 8e-54 Identities = 121/301 (40%), Positives = 183/301 (60%), Gaps = 1/301 (0%) Frame = +3 Query: 18 KLAASIAPEIYGHEDVKKAXXXXXXXXXDQSPR-GMKIRGNINICLMGDPGVAKSQLLSY 194 ++ AS+ P+++G VK A ++ G ++RG ++ L+GDPG KSQ L Y Sbjct: 461 EILASLCPQVFGMYLVKLAVAMVLAGGIQRTDAAGTRVRGESHLLLVGDPGTGKSQFLKY 520 Query: 195 IDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEA 374 ++ PRS TTG GS+ GLT ++DS GE LE GALVLAD G+CCIDEF+ + E Sbjct: 521 AAKITPRSVLTTGIGSTSAGLTVTAVKDS--GEWNLEAGALVLADAGLCCIDEFNSLKEH 578 Query: 375 DRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 554 DRT+IHE MEQQTIS+AKAG++ LN R +ILAA NP G+Y+P+ S+ NI L + LLS Sbjct: 579 DRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPK-GQYDPKESVSVNIALGSPLLS 637 Query: 555 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPAQFEPLDMKLMRRYIAMCREKQPTV 734 RFDL+ ++ D + D D ++ +++ ++ P M+ M+ Y + R PT+ Sbjct: 638 RFDLVLVLLDTRNEDWDRIIS---SFILENKGYPSKSENLWSMEKMKTYFCLIRNLHPTL 694 Query: 735 PESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDTVEKEDVNEA 914 E +++ + Y +M+R++ S++A T+ R L +++RL+ A ARL V ED A Sbjct: 695 SE-VSNQVLLRYYQMQRQS-DSRNAARTTIRLLESLIRLAEAHARLMFRSAVTLEDAVTA 752 Query: 915 I 917 + Sbjct: 753 V 753 >ref|NP_079952.2| minichromosome maintenance deficient 8 [Mus musculus] Length = 805 Score = 191 bits (485), Expect = 1e-48 Identities = 117/336 (34%), Positives = 183/336 (54%), Gaps = 40/336 (11%) Frame = +3 Query: 30 SIAPEIYGHEDVKK----AXXXXXXXXXDQSPRGMKIRGNINICLMGDPGVAKSQLLSYI 197 S+ P I+GHE VK A D R + IRG+ ++ ++GDPG+ KSQ+L Sbjct: 374 SLCPVIFGHELVKAGLTLALFGGSQKYADDKNR-IPIRGDPHVLIVGDPGLGKSQMLQAA 432 Query: 198 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEAD 377 +APR Y G ++ GLT + +DS SG+ LE GALVL DQG+C IDEFDKM Sbjct: 433 CNVAPRGVYVCGNTTTSSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGN-Q 491 Query: 378 RTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSR 557 A+ E MEQQ+IS+AKAG++ +L AR SI+AAANP G YN R++ +N+++ +ALLSR Sbjct: 492 HQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKARTVSENLKMGSALLSR 551 Query: 558 FDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQ---------------------------- 653 FDL++++ D P+ +D L++H+ + ++ Sbjct: 552 FDLVFILLDTPNEQHDHLLSEHVIAIRAGKQKAVSSATVTRVLSQDSNTSVLEVVSEKPL 611 Query: 654 -------PPAQFEPLDMKLMRRYIAMCRE-KQPTVPESLADYITAAYVEMRREAWASKDA 809 P Q +P+ +L+R+YI R+ P + A + Y+E+R+++ + Sbjct: 612 SERLKVAPGEQTDPIPHQLLRKYIGYARQYVHPRLSTDAAQALQDFYLELRKQSQRVGSS 671 Query: 810 TYTSARTLLAILRLSTALARLRMVDTVEKEDVNEAI 917 T+ R L +++RL+ A ARL + + +ED + I Sbjct: 672 PITT-RQLESLIRLTEARARLELREEATREDAEDII 706 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,039,599 Number of Sequences: 45328 Number of extensions: 1300151 Number of successful extensions: 6582 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 5063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6558 length of database: 21,768,885 effective HSP length: 103 effective length of database: 17,100,101 effective search space used: 3659421614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)