BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000853 (995 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 826,117 Number of Sequences: 1040 Number of extensions: 18905 Number of successful extensions: 81 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 81 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 90053160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000853 (995 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_776711.1| cAMP responsive element binding protein 3 (luma... 348 3e-96 Alignment gi|XP_885877.1| PREDICTED: similar to cAMP responsive element b... 100 2e-21 Alignment gi|XP_608017.2| PREDICTED: similar to cAMP responsive element b... 100 2e-21 Alignment gi|NP_001029604.1| cAMP responsive element binding protein 3-li... 88 9e-18 Alignment gi|XP_590741.2| PREDICTED: similar to cAMP responsive element b... 69 7e-12 >ref|NP_776711.1| cAMP responsive element binding protein 3 (luman) [Bos taurus] Length = 365 Score = 348 bits (894), Expect = 3e-96 Identities = 190/273 (69%), Positives = 200/273 (73%) Frame = +2 Query: 176 AAPDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLS 355 AAPDEAL +P DWELPLSE+LSDWDVEDFLSCL SPPA L FS+SDP LV HDHTYSLS Sbjct: 25 AAPDEALTSPPDWELPLSESLSDWDVEDFLSCLPSPPAVLNVFSNSDPCLVQHDHTYSLS 84 Query: 356 QEYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXX 535 QE+VSIDLDNE YEKE AQMT LRVE PA+QEI Sbjct: 85 QEHVSIDLDNESYEKERAQMTPLRVEEPADQEIARLILTEEEKRLLEKEGLTLPGMLPLT 144 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 KMEEQVL+RVRRKIRNKKSAQESRRKKKVYVG LESRVLKY+AQNLELQNKVQLLEEQN Sbjct: 145 KMEEQVLKRVRRKIRNKKSAQESRRKKKVYVGGLESRVLKYTAQNLELQNKVQLLEEQNL 204 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSR 895 MVIQTANKASSSSTC+ PAMYSSDTRGS PAEH VLSR Sbjct: 205 SLLDQLRRLQAMVIQTANKASSSSTCVLVLLFSFCLLLVPAMYSSDTRGSLPAEHRVLSR 264 Query: 896 QLRALPSEDVPQRDLPALQSEVPQGSSTHELQA 994 QLRALPSED PQ + PALQSEVP+ S ELQA Sbjct: 265 QLRALPSEDPPQLEPPALQSEVPKDSLNPELQA 297 >ref|XP_885877.1| PREDICTED: similar to cAMP responsive element binding protein 3-like 4 isoform 2 [Bos taurus] Length = 257 Score = 100 bits (248), Expect = 2e-21 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 6/128 (4%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV +AQN ELQ KVQ LE N Sbjct: 74 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 133 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 877 +++QT+NKA+ +STC+ P+ S +G P A Sbjct: 134 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 191 Query: 878 HGVLSRQL 901 HGV+SR + Sbjct: 192 HGVISRNI 199 >ref|XP_608017.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 4 isoform 1 [Bos taurus] Length = 257 Score = 100 bits (248), Expect = 2e-21 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 6/128 (4%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV +AQN ELQ KVQ LE N Sbjct: 74 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACAAQNQELQRKVQELERHNI 133 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 877 +++QT+NKA+ +STC+ P+ S +G P A Sbjct: 134 SLVTQLRQLQMLIVQTSNKAAQTSTCVLILLFSLALIILPSF--SPFQGLPEAGPEDYQP 191 Query: 878 HGVLSRQL 901 HGV+SR + Sbjct: 192 HGVISRNI 199 >ref|NP_001029604.1| cAMP responsive element binding protein 3-like 3 [Bos taurus] Length = 456 Score = 88.2 bits (217), Expect = 9e-18 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 4/156 (2%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE++L+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN Sbjct: 233 KYEERMLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 292 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSPP--AEHG 883 +V+Q+ +K++ + TCI P++ ++S+ SP A Sbjct: 293 SLLEQLKKLQAIVVQSTSKSAQTGTCIAVLLFSFALIVLPSISPFASNRAESPGDFAPVR 352 Query: 884 VLSRQLRALPSEDVPQRDLPALQSEVPQGSSTHELQ 991 V SR L + V P ++ P G +T LQ Sbjct: 353 VFSRTLHNDAASRVAPDTAPGSEAPGP-GPNTGALQ 387 >ref|XP_590741.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 1 [Bos taurus] Length = 520 Score = 68.6 bits (166), Expect = 7e-12 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANR 344 Query: 716 XXXXXXXXXXXMVIQTANK-----ASSSSTCI 796 +V ++ A+ + TC+ Sbjct: 345 TLLQQLQKLQTLVTSKISRPYKMAATQTGTCL 376 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,474,826 Number of Sequences: 33508 Number of extensions: 755847 Number of successful extensions: 4696 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 3707 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4674 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 2907111490 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000853 (995 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_006359.3| cAMP responsive element binding protein 3 [Homo... 300 1e-81 Alignment gi|NP_570968.1| cAMP responsive element binding protein 3-like ... 100 3e-21 Alignment gi|NP_115996.1| cAMP responsive element binding protein 3-like ... 86 5e-17 Alignment gi|NP_919047.2| cAMP responsive element binding protein 3-like ... 71 1e-12 Alignment gi|NP_443086.1| cAMP responsive element binding protein 3-like ... 69 8e-12 >ref|NP_006359.3| cAMP responsive element binding protein 3 [Homo sapiens] Length = 371 Score = 300 bits (769), Expect = 1e-81 Identities = 165/269 (61%), Positives = 184/269 (68%) Frame = +2 Query: 179 APDEALEAPLDWELPLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQ 358 APDEA+ APLDW LPLSE SDW+V+D L L SPPASL S S+P LVHHDHTYSL + Sbjct: 26 APDEAVRAPLDWALPLSEVPSDWEVDDLLCSLLSPPASLNILSSSNPCLVHHDHTYSLPR 85 Query: 359 EYVSIDLDNEDYEKEGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXK 538 E VS+DL++E KEG QMT +E AEQEI K Sbjct: 86 ETVSMDLESESCRKEGTQMTPQHMEELAEQEIARLVLTDEEKSLLEKEGLILPETLPLTK 145 Query: 539 MEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXX 718 EEQ+L+RVRRKIRNK+SAQESRRKKKVYVG LESRVLKY+AQN+ELQNKVQLLEEQN Sbjct: 146 TEEQILKRVRRKIRNKRSAQESRRKKKVYVGGLESRVLKYTAQNMELQNKVQLLEEQNLS 205 Query: 719 XXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQ 898 MVI+ +NK SSSSTCI PAMYSSDTRGS PAEHGVLSRQ Sbjct: 206 LLDQLRKLQAMVIEISNKTSSSSTCILVLLVSFCLLLVPAMYSSDTRGSLPAEHGVLSRQ 265 Query: 899 LRALPSEDVPQRDLPALQSEVPQGSSTHE 985 LRALPSED Q +LPALQSEVP+ STH+ Sbjct: 266 LRALPSEDPYQLELPALQSEVPK-DSTHQ 293 >ref|NP_570968.1| cAMP responsive element binding protein 3-like 4 [Homo sapiens] Length = 395 Score = 100 bits (248), Expect = 3e-21 Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 4/136 (2%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL++VRRKIRNK+SAQ+SRR+KK Y+ LESRV SAQN ELQ KVQ LE N Sbjct: 212 KAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 271 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAE----HG 883 ++ QT+NKA+ +STC+ P+ +R +E HG Sbjct: 272 SLVAQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIILPSFSPFQSRPEAGSEDYQPHG 331 Query: 884 VLSRQLRALPSEDVPQ 931 V SR + L +DV + Sbjct: 332 VTSRNI--LTHKDVTE 345 >ref|NP_115996.1| cAMP responsive element binding protein 3-like 3 [Homo sapiens] Length = 461 Score = 85.9 bits (211), Expect = 5e-17 Identities = 42/87 (48%), Positives = 61/87 (70%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN Sbjct: 238 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 297 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCI 796 +V+Q+ +K++ + TC+ Sbjct: 298 SLLEQLKKLQAIVVQSTSKSAQTGTCV 324 >ref|NP_919047.2| cAMP responsive element binding protein 3-like 2 [Homo sapiens] Length = 520 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/59 (59%), Positives = 46/59 (77%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 712 K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 347 >ref|NP_443086.1| cAMP responsive element binding protein 3-like 1 [Homo sapiens] Length = 519 Score = 68.6 bits (166), Expect = 8e-12 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANR 344 Query: 716 XXXXXXXXXXXMVIQTANK-----ASSSSTCI 796 +V ++ A+ + TC+ Sbjct: 345 TLLQQLQKLQTLVTNKISRPYKMAATQTGTCL 376 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,937,630 Number of Sequences: 39411 Number of extensions: 897899 Number of successful extensions: 6253 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 4742 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6211 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 3149807293 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000853 (995 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_854750.1| PREDICTED: similar to cAMP responsive element b... 299 2e-81 Alignment gi|XP_855139.1| PREDICTED: similar to cAMP responsive element b... 97 2e-20 Alignment gi|XP_542164.2| PREDICTED: similar to cAMP responsive element b... 87 3e-17 Alignment gi|XP_548490.2| PREDICTED: similar to cAMP responsive element b... 72 1e-12 Alignment gi|XP_540756.2| PREDICTED: similar to cAMP responsive element b... 69 9e-12 >ref|XP_854750.1| PREDICTED: similar to cAMP responsive element binding protein 3 [Canis familiaris] Length = 411 Score = 299 bits (766), Expect = 2e-81 Identities = 165/258 (63%), Positives = 179/258 (69%) Frame = +2 Query: 221 PLSEALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHTYSLSQEYVSIDLDNEDYEK 400 PLSEALS+W+ EDFLS + SPPASL S SD LVHHDHTYSLSQ++VSIDLD Y K Sbjct: 86 PLSEALSEWEAEDFLSSMLSPPASLNVLSSSDSCLVHHDHTYSLSQQHVSIDLDGGSYGK 145 Query: 401 EGAQMTSLRVEAPAEQEIGXXXXXXXXXXXXXXXXXXXXXXXXXXKMEEQVLRRVRRKIR 580 E AQ T L+VE PAEQEI KMEEQVL RVRRKIR Sbjct: 146 EEAQTTPLQVEEPAEQEIARLILTDEEKRLLEKEGLTLHGTLPLTKMEEQVLTRVRRKIR 205 Query: 581 NKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNXXXXXXXXXXXXMVIQ 760 NKKSAQESRRKKKVY+G LE+RVLKY+AQNLELQNKVQLLEEQN M+IQ Sbjct: 206 NKKSAQESRRKKKVYLGGLENRVLKYTAQNLELQNKVQLLEEQNLSLLDQLRRLQAMLIQ 265 Query: 761 TANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEHGVLSRQLRALPSEDVPQRDL 940 +NK SSSSTC+ PAMYSSDTRGS PAEHGVLSRQLRALPSED Q +L Sbjct: 266 ISNKTSSSSTCVLVLLFSFCLLIVPAMYSSDTRGSLPAEHGVLSRQLRALPSEDPHQLEL 325 Query: 941 PALQSEVPQGSSTHELQA 994 PALQSEVP+ SS ELQA Sbjct: 326 PALQSEVPKDSSDQELQA 343 >ref|XP_855139.1| PREDICTED: similar to cAMP responsive element binding protein 3-like 4 [Canis familiaris] Length = 384 Score = 97.1 bits (240), Expect = 2e-20 Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 6/128 (4%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL+++RRKIRNK+SAQ+SRR+KK Y+ LESRV SAQN ELQ KVQ LE N Sbjct: 201 KAEERVLKKIRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNI 260 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPA------E 877 ++ QT+NKA+ +STC+ P++ S +G A Sbjct: 261 SLVTQLRQLQTLIAQTSNKAAQTSTCVLILLFSLALIVLPSV--SPLQGLREAGSEDYQP 318 Query: 878 HGVLSRQL 901 HGV+SR + Sbjct: 319 HGVISRNI 326 >ref|XP_542164.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 3 [Canis familiaris] Length = 609 Score = 86.7 bits (213), Expect = 3e-17 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN Sbjct: 358 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNL 417 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPA----MYSSDTRGSPPAEHG 883 +V+Q+ +K++ + TC+ P+ + + A Sbjct: 418 SLLEQLKKLQAIVVQSTSKSAQTGTCLAVLLFSFALIVLPSISPFVANKAKHAGDYAPVR 477 Query: 884 VLSRQLRALPSEDVPQRDLPALQSEVPQ 967 V SR L P+ V +P ++ P+ Sbjct: 478 VFSRTLHNDPASRVAPDAIPGSEAPGPR 505 >ref|XP_548490.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 2 [Canis familiaris] Length = 393 Score = 71.6 bits (174), Expect = 1e-12 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N Sbjct: 186 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTNR 245 Query: 716 XXXXXXXXXXXMVIQTANK-----ASSSSTCIX-----XXXXXXXXXXXPAMYSSDTRGS 865 +V+ ++ + + TC+ Y S T+ + Sbjct: 246 TLLQQLQKLQTLVMGKVSRTCKLAGTQTGTCLMVVVLCFAVAFGSFFQGYGPYPSATKMA 305 Query: 866 PPAEHGV 886 P++H V Sbjct: 306 LPSQHSV 312 >ref|XP_540756.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 1 [Canis familiaris] Length = 725 Score = 68.6 bits (166), Expect = 9e-12 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V ++++N EL KV+ LE N Sbjct: 490 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANR 549 Query: 716 XXXXXXXXXXXMVIQTANK-----ASSSSTCI 796 +V ++ A+ + TC+ Sbjct: 550 TLLQQLQKLQTLVTNKISRPYKMAATQTGTCL 581 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,915,312 Number of Sequences: 33732 Number of extensions: 891159 Number of successful extensions: 5768 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 4556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5740 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3600614532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-000853 (995 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_038525.1| cAMP responsive element binding protein 3 [Mus ... 233 2e-61 Alignment gi|NP_084356.1| androgen-induced basic leucine zipper [Mus musc... 96 8e-20 Alignment gi|NP_663340.1| cAMP responsive element binding protein 3-like ... 86 5e-17 Alignment gi|NP_848776.1| cAMP responsive element binding protein 3-like ... 72 9e-13 Alignment gi|XP_919654.2| PREDICTED: similar to cAMP responsive element b... 71 2e-12 Alignment gi|NP_036087.1| cAMP responsive element binding protein 3-like ... 70 4e-12 >ref|NP_038525.1| cAMP responsive element binding protein 3 [Mus musculus] Length = 379 Score = 233 bits (594), Expect = 2e-61 Identities = 145/275 (52%), Positives = 166/275 (60%), Gaps = 5/275 (1%) Frame = +2 Query: 176 AAPDEALEAPLDWELPLSE----ALSDWDVEDFLSCLSSPPASLTDFSHSDPYLVHHDHT 343 AA + ++APLD EL SE LSDW+VED LS L SP AS D S + HDH Sbjct: 31 AATEPDVKAPLDLELSPSENSVQELSDWEVEDLLSSLLSPSAS-RDVLGSSSSSILHDHN 89 Query: 344 YSLSQEYVSIDLDNEDYEKEGAQMTSLR-VEAPAEQEIGXXXXXXXXXXXXXXXXXXXXX 520 YSL QE+VSIDLD E +EKEG +T L E AEQE+ Sbjct: 90 YSLPQEHVSIDLDTESFEKEGFHVTPLPGEERAAEQEMSRLILTEEEKKLLEKEGLTLPS 149 Query: 521 XXXXXKMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLL 700 K+EEQVL+RVRRKIRNK++AQESR+KKKVYV LESRVLKY+AQN ELQNKVQ L Sbjct: 150 TLPLTKVEEQVLKRVRRKIRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRL 209 Query: 701 EEQNXXXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMYSSDTRGSPPAEH 880 EEQN MVI+ ANK SS STC+ PAMYSSD RGS PAE+ Sbjct: 210 EEQNLSLLDQLRKLQAMVIEIANKTSSGSTCVLVLVFSFCLLLVPAMYSSDARGSVPAEY 269 Query: 881 GVLSRQLRALPSEDVPQRDLPALQSEVPQGSSTHE 985 VL R+LRALPSED Q AL SE+P STH+ Sbjct: 270 VVLHRKLRALPSEDDHQPKPSALSSELPM-DSTHQ 303 >ref|NP_084356.1| androgen-induced basic leucine zipper [Mus musculus] Length = 370 Score = 95.5 bits (236), Expect = 8e-20 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 8/157 (5%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE++L+++RRKIRNK+SAQ+SRR+KK Y+ LESRV S QN +LQ KVQ LE QN Sbjct: 188 KAEERILKKIRRKIRNKQSAQDSRRRKKEYLDGLESRVAACSEQNQKLQRKVQELERQNI 247 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAMY----SSDTRGSPPAEHG 883 + QT+++A+ +STC+ P+ S+ R HG Sbjct: 248 FLMEQVRQLQKLTAQTSSRAAQTSTCVLILLFSLALIILPSFSPFQGQSEARPEDYQLHG 307 Query: 884 VLSRQLRALPSEDVPQR-DLPALQS---EVPQGSSTH 982 V+SR + L E+V + + P L+S E+P+ +T+ Sbjct: 308 VISRNI--LTHENVTENLESPVLKSKLEELPEAPTTN 342 >ref|NP_663340.1| cAMP responsive element binding protein 3-like 3 [Mus musculus] Length = 479 Score = 86.3 bits (212), Expect = 5e-17 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+VL+++RRKIRNK+SAQESR+KKK Y+ LE+R+ +AQN ELQ KV LE+QN Sbjct: 234 KYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLENRMSACTAQNQELQRKVLHLEKQNL 293 Query: 716 XXXXXXXXXXXMVIQTANKASSSSTCIXXXXXXXXXXXXPAM--YSSDTRGSP 868 +V+Q+ +K + + TCI P++ ++S+ SP Sbjct: 294 SLLEQLKHLQALVVQSTSKPAHAGTCIAVLLLSFALIILPSISPFNSNKVDSP 346 >ref|NP_848776.1| cAMP responsive element binding protein 3-like 2 [Mus musculus] Length = 521 Score = 72.0 bits (175), Expect = 9e-13 Identities = 35/59 (59%), Positives = 47/59 (79%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 712 K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE+ N Sbjct: 289 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLEDTN 347 >ref|XP_919654.2| PREDICTED: similar to cAMP responsive element binding protein 3-like 2 [Mus musculus] Length = 477 Score = 71.2 bits (173), Expect = 2e-12 Identities = 35/59 (59%), Positives = 46/59 (77%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQN 712 K EE+ L+++RRKI+NK SAQESRRKKK Y+ SLE +V S +NLEL+ KV++LE N Sbjct: 245 KSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTN 303 >ref|NP_036087.1| cAMP responsive element binding protein 3-like 1 [Mus musculus] Length = 507 Score = 69.7 bits (169), Expect = 4e-12 Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Frame = +2 Query: 536 KMEEQVLRRVRRKIRNKKSAQESRRKKKVYVGSLESRVLKYSAQNLELQNKVQLLEEQNX 715 K EE+ L+RVRRKI+NK SAQESRRKKK YV LE +V Y+++N EL KV+ LE N Sbjct: 285 KAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETANR 344 Query: 716 XXXXXXXXXXXMVIQTANK-----ASSSSTCI 796 +V ++ A+ + TC+ Sbjct: 345 TLLQQLQKLQTLVTSKISRPYKMAATQTGTCL 376 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,229,010 Number of Sequences: 45328 Number of extensions: 1009965 Number of successful extensions: 6916 Number of sequences better than 1.0e-05: 6 Number of HSP's better than 0.0 without gapping: 5124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6820 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 3871433471 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)