BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001693 (931 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 828,111 Number of Sequences: 1040 Number of extensions: 19389 Number of successful extensions: 67 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 67 length of database: 434,620 effective HSP length: 76 effective length of database: 355,580 effective search space used: 82850140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001693 (931 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001029502.1| hypothetical protein LOC508735 [Bos taurus] 454 e-128 >ref|NP_001029502.1| hypothetical protein LOC508735 [Bos taurus] Length = 521 Score = 454 bits (1168), Expect = e-128 Identities = 226/247 (91%), Positives = 229/247 (92%) Frame = +3 Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESG+LGKEGLKAGIEAGNINITSGEVFEIE Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIE 75 Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135 Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674 LSVVGTDAL YQQTWYHEGP+SLKVARLWIANYSLPRAMKRLEEA Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPHSLKVARLWIANYSLPRAMKRLEEA 195 Query: 675 RLHKEIPETTRTSQMPELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLWQ 854 RLHKEIPETTRTSQM ELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGL + Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255 Query: 855 LWSVPDC 875 LWSVPDC Sbjct: 256 LWSVPDC 262 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,848,516 Number of Sequences: 33508 Number of extensions: 740098 Number of successful extensions: 3017 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 2748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3015 length of database: 16,112,626 effective HSP length: 101 effective length of database: 12,728,318 effective search space used: 2647490144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001693 (931 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_004688.2| PRP4 pre-mRNA processing factor 4 homolog [Homo... 456 e-128 >ref|NP_004688.2| PRP4 pre-mRNA processing factor 4 homolog [Homo sapiens] Length = 522 Score = 456 bits (1172), Expect = e-128 Identities = 227/247 (91%), Positives = 229/247 (92%) Frame = +3 Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGK+GLKAGIEAGNINITSGEVFEIE Sbjct: 17 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIE 76 Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI Sbjct: 77 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 136 Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674 LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA Sbjct: 137 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 196 Query: 675 RLHKEIPETTRTSQMPELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLWQ 854 RLHKEIPETTRTSQM ELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGL + Sbjct: 197 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 256 Query: 855 LWSVPDC 875 LWSVPDC Sbjct: 257 LWSVPDC 263 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,922,333 Number of Sequences: 39411 Number of extensions: 851774 Number of successful extensions: 3340 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 2967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3334 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 2847205719 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001693 (931 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing ... 457 e-129 >ref|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing factor 4 homolog [Canis familiaris] Length = 521 Score = 457 bits (1175), Expect = e-129 Identities = 228/247 (92%), Positives = 229/247 (92%) Frame = +3 Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 75 Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135 Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674 LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 195 Query: 675 RLHKEIPETTRTSQMPELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLWQ 854 RLHKEIPETTRTSQM ELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGL + Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255 Query: 855 LWSVPDC 875 LWSVPDC Sbjct: 256 LWSVPDC 262 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,333,922 Number of Sequences: 33732 Number of extensions: 871406 Number of successful extensions: 3430 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 3047 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3428 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3253186814 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001693 (931 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_081573.1| PRP4 pre-mRNA processing factor 4 homolog [Mus ... 457 e-129 >ref|NP_081573.1| PRP4 pre-mRNA processing factor 4 homolog [Mus musculus] Length = 521 Score = 457 bits (1175), Expect = e-129 Identities = 228/247 (92%), Positives = 229/247 (92%) Frame = +3 Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 75 Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135 Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674 LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 195 Query: 675 RLHKEIPETTRTSQMPELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLWQ 854 RLHKEIPETTRTSQM ELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGL + Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255 Query: 855 LWSVPDC 875 LWSVPDC Sbjct: 256 LWSVPDC 262 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,502,717 Number of Sequences: 45328 Number of extensions: 996184 Number of successful extensions: 3928 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 3392 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3925 length of database: 21,768,885 effective HSP length: 103 effective length of database: 17,100,101 effective search space used: 3522620806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)