Animal-Genome cDNA 20060611C-001908


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-001908
         (1221 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr...   629   0.0  
Alignment   gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ...    62   4e-11
Alignment   gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [...    60   1e-10
Alignment   gi|NP_998992.1| carbonyl reductase [Sus scrofa]                       49   2e-07

>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
          Length = 400

 Score =  629 bits (1623), Expect = 0.0
 Identities = 314/362 (86%), Positives = 315/362 (87%)
 Frame = +3

Query: 135  MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
            MESWPWPSGGAW                                DWLCQR          
Sbjct: 1    MESWPWPSGGAWLLVAARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALVV 60

Query: 315  XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
                GWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG
Sbjct: 61   LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 120

Query: 495  AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
            AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS
Sbjct: 121  AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 180

Query: 675  PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
            PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA
Sbjct: 181  PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 240

Query: 855  LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034
            LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI
Sbjct: 241  LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 300

Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214
            EHLNGQFLHSLSQGLPDLSPVVDAITDALLAA PRHRYYPGHGLGLMYFIHYYLP+GLRR
Sbjct: 301  EHLNGQFLHSLSQGLPDLSPVVDAITDALLAAKPRHRYYPGHGLGLMYFIHYYLPEGLRR 360

Query: 1215 RF 1220
            RF
Sbjct: 361  RF 362


>ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa]
          Length = 292

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 4/190 (2%)
 Frame = +3

Query: 354 RPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLK 533
           RP+ L    + V++TG   G G+  A  L  MG  V+ T     +   + L+   S  L+
Sbjct: 28  RPEML--RGKKVIVTGASKGIGREMAYHLARMGAHVVVT-----ARSEETLKKVVSHSLE 80

Query: 534 LLQMDLTKPADISRVLEFTKVHTASTG--LWGLVNNAGHNILVA--DAELSPVATYRSCM 701
           L        A     + F +   A  G  L GL     ++I  A   +    +   R  M
Sbjct: 81  LGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITQAFMTSVYDDIHLVRRSM 140

Query: 702 EVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCE 881
           EVNF   + ++ A LP+L++S+G IV VSS AG M  P ++ Y  SK A+     S + E
Sbjct: 141 EVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200

Query: 882 LQPWGVKVSV 911
                V VS+
Sbjct: 201 YSVTKVNVSI 210


>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
          Length = 260

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 11/203 (5%)
 Frame = +3

Query: 360 QRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLA----------TVLELDSPGAQELR 509
           +R P+  +  L+T    G G A A++L   G  V+           TV  L   G     
Sbjct: 8   RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTG 67

Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
             C          + K  D  R++          G+  LV+NA  N    +   +    +
Sbjct: 68  TVCH---------VGKAEDRERLVAMAV--NLHGGVDILVSNAAVNPFFGNIIDATEEVW 116

Query: 690 RSCMEVNFFGTLEMTKALLPLL-RRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMD 866
              + VN   T+ MTKA++P + +R  G ++ VSS     PFP L  Y  SK A+  L  
Sbjct: 117 DKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTK 176

Query: 867 SFSCELQPWGVKVSVIQPACFRT 935
           + + EL P  ++V+ + P   +T
Sbjct: 177 NLAVELAPRNIRVNCLAPGLIKT 199


>ref|NP_998992.1| carbonyl reductase [Sus scrofa]
          Length = 244

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 2/200 (1%)
 Frame = +3

Query: 390 LITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADI 569
           L+TG   G G+ T K L   G  V+A V   +       + C  P ++ + +DL      
Sbjct: 11  LVTGAGKGIGRDTVKALHVSGARVVA-VTRTNGDLVSLSQEC--PGIEPVCVDLGDWEAT 67

Query: 570 SRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLP 749
            R L           L  LVNNA   ++    + +     RS   VN     ++++ +  
Sbjct: 68  ERALG----GVGPVDL--LVNNAAVALMQPFLDTTKEVFDRS-FNVNLRSVFQVSQIVAR 120

Query: 750 LL--RRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPA 923
            +  R   G IV VSS    + +P L+AY ++K A+ +L  S + EL P  ++V+ + P 
Sbjct: 121 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 180

Query: 924 CFRTEAVKNVDQWEERKRQL 983
              T   ++V    E  R+L
Sbjct: 181 VVLTAMGRSVTSDPELARKL 200


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,128,451
Number of Sequences: 1040
Number of extensions: 30615
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 115254420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-001908
         (1221 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777067.1| hydroxysteroid (11-beta) dehydrogenase 2 [Bos t...   570   e-163
Alignment   gi|XP_593783.2| PREDICTED: similar to hydroxysteroid (17-beta) ...   209   4e-54
Alignment   gi|NP_001029772.1| 3-hydroxybutyrate dehydrogenase, type 1 [Bos...   173   2e-43
Alignment   gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus]       161   1e-39
Alignment   gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ...   151   9e-37
Alignment   gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent...   150   2e-36
Alignment   gi|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos...   148   7e-36
Alignment   gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent...   147   2e-35
Alignment   gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent...   147   2e-35
Alignment   gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent...   147   2e-35

>ref|NP_777067.1| hydroxysteroid (11-beta) dehydrogenase 2 [Bos taurus]
          Length = 404

 Score =  570 bits (1469), Expect = e-163
 Identities = 282/362 (77%), Positives = 297/362 (82%)
 Frame = +3

Query: 135  MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
            MESWPWPSGGAW                                DWLCQR          
Sbjct: 1    MESWPWPSGGAWLLVPARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALAV 60

Query: 315  XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
                GWI LSRLARPQRLPVATRAVLITGCDSGFG ATAKKLD MGFTVLATVL+L+SPG
Sbjct: 61   LAATGWIVLSRLARPQRLPVATRAVLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPG 120

Query: 495  AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
            A ELRACCS RLKLLQMDLTKP DISRVLEFTKVHT STGLWGLVNNAG NI VADAEL 
Sbjct: 121  ALELRACCSSRLKLLQMDLTKPGDISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELC 180

Query: 675  PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
            PVAT+R+CMEVNFFG LEMTK LLPLLRRSSGRIVTVSSPAGDMPFPCL+AYGTSKAA+A
Sbjct: 181  PVATFRTCMEVNFFGALEMTKGLLPLLRRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALA 240

Query: 855  LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034
            LLM +FSCEL PWGVKVS+IQPACF+TE+VK+V QWEERK+QLLATLPQELLQAYGEDYI
Sbjct: 241  LLMGNFSCELLPWGVKVSIIQPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYI 300

Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214
            EHLNGQFLHSLSQ LPDLSPVVDAITDALLAA P  RYYPGHGLGL+YFIHYYLP+GLR+
Sbjct: 301  EHLNGQFLHSLSQALPDLSPVVDAITDALLAAQPLRRYYPGHGLGLIYFIHYYLPEGLRQ 360

Query: 1215 RF 1220
            RF
Sbjct: 361  RF 362


>ref|XP_593783.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2,
            partial [Bos taurus]
          Length = 308

 Score =  209 bits (532), Expect = 4e-54
 Identities = 113/256 (44%), Positives = 152/256 (59%), Gaps = 1/256 (0%)
 Frame = +3

Query: 393  ITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADIS 572
            + GCDSGFG   AK LD +GFTV A VL+    GA+ELR  CS  L +LQ+++T   +I 
Sbjct: 8    LAGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQLNITNTQEIK 67

Query: 573  RVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPL 752
                  K    + GLW ++NNAG   L  D EL P+  Y+ CM VNFFG +E+TK  LPL
Sbjct: 68   AAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAVEVTKVFLPL 127

Query: 753  LRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFR 932
            LR+S GR+V +SS AG +P   ++AYG+SKAA+ +       EL  WGVKVSVIQP  F+
Sbjct: 128  LRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQPGGFK 187

Query: 933  TEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGL-PDLSPVVDAI 1109
            T        WE+ +R +L  L  E+ + YG+DYI      FL+ +     PD+SPV+  +
Sbjct: 188  TNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILS-ERSFLNLMKTSTDPDISPVLLDV 246

Query: 1110 TDALLAANPRHRYYPG 1157
              A+ A +P   Y PG
Sbjct: 247  RHAISAQSPFAFYAPG 262


>ref|NP_001029772.1| 3-hydroxybutyrate dehydrogenase, type 1 [Bos taurus]
          Length = 344

 Score =  173 bits (439), Expect = 2e-43
 Identities = 108/277 (38%), Positives = 149/277 (53%), Gaps = 15/277 (5%)
 Frame = +3

Query: 369  PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELD--SPGAQELRACCSPRLKLLQ 542
            PV ++AVLITGCDSGFG + AK L + GF V A  L  D  S G +EL +  S RL+ +Q
Sbjct: 52   PVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRTVQ 111

Query: 543  MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
            +++ K  ++ +  E  +  +     GLWGLVNNAG +    D E + + TY+   EVN +
Sbjct: 112  LNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 170

Query: 717  GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
            GT+ +TKA LPL+RR+ GR+V +SS  G M     S Y  +K  V    D    E+ P G
Sbjct: 171  GTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHPLG 230

Query: 897  VKVSVIQPACF-----------RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHL 1043
            VKVSV++P  F           R +A+ N   WEE        LP+ + Q YG  Y +  
Sbjct: 231  VKVSVVEPGNFIAATSLYGGTERIQAIAN-KMWEE--------LPEVVRQDYGRKYFDEK 281

Query: 1044 NGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYP 1154
              +     + G  D SPV+ A+T AL A  P  RY+P
Sbjct: 282  VARMESYCTSGSTDTSPVIKAVTHALTATTPYTRYHP 318


>ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus]
          Length = 317

 Score =  161 bits (407), Expect = 1e-39
 Identities = 102/274 (37%), Positives = 145/274 (52%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNQLARQLDLRGLRVLAGCLT--EQGAEQLRNQTSDRLQTVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I+   E+ K      GLWGLVNNAG       AE   + TYR  + VN  G +E+T ++L
Sbjct: 90   IAAATEWVKECVGDRGLWGLVNNAGIFHSHGYAEWIKIETYRDTLRVNLIGVIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GRIV VSS  G + F   + Y  SK  V    D    ELQ +GVKVS+++P  
Sbjct: 150  PLVRKAQGRIVNVSSILGRIAF-FGAVYSCSKYGVEAFSDILRRELQHFGVKVSMVEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            FRT A+ +  ++ E  +Q+    P  + + YG+ + +  +      L     +L+ V D 
Sbjct: 209  FRT-AMTDWQKFSEIMKQIWKETPAHIKETYGQKFFDAYHDLMKQGLLSCSTNLNLVTDC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL + +PR RY  G      +    YLP  L
Sbjct: 268  MEHALTSVHPRTRYSAGWDAQFFFVPLSYLPTSL 301


>ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus]
          Length = 319

 Score =  151 bits (382), Expect = 9e-37
 Identities = 93/262 (35%), Positives = 142/262 (54%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            +  + + ITGCD+GFG   A+  D  GF V+A  L     G+  L+A  S RL  + +D+
Sbjct: 27   ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLHTVLLDV 84

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T P ++ R  ++ K      GLWGL+NNAG   ++A  +   V  YR  +EVN FG + +
Sbjct: 85   TDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVEVNLFGLISV 144

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  +LPL++++ GRI+ VSS  G + F     Y  SK AV    DS   +++ +GV V+ 
Sbjct: 145  TLNMLPLVKKARGRIINVSSIGGRLAFGG-GGYSPSKYAVEGFNDSLRRDMKAFGVHVAC 203

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  F+T  + + ++  E+K  +   L  ++ Q YGE YIE    Q   + S    DLS
Sbjct: 204  IEPGLFKTN-LSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTASFVNVDLS 262

Query: 1092 PVVDAITDALLAANPRHRYYPG 1157
             VV+ +  AL +  P+ RY  G
Sbjct: 263  LVVECMDHALTSLFPKTRYAAG 284


>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 4 [Bos taurus]
          Length = 317

 Score =  150 bits (379), Expect = 2e-36
 Identities = 100/274 (36%), Positives = 143/274 (52%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            ++   E+ K      GLWGLVNNAG +   A  E      +   ++VN  G +++T ++L
Sbjct: 90   VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V VSS  G +       Y  SK  V    DS   EL  +GVKV +I+P  
Sbjct: 150  PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F+T AV +     +  +        E+ + YGE++ +    Q + + S  L DLS V + 
Sbjct: 209  FKT-AVTSPKALSQGFQASWNQASPEIKELYGENHGKLALEQLIFTSSDLLFDLSLVTNC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL A +PR RY PG     +Y    YLP  L
Sbjct: 268  MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301


>ref|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos taurus]
          Length = 319

 Score =  148 bits (374), Expect = 7e-36
 Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 3/277 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            + ITGCDSGFG+  A +LD  GF VLA+ L     GA++L+   S RL    +D+T P  
Sbjct: 32   IFITGCDSGFGRLLALRLDQRGFRVLASCLT--PSGAEDLQRVASSRLHTTLLDVTDPQS 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I + +++ + H    GL+GLVNNAG   ++          ++  + VN  G + +T ALL
Sbjct: 90   IRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTLGPIGVTLALL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PLL ++ GR++ ++S  G +       Y  SK  +    DS   ++ P+GV+VS+++P  
Sbjct: 150  PLLLQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGF 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---HLNGQFLHSLSQGLPDLSPV 1097
            FRT  V N++  E+  +   A LP      YGE ++     +  + ++ +    PDL+ V
Sbjct: 209  FRT-PVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMICD--PDLAKV 265

Query: 1098 VDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
               +  AL A +PR RY PG    L++    YLP  L
Sbjct: 266  SRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARL 302


>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 5 [Bos taurus]
          Length = 317

 Score =  147 bits (371), Expect = 2e-35
 Identities = 98/274 (35%), Positives = 140/274 (51%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            ++   E+ K      GLWGLVNNAG +   A  E      +   ++VN  G +++T ++L
Sbjct: 90   VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V VSS  G +       Y  SK  V    DS   EL  +GVKV +I+P  
Sbjct: 150  PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F+T AV +     +  +        E+ + YGE ++ +L        +    DLS V + 
Sbjct: 209  FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL A +PR RY PG     +Y    YLP  L
Sbjct: 268  MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301


>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 3 [Bos taurus]
          Length = 317

 Score =  147 bits (371), Expect = 2e-35
 Identities = 98/274 (35%), Positives = 140/274 (51%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            ++   E+ K      GLWGLVNNAG +   A  E      +   ++VN  G +++T ++L
Sbjct: 90   VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V VSS  G +       Y  SK  V    DS   EL  +GVKV +I+P  
Sbjct: 150  PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F+T AV +     +  +        E+ + YGE ++ +L        +    DLS V + 
Sbjct: 209  FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL A +PR RY PG     +Y    YLP  L
Sbjct: 268  MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301


>ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 2 [Bos taurus]
          Length = 317

 Score =  147 bits (371), Expect = 2e-35
 Identities = 98/274 (35%), Positives = 140/274 (51%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            ++   E+ K      GLWGLVNNAG +   A  E      +   ++VN  G +++T ++L
Sbjct: 90   VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V VSS  G +       Y  SK  V    DS   EL  +GVKV +I+P  
Sbjct: 150  PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F+T AV +     +  +        E+ + YGE ++ +L        +    DLS V + 
Sbjct: 209  FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL A +PR RY PG     +Y    YLP  L
Sbjct: 268  MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,173,928
Number of Sequences: 33508
Number of extensions: 1162527
Number of successful extensions: 4938
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4867
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 3813593788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-001908
         (1221 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo ...   552   e-157
Alignment   gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ...   236   4e-62
Alignment   gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   175   8e-44
Alignment   gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   175   8e-44
Alignment   gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   175   8e-44
Alignment   gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]            166   5e-41
Alignment   gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]              155   5e-38
Alignment   gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ...   154   2e-37
Alignment   gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ...   154   2e-37
Alignment   gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom...   149   4e-36

>ref|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo sapiens]
          Length = 405

 Score =  552 bits (1423), Expect = e-157
 Identities = 271/362 (74%), Positives = 290/362 (80%)
 Frame = +3

Query: 135  MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
            ME WPWPSGGAW                                DWLCQR          
Sbjct: 1    MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCQRLLPPPAALAV 60

Query: 315  XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
                GWIALSRLARPQRLPVATRAVLITGCDSGFGK TAKKLD+MGFTVLATVLEL+SPG
Sbjct: 61   LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPG 120

Query: 495  AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
            A ELR CCSPRL+LLQMDLTKP DISRVLEFTK HT STGLWGLVNNAGHN +VADAELS
Sbjct: 121  AIELRTCCSPRLRLLQMDLTKPGDISRVLEFTKAHTTSTGLWGLVNNAGHNEVVADAELS 180

Query: 675  PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
            PVAT+RSCMEVNFFG LE+TK LLPLLR S GRIVTV SPAGDMP+PCL AYGTSKAAVA
Sbjct: 181  PVATFRSCMEVNFFGALELTKGLLPLLRSSRGRIVTVGSPAGDMPYPCLGAYGTSKAAVA 240

Query: 855  LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034
            LLMD+FSCEL PWGVKVS+IQP CF+TE+V+NV QWE+RK+ LLA LPQELLQAYG+DYI
Sbjct: 241  LLMDTFSCELLPWGVKVSIIQPGCFKTESVRNVGQWEKRKQLLLANLPQELLQAYGKDYI 300

Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214
            EHL+GQFLHSL   + DL+PVVDAITDALLAA PR RYYPG GLGLMYFIHYYLP+GLRR
Sbjct: 301  EHLHGQFLHSLRLAMSDLTPVVDAITDALLAARPRRRYYPGQGLGLMYFIHYYLPEGLRR 360

Query: 1215 RF 1220
            RF
Sbjct: 361  RF 362


>ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens]
          Length = 387

 Score =  236 bits (601), Expect = 4e-62
 Identities = 129/287 (44%), Positives = 166/287 (57%)
 Frame = +3

Query: 348  LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527
            L+  + LPV  +AVL+TG D G G A  K LD +GFTV A VL  + PGA+ELR  CSPR
Sbjct: 72   LSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSPR 131

Query: 528  LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707
            L +LQMD+TKP  I              GLW ++NNAG      D EL  +  Y+ CM V
Sbjct: 132  LSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGELLLMTDYKQCMAV 191

Query: 708  NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887
            NFFGT+E+TK  LPLLR+S GR+V VSS  G  P   L++YG+SKAAV +       EL 
Sbjct: 192  NFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELS 251

Query: 888  PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSL 1067
             WG+KV+ IQP  F T      D+WE+ ++ +L  LP E+ + YG+DYI       L   
Sbjct: 252  KWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYILAQRNFLLLIN 311

Query: 1068 SQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            S    D SPV+  I  A+LA +P   Y PG G  L   + +YLP G+
Sbjct: 312  SLASKDFSPVLRDIQHAILAKSPFAYYTPGKGAYLWICLAHYLPIGI 358


>ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  175 bits (443), Expect = 8e-44
 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%)
 Frame = +3

Query: 369  PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
            PV ++AVL+TGCDSGFG + AK L + GF V A  L  D    G +EL +  S RL+ +Q
Sbjct: 52   PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111

Query: 543  MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
            +++    ++ +V+E  +  +     G+WGLVNNAG +    + E + + TY+   EVN +
Sbjct: 112  LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170

Query: 717  GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
            GT+ MTK+ LPL+RR+ GR+V +SS  G M  P  S Y  +K  V    D    E+ P G
Sbjct: 171  GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230

Query: 897  VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073
            VKVSV++P  F    ++ + +  +   +++   LP+ + + YG+ Y +    +     S 
Sbjct: 231  VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290

Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154
            G  D SPV+DA+T AL A  P  RY+P
Sbjct: 291  GSTDTSPVIDAVTHALTATTPYTRYHP 317


>ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  175 bits (443), Expect = 8e-44
 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%)
 Frame = +3

Query: 369  PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
            PV ++AVL+TGCDSGFG + AK L + GF V A  L  D    G +EL +  S RL+ +Q
Sbjct: 52   PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111

Query: 543  MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
            +++    ++ +V+E  +  +     G+WGLVNNAG +    + E + + TY+   EVN +
Sbjct: 112  LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170

Query: 717  GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
            GT+ MTK+ LPL+RR+ GR+V +SS  G M  P  S Y  +K  V    D    E+ P G
Sbjct: 171  GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230

Query: 897  VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073
            VKVSV++P  F    ++ + +  +   +++   LP+ + + YG+ Y +    +     S 
Sbjct: 231  VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290

Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154
            G  D SPV+DA+T AL A  P  RY+P
Sbjct: 291  GSTDTSPVIDAVTHALTATTPYTRYHP 317


>ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  175 bits (443), Expect = 8e-44
 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%)
 Frame = +3

Query: 369  PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
            PV ++AVL+TGCDSGFG + AK L + GF V A  L  D    G +EL +  S RL+ +Q
Sbjct: 52   PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111

Query: 543  MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
            +++    ++ +V+E  +  +     G+WGLVNNAG +    + E + + TY+   EVN +
Sbjct: 112  LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170

Query: 717  GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
            GT+ MTK+ LPL+RR+ GR+V +SS  G M  P  S Y  +K  V    D    E+ P G
Sbjct: 171  GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230

Query: 897  VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073
            VKVSV++P  F    ++ + +  +   +++   LP+ + + YG+ Y +    +     S 
Sbjct: 231  VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290

Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154
            G  D SPV+DA+T AL A  P  RY+P
Sbjct: 291  GSTDTSPVIDAVTHALTATTPYTRYHP 317


>ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]
          Length = 317

 Score =  166 bits (419), Expect = 5e-41
 Identities = 101/274 (36%), Positives = 145/274 (52%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LDA G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKMES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I+   ++ K H    GLWGLVNNAG    +   E        + ++VN  G +++T ++L
Sbjct: 90   IAAATQWVKEHVGDRGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVNLIGVIQVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+RR+ GRIV VSS  G + F  +  Y  SK  V    D    E+Q +GVK+S+++P  
Sbjct: 150  PLVRRARGRIVNVSSILGRVAF-FVGGYCVSKYGVEAFSDILRREIQHFGVKISIVEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            FRT  + N+ Q  ER +Q     P+ + + YG+ Y + L       L     +L+ V D 
Sbjct: 209  FRT-GMTNMTQSLERMKQSWKEAPKHIKETYGQQYFDALYNIMKEGLLNCSTNLNLVTDC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  AL + +PR RY  G      +    YLP  L
Sbjct: 268  MEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTSL 301


>ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]
          Length = 317

 Score =  155 bits (393), Expect = 5e-38
 Identities = 100/275 (36%), Positives = 148/275 (53%), Gaps = 4/275 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFGK  A++LDA G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGKLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            ++   ++ K      GLWGLVNNAG ++  A  EL       + ++VN  G +++T  LL
Sbjct: 90   VAAAAQWVKECVRDKGLWGLVNNAGISLPTAPNELLTKQDLLTILDVNLLGVIDVTLNLL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
            PL+RR+ GR+V V S  G +       C+S YG     V    DS   EL  +GVKV++I
Sbjct: 150  PLVRRARGRVVNVFSVMGRVSLFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAMI 204

Query: 915  QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094
            +P  F+T AV + +++ +   ++      E+ +AYGE ++            +   DLS 
Sbjct: 205  EPGYFKT-AVTSKERFLKSFLEIWDRSSPEVKEAYGEKFVADYKKSAEQMEQKCTQDLSL 263

Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            V + +  AL+A +PR RY  G    L+Y    Y+P
Sbjct: 264  VTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYMP 298


>ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  154 bits (388), Expect = 2e-37
 Identities = 94/280 (33%), Positives = 147/280 (52%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            +  + + ITGCDSGFG   A+  D  GF V+A  L     G+  L+A  S RL+ + +D+
Sbjct: 27   ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T P ++ R  ++ K      GLWGL+NNAG   ++A  +   +  YR  +EVN FG + +
Sbjct: 85   TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  +LPL++++ GR++ VSS  G +       Y  SK AV    DS   +++ +GV VS 
Sbjct: 145  TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  F+T     V +  E+K  +   L  ++ Q YGE YIE    +   + S    DLS
Sbjct: 204  IEPGLFKTNLADPV-KVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262

Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211
            PVV+ +  AL +  P+  Y  G    + +    ++P  L+
Sbjct: 263  PVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQ 302


>ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  154 bits (388), Expect = 2e-37
 Identities = 94/280 (33%), Positives = 147/280 (52%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            +  + + ITGCDSGFG   A+  D  GF V+A  L     G+  L+A  S RL+ + +D+
Sbjct: 27   ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T P ++ R  ++ K      GLWGL+NNAG   ++A  +   +  YR  +EVN FG + +
Sbjct: 85   TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  +LPL++++ GR++ VSS  G +       Y  SK AV    DS   +++ +GV VS 
Sbjct: 145  TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  F+T     V +  E+K  +   L  ++ Q YGE YIE    +   + S    DLS
Sbjct: 204  IEPGLFKTNLADPV-KVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262

Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211
            PVV+ +  AL +  P+  Y  G    + +    ++P  L+
Sbjct: 263  PVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQ 302


>ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens]
          Length = 318

 Score =  149 bits (377), Expect = 4e-36
 Identities = 96/296 (32%), Positives = 152/296 (51%), Gaps = 3/296 (1%)
 Frame = +3

Query: 330  WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
            W  L  L   Q LP +   V ITGCDSGFG+  A +LD  GF VLA+   L   GA++L+
Sbjct: 12   WAVLWLLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASC--LTPSGAEDLQ 69

Query: 510  ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
               S RL    +D+T P  + +  ++ ++H    GL+GLVNNAG   ++          +
Sbjct: 70   RVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDF 129

Query: 690  RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
            +  + VN  G + +T ALLPLL+++ GR++ ++S  G +       Y  SK  +    DS
Sbjct: 130  QRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDS 188

Query: 870  FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---H 1040
               ++  +G++VS+++P  FRT  V N++  E+  +   A LP      YG  ++     
Sbjct: 189  LRRDVAHFGIRVSIVEPGFFRT-PVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLK 247

Query: 1041 LNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +  + ++ +    PDL+ V   +  AL A +PR RY PG    L++    YLP  L
Sbjct: 248  MQQRIMNLICD--PDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASL 301


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,345,913
Number of Sequences: 39411
Number of extensions: 1395053
Number of successful extensions: 6964
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6888
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 4130090090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-001908
         (1221 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de...   481   e-136
Alignment   gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ...   216   4e-56
Alignment   gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro...   174   2e-43
Alignment   gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen...   159   4e-39
Alignment   gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras...   156   3e-38
Alignment   gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent...   155   1e-37
Alignment   gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent...   154   2e-37
Alignment   gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras...   152   5e-37
Alignment   gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de...   146   4e-35
Alignment   gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr...   145   6e-35

>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2
            (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
            (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
            dehydrogenase) [Canis familiaris]
          Length = 323

 Score =  481 bits (1239), Expect = e-136
 Identities = 233/273 (85%), Positives = 251/273 (91%)
 Frame = +3

Query: 402  CDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVL 581
            CDSGFGK TAKKLDAMGFTVLATVLELD PGA ELRACCSPRL+LLQMDLTKPADISR L
Sbjct: 8    CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67

Query: 582  EFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRR 761
            EFTK HT+STGLWGLVNNAGHN +VAD ELSPVAT+RSCMEVNFFG LE+TK LLPLLRR
Sbjct: 68   EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127

Query: 762  SSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRTEA 941
            S GRIVTV SPAGDMP+PCL+AYGTSKAA+ALLMD+FSCEL PWGVKVSVIQP CF+TE+
Sbjct: 128  SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187

Query: 942  VKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDAITDAL 1121
            V+NV  WE+RK+ LLA+LP+ELLQAYGEDYIEHL+GQFLHSL   LPDLSPVVDAITDAL
Sbjct: 188  VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDAL 247

Query: 1122 LAANPRHRYYPGHGLGLMYFIHYYLPKGLRRRF 1220
            LAA PR RYYPG GLGLMYFIHYYLP+GLRRRF
Sbjct: 248  LAAQPRRRYYPGRGLGLMYFIHYYLPEGLRRRF 280


>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis
            familiaris]
          Length = 382

 Score =  216 bits (550), Expect = 4e-56
 Identities = 123/287 (42%), Positives = 162/287 (56%)
 Frame = +3

Query: 348  LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527
            L+  + LPV  +AVLITG DSGFG A +K LD +GFTV   VL+    GA+ELR  CS R
Sbjct: 73   LSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKR 132

Query: 528  LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707
            L +LQMD+T    I              GLW +VNNAG   L AD EL P+  Y+ CM V
Sbjct: 133  LSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMAV 192

Query: 708  NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887
            NFFG +E+TKA LPLLR+S GR+V +SS A  +P   L+AY +SKAA+ +       EL 
Sbjct: 193  NFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELS 252

Query: 888  PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSL 1067
             WGVKVSVIQP  FRT      + W + ++ +L  L  ++ + YG+DYI           
Sbjct: 253  KWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSIN 312

Query: 1068 SQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
             +   D+SPV+  I  A+ A +P   Y PG     + F   + P G+
Sbjct: 313  IKTNTDISPVLQDIRHAVSAKSPFAFYAPGALAYCLLFFVSFSPTGI 359


>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
            [Canis familiaris]
          Length = 299

 Score =  174 bits (441), Expect = 2e-43
 Identities = 102/266 (38%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQM 545
            V ++AVL+TGCDSGFG + AK L + GF V A  L  D    G +EL    S RL+ +Q+
Sbjct: 9    VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRTIQL 68

Query: 546  DLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFG 719
            ++ K  ++ RV+E  +  +     G+WGLVNNAG +    + E + + TY+   EVN +G
Sbjct: 69   NVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWG 127

Query: 720  TLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGV 899
            T++MTKA LPL+RR+ GRIV +SS  G M  P  S Y  +K  V    D    E+ P GV
Sbjct: 128  TVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 187

Query: 900  KVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQG 1076
            KVSV++P  F    ++ N ++ +    ++   LP+ + + YG  Y +    +     + G
Sbjct: 188  KVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQAYCNSG 247

Query: 1077 LPDLSPVVDAITDALLAANPRHRYYP 1154
              D+SPVV A+T AL + +P  RY+P
Sbjct: 248  STDISPVVSAVTHALTSRSPYTRYHP 273


>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
            [Canis familiaris]
          Length = 339

 Score =  159 bits (403), Expect = 4e-39
 Identities = 104/294 (35%), Positives = 149/294 (50%), Gaps = 1/294 (0%)
 Frame = +3

Query: 330  WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
            W  L  L   Q LP +   V ITGCDSGFG+  A +LD  GF VLA+   L   GA++L+
Sbjct: 33   WAVLWWLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQRGFRVLASC--LTPAGAEDLQ 90

Query: 510  ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
               S RL    +D+T+P  + R  ++ + H    GL+GLVNNAG   ++          +
Sbjct: 91   RVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWLTQDDF 150

Query: 690  RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
               + VN  G + +T ALLPLL++S GR+V +SS  G +       Y  SK  +    DS
Sbjct: 151  HRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANG-GGYCVSKFGLEAFSDS 209

Query: 870  FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNG 1049
               ++  +GV+VS+++P  FRT  V N++  E   ++  A LP      YGE ++     
Sbjct: 210  LRRDVAHFGVRVSIVEPGFFRT-PVTNLEHLENTLQECWARLPPSTQAHYGEAFLPKYLQ 268

Query: 1050 QFLHSLSQGL-PDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
               H +S    PDL+ V   +  AL A  PR RY PG    L++    YLP  L
Sbjct: 269  VQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYLPASL 322


>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
            familiaris]
          Length = 317

 Score =  156 bits (395), Expect = 3e-38
 Identities = 106/279 (37%), Positives = 149/279 (53%), Gaps = 5/279 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GAQ+LR+  S RL  + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ +      GLWGLVNNAG       +E   +  Y    +VN  G +E+T ++L
Sbjct: 90   ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PLLRR+ GRIV VSS  G + F    AY +SK  V    D+   EL+ +GVK+S+++P  
Sbjct: 150  PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE-HLNGQFLHSLSQGL----PDLS 1091
            FRT  + +V    ER +Q    +P  + +AYG+ + + H NG     + QGL     +L+
Sbjct: 209  FRT-GMTHVAWCLERLKQAWEEVPTHIKEAYGQKFFDAHHNG-----VKQGLLKCSTNLN 262

Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
             V D +  AL + +PR RY  G      +    YLP  L
Sbjct: 263  LVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTSL 301


>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 1 [Canis familiaris]
          Length = 317

 Score =  155 bits (391), Expect = 1e-37
 Identities = 102/271 (37%), Positives = 141/271 (52%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GAQ+LR+  S RL  + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ + H    GLWGLVNNAG +   A  E      +   ++VN  G +E+T +LL
Sbjct: 90   ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
             L+R++ GR+V VSS  G +   C   Y  SK  V    DS   EL  +GVKV+VI+P  
Sbjct: 150  SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F T  V N ++     ++    L  E+ +AYGE+++           S    +L  V + 
Sbjct: 209  FSTN-VTNPEKISRGFQETWDRLSPEVREAYGEEFLASARKPIEKLKSMCDTNLYLVTNC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            +  AL A +PR RY PG    L+Y    YLP
Sbjct: 268  MEHALTACHPRTRYSPGWDAKLLYLPMSYLP 298


>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
            4 isoform 2 [Canis familiaris]
          Length = 319

 Score =  154 bits (388), Expect = 2e-37
 Identities = 103/273 (37%), Positives = 143/273 (52%), Gaps = 2/273 (0%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GAQ+LR+  S RL  + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ + H    GLWGLVNNAG +   A  E      +   ++VN  G +E+T +LL
Sbjct: 90   ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
             L+R++ GR+V VSS  G +   C   Y  SK  V    DS   EL  +GVKV+VI+P  
Sbjct: 150  SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPD--LSPVV 1100
            F T  V N ++     ++    L  E+ +AYGE++        +  L + + D  L  V 
Sbjct: 209  FSTN-VTNPEKISRGFQETWDRLSPEVREAYGEEHARTPGKLAVKELLKSMCDTNLYLVT 267

Query: 1101 DAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            + +  AL A +PR RY PG    L+Y    YLP
Sbjct: 268  NCMEHALTACHPRTRYSPGWDAKLLYLPMSYLP 300


>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
            familiaris]
          Length = 323

 Score =  152 bits (385), Expect = 5e-37
 Identities = 105/282 (37%), Positives = 149/282 (52%), Gaps = 8/282 (2%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GAQ+LR+  S RL  + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ +      GLWGLVNNAG       +E   +  Y    +VN  G +E+T ++L
Sbjct: 90   ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PLLRR+ GRIV VSS  G + F    AY +SK  V    D+   EL+ +GVK+S+++P  
Sbjct: 150  PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHS----LSQGL----P 1082
            FRT  + +V    ER +Q    +P  + +AYG+ +       FL++    + QGL     
Sbjct: 209  FRT-GMTHVAWCLERLKQAWEEVPTHIKEAYGQKFFASF--LFLYTDHNGVKQGLLKCST 265

Query: 1083 DLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208
            +L+ V D +  AL + +PR RY  G      +    YLP  L
Sbjct: 266  NLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTSL 307


>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
            [Canis familiaris]
          Length = 753

 Score =  146 bits (369), Expect = 4e-35
 Identities = 95/280 (33%), Positives = 145/280 (51%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            +  + + ITGCD+GFG   A+  D  GF V+A  L      A  L+A  S RL  + +D+
Sbjct: 461  ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTA--LKAETSERLHTVLLDV 518

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T P ++ R  ++ K      GLWGL+NNAG   ++A  +   V  YR  +EVN FG + +
Sbjct: 519  TDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISV 578

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  LLPL++++ GRI+ VSS  G +       Y  SK AV    DS   +++ +GV VS 
Sbjct: 579  TLNLLPLVKKARGRIINVSSIGGRLAISG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 637

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  F+T  + +  +  E+K  +   L  ++ Q YGE YIE    +   + S    DLS
Sbjct: 638  IEPGLFKT-GLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTSFVNVDLS 696

Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211
             VV+ +  AL +  P+ RY  G      +    ++P  L+
Sbjct: 697  LVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHMPAVLQ 736


>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
            [Canis familiaris]
          Length = 313

 Score =  145 bits (367), Expect = 6e-35
 Identities = 91/276 (32%), Positives = 141/276 (51%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            ++ + V ITGCDSGFG   A++L   G  VLA     +  GAQ+L+   S RL+   +D+
Sbjct: 23   LSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEE--GAQKLQRDTSYRLQTTLLDV 80

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T+   I    ++ +      GLW LVNNAG  +     E      +   + VN  G +E+
Sbjct: 81   TRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIEV 140

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  +LP+++++ GR+V +SS  G +       Y  SK  V    DS   EL  +GVKVS+
Sbjct: 141  TLHMLPMVKKARGRVVNMSSSGGRVAL-IGGGYCVSKFGVEAFSDSIRRELHYFGVKVSI 199

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  +RT  +   D    R R+L   LPQE   +YGE+Y  +   +  + +    P + 
Sbjct: 200  IEPGNYRTSILGKEDM-VSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQSAEPRIR 258

Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
             V +++  A+++ +PR RY PG    L+Y     LP
Sbjct: 259  EVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKLP 294


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,195,141
Number of Sequences: 33732
Number of extensions: 1352138
Number of successful extensions: 5549
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5450
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4733136205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-001908
         (1221 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032315.1| hydroxysteroid 11-beta dehydrogenase 2 [Mus mus...   509   e-144
Alignment   gi|NP_032316.1| hydroxysteroid (17-beta) dehydrogenase 2 [Mus m...   232   7e-61
Alignment   gi|NP_780386.2| 3-hydroxybutyrate dehydrogenase (heart, mitocho...   162   9e-40
Alignment   gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]               158   1e-38
Alignment   gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ...   156   5e-38
Alignment   gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]               152   7e-37
Alignment   gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu...   152   9e-37
Alignment   gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]   150   3e-36
Alignment   gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]               150   3e-36
Alignment   gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]              149   6e-36

>ref|NP_032315.1| hydroxysteroid 11-beta dehydrogenase 2 [Mus musculus]
          Length = 396

 Score =  509 bits (1311), Expect = e-144
 Identities = 253/362 (69%), Positives = 277/362 (76%)
 Frame = +3

Query: 135  MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
            ME WPWPSGGAW                                DWLC R          
Sbjct: 1    MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCLRLMPPPAALVV 60

Query: 315  XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
                GWIALSRLARP RLPVATRAVLITGCD+GFGK TAKKLDAMGFTVLATVL+L+SPG
Sbjct: 61   LAGAGWIALSRLARPPRLPVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNSPG 120

Query: 495  AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
            A ELR  CSPRLKLLQMDLTK  DISRVLE TK HTASTGLWGLVNNAG NI+VAD  LS
Sbjct: 121  ALELRDLCSPRLKLLQMDLTKAEDISRVLEITKAHTASTGLWGLVNNAGLNIVVADVGLS 180

Query: 675  PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
            PVAT+R CMEVNFFG LE+TK LLPLLR S GRIV V SPAGDMP+PCL+AYGTSKAA+A
Sbjct: 181  PVATFRKCMEVNFFGALELTKGLLPLLRHSRGRIVPVGSPAGDMPYPCLAAYGTSKAAIA 240

Query: 855  LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034
            LLMD+F CEL PWG+KVS+I+P C +T AV NV+ WE+RK+ LLA +P+ELLQAYG DYI
Sbjct: 241  LLMDTFGCELLPWGIKVSIIKPGCSKTAAVTNVNLWEKRKQLLLANIPRELLQAYGADYI 300

Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214
            EH++GQFL+SL   LPDLSPVVDAI DALLAA PR RYYPG GLGLMYFIH+YLP+GLRR
Sbjct: 301  EHVHGQFLNSLRMALPDLSPVVDAIIDALLAAQPRSRYYPGRGLGLMYFIHHYLPEGLRR 360

Query: 1215 RF 1220
             F
Sbjct: 361  CF 362


>ref|NP_032316.1| hydroxysteroid (17-beta) dehydrogenase 2 [Mus musculus]
          Length = 358

 Score =  232 bits (591), Expect = 7e-61
 Identities = 125/279 (44%), Positives = 167/279 (59%), Gaps = 1/279 (0%)
 Frame = +3

Query: 366  LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 545
            LPV  +AVL+TG DSGFG   AK LD +GFTV A VL+ + PGA+ELR  CS RL +LQM
Sbjct: 79   LPVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSERLSVLQM 138

Query: 546  DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
            D+TKP  I              GLW +VNNAG   L  D EL P++ YR CM VNFFGT+
Sbjct: 139  DVTKPEQIKDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFFGTV 198

Query: 726  EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 905
            E+TKA LPLLR+S GR+V VSS  G +P    SAY  +KAA+ +       EL  WGVKV
Sbjct: 199  EVTKAFLPLLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKV 258

Query: 906  SVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ-GLP 1082
              I+P  F+T    + D W++ ++++L    +++ + YG+DY+ H     + +L +   P
Sbjct: 259  VTIKPGGFKTNITGSQDIWDKMEKEILDHFSKDIQENYGQDYV-HTQKLIIPTLKERSNP 317

Query: 1083 DLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            D++PV+  I  A+ A NP   YYPG    L   +  Y P
Sbjct: 318  DITPVLRDIQHAISARNPSSFYYPGRMAYLWVCLAAYCP 356


>ref|NP_780386.2| 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) [Mus musculus]
          Length = 343

 Score =  162 bits (409), Expect = 9e-40
 Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 5/263 (1%)
 Frame = +3

Query: 381  RAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQMDLT 554
            +A+LITGCDSGFG + AK L + GF V A  L  D    G +EL +  S RL+ +Q+++ 
Sbjct: 56   KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115

Query: 555  KPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLE 728
               ++ + +E  +  +     G+WGLVNNAG +    + E + + TY+   EVN +GT+ 
Sbjct: 116  NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWGTVR 174

Query: 729  MTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVS 908
             TK+ LPLLRR+ GR+V +SS  G M  P  S Y  +K  V    D    E+ P GVKVS
Sbjct: 175  TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVS 234

Query: 909  VIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPD 1085
            V++P  F    ++ + ++ +   +++   LP+ + + YG  Y +    +     + G  D
Sbjct: 235  VVEPGNFIAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTD 294

Query: 1086 LSPVVDAITDALLAANPRHRYYP 1154
             S V++A+T AL AA P  RY+P
Sbjct: 295  TSSVINAVTHALTAATPYTRYHP 317


>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]
          Length = 318

 Score =  158 bits (399), Expect = 1e-38
 Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 3/293 (1%)
 Frame = +3

Query: 330  WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
            W  L  L   Q LP +   + ITGCDSGFG+  A +LD  GF VLA  L     GA++L+
Sbjct: 12   WAVLWLLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLT--PSGAEDLQ 69

Query: 510  ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
               S RL    +D+T P ++ +V ++ K     TGL+GLVNNAG   ++          +
Sbjct: 70   QMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDF 129

Query: 690  RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
            +  + VN  G + +T ALLPLL+++ GR+V ++S  G +       Y  SK  +    DS
Sbjct: 130  QRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANG-GGYCVSKFGLEAFSDS 188

Query: 870  FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---H 1040
               ++ P+GV+VS+++P  FRT  V N++  E   +   A LP  +   YGE +++    
Sbjct: 189  LRRDMAPFGVQVSIVEPGFFRT-PVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLR 247

Query: 1041 LNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            +  + ++ +    P+L+ V   +  AL A +PR RY PG    L++    YLP
Sbjct: 248  VQRRIMNLICD--PELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLP 298


>ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus]
          Length = 319

 Score =  156 bits (394), Expect = 5e-38
 Identities = 95/262 (36%), Positives = 142/262 (54%)
 Frame = +3

Query: 372  VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
            +A + V ITGCD+GFG   A+  D  GF V+A  L     G+  L+A  S RL  + +D+
Sbjct: 27   IADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLT--ESGSAALKAKTSERLHTVLLDV 84

Query: 552  TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
            T P ++ +  ++ K H    GLWGL+NNAG   ++A  +   V  YR  +EVN FG + +
Sbjct: 85   TDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVNLFGLINV 144

Query: 732  TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
            T  +LPL++++ GR++ VSS  G + F     Y  SK AV    DS   +++ +GV VS 
Sbjct: 145  TLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203

Query: 912  IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091
            I+P  F+TE    + +  E+K  +   L  ++ Q YGE YIE    +   + S    DLS
Sbjct: 204  IEPGLFKTELADPI-KTTEKKLAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSVNLDLS 262

Query: 1092 PVVDAITDALLAANPRHRYYPG 1157
             VV  +  AL +  P+ RY  G
Sbjct: 263  LVVGCMDHALTSLFPKTRYIAG 284


>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]
          Length = 317

 Score =  152 bits (384), Expect = 7e-37
 Identities = 100/271 (36%), Positives = 139/271 (51%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA+ELR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ K    + GLWGLVNNAG +I     E      +   ++VN  G +E+T ++L
Sbjct: 90   IVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNLLGLIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR++ V+S  G +   C  AY  SK  V    DS   EL  +GVKV++I+P  
Sbjct: 150  PLVRKARGRVINVASVLGRVSL-CGGAYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 208

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            F T  V +  +     + L      E+ + YGE Y+     +      +   DLS V D 
Sbjct: 209  FLT-GVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCNKDLSLVTDC 267

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            +  AL A +PR RY  G    L Y    YLP
Sbjct: 268  MEHALTACHPRTRYSAGWDAKLFYLPLSYLP 298


>ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus]
          Length = 318

 Score =  152 bits (383), Expect = 9e-37
 Identities = 100/275 (36%), Positives = 142/275 (51%), Gaps = 4/275 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA+ELR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ K    + GLWGLVNNAG ++ +  ++      + S ++VN  G +E+T  +L
Sbjct: 90   IVAATQWVKERVGNRGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVNLLGMIEVTLTML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V VSS  G +       Y  SK  V    DS   EL  +GVKV++I+P  
Sbjct: 150  PLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 209

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ----GLPDLSP 1094
            F T    +  +     + L      E+ + YGE Y+      +L SL++       DLS 
Sbjct: 210  FLTGMASSA-RLSSNTQMLWDQTSSEIREIYGEKYLAF----YLKSLNELDKRCNKDLSL 264

Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            V D +  AL A +PR RY  G    L +    YLP
Sbjct: 265  VTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYLP 299


>ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]
          Length = 317

 Score =  150 bits (379), Expect = 3e-36
 Identities = 99/275 (36%), Positives = 140/275 (50%), Gaps = 4/275 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA+ELR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ K    + GLWGLVNNAG +      E      +   ++VN  G +E+T ++L
Sbjct: 90   IVAATQWVKERVGNRGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLGMIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
            PL+R++ GR+V VSS  G M F     C+S YG     V    DS   EL  +GVKV++I
Sbjct: 150  PLVRKARGRVVNVSSVMGRMSFFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAII 204

Query: 915  QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094
            +P  F+T  V + D+     + +      E+ + YGE ++            +   DLS 
Sbjct: 205  EPGGFKT-CVTSSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLSV 263

Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            V D +  AL A +PR RY  G     ++    YLP
Sbjct: 264  VTDCMEHALTARHPRTRYSAGWDAKFLFLPLSYLP 298


>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]
          Length = 316

 Score =  150 bits (379), Expect = 3e-36
 Identities = 95/271 (35%), Positives = 140/271 (51%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA++LR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEQLRNKTSDRLETVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ K    + GLWGLVNNAG  +   +  L     + + ++VN  G +E+T ++L
Sbjct: 90   IVAATQWVKERVGNRGLWGLVNNAGICVFAINEWLKK-EDFANILDVNLLGMIEVTLSML 148

Query: 747  PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
            PL+R++ GR+V +SS  G +   C   Y  SK  V    DS   E+  +GVKV++I+P  
Sbjct: 149  PLVRKARGRVVNISSSMGRVSL-CGGGYCISKYGVEAFSDSLRREISYFGVKVAIIEPGG 207

Query: 927  FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106
            FRT  V N ++      +L      E+ + Y +++++               DLS V D 
Sbjct: 208  FRTN-VSNYERLSHSIEKLWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLSVVTDC 266

Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            +  AL A +PR RY  G    L Y    Y+P
Sbjct: 267  MEHALTACHPRTRYSAGWDAKLFYLPLSYMP 297


>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]
          Length = 317

 Score =  149 bits (376), Expect = 6e-36
 Identities = 101/275 (36%), Positives = 139/275 (50%), Gaps = 4/275 (1%)
 Frame = +3

Query: 387  VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
            V ITGCDSGFG   A++LD  G  VLA  L     GA+ELR   S RL+ + +D+TK   
Sbjct: 32   VFITGCDSGFGTLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89

Query: 567  ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
            I    ++ K H  + GLWGLVNNAG +      E      +   ++VN  G +E+T ++L
Sbjct: 90   IVTATQWVKEHVGNRGLWGLVNNAGISTPSGPNEWMKKQDFAHVLDVNLLGMIEVTLSML 149

Query: 747  PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
            PL+R++ GR+V VSS  G +       C+S YG     V    DS   EL  +GVKV++I
Sbjct: 150  PLVRKARGRVVNVSSVMGRVSLFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAII 204

Query: 915  QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094
            +P  F T  V +  +     + L      E+ + YGE Y+     +      +   DLS 
Sbjct: 205  EPGFFLT-GVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNKLDKRCNKDLSG 263

Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199
            V D +  AL A +PR RY  G    L Y    YLP
Sbjct: 264  VTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLP 298


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,563,587
Number of Sequences: 45328
Number of extensions: 1549435
Number of successful extensions: 6676
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6580
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5089235100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)