BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001908 (1221 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 629 0.0 Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 62 4e-11 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 60 1e-10 Alignment gi|NP_998992.1| carbonyl reductase [Sus scrofa] 49 2e-07 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 629 bits (1623), Expect = 0.0 Identities = 314/362 (86%), Positives = 315/362 (87%) Frame = +3 Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314 MESWPWPSGGAW DWLCQR Sbjct: 1 MESWPWPSGGAWLLVAARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALVV 60 Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494 GWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG Sbjct: 61 LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 120 Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS Sbjct: 121 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 180 Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA Sbjct: 181 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 240 Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI Sbjct: 241 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 300 Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAA PRHRYYPGHGLGLMYFIHYYLP+GLRR Sbjct: 301 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAAKPRHRYYPGHGLGLMYFIHYYLPEGLRR 360 Query: 1215 RF 1220 RF Sbjct: 361 RF 362 >ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa] Length = 292 Score = 61.6 bits (148), Expect = 4e-11 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 4/190 (2%) Frame = +3 Query: 354 RPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLK 533 RP+ L + V++TG G G+ A L MG V+ T + + L+ S L+ Sbjct: 28 RPEML--RGKKVIVTGASKGIGREMAYHLARMGAHVVVT-----ARSEETLKKVVSHSLE 80 Query: 534 LLQMDLTKPADISRVLEFTKVHTASTG--LWGLVNNAGHNILVA--DAELSPVATYRSCM 701 L A + F + A G L GL ++I A + + R M Sbjct: 81 LGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITQAFMTSVYDDIHLVRRSM 140 Query: 702 EVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCE 881 EVNF + ++ A LP+L++S+G IV VSS AG M P ++ Y SK A+ S + E Sbjct: 141 EVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKE 200 Query: 882 LQPWGVKVSV 911 V VS+ Sbjct: 201 YSVTKVNVSI 210 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 59.7 bits (143), Expect = 1e-10 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 11/203 (5%) Frame = +3 Query: 360 QRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLA----------TVLELDSPGAQELR 509 +R P+ + L+T G G A A++L G V+ TV L G Sbjct: 8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTG 67 Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689 C + K D R++ G+ LV+NA N + + + Sbjct: 68 TVCH---------VGKAEDRERLVAMAV--NLHGGVDILVSNAAVNPFFGNIIDATEEVW 116 Query: 690 RSCMEVNFFGTLEMTKALLPLL-RRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMD 866 + VN T+ MTKA++P + +R G ++ VSS PFP L Y SK A+ L Sbjct: 117 DKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTK 176 Query: 867 SFSCELQPWGVKVSVIQPACFRT 935 + + EL P ++V+ + P +T Sbjct: 177 NLAVELAPRNIRVNCLAPGLIKT 199 >ref|NP_998992.1| carbonyl reductase [Sus scrofa] Length = 244 Score = 49.3 bits (116), Expect = 2e-07 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 2/200 (1%) Frame = +3 Query: 390 LITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADI 569 L+TG G G+ T K L G V+A V + + C P ++ + +DL Sbjct: 11 LVTGAGKGIGRDTVKALHVSGARVVA-VTRTNGDLVSLSQEC--PGIEPVCVDLGDWEAT 67 Query: 570 SRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLP 749 R L L LVNNA ++ + + RS VN ++++ + Sbjct: 68 ERALG----GVGPVDL--LVNNAAVALMQPFLDTTKEVFDRS-FNVNLRSVFQVSQIVAR 120 Query: 750 LL--RRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPA 923 + R G IV VSS + +P L+AY ++K A+ +L S + EL P ++V+ + P Sbjct: 121 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 180 Query: 924 CFRTEAVKNVDQWEERKRQL 983 T ++V E R+L Sbjct: 181 VVLTAMGRSVTSDPELARKL 200 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,128,451 Number of Sequences: 1040 Number of extensions: 30615 Number of successful extensions: 115 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 111 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 115254420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001908 (1221 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_777067.1| hydroxysteroid (11-beta) dehydrogenase 2 [Bos t... 570 e-163 Alignment gi|XP_593783.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 209 4e-54 Alignment gi|NP_001029772.1| 3-hydroxybutyrate dehydrogenase, type 1 [Bos... 173 2e-43 Alignment gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] 161 1e-39 Alignment gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ... 151 9e-37 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 150 2e-36 Alignment gi|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos... 148 7e-36 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 147 2e-35 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 147 2e-35 Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 147 2e-35 >ref|NP_777067.1| hydroxysteroid (11-beta) dehydrogenase 2 [Bos taurus] Length = 404 Score = 570 bits (1469), Expect = e-163 Identities = 282/362 (77%), Positives = 297/362 (82%) Frame = +3 Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314 MESWPWPSGGAW DWLCQR Sbjct: 1 MESWPWPSGGAWLLVPARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALAV 60 Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494 GWI LSRLARPQRLPVATRAVLITGCDSGFG ATAKKLD MGFTVLATVL+L+SPG Sbjct: 61 LAATGWIVLSRLARPQRLPVATRAVLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPG 120 Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674 A ELRACCS RLKLLQMDLTKP DISRVLEFTKVHT STGLWGLVNNAG NI VADAEL Sbjct: 121 ALELRACCSSRLKLLQMDLTKPGDISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELC 180 Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854 PVAT+R+CMEVNFFG LEMTK LLPLLRRSSGRIVTVSSPAGDMPFPCL+AYGTSKAA+A Sbjct: 181 PVATFRTCMEVNFFGALEMTKGLLPLLRRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALA 240 Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034 LLM +FSCEL PWGVKVS+IQPACF+TE+VK+V QWEERK+QLLATLPQELLQAYGEDYI Sbjct: 241 LLMGNFSCELLPWGVKVSIIQPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYI 300 Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214 EHLNGQFLHSLSQ LPDLSPVVDAITDALLAA P RYYPGHGLGL+YFIHYYLP+GLR+ Sbjct: 301 EHLNGQFLHSLSQALPDLSPVVDAITDALLAAQPLRRYYPGHGLGLIYFIHYYLPEGLRQ 360 Query: 1215 RF 1220 RF Sbjct: 361 RF 362 >ref|XP_593783.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2, partial [Bos taurus] Length = 308 Score = 209 bits (532), Expect = 4e-54 Identities = 113/256 (44%), Positives = 152/256 (59%), Gaps = 1/256 (0%) Frame = +3 Query: 393 ITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADIS 572 + GCDSGFG AK LD +GFTV A VL+ GA+ELR CS L +LQ+++T +I Sbjct: 8 LAGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQLNITNTQEIK 67 Query: 573 RVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPL 752 K + GLW ++NNAG L D EL P+ Y+ CM VNFFG +E+TK LPL Sbjct: 68 AAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAVEVTKVFLPL 127 Query: 753 LRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFR 932 LR+S GR+V +SS AG +P ++AYG+SKAA+ + EL WGVKVSVIQP F+ Sbjct: 128 LRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQPGGFK 187 Query: 933 TEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGL-PDLSPVVDAI 1109 T WE+ +R +L L E+ + YG+DYI FL+ + PD+SPV+ + Sbjct: 188 TNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILS-ERSFLNLMKTSTDPDISPVLLDV 246 Query: 1110 TDALLAANPRHRYYPG 1157 A+ A +P Y PG Sbjct: 247 RHAISAQSPFAFYAPG 262 >ref|NP_001029772.1| 3-hydroxybutyrate dehydrogenase, type 1 [Bos taurus] Length = 344 Score = 173 bits (439), Expect = 2e-43 Identities = 108/277 (38%), Positives = 149/277 (53%), Gaps = 15/277 (5%) Frame = +3 Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELD--SPGAQELRACCSPRLKLLQ 542 PV ++AVLITGCDSGFG + AK L + GF V A L D S G +EL + S RL+ +Q Sbjct: 52 PVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRTVQ 111 Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716 +++ K ++ + E + + GLWGLVNNAG + D E + + TY+ EVN + Sbjct: 112 LNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 170 Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896 GT+ +TKA LPL+RR+ GR+V +SS G M S Y +K V D E+ P G Sbjct: 171 GTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHPLG 230 Query: 897 VKVSVIQPACF-----------RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHL 1043 VKVSV++P F R +A+ N WEE LP+ + Q YG Y + Sbjct: 231 VKVSVVEPGNFIAATSLYGGTERIQAIAN-KMWEE--------LPEVVRQDYGRKYFDEK 281 Query: 1044 NGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYP 1154 + + G D SPV+ A+T AL A P RY+P Sbjct: 282 VARMESYCTSGSTDTSPVIKAVTHALTATTPYTRYHP 318 >ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] Length = 317 Score = 161 bits (407), Expect = 1e-39 Identities = 102/274 (37%), Positives = 145/274 (52%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNQLARQLDLRGLRVLAGCLT--EQGAEQLRNQTSDRLQTVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I+ E+ K GLWGLVNNAG AE + TYR + VN G +E+T ++L Sbjct: 90 IAAATEWVKECVGDRGLWGLVNNAGIFHSHGYAEWIKIETYRDTLRVNLIGVIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GRIV VSS G + F + Y SK V D ELQ +GVKVS+++P Sbjct: 150 PLVRKAQGRIVNVSSILGRIAF-FGAVYSCSKYGVEAFSDILRRELQHFGVKVSMVEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 FRT A+ + ++ E +Q+ P + + YG+ + + + L +L+ V D Sbjct: 209 FRT-AMTDWQKFSEIMKQIWKETPAHIKETYGQKFFDAYHDLMKQGLLSCSTNLNLVTDC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL + +PR RY G + YLP L Sbjct: 268 MEHALTSVHPRTRYSAGWDAQFFFVPLSYLPTSL 301 >ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus] Length = 319 Score = 151 bits (382), Expect = 9e-37 Identities = 93/262 (35%), Positives = 142/262 (54%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 + + + ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+ Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLHTVLLDV 84 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + + Sbjct: 85 TDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVEVNLFGLISV 144 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T +LPL++++ GRI+ VSS G + F Y SK AV DS +++ +GV V+ Sbjct: 145 TLNMLPLVKKARGRIINVSSIGGRLAFGG-GGYSPSKYAVEGFNDSLRRDMKAFGVHVAC 203 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P F+T + + ++ E+K + L ++ Q YGE YIE Q + S DLS Sbjct: 204 IEPGLFKTN-LSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTASFVNVDLS 262 Query: 1092 PVVDAITDALLAANPRHRYYPG 1157 VV+ + AL + P+ RY G Sbjct: 263 LVVECMDHALTSLFPKTRYAAG 284 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 150 bits (379), Expect = 2e-36 Identities = 100/274 (36%), Positives = 143/274 (52%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 ++ E+ K GLWGLVNNAG + A E + ++VN G +++T ++L Sbjct: 90 VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V VSS G + Y SK V DS EL +GVKV +I+P Sbjct: 150 PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F+T AV + + + E+ + YGE++ + Q + + S L DLS V + Sbjct: 209 FKT-AVTSPKALSQGFQASWNQASPEIKELYGENHGKLALEQLIFTSSDLLFDLSLVTNC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL A +PR RY PG +Y YLP L Sbjct: 268 MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301 >ref|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos taurus] Length = 319 Score = 148 bits (374), Expect = 7e-36 Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 3/277 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 + ITGCDSGFG+ A +LD GF VLA+ L GA++L+ S RL +D+T P Sbjct: 32 IFITGCDSGFGRLLALRLDQRGFRVLASCLT--PSGAEDLQRVASSRLHTTLLDVTDPQS 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I + +++ + H GL+GLVNNAG ++ ++ + VN G + +T ALL Sbjct: 90 IRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTLGPIGVTLALL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PLL ++ GR++ ++S G + Y SK + DS ++ P+GV+VS+++P Sbjct: 150 PLLLQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGF 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---HLNGQFLHSLSQGLPDLSPV 1097 FRT V N++ E+ + A LP YGE ++ + + ++ + PDL+ V Sbjct: 209 FRT-PVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMICD--PDLAKV 265 Query: 1098 VDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL A +PR RY PG L++ YLP L Sbjct: 266 SRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARL 302 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 147 bits (371), Expect = 2e-35 Identities = 98/274 (35%), Positives = 140/274 (51%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 ++ E+ K GLWGLVNNAG + A E + ++VN G +++T ++L Sbjct: 90 VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V VSS G + Y SK V DS EL +GVKV +I+P Sbjct: 150 PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F+T AV + + + E+ + YGE ++ +L + DLS V + Sbjct: 209 FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL A +PR RY PG +Y YLP L Sbjct: 268 MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 147 bits (371), Expect = 2e-35 Identities = 98/274 (35%), Positives = 140/274 (51%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 ++ E+ K GLWGLVNNAG + A E + ++VN G +++T ++L Sbjct: 90 VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V VSS G + Y SK V DS EL +GVKV +I+P Sbjct: 150 PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F+T AV + + + E+ + YGE ++ +L + DLS V + Sbjct: 209 FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL A +PR RY PG +Y YLP L Sbjct: 268 MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301 >ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Bos taurus] Length = 317 Score = 147 bits (371), Expect = 2e-35 Identities = 98/274 (35%), Positives = 140/274 (51%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 ++ E+ K GLWGLVNNAG + A E + ++VN G +++T ++L Sbjct: 90 VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V VSS G + Y SK V DS EL +GVKV +I+P Sbjct: 150 PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F+T AV + + + E+ + YGE ++ +L + DLS V + Sbjct: 209 FKT-AVTSPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL A +PR RY PG +Y YLP L Sbjct: 268 MEHALTACHPRTRYSPGWDAKFIYLPMSYLPSFL 301 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,173,928 Number of Sequences: 33508 Number of extensions: 1162527 Number of successful extensions: 4938 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4042 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4867 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 3813593788 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001908 (1221 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo ... 552 e-157 Alignment gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ... 236 4e-62 Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 175 8e-44 Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 175 8e-44 Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 175 8e-44 Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 166 5e-41 Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 155 5e-38 Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 154 2e-37 Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 154 2e-37 Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 149 4e-36 >ref|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo sapiens] Length = 405 Score = 552 bits (1423), Expect = e-157 Identities = 271/362 (74%), Positives = 290/362 (80%) Frame = +3 Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314 ME WPWPSGGAW DWLCQR Sbjct: 1 MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCQRLLPPPAALAV 60 Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494 GWIALSRLARPQRLPVATRAVLITGCDSGFGK TAKKLD+MGFTVLATVLEL+SPG Sbjct: 61 LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPG 120 Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674 A ELR CCSPRL+LLQMDLTKP DISRVLEFTK HT STGLWGLVNNAGHN +VADAELS Sbjct: 121 AIELRTCCSPRLRLLQMDLTKPGDISRVLEFTKAHTTSTGLWGLVNNAGHNEVVADAELS 180 Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854 PVAT+RSCMEVNFFG LE+TK LLPLLR S GRIVTV SPAGDMP+PCL AYGTSKAAVA Sbjct: 181 PVATFRSCMEVNFFGALELTKGLLPLLRSSRGRIVTVGSPAGDMPYPCLGAYGTSKAAVA 240 Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034 LLMD+FSCEL PWGVKVS+IQP CF+TE+V+NV QWE+RK+ LLA LPQELLQAYG+DYI Sbjct: 241 LLMDTFSCELLPWGVKVSIIQPGCFKTESVRNVGQWEKRKQLLLANLPQELLQAYGKDYI 300 Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214 EHL+GQFLHSL + DL+PVVDAITDALLAA PR RYYPG GLGLMYFIHYYLP+GLRR Sbjct: 301 EHLHGQFLHSLRLAMSDLTPVVDAITDALLAARPRRRYYPGQGLGLMYFIHYYLPEGLRR 360 Query: 1215 RF 1220 RF Sbjct: 361 RF 362 >ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens] Length = 387 Score = 236 bits (601), Expect = 4e-62 Identities = 129/287 (44%), Positives = 166/287 (57%) Frame = +3 Query: 348 LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527 L+ + LPV +AVL+TG D G G A K LD +GFTV A VL + PGA+ELR CSPR Sbjct: 72 LSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSPR 131 Query: 528 LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707 L +LQMD+TKP I GLW ++NNAG D EL + Y+ CM V Sbjct: 132 LSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGELLLMTDYKQCMAV 191 Query: 708 NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887 NFFGT+E+TK LPLLR+S GR+V VSS G P L++YG+SKAAV + EL Sbjct: 192 NFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELS 251 Query: 888 PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSL 1067 WG+KV+ IQP F T D+WE+ ++ +L LP E+ + YG+DYI L Sbjct: 252 KWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYILAQRNFLLLIN 311 Query: 1068 SQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 S D SPV+ I A+LA +P Y PG G L + +YLP G+ Sbjct: 312 SLASKDFSPVLRDIQHAILAKSPFAYYTPGKGAYLWICLAHYLPIGI 358 >ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 175 bits (443), Expect = 8e-44 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%) Frame = +3 Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542 PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111 Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716 +++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN + Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170 Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896 GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230 Query: 897 VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073 VKVSV++P F ++ + + + +++ LP+ + + YG+ Y + + S Sbjct: 231 VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290 Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154 G D SPV+DA+T AL A P RY+P Sbjct: 291 GSTDTSPVIDAVTHALTATTPYTRYHP 317 >ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 175 bits (443), Expect = 8e-44 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%) Frame = +3 Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542 PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111 Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716 +++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN + Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170 Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896 GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230 Query: 897 VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073 VKVSV++P F ++ + + + +++ LP+ + + YG+ Y + + S Sbjct: 231 VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290 Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154 G D SPV+DA+T AL A P RY+P Sbjct: 291 GSTDTSPVIDAVTHALTATTPYTRYHP 317 >ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 175 bits (443), Expect = 8e-44 Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 5/267 (1%) Frame = +3 Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542 PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111 Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716 +++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN + Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170 Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896 GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230 Query: 897 VKVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ 1073 VKVSV++P F ++ + + + +++ LP+ + + YG+ Y + + S Sbjct: 231 VKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSS 290 Query: 1074 GLPDLSPVVDAITDALLAANPRHRYYP 1154 G D SPV+DA+T AL A P RY+P Sbjct: 291 GSTDTSPVIDAVTHALTATTPYTRYHP 317 >ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] Length = 317 Score = 166 bits (419), Expect = 5e-41 Identities = 101/274 (36%), Positives = 145/274 (52%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LDA G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKMES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I+ ++ K H GLWGLVNNAG + E + ++VN G +++T ++L Sbjct: 90 IAAATQWVKEHVGDRGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVNLIGVIQVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+RR+ GRIV VSS G + F + Y SK V D E+Q +GVK+S+++P Sbjct: 150 PLVRRARGRIVNVSSILGRVAF-FVGGYCVSKYGVEAFSDILRREIQHFGVKISIVEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 FRT + N+ Q ER +Q P+ + + YG+ Y + L L +L+ V D Sbjct: 209 FRT-GMTNMTQSLERMKQSWKEAPKHIKETYGQQYFDALYNIMKEGLLNCSTNLNLVTDC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + AL + +PR RY G + YLP L Sbjct: 268 MEHALTSVHPRTRYSAGWDAKFFFIPLSYLPTSL 301 >ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] Length = 317 Score = 155 bits (393), Expect = 5e-38 Identities = 100/275 (36%), Positives = 148/275 (53%), Gaps = 4/275 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFGK A++LDA G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGKLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 ++ ++ K GLWGLVNNAG ++ A EL + ++VN G +++T LL Sbjct: 90 VAAAAQWVKECVRDKGLWGLVNNAGISLPTAPNELLTKQDLLTILDVNLLGVIDVTLNLL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914 PL+RR+ GR+V V S G + C+S YG V DS EL +GVKV++I Sbjct: 150 PLVRRARGRVVNVFSVMGRVSLFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAMI 204 Query: 915 QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094 +P F+T AV + +++ + ++ E+ +AYGE ++ + DLS Sbjct: 205 EPGYFKT-AVTSKERFLKSFLEIWDRSSPEVKEAYGEKFVADYKKSAEQMEQKCTQDLSL 263 Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 V + + AL+A +PR RY G L+Y Y+P Sbjct: 264 VTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYMP 298 >ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 154 bits (388), Expect = 2e-37 Identities = 94/280 (33%), Positives = 147/280 (52%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 + + + ITGCDSGFG A+ D GF V+A L G+ L+A S RL+ + +D+ Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T P ++ R ++ K GLWGL+NNAG ++A + + YR +EVN FG + + Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T +LPL++++ GR++ VSS G + Y SK AV DS +++ +GV VS Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P F+T V + E+K + L ++ Q YGE YIE + + S DLS Sbjct: 204 IEPGLFKTNLADPV-KVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262 Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211 PVV+ + AL + P+ Y G + + ++P L+ Sbjct: 263 PVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQ 302 >ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 154 bits (388), Expect = 2e-37 Identities = 94/280 (33%), Positives = 147/280 (52%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 + + + ITGCDSGFG A+ D GF V+A L G+ L+A S RL+ + +D+ Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T P ++ R ++ K GLWGL+NNAG ++A + + YR +EVN FG + + Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T +LPL++++ GR++ VSS G + Y SK AV DS +++ +GV VS Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P F+T V + E+K + L ++ Q YGE YIE + + S DLS Sbjct: 204 IEPGLFKTNLADPV-KVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262 Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211 PVV+ + AL + P+ Y G + + ++P L+ Sbjct: 263 PVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQ 302 >ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens] Length = 318 Score = 149 bits (377), Expect = 4e-36 Identities = 96/296 (32%), Positives = 152/296 (51%), Gaps = 3/296 (1%) Frame = +3 Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509 W L L Q LP + V ITGCDSGFG+ A +LD GF VLA+ L GA++L+ Sbjct: 12 WAVLWLLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASC--LTPSGAEDLQ 69 Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689 S RL +D+T P + + ++ ++H GL+GLVNNAG ++ + Sbjct: 70 RVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDF 129 Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869 + + VN G + +T ALLPLL+++ GR++ ++S G + Y SK + DS Sbjct: 130 QRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDS 188 Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---H 1040 ++ +G++VS+++P FRT V N++ E+ + A LP YG ++ Sbjct: 189 LRRDVAHFGIRVSIVEPGFFRT-PVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLK 247 Query: 1041 LNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + + ++ + PDL+ V + AL A +PR RY PG L++ YLP L Sbjct: 248 MQQRIMNLICD--PDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASL 301 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,345,913 Number of Sequences: 39411 Number of extensions: 1395053 Number of successful extensions: 6964 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6888 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 4130090090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001908 (1221 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 481 e-136 Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 216 4e-56 Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 174 2e-43 Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 159 4e-39 Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 156 3e-38 Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 155 1e-37 Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 154 2e-37 Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 152 5e-37 Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 146 4e-35 Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 145 6e-35 >ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris] Length = 323 Score = 481 bits (1239), Expect = e-136 Identities = 233/273 (85%), Positives = 251/273 (91%) Frame = +3 Query: 402 CDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVL 581 CDSGFGK TAKKLDAMGFTVLATVLELD PGA ELRACCSPRL+LLQMDLTKPADISR L Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67 Query: 582 EFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRR 761 EFTK HT+STGLWGLVNNAGHN +VAD ELSPVAT+RSCMEVNFFG LE+TK LLPLLRR Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127 Query: 762 SSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRTEA 941 S GRIVTV SPAGDMP+PCL+AYGTSKAA+ALLMD+FSCEL PWGVKVSVIQP CF+TE+ Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187 Query: 942 VKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDAITDAL 1121 V+NV WE+RK+ LLA+LP+ELLQAYGEDYIEHL+GQFLHSL LPDLSPVVDAITDAL Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDAL 247 Query: 1122 LAANPRHRYYPGHGLGLMYFIHYYLPKGLRRRF 1220 LAA PR RYYPG GLGLMYFIHYYLP+GLRRRF Sbjct: 248 LAAQPRRRYYPGRGLGLMYFIHYYLPEGLRRRF 280 >ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris] Length = 382 Score = 216 bits (550), Expect = 4e-56 Identities = 123/287 (42%), Positives = 162/287 (56%) Frame = +3 Query: 348 LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527 L+ + LPV +AVLITG DSGFG A +K LD +GFTV VL+ GA+ELR CS R Sbjct: 73 LSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKR 132 Query: 528 LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707 L +LQMD+T I GLW +VNNAG L AD EL P+ Y+ CM V Sbjct: 133 LSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMAV 192 Query: 708 NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887 NFFG +E+TKA LPLLR+S GR+V +SS A +P L+AY +SKAA+ + EL Sbjct: 193 NFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELS 252 Query: 888 PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSL 1067 WGVKVSVIQP FRT + W + ++ +L L ++ + YG+DYI Sbjct: 253 KWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSIN 312 Query: 1068 SQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 + D+SPV+ I A+ A +P Y PG + F + P G+ Sbjct: 313 IKTNTDISPVLQDIRHAVSAKSPFAFYAPGALAYCLLFFVSFSPTGI 359 >ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris] Length = 299 Score = 174 bits (441), Expect = 2e-43 Identities = 102/266 (38%), Positives = 152/266 (57%), Gaps = 5/266 (1%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQM 545 V ++AVL+TGCDSGFG + AK L + GF V A L D G +EL S RL+ +Q+ Sbjct: 9 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRTIQL 68 Query: 546 DLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFG 719 ++ K ++ RV+E + + G+WGLVNNAG + + E + + TY+ EVN +G Sbjct: 69 NVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWG 127 Query: 720 TLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGV 899 T++MTKA LPL+RR+ GRIV +SS G M P S Y +K V D E+ P GV Sbjct: 128 TVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 187 Query: 900 KVSVIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQG 1076 KVSV++P F ++ N ++ + ++ LP+ + + YG Y + + + G Sbjct: 188 KVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQAYCNSG 247 Query: 1077 LPDLSPVVDAITDALLAANPRHRYYP 1154 D+SPVV A+T AL + +P RY+P Sbjct: 248 STDISPVVSAVTHALTSRSPYTRYHP 273 >ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris] Length = 339 Score = 159 bits (403), Expect = 4e-39 Identities = 104/294 (35%), Positives = 149/294 (50%), Gaps = 1/294 (0%) Frame = +3 Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509 W L L Q LP + V ITGCDSGFG+ A +LD GF VLA+ L GA++L+ Sbjct: 33 WAVLWWLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQRGFRVLASC--LTPAGAEDLQ 90 Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689 S RL +D+T+P + R ++ + H GL+GLVNNAG ++ + Sbjct: 91 RVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWLTQDDF 150 Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869 + VN G + +T ALLPLL++S GR+V +SS G + Y SK + DS Sbjct: 151 HRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANG-GGYCVSKFGLEAFSDS 209 Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNG 1049 ++ +GV+VS+++P FRT V N++ E ++ A LP YGE ++ Sbjct: 210 LRRDVAHFGVRVSIVEPGFFRT-PVTNLEHLENTLQECWARLPPSTQAHYGEAFLPKYLQ 268 Query: 1050 QFLHSLSQGL-PDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 H +S PDL+ V + AL A PR RY PG L++ YLP L Sbjct: 269 VQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYLPASL 322 >ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris] Length = 317 Score = 156 bits (395), Expect = 3e-38 Identities = 106/279 (37%), Positives = 149/279 (53%), Gaps = 5/279 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ + GLWGLVNNAG +E + Y +VN G +E+T ++L Sbjct: 90 ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PLLRR+ GRIV VSS G + F AY +SK V D+ EL+ +GVK+S+++P Sbjct: 150 PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE-HLNGQFLHSLSQGL----PDLS 1091 FRT + +V ER +Q +P + +AYG+ + + H NG + QGL +L+ Sbjct: 209 FRT-GMTHVAWCLERLKQAWEEVPTHIKEAYGQKFFDAHHNG-----VKQGLLKCSTNLN 262 Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 V D + AL + +PR RY G + YLP L Sbjct: 263 LVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTSL 301 >ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris] Length = 317 Score = 155 bits (391), Expect = 1e-37 Identities = 102/271 (37%), Positives = 141/271 (52%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ + H GLWGLVNNAG + A E + ++VN G +E+T +LL Sbjct: 90 ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 L+R++ GR+V VSS G + C Y SK V DS EL +GVKV+VI+P Sbjct: 150 SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F T V N ++ ++ L E+ +AYGE+++ S +L V + Sbjct: 209 FSTN-VTNPEKISRGFQETWDRLSPEVREAYGEEFLASARKPIEKLKSMCDTNLYLVTNC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 + AL A +PR RY PG L+Y YLP Sbjct: 268 MEHALTACHPRTRYSPGWDAKLLYLPMSYLP 298 >ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris] Length = 319 Score = 154 bits (388), Expect = 2e-37 Identities = 103/273 (37%), Positives = 143/273 (52%), Gaps = 2/273 (0%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ + H GLWGLVNNAG + A E + ++VN G +E+T +LL Sbjct: 90 ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 L+R++ GR+V VSS G + C Y SK V DS EL +GVKV+VI+P Sbjct: 150 SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPD--LSPVV 1100 F T V N ++ ++ L E+ +AYGE++ + L + + D L V Sbjct: 209 FSTN-VTNPEKISRGFQETWDRLSPEVREAYGEEHARTPGKLAVKELLKSMCDTNLYLVT 267 Query: 1101 DAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 + + AL A +PR RY PG L+Y YLP Sbjct: 268 NCMEHALTACHPRTRYSPGWDAKLLYLPMSYLP 300 >ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris] Length = 323 Score = 152 bits (385), Expect = 5e-37 Identities = 105/282 (37%), Positives = 149/282 (52%), Gaps = 8/282 (2%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ + GLWGLVNNAG +E + Y +VN G +E+T ++L Sbjct: 90 ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PLLRR+ GRIV VSS G + F AY +SK V D+ EL+ +GVK+S+++P Sbjct: 150 PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHS----LSQGL----P 1082 FRT + +V ER +Q +P + +AYG+ + FL++ + QGL Sbjct: 209 FRT-GMTHVAWCLERLKQAWEEVPTHIKEAYGQKFFASF--LFLYTDHNGVKQGLLKCST 265 Query: 1083 DLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGL 1208 +L+ V D + AL + +PR RY G + YLP L Sbjct: 266 NLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTSL 307 >ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris] Length = 753 Score = 146 bits (369), Expect = 4e-35 Identities = 95/280 (33%), Positives = 145/280 (51%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 + + + ITGCD+GFG A+ D GF V+A L A L+A S RL + +D+ Sbjct: 461 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTA--LKAETSERLHTVLLDV 518 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + + Sbjct: 519 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISV 578 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T LLPL++++ GRI+ VSS G + Y SK AV DS +++ +GV VS Sbjct: 579 TLNLLPLVKKARGRIINVSSIGGRLAISG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 637 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P F+T + + + E+K + L ++ Q YGE YIE + + S DLS Sbjct: 638 IEPGLFKT-GLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTSFVNVDLS 696 Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLR 1211 VV+ + AL + P+ RY G + ++P L+ Sbjct: 697 LVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHMPAVLQ 736 >ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris] Length = 313 Score = 145 bits (367), Expect = 6e-35 Identities = 91/276 (32%), Positives = 141/276 (51%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 ++ + V ITGCDSGFG A++L G VLA + GAQ+L+ S RL+ +D+ Sbjct: 23 LSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEE--GAQKLQRDTSYRLQTTLLDV 80 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T+ I ++ + GLW LVNNAG + E + + VN G +E+ Sbjct: 81 TRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIEV 140 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T +LP+++++ GR+V +SS G + Y SK V DS EL +GVKVS+ Sbjct: 141 TLHMLPMVKKARGRVVNMSSSGGRVAL-IGGGYCVSKFGVEAFSDSIRRELHYFGVKVSI 199 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P +RT + D R R+L LPQE +YGE+Y + + + + P + Sbjct: 200 IEPGNYRTSILGKEDM-VSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQSAEPRIR 258 Query: 1092 PVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 V +++ A+++ +PR RY PG L+Y LP Sbjct: 259 EVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKLP 294 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,195,141 Number of Sequences: 33732 Number of extensions: 1352138 Number of successful extensions: 5549 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5450 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4733136205 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-001908 (1221 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_032315.1| hydroxysteroid 11-beta dehydrogenase 2 [Mus mus... 509 e-144 Alignment gi|NP_032316.1| hydroxysteroid (17-beta) dehydrogenase 2 [Mus m... 232 7e-61 Alignment gi|NP_780386.2| 3-hydroxybutyrate dehydrogenase (heart, mitocho... 162 9e-40 Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] 158 1e-38 Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 156 5e-38 Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 152 7e-37 Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 152 9e-37 Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 150 3e-36 Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 150 3e-36 Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 149 6e-36 >ref|NP_032315.1| hydroxysteroid 11-beta dehydrogenase 2 [Mus musculus] Length = 396 Score = 509 bits (1311), Expect = e-144 Identities = 253/362 (69%), Positives = 277/362 (76%) Frame = +3 Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314 ME WPWPSGGAW DWLC R Sbjct: 1 MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCLRLMPPPAALVV 60 Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494 GWIALSRLARP RLPVATRAVLITGCD+GFGK TAKKLDAMGFTVLATVL+L+SPG Sbjct: 61 LAGAGWIALSRLARPPRLPVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNSPG 120 Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674 A ELR CSPRLKLLQMDLTK DISRVLE TK HTASTGLWGLVNNAG NI+VAD LS Sbjct: 121 ALELRDLCSPRLKLLQMDLTKAEDISRVLEITKAHTASTGLWGLVNNAGLNIVVADVGLS 180 Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854 PVAT+R CMEVNFFG LE+TK LLPLLR S GRIV V SPAGDMP+PCL+AYGTSKAA+A Sbjct: 181 PVATFRKCMEVNFFGALELTKGLLPLLRHSRGRIVPVGSPAGDMPYPCLAAYGTSKAAIA 240 Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYI 1034 LLMD+F CEL PWG+KVS+I+P C +T AV NV+ WE+RK+ LLA +P+ELLQAYG DYI Sbjct: 241 LLMDTFGCELLPWGIKVSIIKPGCSKTAAVTNVNLWEKRKQLLLANIPRELLQAYGADYI 300 Query: 1035 EHLNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLPKGLRR 1214 EH++GQFL+SL LPDLSPVVDAI DALLAA PR RYYPG GLGLMYFIH+YLP+GLRR Sbjct: 301 EHVHGQFLNSLRMALPDLSPVVDAIIDALLAAQPRSRYYPGRGLGLMYFIHHYLPEGLRR 360 Query: 1215 RF 1220 F Sbjct: 361 CF 362 >ref|NP_032316.1| hydroxysteroid (17-beta) dehydrogenase 2 [Mus musculus] Length = 358 Score = 232 bits (591), Expect = 7e-61 Identities = 125/279 (44%), Positives = 167/279 (59%), Gaps = 1/279 (0%) Frame = +3 Query: 366 LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 545 LPV +AVL+TG DSGFG AK LD +GFTV A VL+ + PGA+ELR CS RL +LQM Sbjct: 79 LPVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSERLSVLQM 138 Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725 D+TKP I GLW +VNNAG L D EL P++ YR CM VNFFGT+ Sbjct: 139 DVTKPEQIKDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFFGTV 198 Query: 726 EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 905 E+TKA LPLLR+S GR+V VSS G +P SAY +KAA+ + EL WGVKV Sbjct: 199 EVTKAFLPLLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKV 258 Query: 906 SVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ-GLP 1082 I+P F+T + D W++ ++++L +++ + YG+DY+ H + +L + P Sbjct: 259 VTIKPGGFKTNITGSQDIWDKMEKEILDHFSKDIQENYGQDYV-HTQKLIIPTLKERSNP 317 Query: 1083 DLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 D++PV+ I A+ A NP YYPG L + Y P Sbjct: 318 DITPVLRDIQHAISARNPSSFYYPGRMAYLWVCLAAYCP 356 >ref|NP_780386.2| 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) [Mus musculus] Length = 343 Score = 162 bits (409), Expect = 9e-40 Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 5/263 (1%) Frame = +3 Query: 381 RAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQMDLT 554 +A+LITGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q+++ Sbjct: 56 KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115 Query: 555 KPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLE 728 ++ + +E + + G+WGLVNNAG + + E + + TY+ EVN +GT+ Sbjct: 116 NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWGTVR 174 Query: 729 MTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVS 908 TK+ LPLLRR+ GR+V +SS G M P S Y +K V D E+ P GVKVS Sbjct: 175 TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVS 234 Query: 909 VIQPACF-RTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPD 1085 V++P F ++ + ++ + +++ LP+ + + YG Y + + + G D Sbjct: 235 VVEPGNFIAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTD 294 Query: 1086 LSPVVDAITDALLAANPRHRYYP 1154 S V++A+T AL AA P RY+P Sbjct: 295 TSSVINAVTHALTAATPYTRYHP 317 >ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] Length = 318 Score = 158 bits (399), Expect = 1e-38 Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 3/293 (1%) Frame = +3 Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509 W L L Q LP + + ITGCDSGFG+ A +LD GF VLA L GA++L+ Sbjct: 12 WAVLWLLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLT--PSGAEDLQ 69 Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689 S RL +D+T P ++ +V ++ K TGL+GLVNNAG ++ + Sbjct: 70 QMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDF 129 Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869 + + VN G + +T ALLPLL+++ GR+V ++S G + Y SK + DS Sbjct: 130 QRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANG-GGYCVSKFGLEAFSDS 188 Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIE---H 1040 ++ P+GV+VS+++P FRT V N++ E + A LP + YGE +++ Sbjct: 189 LRRDMAPFGVQVSIVEPGFFRT-PVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLR 247 Query: 1041 LNGQFLHSLSQGLPDLSPVVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 + + ++ + P+L+ V + AL A +PR RY PG L++ YLP Sbjct: 248 VQRRIMNLICD--PELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLP 298 >ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus] Length = 319 Score = 156 bits (394), Expect = 5e-38 Identities = 95/262 (36%), Positives = 142/262 (54%) Frame = +3 Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551 +A + V ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+ Sbjct: 27 IADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLT--ESGSAALKAKTSERLHTVLLDV 84 Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731 T P ++ + ++ K H GLWGL+NNAG ++A + V YR +EVN FG + + Sbjct: 85 TDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVNLFGLINV 144 Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911 T +LPL++++ GR++ VSS G + F Y SK AV DS +++ +GV VS Sbjct: 145 TLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203 Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLS 1091 I+P F+TE + + E+K + L ++ Q YGE YIE + + S DLS Sbjct: 204 IEPGLFKTELADPI-KTTEKKLAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSVNLDLS 262 Query: 1092 PVVDAITDALLAANPRHRYYPG 1157 VV + AL + P+ RY G Sbjct: 263 LVVGCMDHALTSLFPKTRYIAG 284 >ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] Length = 317 Score = 152 bits (384), Expect = 7e-37 Identities = 100/271 (36%), Positives = 139/271 (51%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ K + GLWGLVNNAG +I E + ++VN G +E+T ++L Sbjct: 90 IVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNLLGLIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR++ V+S G + C AY SK V DS EL +GVKV++I+P Sbjct: 150 PLVRKARGRVINVASVLGRVSL-CGGAYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 208 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 F T V + + + L E+ + YGE Y+ + + DLS V D Sbjct: 209 FLT-GVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCNKDLSLVTDC 267 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 + AL A +PR RY G L Y YLP Sbjct: 268 MEHALTACHPRTRYSAGWDAKLFYLPLSYLP 298 >ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus] Length = 318 Score = 152 bits (383), Expect = 9e-37 Identities = 100/275 (36%), Positives = 142/275 (51%), Gaps = 4/275 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ K + GLWGLVNNAG ++ + ++ + S ++VN G +E+T +L Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVNLLGMIEVTLTML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V VSS G + Y SK V DS EL +GVKV++I+P Sbjct: 150 PLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 209 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQ----GLPDLSP 1094 F T + + + L E+ + YGE Y+ +L SL++ DLS Sbjct: 210 FLTGMASSA-RLSSNTQMLWDQTSSEIREIYGEKYLAF----YLKSLNELDKRCNKDLSL 264 Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 V D + AL A +PR RY G L + YLP Sbjct: 265 VTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYLP 299 >ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] Length = 317 Score = 150 bits (379), Expect = 3e-36 Identities = 99/275 (36%), Positives = 140/275 (50%), Gaps = 4/275 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ K + GLWGLVNNAG + E + ++VN G +E+T ++L Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLGMIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914 PL+R++ GR+V VSS G M F C+S YG V DS EL +GVKV++I Sbjct: 150 PLVRKARGRVVNVSSVMGRMSFFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAII 204 Query: 915 QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094 +P F+T V + D+ + + E+ + YGE ++ + DLS Sbjct: 205 EPGGFKT-CVTSSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLSV 263 Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 V D + AL A +PR RY G ++ YLP Sbjct: 264 VTDCMEHALTARHPRTRYSAGWDAKFLFLPLSYLP 298 >ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] Length = 316 Score = 150 bits (379), Expect = 3e-36 Identities = 95/271 (35%), Positives = 140/271 (51%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEQLRNKTSDRLETVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ K + GLWGLVNNAG + + L + + ++VN G +E+T ++L Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGICVFAINEWLKK-EDFANILDVNLLGMIEVTLSML 148 Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926 PL+R++ GR+V +SS G + C Y SK V DS E+ +GVKV++I+P Sbjct: 149 PLVRKARGRVVNISSSMGRVSL-CGGGYCISKYGVEAFSDSLRREISYFGVKVAIIEPGG 207 Query: 927 FRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVVDA 1106 FRT V N ++ +L E+ + Y +++++ DLS V D Sbjct: 208 FRTN-VSNYERLSHSIEKLWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLSVVTDC 266 Query: 1107 ITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 + AL A +PR RY G L Y Y+P Sbjct: 267 MEHALTACHPRTRYSAGWDAKLFYLPLSYMP 297 >ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] Length = 317 Score = 149 bits (376), Expect = 6e-36 Identities = 101/275 (36%), Positives = 139/275 (50%), Gaps = 4/275 (1%) Frame = +3 Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566 V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK Sbjct: 32 VFITGCDSGFGTLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89 Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746 I ++ K H + GLWGLVNNAG + E + ++VN G +E+T ++L Sbjct: 90 IVTATQWVKEHVGNRGLWGLVNNAGISTPSGPNEWMKKQDFAHVLDVNLLGMIEVTLSML 149 Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914 PL+R++ GR+V VSS G + C+S YG V DS EL +GVKV++I Sbjct: 150 PLVRKARGRVVNVSSVMGRVSLFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAII 204 Query: 915 QPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSP 1094 +P F T V + + + L E+ + YGE Y+ + + DLS Sbjct: 205 EPGFFLT-GVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNKLDKRCNKDLSG 263 Query: 1095 VVDAITDALLAANPRHRYYPGHGLGLMYFIHYYLP 1199 V D + AL A +PR RY G L Y YLP Sbjct: 264 VTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLP 298 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,563,587 Number of Sequences: 45328 Number of extensions: 1549435 Number of successful extensions: 6676 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6580 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5089235100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)