Animal-Genome cDNA 20060611C-005275


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005275
         (1213 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999497.1| G-beta like protein [Sus scrofa]                     602   e-174
Alignment   gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a...   125   3e-30
Alignment   gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ...    62   4e-11

>ref|NP_999497.1| G-beta like protein [Sus scrofa]
          Length = 317

 Score =  602 bits (1552), Expect = e-174
 Identities = 288/289 (99%), Positives = 289/289 (100%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 181  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 241  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289


>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
           scrofa]
          Length = 410

 Score =  125 bits (313), Expect = 3e-30
 Identities = 88/277 (31%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS +RDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370



 Score = 99.0 bits (245), Expect = 2e-22
 Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S + D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408


>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
          Length = 493

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 8/219 (3%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L+GH   V  +A      D + S SRD+ I+   +          +R L+GH   V  + 
Sbjct: 267 LEGHTARVGALAWNA---DQLSSGSRDRMILQRDIRTPPLQ---SERRLQGHRQEVCGLK 320

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDK 515
            S+D Q   SG  D  L +W+ ++ +  +++  H   V ++A+S     +++   G+ D+
Sbjct: 321 WSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADR 380

Query: 516 TIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANC 680
            I+ WNTL      C  T     +  W          +N ++ + G+ +  + VW   + 
Sbjct: 381 CIRFWNTLTGQPLQCIDTGSQVCNLAW-------SKHANELVSTHGYSQNQILVWKYPSL 433

Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 797
                  GH+  +  + +SPDG    +G  D     W++
Sbjct: 434 TQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472



 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 10/239 (4%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           +LS      + +W     +    +   ++ G S  V+ V  S  G     G+  G +++W
Sbjct: 200 VLSVGLGTCVYLWSACTSQVTR-LCDLSVEGDS--VTSVGWSERGNLVAVGTHKGFVQIW 256

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE----S 572
           D   G       GHT  V ++A+++D  Q+ SGSRD+ I       +    +Q E     
Sbjct: 257 DAAAGKKLSMLEGHTARVGALAWNAD--QLSSGSRDRMIL---QRDIRTPPLQSERRLQG 311

Query: 573 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGS 749
           H + V  +++S  + + ++ S G D  + VWN ++      +  H   +  +  SP    
Sbjct: 312 HRQEVCGLKWS--TDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHG 369

Query: 750 LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS---IKIW 911
           L ASGG   D     W+   G+ L  +D G  +  L +S +   L +  G S   I +W
Sbjct: 370 LLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVW 428


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,114,660
Number of Sequences: 1040
Number of extensions: 29776
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 114197040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005275
         (1213 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_786996.1| guanine nucleotide binding protein (G protein),...   602   e-172
Alignment   gi|XP_589608.2| PREDICTED: similar to Guanine nucleotide-bindin...   357   1e-98
Alignment   gi|XP_881436.1| PREDICTED: similar to Guanine nucleotide-bindin...   164   2e-40
Alignment   gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso...   126   4e-29
Alignment   gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos...   113   3e-25
Alignment   gi|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase ...   107   2e-23
Alignment   gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [...   104   2e-22
Alignment   gi|NP_001033649.1| WD repeat domain 51A [Bos taurus]                 102   6e-22
Alignment   gi|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase ...   102   8e-22
Alignment   gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]         101   1e-21

>ref|NP_786996.1| guanine nucleotide binding protein (G protein), beta polypeptide
            2-like 1 [Bos taurus]
          Length = 317

 Score =  602 bits (1552), Expect = e-172
 Identities = 288/289 (99%), Positives = 289/289 (100%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 181  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 241  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289


>ref|XP_589608.2| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 1 [Bos
            taurus]
          Length = 228

 Score =  357 bits (916), Expect = 1e-98
 Identities = 167/170 (98%), Positives = 169/170 (99%)
 Frame = +3

Query: 492  IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 671
            I+S SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL
Sbjct: 31   ILSASRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 90

Query: 672  ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 851
            ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL
Sbjct: 91   ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 150

Query: 852  CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 151  CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 200



 Score =  124 bits (310), Expect = 2e-28
 Identities = 85/233 (36%), Positives = 115/233 (49%), Gaps = 9/233 (3%)
 Frame = +3

Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
           MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI +W  T     Y +   +  
Sbjct: 1   MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIKLWN-TLGVCKYTVQDES-- 57

Query: 315 GHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488
            HS +VS V  S  S     +S  WD  +++W+L         +GHT  + +V  S D  
Sbjct: 58  -HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 116

Query: 489 QIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPN------SSNPIIVSCGWD 647
              SG +D    LW+   G   YT+      + ++ + FSPN      ++ P I     +
Sbjct: 117 LCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLE 173

Query: 648 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 806
             + V  L    + T+         ++  S DG    +G  D    +W +  G
Sbjct: 174 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 226


>ref|XP_881436.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 2 [Bos
            taurus]
          Length = 126

 Score =  164 bits (414), Expect = 2e-40
 Identities = 76/78 (97%), Positives = 78/78 (100%)
 Frame = +3

Query: 768  KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 947
            +DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK
Sbjct: 21   QDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 80

Query: 948  QEVISTSSKAKPPQCTSL 1001
            QEVISTSSKA+PPQCTSL
Sbjct: 81   QEVISTSSKAEPPQCTSL 98


>ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Bos taurus]
          Length = 410

 Score =  126 bits (316), Expect = 4e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVEDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370



 Score =  100 bits (248), Expect = 3e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVEDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408


>ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus]
          Length = 495

 Score =  113 bits (283), Expect = 3e-25
 Identities = 78/257 (30%), Positives = 117/257 (45%), Gaps = 46/257 (17%)
 Frame = +3

Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479
           +R  +GH   ++ V  S +G+   +GSWD  L LW L       R+VGH   + SV FS 
Sbjct: 28  ERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSP 87

Query: 480 DNRQIVSGSRDKTIKLW-------------NTLGV-----------CKYTVQDES----- 572
               + S SRD+TI+LW             +T  V                +D+S     
Sbjct: 88  LGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWN 147

Query: 573 ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716
                       H+ WV C +FSP+    +IVSC  DK +K+W+  N +   N     G+
Sbjct: 148 MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDFVGF 205

Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884
            N V  +P+G+  AS G D    +WD+   K   H     GG  +N + F P+  Y + A
Sbjct: 206 ANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGG--VNCVSFHPSGNYLITA 263

Query: 885 ATGPSIKIWD-LEGKII 932
           ++  ++KI D LEG++I
Sbjct: 264 SSDGTLKILDLLEGRLI 280



 Score =  110 bits (275), Expect = 2e-24
 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)
 Frame = +3

Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335
           GH   +T +  +P   +++ SASRD+TI +W          IP +       + H+  V 
Sbjct: 75  GHKDVITSVQFSP-LGNLLASASRDRTIRLW----------IPDKRGKSSEFKAHTAPVR 123

Query: 336 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515
            V  S+DGQF  S S D ++++W++           HT  V    FS D R IVS S DK
Sbjct: 124 SVDFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 183

Query: 516 TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692
           TIK+W+T    K  V + S    + + V F+PN +   I S G D  VK+W++   KL  
Sbjct: 184 TIKIWDTTN--KQCVNNFSDFVGFANFVAFNPNGT--CIASAGSDHTVKIWDIRVNKLLQ 239

Query: 693 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
           ++  H+G +N V+  P G+   +   DG   + DL EG+ +YTL G
Sbjct: 240 HYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG 285



 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 63/192 (32%), Positives = 95/192 (49%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + SAS DK+I +W + R    Y     +L  H+H+V     S DG+  +S S D T+++W
Sbjct: 134 LASASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 188

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           D T       F         VAF+ +   I S   D T+K+W+ + V K     + HS  
Sbjct: 189 DTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWD-IRVNKLLQHYQVHSGG 247

Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764
           V+CV F P+ +   +++   D  +K+ +L   +L     GHTG + TV+ S  G L  SG
Sbjct: 248 VNCVSFHPSGN--YLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSG 305

Query: 765 GKDGQAMLWDLN 800
           G D Q +LW  N
Sbjct: 306 GADAQVLLWRTN 317


>ref|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 600

 Score =  107 bits (267), Expect = 2e-23
 Identities = 79/230 (34%), Positives = 109/230 (47%), Gaps = 3/230 (1%)
 Frame = +3

Query: 150 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 329
           T R  L GH G V      P     +LS S D +I  W L    TN  + Q    GH++ 
Sbjct: 344 TERKVLLGHCGPVYSTRFLPD-SSALLSCSEDTSIRYWDL-ESFTNTVLYQ----GHAYP 397

Query: 330 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 509
           V D+ IS    F  S S+D T RLW        R + GH   V  V F  ++  + +GS 
Sbjct: 398 VWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGST 457

Query: 510 DKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680
           DKT++LW+      V  +T     H   V C+ FSPN     +VS G D+L+K+W+LA+ 
Sbjct: 458 DKTVRLWSAQQGNSVRLFT----GHCGPVRCLAFSPNGQ--YLVSAGEDQLLKLWDLASG 511

Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
            L  +  GHT  + +VT S D S+ AS   D    +WD+    +    DG
Sbjct: 512 TLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKSKHNSTPADG 561



 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 2/219 (0%)
 Frame = +3

Query: 276 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 455
           +E      ++ L GH   V       D    LS S D ++R WDL + T T  + GH   
Sbjct: 338 EEDRTATERKVLLGHCGPVYSTRFLPDSSALLSCSEDTSIRYWDLESFTNTVLYQGHAYP 397

Query: 456 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 635
           V  +  S  +    S S D T +LW+        +    H   V CV+F PNS+   + +
Sbjct: 398 VWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIY-AGHLAGVDCVKFHPNSN--YLAT 454

Query: 636 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 815
              DK V++W+           GH G +  +  SP+G    S G+D    LWDL  G   
Sbjct: 455 GSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLY 514

Query: 816 YTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGK 926
             L G  D I ++ FS +   + +A+   S++IWD++ K
Sbjct: 515 KDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKSK 553



 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
 Frame = +3

Query: 231 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 410
           SAS D T  +W   R       P R   GH   V  V    +  +  +GS D T+RLW  
Sbjct: 412 SASYDHTARLWSFDRT-----YPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSA 466

Query: 411 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 590
             G + R F GH   V  +AFS + + +VS   D+ +KLW+      Y      H++ ++
Sbjct: 467 QQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYK-DLHGHTDDIT 525

Query: 591 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG--------HTGYLNTV 728
            V FS +SS  +I S   D  V++W++ +    T   G        +TG ++TV
Sbjct: 526 SVTFSLDSS--VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTV 577



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 45/137 (32%), Positives = 66/137 (48%)
 Frame = +3

Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350
           GH   V  +   P   + + + S DKT+ +W   +     G   R   GH   V  +  S
Sbjct: 435 GHLAGVDCVKFHPN-SNYLATGSTDKTVRLWSAQQ-----GNSVRLFTGHCGPVRCLAFS 488

Query: 351 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 530
            +GQ+ +S   D  L+LWDL +GT  +   GHT D+ SV FS D+  I S S D ++++W
Sbjct: 489 PNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIW 548

Query: 531 NTLGVCKYTVQDESHSE 581
           +       T  D S SE
Sbjct: 549 DIKSKHNSTPADGSSSE 565


>ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus]
          Length = 800

 Score =  104 bits (259), Expect = 2e-22
 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
 Frame = +3

Query: 303  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482
            + L GHS  V     S D  + LS S DGT+RLW L T T    + GH   V    FS  
Sbjct: 537  KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596

Query: 483  NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662
                VSG  D+  +LW T       +    H   V+C RF PNS+   + +   D+ V++
Sbjct: 597  GYYFVSGGHDRVARLWATDHYQPLRI-FAGHLADVNCTRFHPNSN--YVATGSADRTVRL 653

Query: 663  WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839
            W++ N        GH G ++++T SP+G   A+G  DG+ +LWD+  G  +  L G  D 
Sbjct: 654  WDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDT 713

Query: 840  INALCFSPNRYWLCAAT-GPSIKIWD 914
            + +L FS +   L + +   ++++WD
Sbjct: 714  VCSLRFSRDGEILASGSMDNTVRLWD 739



 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
 Frame = +3

Query: 396  RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 575
            R+ D  T +  +   GH+  V   +FS D   ++S S D T++LW +L      V  + H
Sbjct: 526  RIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW-SLQTFTCLVGYKGH 584

Query: 576  SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755
            +  V   +FSP       VS G D++ ++W   + +      GH   +N     P+ +  
Sbjct: 585  NYPVWDTQFSPYGY--YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYV 642

Query: 756  ASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGK 926
            A+G  D    LWD+  G    ++T   G  I++L FSPN R+    AT   + +WD+   
Sbjct: 643  ATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHG 701

Query: 927  IIVDELK 947
            ++V ELK
Sbjct: 702  LMVGELK 708



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
 Frame = +3

Query: 168  KGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
            KGHN   W TQ +    +    +S   D+   +W      T++  P R   GH   V+  
Sbjct: 582  KGHNYPVWDTQFSPYGYY---FVSGGHDRVARLWA-----TDHYQPLRIFAGHLADVNCT 633

Query: 342  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
                +  +  +GS D T+RLWD+  G   R F GH   + S+ FS + R + +G+ D  +
Sbjct: 634  RFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 693

Query: 522  KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668
             LW+ +G      + + H++ V  +RFS +    I+ S   D  V++W+
Sbjct: 694  LLWD-IGHGLMVGELKGHTDTVCSLRFSRDGE--ILASGSMDNTVRLWD 739



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 33/105 (31%), Positives = 53/105 (50%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + + S D+T+ +W +       G   R   GH   +  +  S +G+F  +G+ DG + LW
Sbjct: 642 VATGSADRTVRLWDVLN-----GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 696

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 539
           D+  G       GHT  V S+ FS D   + SGS D T++LW+ +
Sbjct: 697 DIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAV 741


>ref|NP_001033649.1| WD repeat domain 51A [Bos taurus]
          Length = 407

 Score =  102 bits (254), Expect = 6e-22
 Identities = 79/301 (26%), Positives = 116/301 (38%), Gaps = 44/301 (14%)
 Frame = +3

Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320
           E  +L    KGH   VT +  +      + S S D  +++W +      Y        GH
Sbjct: 7   EDPSLERHFKGHRDAVTSVDFSLN-TKQLASGSMDSCLMVWHMKPQTRAY-----RFAGH 60

Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500
              V+ V  S  G    SGS D T+R+W       +  F  HT  V SV F SD +  V+
Sbjct: 61  KDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVT 120

Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680
            S DKT+K+W+T    K+      H  WV C +FSP+    +IVS   DK VK+W+  + 
Sbjct: 121 ASDDKTVKVWSTHRQ-KFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSR 177

Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD---------------------- 794
           +   ++  H G++  V   P G+  A+ G D    +WD                      
Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSF 237

Query: 795 --------------------LNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKI 908
                               L EG+ LYTL G  G            Y+    +   + +
Sbjct: 238 HPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMV 297

Query: 909 W 911
           W
Sbjct: 298 W 298



 Score =  100 bits (249), Expect = 2e-21
 Identities = 72/256 (28%), Positives = 112/256 (43%), Gaps = 45/256 (17%)
 Frame = +3

Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479
           +R  +GH   V+ V  S + +   SGS D  L +W +   T   RF GH   V  V FS 
Sbjct: 12  ERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSP 71

Query: 480 DNRQIVSGSRDKTIKLW------------------NTLGVC------------------- 548
               + SGSRDKT+++W                   ++  C                   
Sbjct: 72  SGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWS 131

Query: 549 ----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716
               K+      H  WV C +FSP+    +IVS   DK VK+W+  + +   ++  H G+
Sbjct: 132 THRQKFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189

Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPN-RYWLCAA 887
           +  V   P G+  A+ G D    +WD+   + L  Y L     +NAL F P+  Y + A+
Sbjct: 190 VTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNALSFHPSGNYLVTAS 248

Query: 888 TGPSIKIWDL-EGKII 932
           +  ++KI DL EG+++
Sbjct: 249 SDSTLKILDLMEGRLL 264



 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 56/191 (29%), Positives = 89/191 (46%)
 Frame = +3

Query: 228 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 407
           ++AS DKT+ +W   R +  + + Q     H ++V     S DG+  +S S D T++LWD
Sbjct: 119 VTASDDKTVKVWSTHRQKFLFSLSQ-----HINWVRCAKFSPDGRLIVSASDDKTVKLWD 173

Query: 408 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 587
            T+      +  H   V  V F      I +   D T+K+W+ +   +     + HS  V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAV 232

Query: 588 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 767
           + + F P+ +   +V+   D  +K+ +L   +L     GH G   TV  S  G   ASGG
Sbjct: 233 NALSFHPSGN--YLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG 290

Query: 768 KDGQAMLWDLN 800
            D Q M+W  N
Sbjct: 291 SDEQVMVWKSN 301


>ref|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 310

 Score =  102 bits (253), Expect = 8e-22
 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 4/245 (1%)
 Frame = +3

Query: 195 IATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSDGQFA 368
           ++T  Q P   L A  +  + + KL+ D+   N G   + LRGH   V      +D    
Sbjct: 19  LSTQRQDPLPGLPAPNEDILRLNKLSGDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGL 78

Query: 369 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 548
           LS S D ++R WDL + T T  + GH   V  +  S  +    S S D+T +LW+     
Sbjct: 79  LSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTY 138

Query: 549 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 728
              +    H   V CV+F PNS+   + +   DK V++W+           GH G + ++
Sbjct: 139 PLRIY-AGHLADVDCVKFHPNSN--YLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSL 195

Query: 729 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSI 902
             SP+G   AS G+D +  LWDL  G     L G  D I +L FSP+   + +A+   S+
Sbjct: 196 AFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSV 255

Query: 903 KIWDL 917
           ++WD+
Sbjct: 256 RVWDI 260



 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 76/227 (33%), Positives = 107/227 (47%), Gaps = 5/227 (2%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 338
           L+GH G    + +T    D   +LS S D +I  W L    TN  + Q    GH++ V D
Sbjct: 59  LRGHCG---PVYSTRFLADSSGLLSCSEDMSIRYWDLG-SFTNTVLYQ----GHAYPVWD 110

Query: 339 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 518
           + IS    +  S S D T RLW        R + GH  DV  V F  ++  + +GS DKT
Sbjct: 111 LDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKT 170

Query: 519 IKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 689
           ++LW+T     V  +T     H   V  + FSPN     + S G D+ +K+W+LA+  L 
Sbjct: 171 VRLWSTQQGNSVRLFT----GHRGPVLSLAFSPNGK--YLASAGEDQRLKLWDLASGTLY 224

Query: 690 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
               GHT  + ++T SPD SL AS   D    +WD+         DG
Sbjct: 225 KELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADG 271



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 51/163 (31%), Positives = 79/163 (48%)
 Frame = +3

Query: 231 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 410
           SAS D+T  +W   R       P R   GH   V  V    +  +  +GS D T+RLW  
Sbjct: 122 SASHDRTARLWSFDRT-----YPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWST 176

Query: 411 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 590
             G + R F GH   VLS+AFS + + + S   D+ +KLW+      Y  +   H++ ++
Sbjct: 177 QQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYK-ELRGHTDNIT 235

Query: 591 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 719
            + FSP+SS  ++ S   D  V+VW++ +    T   G +  L
Sbjct: 236 SLTFSPDSS--LVASASMDNSVRVWDIRSSHCSTPADGSSSEL 276



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
 Frame = +3

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           D   GT  +   GH   V S  F +D+  ++S S D +I+ W+ LG    TV  + H+  
Sbjct: 49  DDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWD-LGSFTNTVLYQGHAYP 107

Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764
           V  +  SP+S      S   D+  ++W+         + GH   ++ V   P+ +  A+G
Sbjct: 108 VWDLDISPHSL--YFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATG 165

Query: 765 GKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIV 935
             D    LW   +G    L+T   G +++ L FSPN +Y   A     +K+WDL    + 
Sbjct: 166 STDKTVRLWSTQQGNSVRLFTGHRGPVLS-LAFSPNGKYLASAGEDQRLKLWDLASGTLY 224

Query: 936 DELKQEVISTSSKAKPP 986
            EL+    + +S    P
Sbjct: 225 KELRGHTDNITSLTFSP 241



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 39/121 (32%), Positives = 60/121 (49%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + + S DKT+ +W      T  G   R   GH   V  +  S +G++  S   D  L+LW
Sbjct: 162 LATGSTDKTVRLWS-----TQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLW 216

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           DL +GT  +   GHT ++ S+ FS D+  + S S D ++++W+       T  D S SE 
Sbjct: 217 DLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSEL 276

Query: 585 V 587
           V
Sbjct: 277 V 277



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
 Frame = +3

Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350
           GH G V  +A +P     + SA  D+ + +W L       G   + LRGH+  ++ +  S
Sbjct: 187 GHRGPVLSLAFSPN-GKYLASAGEDQRLKLWDLAS-----GTLYKELRGHTDNITSLTFS 240

Query: 351 SDGQFALSGSWDGTLRLWDLTT--------GTTTRR---FVGHTKDVLSVAFSSDNRQIV 497
            D     S S D ++R+WD+ +        G+++     + G   +VLSV F + N  +V
Sbjct: 241 PDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLV 300

Query: 498 SG 503
           +G
Sbjct: 301 TG 302


>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
          Length = 441

 Score =  101 bits (252), Expect = 1e-21
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 1/224 (0%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           T +GH   +  ++  PQ   ++ + S D T  +W +   E  +      L GHS  +  +
Sbjct: 198 TFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQSGEEVF-----TLTGHSAEIISL 251

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
             ++ G   ++GS+D T+ +W+  TG      +GH  ++ S  F+ D   I++GS DKT 
Sbjct: 252 SFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTC 311

Query: 522 KLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698
           KLW+ + G C  T+         SC  +    +  +I +   D   ++++ A  +  T  
Sbjct: 312 KLWDAVNGKCVATLTGHDDEILDSCFDY----TGKLIATASADGTARIFSAATRECVTKL 367

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
            GH G ++ ++ +P G+   +G  D  A +WD   G+ L  L+G
Sbjct: 368 EGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEG 411



 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 4/257 (1%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TL+GH   V  IA    + D I + S DKT  +W +   ET  G      RGH+  +  +
Sbjct: 155 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV---ET--GKCYHTFRGHTAEIVCL 209

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
             +       +GS D T +LWD+ +G       GH+ +++S++F++   +I++GS D T+
Sbjct: 210 SFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTV 269

Query: 522 KLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698
            +W    G   YT+    H   +S   F+ + S  +I++   DK  K+W+  N K     
Sbjct: 270 TVWEADTGRKVYTL--IGHCAEISSAVFNWDCS--LILTGSMDKTCKLWDAVNGKCVATL 325

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP--NR 869
            GH   +        G L A+   DG A ++     + +  L+G +  I+ + F+P  NR
Sbjct: 326 TGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNR 385

Query: 870 YWLCAATGPSIKIWDLE 920
             L  ++  + +IWD +
Sbjct: 386 L-LTGSSDKTARIWDAQ 401



 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 57/215 (26%), Positives = 111/215 (51%), Gaps = 5/215 (2%)
 Frame = +3

Query: 303 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482
           + LR H   +++V ++  G   ++GS+D T +LWD  +G       GH   V ++AF++ 
Sbjct: 112 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 171

Query: 483 -NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 656
              +I +GS DKT KLW+   G C +T +   H+  + C+ F+P S+  ++ +   D   
Sbjct: 172 YGDKIATGSFDKTCKLWSVETGKCYHTFR--GHTAEIVCLSFNPQST--LVATGSMDTTA 227

Query: 657 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-- 830
           K+W++ + +      GH+  + +++ +  G+   +G  D    +W+ + G+ +YTL G  
Sbjct: 228 KLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHC 287

Query: 831 GDIINALCFSPNRYWLCAATGPSIKIWD-LEGKII 932
            +I +A+        L  +   + K+WD + GK +
Sbjct: 288 AEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCV 322



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 2/205 (0%)
 Frame = +3

Query: 228 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLW 404
           ++ S D+T  +W     +T  G     L GH + V  +  ++  G    +GS+D T +LW
Sbjct: 134 ITGSYDRTCKLW-----DTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLW 188

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSE 581
            + TG     F GHT +++ ++F+  +  + +GS D T KLW+   G   +T+   S   
Sbjct: 189 SVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHS--- 245

Query: 582 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 761
               +  S N+S   I++  +D  V VW     +     IGH   +++   + D SL  +
Sbjct: 246 -AEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILT 304

Query: 762 GGKDGQAMLWDLNEGKHLYTLDGGD 836
           G  D    LWD   GK + TL G D
Sbjct: 305 GSMDKTCKLWDAVNGKCVATLTGHD 329



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 27/74 (36%), Positives = 41/74 (55%)
 Frame = +3

Query: 309 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488
           L GH   +S +  +  G   L+GS D T R+WD  TG   +   GHT ++ S AF+    
Sbjct: 367 LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGD 426

Query: 489 QIVSGSRDKTIKLW 530
            I++GS+D T ++W
Sbjct: 427 IIITGSKDNTCRIW 440


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,252,917
Number of Sequences: 33508
Number of extensions: 1129479
Number of successful extensions: 6525
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5120
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 3775710406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005275
         (1213 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855850.1| PREDICTED: similar to Guanine nucleotide-bindin...   602   e-172
Alignment   gi|XP_537934.2| PREDICTED: similar to Guanine nucleotide-bindin...   593   e-169
Alignment   gi|XP_855931.1| PREDICTED: similar to Guanine nucleotide-bindin...   504   e-143
Alignment   gi|XP_855887.1| PREDICTED: similar to Guanine nucleotide-bindin...   155   7e-38
Alignment   gi|XP_537775.2| PREDICTED: similar to platelet-activating facto...   126   5e-29
Alignment   gi|XP_854482.1| PREDICTED: similar to platelet-activating facto...   126   5e-29
Alignment   gi|XP_868508.1| PREDICTED: similar to platelet-activating facto...   126   5e-29
Alignment   gi|XP_868519.1| PREDICTED: similar to platelet-activating facto...   124   2e-28
Alignment   gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof...   121   2e-27
Alignment   gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can...   111   2e-24

>ref|XP_855850.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 3
            [Canis familiaris]
          Length = 302

 Score =  602 bits (1552), Expect = e-172
 Identities = 288/289 (99%), Positives = 289/289 (100%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 181  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 241  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289


>ref|XP_537934.2| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 1
            [Canis familiaris]
          Length = 316

 Score =  593 bits (1528), Expect = e-169
 Identities = 286/289 (98%), Positives = 287/289 (99%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQ  SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQG-SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 179

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 180  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 239

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 240  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 288


>ref|XP_855931.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 5
            [Canis familiaris]
          Length = 280

 Score =  504 bits (1298), Expect = e-143
 Identities = 251/289 (86%), Positives = 252/289 (87%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV      
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV------ 174

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
                                           KDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 175  -------------------------------KDGQAMLWDLNEGKHLYTLDGGDIINALC 203

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 204  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 252


>ref|XP_855887.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) isoform 4
            [Canis familiaris]
          Length = 101

 Score =  155 bits (392), Expect = 7e-38
 Identities = 72/73 (98%), Positives = 73/73 (100%)
 Frame = +3

Query: 783  MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS 962
            MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS
Sbjct: 1    MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS 60

Query: 963  TSSKAKPPQCTSL 1001
            TSSKA+PPQCTSL
Sbjct: 61   TSSKAEPPQCTSL 73


>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 1 [Canis familiaris]
          Length = 372

 Score =  126 bits (316), Expect = 5e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 66  LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 119

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 120 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 179

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 180 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 235

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 236 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 295

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 296 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 332



 Score =  100 bits (248), Expect = 4e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 107 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 160

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 161 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 220

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 221 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 278

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 279 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 338

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 339 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 370


>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 2 [Canis familiaris]
          Length = 410

 Score =  126 bits (316), Expect = 5e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370



 Score =  100 bits (248), Expect = 4e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408


>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 3 [Canis familiaris]
          Length = 345

 Score =  126 bits (316), Expect = 5e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 39  LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 92

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 93  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 152

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 153 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 208

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 209 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 268

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 269 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 305



 Score =  100 bits (248), Expect = 4e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 80  TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 133

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 134 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 193

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 194 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 251

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 252 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 311

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 312 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 343


>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 5 [Canis familiaris]
          Length = 415

 Score =  124 bits (311), Expect = 2e-28
 Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 28/282 (9%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD-------------------------GSLCASGGKDGQAMLWDLNEG 806
            H   +  ++ +P+                         G    SG +D    +WD++ G
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTG 333

Query: 807 KHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
             L TL G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 375



 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 26/277 (9%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS-----------------------NPII 629
           ++W      CK  +++  H   V C+ ++P SS                        P +
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFL 316

Query: 630 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 809
           +S   DK +K+W+++        +GH  ++  V     G    S   D    +WD    +
Sbjct: 317 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 376

Query: 810 HLYTLDGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
            + TL+  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 413


>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
           familiaris]
          Length = 406

 Score =  121 bits (303), Expect = 2e-27
 Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 4/268 (1%)
 Frame = +3

Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320
           E  +L    KGH   +T +  +      + S S D  +++W +      Y        GH
Sbjct: 7   EDPSLERHFKGHRDAITSVDFSLN-TKQLASGSMDSCLMVWHMKPQSRAY-----RFAGH 60

Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500
              V+ V  S  G    SGS D T+R+W       +  F  HT  V SV F SD + +V+
Sbjct: 61  KDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVT 120

Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680
            S DKT+K+W+T    K+      H  WV C RFSP+    +IVS   DK VK+W+  + 
Sbjct: 121 ASDDKTVKVWSTHRQ-KFLFSLSQHINWVRCARFSPDGR--LIVSASDDKTVKLWDKTSR 177

Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALC 854
           +   ++  H G++  V   P G+  A+   D    +WD+   + L  Y L     +NAL 
Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSA-AVNALS 236

Query: 855 FSPN-RYWLCAATGPSIKIWDL-EGKII 932
           F P+  Y L A++  ++KI DL EG+++
Sbjct: 237 FHPSGNYLLTASSDSTLKILDLMEGRLL 264



 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 56/192 (29%), Positives = 91/192 (47%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           +++AS DKT+ +W   R +  + + Q     H ++V     S DG+  +S S D T++LW
Sbjct: 118 LVTASDDKTVKVWSTHRQKFLFSLSQ-----HINWVRCARFSPDGRLIVSASDDKTVKLW 172

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           D T+      +  H   V  V F      I + S D T+K+W+ +   +     + HS  
Sbjct: 173 DKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWD-VRTHRLLQHYQLHSAA 231

Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764
           V+ + F P+ +   +++   D  +K+ +L   +L     GH G   TV  S  G   ASG
Sbjct: 232 VNALSFHPSGN--YLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASG 289

Query: 765 GKDGQAMLWDLN 800
           G D Q M+W  N
Sbjct: 290 GSDEQVMVWKSN 301



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 35/121 (28%), Positives = 54/121 (44%)
 Frame = +3

Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353
           H G+VT +   P     I +AS D T+ +W    D   + + Q   + HS  V+ +    
Sbjct: 186 HGGFVTYVDFHPS-GTCIAAASMDNTVKVW----DVRTHRLLQH-YQLHSAAVNALSFHP 239

Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533
            G + L+ S D TL++ DL  G       GH     +VAFS       SG  D+ + +W 
Sbjct: 240 SGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK 299

Query: 534 T 536
           +
Sbjct: 300 S 300


>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris]
          Length = 833

 Score =  111 bits (277), Expect = 2e-24
 Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 6/226 (2%)
 Frame = +3

Query: 171  GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335
            GH   VT +  +P   +++ SASRD+T+ +W          IP +       + H+  V 
Sbjct: 413  GHKDVVTSVQFSP-LGNLLASASRDRTVRLW----------IPDKRGKSSEFKAHTAPVR 461

Query: 336  DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515
             V  S+DGQF  + S D ++++W++           HT  V    FS D R IVS S DK
Sbjct: 462  SVDFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 521

Query: 516  TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692
            TIK+W+T    K  V + S S  + + V F+PN +   I S G D  VK+W++   KL  
Sbjct: 522  TIKIWDTTN--KQCVNNFSDSVGFANFVDFNPNGT--CIASAGSDHTVKIWDIRVNKLLQ 577

Query: 693  NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
            ++  H+G +N V+  P G+   +   DG   + DL EG+ +YTL G
Sbjct: 578  HYQVHSGGVNCVSFHPSGNYIITASSDGTLKILDLLEGRLIYTLQG 623



 Score =  108 bits (271), Expect = 8e-24
 Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
 Frame = +3

Query: 300  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479
            +R  +GH   ++ V  S  G+   + SWD  L LW+        R+VGH   V SV FS 
Sbjct: 366  ERYFKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSP 425

Query: 480  DNRQIVSGSRDKTIKLW-----------------------NTLGVCKYTVQDES------ 572
                + S SRD+T++LW                       +  G    T  ++       
Sbjct: 426  LGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWN 485

Query: 573  ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716
                        H+ WV C +FSP+    +IVSC  DK +K+W+  N +   N     G+
Sbjct: 486  MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGF 543

Query: 717  LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884
             N V  +P+G+  AS G D    +WD+   K   H     GG  +N + F P+  Y + A
Sbjct: 544  ANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGG--VNCVSFHPSGNYIITA 601

Query: 885  ATGPSIKIWD-LEGKII 932
            ++  ++KI D LEG++I
Sbjct: 602  SSDGTLKILDLLEGRLI 618



 Score = 95.5 bits (236), Expect = 9e-20
 Identities = 62/192 (32%), Positives = 95/192 (49%)
 Frame = +3

Query: 225  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
            + +AS DK+I +W + R    Y     +L  H+H+V     S DG+  +S S D T+++W
Sbjct: 472  LATASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 526

Query: 405  DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
            D T       F         V F+ +   I S   D T+K+W+ + V K     + HS  
Sbjct: 527  DTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWD-IRVNKLLQHYQVHSGG 585

Query: 585  VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764
            V+CV F P+ +   I++   D  +K+ +L   +L     GHTG + TV+ S  G L +SG
Sbjct: 586  VNCVSFHPSGN--YIITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSG 643

Query: 765  GKDGQAMLWDLN 800
            G D Q +LW  N
Sbjct: 644  GADTQVLLWRTN 655


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,294,427
Number of Sequences: 33732
Number of extensions: 1320341
Number of successful extensions: 7347
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5748
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4685962090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005275
         (1213 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006089.1| guanine nucleotide binding protein (G protein),...   602   e-172
Alignment   gi|XP_931937.1| PREDICTED: similar to Guanine nucleotide-bindin...   268   9e-72
Alignment   gi|XP_941915.1| PREDICTED: similar to Guanine nucleotide-bindin...   268   9e-72
Alignment   gi|NP_000421.1| platelet-activating factor acetylhydrolase, iso...   126   4e-29
Alignment   gi|NP_061942.2| WD repeat domain 5B [Homo sapiens]                   114   2e-25
Alignment   gi|NP_438172.1| WD repeat domain 5 [Homo sapiens]                    112   5e-25
Alignment   gi|NP_060058.1| WD repeat domain 5 [Homo sapiens]                    112   5e-25
Alignment   gi|NP_758440.1| WD repeat domain 51B [Homo sapiens]                  110   2e-24
Alignment   gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...   107   2e-23
Alignment   gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]        106   5e-23

>ref|NP_006089.1| guanine nucleotide binding protein (G protein), beta polypeptide
            2-like 1 [Homo sapiens]
          Length = 317

 Score =  602 bits (1552), Expect = e-172
 Identities = 288/289 (99%), Positives = 289/289 (100%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 181  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 241  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289


>ref|XP_931937.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) [Homo sapiens]
          Length = 162

 Score =  268 bits (684), Expect = 9e-72
 Identities = 125/142 (88%), Positives = 129/142 (90%)
 Frame = +3

Query: 576  SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755
            +EWVSCVRF PNSSNPI VSC WDKLVKVWNLANCKLKTNHIGHTGYLNTVT+SP+GSLC
Sbjct: 4    TEWVSCVRFLPNSSNPITVSCSWDKLVKVWNLANCKLKTNHIGHTGYLNTVTMSPNGSLC 63

Query: 756  ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 935
            ASGGKDGQAMLWDLNEGKHLY  DGG IIN LCFSPN YWLCAA GPSIKIWDL   IIV
Sbjct: 64   ASGGKDGQAMLWDLNEGKHLYMPDGGGIINTLCFSPNCYWLCAAMGPSIKIWDLGVNIIV 123

Query: 936  DELKQEVISTSSKAKPPQCTSL 1001
            DELKQEVIST SKA+PPQCTSL
Sbjct: 124  DELKQEVISTGSKAEPPQCTSL 145


>ref|XP_941915.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
            2-like 1 (Receptor of activated protein kinase C 1)
            (RACK1) (Receptor for activated C kinase) [Homo sapiens]
          Length = 162

 Score =  268 bits (684), Expect = 9e-72
 Identities = 125/142 (88%), Positives = 129/142 (90%)
 Frame = +3

Query: 576  SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755
            +EWVSCVRF PNSSNPI VSC WDKLVKVWNLANCKLKTNHIGHTGYLNTVT+SP+GSLC
Sbjct: 4    TEWVSCVRFLPNSSNPITVSCSWDKLVKVWNLANCKLKTNHIGHTGYLNTVTMSPNGSLC 63

Query: 756  ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 935
            ASGGKDGQAMLWDLNEGKHLY  DGG IIN LCFSPN YWLCAA GPSIKIWDL   IIV
Sbjct: 64   ASGGKDGQAMLWDLNEGKHLYMPDGGGIINTLCFSPNCYWLCAAMGPSIKIWDLGVNIIV 123

Query: 936  DELKQEVISTSSKAKPPQCTSL 1001
            DELKQEVIST SKA+PPQCTSL
Sbjct: 124  DELKQEVISTGSKAEPPQCTSL 145


>ref|NP_000421.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Homo sapiens]
          Length = 410

 Score =  126 bits (316), Expect = 4e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370



 Score =  100 bits (248), Expect = 3e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408


>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens]
          Length = 330

 Score =  114 bits (285), Expect = 2e-25
 Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 7/272 (2%)
 Frame = +3

Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332
           L+ TL GH   V+ +  +P   + + S+S D+ II+W         G  ++ L GH+  +
Sbjct: 33  LKCTLVGHTEAVSSVKFSPN-GEWLASSSADRLIIIWGAYD-----GKYEKTLYGHNLEI 86

Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512
           SDV  SSD    +S S D TL+LWD+ +G   +   GH+  V    F+  +  I+SGS D
Sbjct: 87  SDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFD 146

Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686
           +T+K+W    G C  T+   +HS+ VS V F  N S  +IVS  +D L ++W+ A+ + L
Sbjct: 147 ETVKIWEVKTGKCLKTL--SAHSDPVSAVHF--NCSGSLIVSGSYDGLCRIWDAASGQCL 202

Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851
           KT        ++ V  SP+G    +   D    LWD + G+ L T  G       I    
Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262

Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 947
             +  ++ +  +    + IW+L+ K IV +L+
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 294



 Score = 89.0 bits (219), Expect = 8e-18
 Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 4/217 (1%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH+ +V      P   ++I+S S D+T+ +W     E   G   + L  HS  VS V
Sbjct: 120 TLKGHSNYVFCCNFNPP-SNLIISGSFDETVKIW-----EVKTGKCLKTLSAHSDPVSAV 173

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518
             +  G   +SGS+DG  R+WD  +G   +  V      +S V FS + + I++ + D T
Sbjct: 174 HFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNT 233

Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           +KLW+ + G C  T     + ++     FS       IVS   D LV +WNL   ++   
Sbjct: 234 LKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 292

Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLN 800
             GHT  + +    P  +L AS     D    LW  N
Sbjct: 293 LQGHTDVVISAACHPTENLIASAALENDKTIKLWMSN 329


>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  112 bits (281), Expect = 5e-25
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%)
 Frame = +3

Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 37  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90

Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512
           SDV  SSD    +S S D TL++WD+++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150

Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851
           KT        ++ V  SP+G    +   D    LWD ++GK L T  G       I    
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968
             +  ++ +  +    + IW+L+ K IV +L+     VIST+
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308



 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH+ +V      PQ  ++I+S S D+++ +W     +   G   + L  HS  VS V
Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518
             + DG   +S S+DG  R+WD  +G   +  +      +S V FS + + I++ + D T
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237

Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           +KLW+ + G C  T     + ++     FS       IVS   D LV +WNL   ++   
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296

Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791
             GHT  + +    P  ++ AS     D    LW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330


>ref|NP_060058.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  112 bits (281), Expect = 5e-25
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%)
 Frame = +3

Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 37  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90

Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512
           SDV  SSD    +S S D TL++WD+++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150

Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851
           KT        ++ V  SP+G    +   D    LWD ++GK L T  G       I    
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968
             +  ++ +  +    + IW+L+ K IV +L+     VIST+
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308



 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH+ +V      PQ  ++I+S S D+++ +W     +   G   + L  HS  VS V
Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518
             + DG   +S S+DG  R+WD  +G   +  +      +S V FS + + I++ + D T
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237

Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           +KLW+ + G C  T     + ++     FS       IVS   D LV +WNL   ++   
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296

Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791
             GHT  + +    P  ++ AS     D    LW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330


>ref|NP_758440.1| WD repeat domain 51B [Homo sapiens]
          Length = 478

 Score =  110 bits (275), Expect = 2e-24
 Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 46/257 (17%)
 Frame = +3

Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479
           +R  +GH   ++ + +S +G+   + SWD  L LW+        R+VGH   V SV FS 
Sbjct: 11  ERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSP 70

Query: 480 DNRQIVSGSRDKTIKLW-----------------------NTLGVCKYTVQDES------ 572
               + S SRD+T++LW                       +  G    T  ++       
Sbjct: 71  HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWS 130

Query: 573 ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716
                       H+ WV C +FSP+    +IVSC  DK +K+W+  N +   N     G+
Sbjct: 131 MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGF 188

Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884
            N V  +P G+  AS G D    +WD+   K   H     GG  +N + F P+  Y + A
Sbjct: 189 ANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGG--VNCISFHPSGNYLITA 246

Query: 885 ATGPSIKIWD-LEGKII 932
           ++  ++KI D LEG++I
Sbjct: 247 SSDGTLKILDLLEGRLI 263



 Score =  109 bits (273), Expect = 4e-24
 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)
 Frame = +3

Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335
           GH   VT +  +P   +++ SASRD+T+ +W          IP +       + H+  V 
Sbjct: 58  GHKDVVTSVQFSPH-GNLLASASRDRTVRLW----------IPDKRGKFSEFKAHTAPVR 106

Query: 336 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515
            V  S+DGQF  + S D ++++W +           HT  V    FS D R IVS S DK
Sbjct: 107 SVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 166

Query: 516 TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692
           TIK+W+T    K  V + S S  + + V F+P  S   I S G D+ VKVW++   KL  
Sbjct: 167 TIKIWDTTN--KQCVNNFSDSVGFANFVDFNP--SGTCIASAGSDQTVKVWDVRVNKLLQ 222

Query: 693 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
           ++  H+G +N ++  P G+   +   DG   + DL EG+ +YTL G
Sbjct: 223 HYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG 268



 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 61/192 (31%), Positives = 95/192 (49%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + +AS DK+I +W + R    Y     +L  H+H+V     S DG+  +S S D T+++W
Sbjct: 117 LATASEDKSIKVWSMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           D T       F         V F+     I S   D+T+K+W+ + V K     + HS  
Sbjct: 172 DTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWD-VRVNKLLQHYQVHSGG 230

Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764
           V+C+ F P+ +   +++   D  +K+ +L   +L     GHTG + TV+ S  G L ASG
Sbjct: 231 VNCISFHPSGN--YLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASG 288

Query: 765 GKDGQAMLWDLN 800
           G D Q +LW  N
Sbjct: 289 GADTQVLLWRTN 300


>ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score =  107 bits (267), Expect = 2e-23
 Identities = 82/272 (30%), Positives = 123/272 (45%), Gaps = 7/272 (2%)
 Frame = +3

Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353
           H G V   A +P    M+L+ S D  +  W     ET  G     L GH+  V     S 
Sbjct: 20  HGGEVNSSAFSPD-GQMLLTGSEDGCVYGW-----ETRSGQLLWRLGGHTGPVKFCRFSP 73

Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533
           DG    S S D T+RLWD+      R   GH + V +V+FS D+RQ+ SG  DK + LW+
Sbjct: 74  DGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD 133

Query: 534 TLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--- 698
                + +  V    H + +    FSP  +   + +  WD  V++W+L       +H   
Sbjct: 134 VQSGQMLRLLV---GHRDSIQSSDFSPTVN--CLATGSWDSTVRIWDLRMVTPAVSHQAL 188

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYW 875
            GH+G ++ +  S  G L ASG  D    +W       L  L G    + ++ FSP+  W
Sbjct: 189 EGHSGNISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELW 247

Query: 876 LCAA-TGPSIKIWDLEGKIIVDELKQEVISTS 968
           L +A     +K+WD      ++ LKQ V+  +
Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVA 279



 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 4/227 (1%)
 Frame = +3

Query: 318 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 497
           H   V+    S DGQ  L+GS DG +  W+  +G    R  GHT  V    FS D     
Sbjct: 20  HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79

Query: 498 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 677
           S S D T++LW+        V  + H   V  V FSP+S    + S GWDK V +W++ +
Sbjct: 80  SASCDCTVRLWDVARAKCLRVL-KGHQRSVETVSFSPDSRQ--LASGGWDKRVMLWDVQS 136

Query: 678 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----EGKHLYTLDGGDIIN 845
            ++    +GH   + +   SP  +  A+G  D    +WDL        H         I+
Sbjct: 137 GQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNIS 196

Query: 846 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPP 986
            LC+S +      +   +I IW      ++ +LK  V    S A  P
Sbjct: 197 CLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
 Frame = +3

Query: 435 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 614
           F  H  +V S AFS D + +++GS D  +  W T    +   +   H+  V   RFSP+ 
Sbjct: 17  FGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRS-GQLLWRLGGHTGPVKFCRFSPDG 75

Query: 615 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 794
              +  S   D  V++W++A  K      GH   + TV+ SPD    ASGG D + MLWD
Sbjct: 76  H--LFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD 133

Query: 795 LNEGKHLYTLDG-GDIINALCFSPNRYWLCAATG---PSIKIWDL 917
           +  G+ L  L G  D I +  FSP     C ATG    +++IWDL
Sbjct: 134 VQSGQMLRLLVGHRDSIQSSDFSPTVN--CLATGSWDSTVRIWDL 176



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L+GH+G ++ +  +     ++ S S DKTI +WK T            L+GH  +V  + 
Sbjct: 188 LEGHSGNISCLCYSAS--GLLASGSWDKTIHIWKPTTSSLLI-----QLKGHVTWVKSIA 240

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKT 518
            S D  +  S  +   +++WD  TG           DV  + AF+ D + +VSG+ D+T
Sbjct: 241 FSPDELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQT 299


>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
          Length = 415

 Score =  106 bits (264), Expect = 5e-23
 Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 1/224 (0%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           T +GH   +  ++  PQ   ++ + S D T  +W +   E  Y      LRGHS  +  +
Sbjct: 172 TFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQNGEEVY-----TLRGHSAEIISL 225

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
             ++ G   ++GS+D T+ +WD  TG      +GH  ++ S +F+ D   I++GS DKT 
Sbjct: 226 SFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTC 285

Query: 522 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698
           KLW+ T G C  T+         SC  +    +  +I +   D   ++++ A  K     
Sbjct: 286 KLWDATNGKCVATLTGHDDEILDSCFDY----TGKLIATASADGTARIFSAATRKCIAKL 341

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830
            GH G ++ ++ +P G+   +G  D  A +WD   G+ L  L+G
Sbjct: 342 EGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385



 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 2/226 (0%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           LK H   +T +A         ++ S D+T  +W     +T  G     L GH + V  + 
Sbjct: 88  LKAHILPLTNVALNKS-GSCFITGSYDRTCKLW-----DTASGEELNTLEGHRNVVYAIA 141

Query: 345 ISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            ++  G    +GS+D T +LW + TG     F GHT +++ ++F+  +  + +GS D T 
Sbjct: 142 FNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA 201

Query: 522 KLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698
           KLW+   G   YT++  S       +  S N+S   I++  +D  V VW+    +     
Sbjct: 202 KLWDIQNGEEVYTLRGHS----AEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNIL 257

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 836
           IGH   +++ + + D SL  +G  D    LWD   GK + TL G D
Sbjct: 258 IGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHD 303



 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 10/253 (3%)
 Frame = +3

Query: 186 VTQIATTPQFPDMILSASRDKTI------IMWKLTRDETNYGIPQRALRGHSHFVSDVVI 347
           V+ +    Q  + +L+ASR + +      +  KL ++  +     + L+ H   +++V +
Sbjct: 41  VSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNHTFYLFKVLKAHILPLTNVAL 100

Query: 348 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIK 524
           +  G   ++GS+D T +LWD  +G       GH   V ++AF++    +I +GS DKT K
Sbjct: 101 NKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCK 160

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           LW+   G C +T +   H+  + C+ F+P S+  ++ +   D   K+W++ N +      
Sbjct: 161 LWSVETGKCYHTFR--GHTAEIVCLSFNPQST--LVATGSMDTTAKLWDIQNGEEVYTLR 216

Query: 702 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYW 875
           GH+  + +++ +  G    +G  D   ++WD + G+ +  L G   +I +A         
Sbjct: 217 GHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLI 276

Query: 876 LCAATGPSIKIWD 914
           L  +   + K+WD
Sbjct: 277 LTGSMDKTCKLWD 289



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 26/74 (35%), Positives = 41/74 (55%)
 Frame = +3

Query: 309 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488
           L GH   +S +  +  G   L+GS D T R+WD  TG   +   GHT ++ S AF+    
Sbjct: 341 LEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGN 400

Query: 489 QIVSGSRDKTIKLW 530
            +++GS+D T ++W
Sbjct: 401 IVITGSKDNTCRIW 414


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,829,927
Number of Sequences: 39411
Number of extensions: 1323073
Number of successful extensions: 6631
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5330
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 4089062705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005275
         (1213 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032169.1| guanine nucleotide binding protein (G protein),...   602   e-172
Alignment   gi|NP_082016.1| WD repeat domain 51B [Mus musculus]                  126   4e-29
Alignment   gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso...   126   5e-29
Alignment   gi|NP_543124.1| WD repeat domain 5 [Mus musculus]                    112   6e-25
Alignment   gi|NP_081389.1| WD repeat domain 5B [Mus musculus]                   112   8e-25
Alignment   gi|XP_987745.1| PREDICTED: similar to platelet-activating facto...   110   3e-24
Alignment   gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]         109   7e-24
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate...   104   2e-22
Alignment   gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei...   104   2e-22
Alignment   gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ...   103   5e-22

>ref|NP_032169.1| guanine nucleotide binding protein (G protein), beta polypeptide 2
            like 1 [Mus musculus]
          Length = 317

 Score =  602 bits (1552), Expect = e-172
 Identities = 288/289 (99%), Positives = 289/289 (100%)
 Frame = +3

Query: 135  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314
            MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
Sbjct: 1    MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60

Query: 315  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
            GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
Sbjct: 61   GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120

Query: 495  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
            VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
Sbjct: 121  VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180

Query: 675  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854
            NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
Sbjct: 181  NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240

Query: 855  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001
            FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL
Sbjct: 241  FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289


>ref|NP_082016.1| WD repeat domain 51B [Mus musculus]
          Length = 476

 Score =  126 bits (317), Expect = 4e-29
 Identities = 85/269 (31%), Positives = 128/269 (47%), Gaps = 5/269 (1%)
 Frame = +3

Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320
           E   L  + KGH   +T    +P     I +AS D  +++W L      Y        GH
Sbjct: 6   EDPILERSFKGHKAAITSADFSPNCKQ-IATASWDTFLMLWSLKPHARAYRYV-----GH 59

Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500
              V+ +  S  G    S S D T+RLW L     +  F  HT  V SV FS+D + +V+
Sbjct: 60  KDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVT 119

Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680
            S DK+IK+W+     ++      H+ WV C +FSP+    +IVSC  DK +K+W+  N 
Sbjct: 120 ASEDKSIKVWSMFRQ-RFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNK 176

Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINAL 851
           +   N     G+ N V  +P+G+  AS G D    +WD+   K   H      G  +N L
Sbjct: 177 QCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG--VNCL 234

Query: 852 CFSP-NRYWLCAATGPSIKIWDL-EGKII 932
            F P     + A++  ++K+ DL EG++I
Sbjct: 235 SFHPLGNSLVTASSDGTVKMLDLIEGRLI 263



 Score = 99.0 bits (245), Expect = 9e-21
 Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 43/253 (16%)
 Frame = +3

Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350
           GH   VT +  +PQ  +++ SASRD+T+ +W L R   +        + H+  V  V  S
Sbjct: 58  GHKDVVTSLQFSPQ-GNLLASASRDRTVRLWVLDRKGKS-----SEFKAHTAPVRSVDFS 111

Query: 351 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 530
           +DGQ  ++ S D ++++W +           HT  V    FS D R IVS S DKTIK+W
Sbjct: 112 ADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171

Query: 531 NTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-- 701
           +T    K  V + S S  + + V F+PN +   I S G D  VK+W++   KL  ++   
Sbjct: 172 DTTN--KQCVNNFSDSVGFANFVDFNPNGT--CIASAGSDHAVKIWDIRMNKLLQHYQVH 227

Query: 702 ----------------------------------------GHTGYLNTVTVSPDGSLCAS 761
                                                   GHTG + TV+ S DG L  S
Sbjct: 228 SCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTS 287

Query: 762 GGKDGQAMLWDLN 800
           GG D Q ++W  N
Sbjct: 288 GGADAQVLIWRTN 300


>ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1
           subunit [Mus musculus]
          Length = 410

 Score =  126 bits (316), Expect = 5e-29
 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L GH   VT++   P F  M+ SAS D TI +W     +   G  +R L+GH+  V D+ 
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524
               G+   S S D T++LWD       R   GH  +V SVA   +   IVS SRDKTIK
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701
           +W    G C  T     H EWV  VR  PN    +I SC  D+ V+VW +A  + K    
Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821
            H   +  ++ +P+                    G    SG +D    +WD++ G  L T
Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
           L G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370



 Score =  100 bits (248), Expect = 4e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408


>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
          Length = 334

 Score =  112 bits (281), Expect = 6e-25
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%)
 Frame = +3

Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 37  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90

Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512
           SDV  SSD    +S S D TL++WD+++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150

Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851
           KT        ++ V  SP+G    +   D    LWD ++GK L T  G       I    
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968
             +  ++ +  +    + IW+L+ K IV +L+     VIST+
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308



 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH+ +V      PQ  ++I+S S D+++ +W     +   G   + L  HS  VS V
Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518
             + DG   +S S+DG  R+WD  +G   +  +      +S V FS + + I++ + D T
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237

Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           +KLW+ + G C  T     + ++     FS       IVS   D LV +WNL   ++   
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296

Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791
             GHT  + +    P  ++ AS     D    LW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330


>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
          Length = 328

 Score =  112 bits (280), Expect = 8e-25
 Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 7/272 (2%)
 Frame = +3

Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332
           LR TL GH+  ++ +  +P   + + S++ D  II+W         G  ++ L GHS  +
Sbjct: 31  LRLTLAGHSAAISSVKFSPN-GEWLASSAADALIIIWGAYD-----GNCKKTLYGHSLEI 84

Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512
           SDV  SSD    +S S D TL++WD+ +G   +   GH+  V    F+  +  IVSGS D
Sbjct: 85  SDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFD 144

Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686
           +++K+W    G C  T+   +HS+ +S V F+ N S  +IVS  +D L ++W+ A+ + L
Sbjct: 145 ESVKIWEVKTGKCLKTL--SAHSDPISAVNFNCNGS--LIVSGSYDGLCRIWDAASGQCL 200

Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS-- 860
           +T        ++ V  SP+G    +   D    LWD + G+ L T  G        F+  
Sbjct: 201 RTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASF 260

Query: 861 --PNRYWLCAATGPS-IKIWDLEGKIIVDELK 947
               R W+ + +  + + IW+L+ K IV  L+
Sbjct: 261 SVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQ 292



 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 2/202 (0%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH+ +V      P   ++I+S S D+++ +W     E   G   + L  HS  +S V
Sbjct: 118 TLKGHSDFVFCCDFNPP-SNLIVSGSFDESVKIW-----EVKTGKCLKTLSAHSDPISAV 171

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518
             + +G   +SGS+DG  R+WD  +G   R         +S V FS + + I++ + D T
Sbjct: 172 NFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNT 231

Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           +KLW+ + G C  T     + ++     FS  +    +VS   D +V +WNL   ++   
Sbjct: 232 LKLWDYSRGRCLKTYTGHKNEKYCLFASFSV-TGRKWVVSGSEDNMVYIWNLQTKEIVQR 290

Query: 696 HIGHTGYLNTVTVSPDGSLCAS 761
             GHT  + +    P  ++ AS
Sbjct: 291 LQGHTDVVISAACHPTKNIIAS 312


>ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit [Mus musculus]
          Length = 312

 Score =  110 bits (275), Expect = 3e-24
 Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
 Frame = +3

Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479
           +R L+GH+  V D+     G+   S S D T++LWD       R   GH  +V SVA   
Sbjct: 45  ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMP 104

Query: 480 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 656
           +   IVS SRDKTIK+W    G C  T     H EWV  VR  PN    +I SC  D+ V
Sbjct: 105 NGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTV 160

Query: 657 KVWNLANCKLKTNHIGHTGYLNTVTVSPD--------------------GSLCASGGKDG 776
           +VW +A  + K     H   +  ++ +P+                    G    SG +D 
Sbjct: 161 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 220

Query: 777 QAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926
              +WD++ G  L TL G D  +   L  S  ++ L  A   ++++WD + K
Sbjct: 221 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 272



 Score =  100 bits (248), Expect = 4e-21
 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
 Frame = +3

Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
           TLKGH   V  I+       ++ S S D TI +W     E       R + GH H VS V
Sbjct: 47  TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 100

Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
            I  +G   +S S D T+++W++ TG   + F GH + V  V  + D   I S S D+T+
Sbjct: 101 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 160

Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644
           ++W      CK  +++  H   V C+ ++P SS                   P ++S   
Sbjct: 161 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 218

Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824
           DK +K+W+++        +GH  ++  V     G    S   D    +WD    + + TL
Sbjct: 219 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 278

Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914
           +  +  + +L F     Y +  +   ++K+W+
Sbjct: 279 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 310


>ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]
          Length = 303

 Score =  109 bits (272), Expect = 7e-24
 Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 4/247 (1%)
 Frame = +3

Query: 138 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 317
           T+   L   L GH G V     +P    +I S+S D +I +W + R +  +      L+G
Sbjct: 55  TKSGRLLWRLAGHRGPVKSCCFSPD-GRLIASSSSDHSIRLWDVARSKCLH-----VLKG 108

Query: 318 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 497
           H   V  V  S D +   SG WD    +W++ +G      VGH   + S  FS  +  + 
Sbjct: 109 HQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLA 168

Query: 498 SGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668
           +GS D T+ +W+   +  V  Y    E H+  +SC+ +S +    ++ S  WDK + VW 
Sbjct: 169 TGSWDSTVHIWDLRASTPVVSYH-NLEGHTGNISCLCYSASG---LLASGSWDKTICVWK 224

Query: 669 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN 845
                L     GHT ++N++  SPD    AS G      +WD   GK L TL G  D+ +
Sbjct: 225 PTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAH 284

Query: 846 ALCFSPN 866
           A  F+P+
Sbjct: 285 ACIFTPD 291



 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 6/259 (2%)
 Frame = +3

Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353
           H+G V   A +P     +L+AS D  + +W      T  G     L GH   V     S 
Sbjct: 25  HHGEVNCSAFSPD-GRTLLTASDDGCVYVWG-----TKSGRLLWRLAGHRGPVKSCCFSP 78

Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533
           DG+   S S D ++RLWD+          GH + V +V+FS D++Q+ SG  DK   +W 
Sbjct: 79  DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE 138

Query: 534 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNH--IG 704
                +  +    H + +    FSP S +  + +  WD  V +W+L A+  + + H   G
Sbjct: 139 VQSGRRVHLL-VGHCDSIQSSDFSPTSDS--LATGSWDSTVHIWDLRASTPVVSYHNLEG 195

Query: 705 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLC 881
           HTG ++ +  S  G L ASG  D    +W          L G  I +N+L FSP+   L 
Sbjct: 196 HTGNISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLA 254

Query: 882 AA-TGPSIKIWD-LEGKII 932
           +A    ++K+WD L GK +
Sbjct: 255 SAGYSRTVKVWDCLTGKCL 273



 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 3/203 (1%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           LKGH   V  ++ +P     + S   DK  I+W     E   G     L GH   +    
Sbjct: 106 LKGHQRSVETVSFSPD-SKQLASGGWDKRAIVW-----EVQSGRRVHLLVGHCDSIQSSD 159

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515
            S       +GSWD T+ +WDL   T         GHT ++  + +S+    + SGS DK
Sbjct: 160 FSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGL-LASGSWDK 218

Query: 516 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695
           TI +W         +Q + H+ WV+ + FSP+     + S G+ + VKVW+    K    
Sbjct: 219 TICVWKPT-TNNLPLQLKGHTIWVNSLAFSPDELK--LASAGYSRTVKVWDCLTGKCLET 275

Query: 696 HIGHTGYLNTVTVSPDGSLCASG 764
             G     +    +PDG L  SG
Sbjct: 276 LKGMLDVAHACIFTPDGKLLVSG 298



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 32/114 (28%), Positives = 57/114 (50%)
 Frame = +3

Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344
           L+GH G ++ +  +     ++ S S DKTI +WK T +     +P + L+GH+ +V+ + 
Sbjct: 193 LEGHTGNISCLCYSAS--GLLASGSWDKTICVWKPTTNN----LPLQ-LKGHTIWVNSLA 245

Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 506
            S D     S  +  T+++WD  TG       G      +  F+ D + +VSG+
Sbjct: 246 FSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPDGKLLVSGA 299


>ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor
           (PCAF)-associated factor [Mus musculus]
          Length = 589

 Score =  104 bits (259), Expect = 2e-22
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 2/216 (0%)
 Frame = +3

Query: 276 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 455
           +E N G   + LRGH   V      +D    LS S D ++R WDL + T T  + GH   
Sbjct: 327 EEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYP 386

Query: 456 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 635
           V  V  S  +    SGS D+T +LW+        +    H   V CV+F PNS+   + +
Sbjct: 387 VWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIY-AGHLADVDCVKFHPNSN--YLAT 443

Query: 636 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 815
              DK V++W+           GH G + +++ SP+G   AS G+D +  LWDL  G   
Sbjct: 444 GSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLF 503

Query: 816 YTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDL 917
             L G  D I +L FSP+   + +A+   S+++WD+
Sbjct: 504 KELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539



 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 54/184 (29%), Positives = 86/184 (46%)
 Frame = +3

Query: 168 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 347
           +GH   V  +  +P F     S S D+T  +W   R       P R   GH   V  V  
Sbjct: 381 QGHAYPVWDVDISP-FSLYFASGSHDRTARLWSFDRT-----YPLRIYAGHLADVDCVKF 434

Query: 348 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 527
             +  +  +GS D T+RLW    G + R F GH   VLS++FS + + + S   D+ +KL
Sbjct: 435 HPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKL 494

Query: 528 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 707
           W+      +  +   H++ ++ + FSP+S   +I S   D  V+VW++ +    T   G 
Sbjct: 495 WDLASGTLFK-ELRGHTDSITSLAFSPDSG--LIASASMDNSVRVWDIRSTCCNTPADGS 551

Query: 708 TGYL 719
           +G L
Sbjct: 552 SGEL 555



 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 3/194 (1%)
 Frame = +3

Query: 414 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 593
           TGT  +   GH   V S  F +D+  ++S S D +I+ W+ LG    TV  + H+  V  
Sbjct: 331 TGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWD-LGSFTNTVLYQGHAYPVWD 389

Query: 594 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 773
           V  SP S      S   D+  ++W+         + GH   ++ V   P+ +  A+G  D
Sbjct: 390 VDISPFSL--YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTD 447

Query: 774 GQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDEL 944
               LW   +G    L+T   G +++ L FSPN +Y   A     +K+WDL    +  EL
Sbjct: 448 KTVRLWSAQQGNSVRLFTGHRGPVLS-LSFSPNGKYLASAGEDQRLKLWDLASGTLFKEL 506

Query: 945 KQEVISTSSKAKPP 986
           +    S +S A  P
Sbjct: 507 RGHTDSITSLAFSP 520



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 40/121 (33%), Positives = 60/121 (49%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + + S DKT+ +W   +     G   R   GH   V  +  S +G++  S   D  L+LW
Sbjct: 441 LATGSTDKTVRLWSAQQ-----GNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLW 495

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584
           DL +GT  +   GHT  + S+AFS D+  I S S D ++++W+    C  T  D S  E 
Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGEL 555

Query: 585 V 587
           V
Sbjct: 556 V 556


>ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated
            factor, 100kDa [Mus musculus]
          Length = 801

 Score =  104 bits (259), Expect = 2e-22
 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
 Frame = +3

Query: 303  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482
            + L GHS  V     S D  + LS S DGT+RLW L T T    + GH   V    FS  
Sbjct: 538  KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 597

Query: 483  NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662
                VSG  D+  +LW T       +    H   V+C RF PNS+   + +   D+ V++
Sbjct: 598  GYYFVSGGHDRVARLWATDHYQPLRI-FAGHLADVNCTRFHPNSN--YVATGSADRTVRL 654

Query: 663  WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839
            W++ N        GH G ++++T SP+G   A+G  DG+ +LWD+  G  +  L G  D 
Sbjct: 655  WDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDT 714

Query: 840  INALCFSPNRYWLCAAT-GPSIKIWD 914
            + +L FS +   L + +   ++++WD
Sbjct: 715  VCSLRFSRDGEILASGSMDNTVRLWD 740



 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 3/245 (1%)
 Frame = +3

Query: 222  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 401
            +I     D T+ +W +T        P++        +  V  +SD       S D   R+
Sbjct: 485  LIAGGFADSTVRVWSVT--------PKK--------LRSVKQASDLSLIDKESDDVLERI 528

Query: 402  WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 581
             D  T +  +   GH+  V   +FS D   ++S S D T++LW +L      V  + H+ 
Sbjct: 529  MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW-SLQTFTCLVGYKGHNY 587

Query: 582  WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 761
             V   +FSP       VS G D++ ++W   + +      GH   +N     P+ +  A+
Sbjct: 588  PVWDTQFSPYGY--YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVAT 645

Query: 762  GGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKII 932
            G  D    LWD+  G    ++T   G  I++L FSPN R+    AT   + +WD+   ++
Sbjct: 646  GSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLM 704

Query: 933  VDELK 947
            V ELK
Sbjct: 705  VGELK 709



 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
 Frame = +3

Query: 168  KGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341
            KGHN   W TQ +    +    +S   D+   +W      T++  P R   GH   V+  
Sbjct: 583  KGHNYPVWDTQFSPYGYY---FVSGGHDRVARLWA-----TDHYQPLRIFAGHLADVNCT 634

Query: 342  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521
                +  +  +GS D T+RLWD+  G   R F GH   + S+ FS + R + +G+ D  +
Sbjct: 635  RFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 694

Query: 522  KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668
             LW+ +G      + + H++ V  +RFS +    I+ S   D  V++W+
Sbjct: 695  LLWD-IGHGLMVGELKGHTDTVCSLRFSRDGE--ILASGSMDNTVRLWD 740



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 33/105 (31%), Positives = 53/105 (50%)
 Frame = +3

Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404
           + + S D+T+ +W +       G   R   GH   +  +  S +G+F  +G+ DG + LW
Sbjct: 643 VATGSADRTVRLWDVLN-----GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 697

Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 539
           D+  G       GHT  V S+ FS D   + SGS D T++LW+ +
Sbjct: 698 DIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAV 742


>ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus]
          Length = 658

 Score =  103 bits (256), Expect = 5e-22
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 2/207 (0%)
 Frame = +3

Query: 306 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 485
           +L GH+  V  V +++  +  ++GS  G++R+WDL      R  +GH  ++ S+ F    
Sbjct: 58  SLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYG 117

Query: 486 RQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662
             + SGS+D  IKLW+     C +  +   HS+ V C+RFSP+     + S   D  VK+
Sbjct: 118 EFVASGSQDTNIKLWDIRRKGCVFRYR--GHSQAVRCLRFSPDGK--WLASAADDHTVKL 173

Query: 663 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839
           W+L   K+ +   GHTG +N V   P+  L ASG  D     WDL + + +  ++G    
Sbjct: 174 WDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGP 233

Query: 840 INALCFSPNRYWLCAATGPSIKIWDLE 920
           + ++ F+P+   L +    S++++  E
Sbjct: 234 VRSVLFNPDGCCLYSGCQDSLRVYGWE 260



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
 Frame = +3

Query: 162 TLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 338
           +L GH   V  +   TP+  ++I++ S+  +I +W L   +       R L GH   +  
Sbjct: 58  SLTGHTSPVESVRLNTPE--ELIVAGSQSGSIRVWDLEAAKI-----LRTLMGHKANICS 110

Query: 339 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 518
           +     G+F  SGS D  ++LWD+       R+ GH++ V  + FS D + + S + D T
Sbjct: 111 LDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHT 170

Query: 519 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698
           +KLW+ L   K   +   H+  V+ V F PN    ++ S   D+ ++ W+L   ++ +  
Sbjct: 171 VKLWD-LTAGKMMSEFPGHTGPVNVVEFHPNEY--LLASGSSDRTIRFWDLEKFQVVSCI 227

Query: 699 IGHTGYLNTVTVSPDGSLCASGGKD 773
            G  G + +V  +PDG    SG +D
Sbjct: 228 EGEPGPVRSVLFNPDGCCLYSGCQD 252



 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 3/215 (1%)
 Frame = +3

Query: 318 HSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494
           H+  VS +V+  + G+   +G  D  + LW +          GHT  V SV  ++    I
Sbjct: 19  HASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELI 78

Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674
           V+GS+  +I++W+ L   K       H   +  + F P      + S   D  +K+W++ 
Sbjct: 79  VAGSQSGSIRVWD-LEAAKILRTLMGHKANICSLDFHPYGE--FVASGSQDTNIKLWDIR 135

Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL 851
                  + GH+  +  +  SPDG   AS   D    LWDL  GK +    G    +N +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 852 CFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQE 953
            F PN Y L + +   +I+ WDLE   +V  ++ E
Sbjct: 196 EFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGE 230


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,520,842
Number of Sequences: 45328
Number of extensions: 1523344
Number of successful extensions: 7626
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6342
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5038342749
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)