BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-005275 (1213 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 602 e-174 Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 125 3e-30 Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 62 4e-11 >ref|NP_999497.1| G-beta like protein [Sus scrofa] Length = 317 Score = 602 bits (1552), Expect = e-174 Identities = 288/289 (99%), Positives = 289/289 (100%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289 >ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus scrofa] Length = 410 Score = 125 bits (313), Expect = 3e-30 Identities = 88/277 (31%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS +RDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 Score = 99.0 bits (245), Expect = 2e-22 Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S + D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 >ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa] Length = 493 Score = 61.6 bits (148), Expect = 4e-11 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 8/219 (3%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L+GH V +A D + S SRD+ I+ + +R L+GH V + Sbjct: 267 LEGHTARVGALAWNA---DQLSSGSRDRMILQRDIRTPPLQ---SERRLQGHRQEVCGLK 320 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDK 515 S+D Q SG D L +W+ ++ + +++ H V ++A+S +++ G+ D+ Sbjct: 321 WSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADR 380 Query: 516 TIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANC 680 I+ WNTL C T + W +N ++ + G+ + + VW + Sbjct: 381 CIRFWNTLTGQPLQCIDTGSQVCNLAW-------SKHANELVSTHGYSQNQILVWKYPSL 433 Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 797 GH+ + + +SPDG +G D W++ Sbjct: 434 TQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472 Score = 54.7 bits (130), Expect = 4e-09 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 10/239 (4%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 +LS + +W + + ++ G S V+ V S G G+ G +++W Sbjct: 200 VLSVGLGTCVYLWSACTSQVTR-LCDLSVEGDS--VTSVGWSERGNLVAVGTHKGFVQIW 256 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE----S 572 D G GHT V ++A+++D Q+ SGSRD+ I + +Q E Sbjct: 257 DAAAGKKLSMLEGHTARVGALAWNAD--QLSSGSRDRMIL---QRDIRTPPLQSERRLQG 311 Query: 573 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGS 749 H + V +++S + + ++ S G D + VWN ++ + H + + SP Sbjct: 312 HRQEVCGLKWS--TDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHG 369 Query: 750 LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS---IKIW 911 L ASGG D W+ G+ L +D G + L +S + L + G S I +W Sbjct: 370 LLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVW 428 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,114,660 Number of Sequences: 1040 Number of extensions: 29776 Number of successful extensions: 125 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 114197040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-005275 (1213 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_786996.1| guanine nucleotide binding protein (G protein),... 602 e-172 Alignment gi|XP_589608.2| PREDICTED: similar to Guanine nucleotide-bindin... 357 1e-98 Alignment gi|XP_881436.1| PREDICTED: similar to Guanine nucleotide-bindin... 164 2e-40 Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso... 126 4e-29 Alignment gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos... 113 3e-25 Alignment gi|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase ... 107 2e-23 Alignment gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [... 104 2e-22 Alignment gi|NP_001033649.1| WD repeat domain 51A [Bos taurus] 102 6e-22 Alignment gi|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase ... 102 8e-22 Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 101 1e-21 >ref|NP_786996.1| guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 [Bos taurus] Length = 317 Score = 602 bits (1552), Expect = e-172 Identities = 288/289 (99%), Positives = 289/289 (100%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289 >ref|XP_589608.2| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 1 [Bos taurus] Length = 228 Score = 357 bits (916), Expect = 1e-98 Identities = 167/170 (98%), Positives = 169/170 (99%) Frame = +3 Query: 492 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 671 I+S SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL Sbjct: 31 ILSASRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 90 Query: 672 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 851 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL Sbjct: 91 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 150 Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 151 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 200 Score = 124 bits (310), Expect = 2e-28 Identities = 85/233 (36%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI +W T Y + + Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIKLWN-TLGVCKYTVQDES-- 57 Query: 315 GHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488 HS +VS V S S +S WD +++W+L +GHT + +V S D Sbjct: 58 -HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 116 Query: 489 QIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPN------SSNPIIVSCGWD 647 SG +D LW+ G YT+ + ++ + FSPN ++ P I + Sbjct: 117 LCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLE 173 Query: 648 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 806 + V L + T+ ++ S DG +G D +W + G Sbjct: 174 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 226 >ref|XP_881436.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 2 [Bos taurus] Length = 126 Score = 164 bits (414), Expect = 2e-40 Identities = 76/78 (97%), Positives = 78/78 (100%) Frame = +3 Query: 768 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 947 +DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK Sbjct: 21 QDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 80 Query: 948 QEVISTSSKAKPPQCTSL 1001 QEVISTSSKA+PPQCTSL Sbjct: 81 QEVISTSSKAEPPQCTSL 98 >ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) [Bos taurus] Length = 410 Score = 126 bits (316), Expect = 4e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVEDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 Score = 100 bits (248), Expect = 3e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVEDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 >ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus] Length = 495 Score = 113 bits (283), Expect = 3e-25 Identities = 78/257 (30%), Positives = 117/257 (45%), Gaps = 46/257 (17%) Frame = +3 Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479 +R +GH ++ V S +G+ +GSWD L LW L R+VGH + SV FS Sbjct: 28 ERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSP 87 Query: 480 DNRQIVSGSRDKTIKLW-------------NTLGV-----------CKYTVQDES----- 572 + S SRD+TI+LW +T V +D+S Sbjct: 88 LGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWN 147 Query: 573 ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716 H+ WV C +FSP+ +IVSC DK +K+W+ N + N G+ Sbjct: 148 MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDFVGF 205 Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884 N V +P+G+ AS G D +WD+ K H GG +N + F P+ Y + A Sbjct: 206 ANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGG--VNCVSFHPSGNYLITA 263 Query: 885 ATGPSIKIWD-LEGKII 932 ++ ++KI D LEG++I Sbjct: 264 SSDGTLKILDLLEGRLI 280 Score = 110 bits (275), Expect = 2e-24 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335 GH +T + +P +++ SASRD+TI +W IP + + H+ V Sbjct: 75 GHKDVITSVQFSP-LGNLLASASRDRTIRLW----------IPDKRGKSSEFKAHTAPVR 123 Query: 336 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515 V S+DGQF S S D ++++W++ HT V FS D R IVS S DK Sbjct: 124 SVDFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 183 Query: 516 TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692 TIK+W+T K V + S + + V F+PN + I S G D VK+W++ KL Sbjct: 184 TIKIWDTTN--KQCVNNFSDFVGFANFVAFNPNGT--CIASAGSDHTVKIWDIRVNKLLQ 239 Query: 693 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 ++ H+G +N V+ P G+ + DG + DL EG+ +YTL G Sbjct: 240 HYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG 285 Score = 98.6 bits (244), Expect = 9e-21 Identities = 63/192 (32%), Positives = 95/192 (49%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + SAS DK+I +W + R Y +L H+H+V S DG+ +S S D T+++W Sbjct: 134 LASASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 188 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 D T F VAF+ + I S D T+K+W+ + V K + HS Sbjct: 189 DTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWD-IRVNKLLQHYQVHSGG 247 Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764 V+CV F P+ + +++ D +K+ +L +L GHTG + TV+ S G L SG Sbjct: 248 VNCVSFHPSGN--YLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSG 305 Query: 765 GKDGQAMLWDLN 800 G D Q +LW N Sbjct: 306 GADAQVLLWRTN 317 >ref|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) [Bos taurus] Length = 600 Score = 107 bits (267), Expect = 2e-23 Identities = 79/230 (34%), Positives = 109/230 (47%), Gaps = 3/230 (1%) Frame = +3 Query: 150 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 329 T R L GH G V P +LS S D +I W L TN + Q GH++ Sbjct: 344 TERKVLLGHCGPVYSTRFLPD-SSALLSCSEDTSIRYWDL-ESFTNTVLYQ----GHAYP 397 Query: 330 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 509 V D+ IS F S S+D T RLW R + GH V V F ++ + +GS Sbjct: 398 VWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGST 457 Query: 510 DKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680 DKT++LW+ V +T H V C+ FSPN +VS G D+L+K+W+LA+ Sbjct: 458 DKTVRLWSAQQGNSVRLFT----GHCGPVRCLAFSPNGQ--YLVSAGEDQLLKLWDLASG 511 Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 L + GHT + +VT S D S+ AS D +WD+ + DG Sbjct: 512 TLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKSKHNSTPADG 561 Score = 87.8 bits (216), Expect = 2e-17 Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 2/219 (0%) Frame = +3 Query: 276 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 455 +E ++ L GH V D LS S D ++R WDL + T T + GH Sbjct: 338 EEDRTATERKVLLGHCGPVYSTRFLPDSSALLSCSEDTSIRYWDLESFTNTVLYQGHAYP 397 Query: 456 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 635 V + S + S S D T +LW+ + H V CV+F PNS+ + + Sbjct: 398 VWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIY-AGHLAGVDCVKFHPNSN--YLAT 454 Query: 636 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 815 DK V++W+ GH G + + SP+G S G+D LWDL G Sbjct: 455 GSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLY 514 Query: 816 YTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGK 926 L G D I ++ FS + + +A+ S++IWD++ K Sbjct: 515 KDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKSK 553 Score = 76.3 bits (186), Expect = 5e-14 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Frame = +3 Query: 231 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 410 SAS D T +W R P R GH V V + + +GS D T+RLW Sbjct: 412 SASYDHTARLWSFDRT-----YPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSA 466 Query: 411 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 590 G + R F GH V +AFS + + +VS D+ +KLW+ Y H++ ++ Sbjct: 467 QQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYK-DLHGHTDDIT 525 Query: 591 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG--------HTGYLNTV 728 V FS +SS +I S D V++W++ + T G +TG ++TV Sbjct: 526 SVTFSLDSS--VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTV 577 Score = 73.6 bits (179), Expect = 3e-13 Identities = 45/137 (32%), Positives = 66/137 (48%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350 GH V + P + + + S DKT+ +W + G R GH V + S Sbjct: 435 GHLAGVDCVKFHPN-SNYLATGSTDKTVRLWSAQQ-----GNSVRLFTGHCGPVRCLAFS 488 Query: 351 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 530 +GQ+ +S D L+LWDL +GT + GHT D+ SV FS D+ I S S D ++++W Sbjct: 489 PNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIW 548 Query: 531 NTLGVCKYTVQDESHSE 581 + T D S SE Sbjct: 549 DIKSKHNSTPADGSSSE 565 >ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus] Length = 800 Score = 104 bits (259), Expect = 2e-22 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Frame = +3 Query: 303 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482 + L GHS V S D + LS S DGT+RLW L T T + GH V FS Sbjct: 537 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596 Query: 483 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662 VSG D+ +LW T + H V+C RF PNS+ + + D+ V++ Sbjct: 597 GYYFVSGGHDRVARLWATDHYQPLRI-FAGHLADVNCTRFHPNSN--YVATGSADRTVRL 653 Query: 663 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839 W++ N GH G ++++T SP+G A+G DG+ +LWD+ G + L G D Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDT 713 Query: 840 INALCFSPNRYWLCAAT-GPSIKIWD 914 + +L FS + L + + ++++WD Sbjct: 714 VCSLRFSRDGEILASGSMDNTVRLWD 739 Score = 76.6 bits (187), Expect = 4e-14 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 3/187 (1%) Frame = +3 Query: 396 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 575 R+ D T + + GH+ V +FS D ++S S D T++LW +L V + H Sbjct: 526 RIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW-SLQTFTCLVGYKGH 584 Query: 576 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755 + V +FSP VS G D++ ++W + + GH +N P+ + Sbjct: 585 NYPVWDTQFSPYGY--YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYV 642 Query: 756 ASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGK 926 A+G D LWD+ G ++T G I++L FSPN R+ AT + +WD+ Sbjct: 643 ATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHG 701 Query: 927 IIVDELK 947 ++V ELK Sbjct: 702 LMVGELK 708 Score = 70.9 bits (172), Expect = 2e-12 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%) Frame = +3 Query: 168 KGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 KGHN W TQ + + +S D+ +W T++ P R GH V+ Sbjct: 582 KGHNYPVWDTQFSPYGYY---FVSGGHDRVARLWA-----TDHYQPLRIFAGHLADVNCT 633 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 + + +GS D T+RLWD+ G R F GH + S+ FS + R + +G+ D + Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 693 Query: 522 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668 LW+ +G + + H++ V +RFS + I+ S D V++W+ Sbjct: 694 LLWD-IGHGLMVGELKGHTDTVCSLRFSRDGE--ILASGSMDNTVRLWD 739 Score = 66.6 bits (161), Expect = 4e-11 Identities = 33/105 (31%), Positives = 53/105 (50%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + + S D+T+ +W + G R GH + + S +G+F +G+ DG + LW Sbjct: 642 VATGSADRTVRLWDVLN-----GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 696 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 539 D+ G GHT V S+ FS D + SGS D T++LW+ + Sbjct: 697 DIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAV 741 >ref|NP_001033649.1| WD repeat domain 51A [Bos taurus] Length = 407 Score = 102 bits (254), Expect = 6e-22 Identities = 79/301 (26%), Positives = 116/301 (38%), Gaps = 44/301 (14%) Frame = +3 Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320 E +L KGH VT + + + S S D +++W + Y GH Sbjct: 7 EDPSLERHFKGHRDAVTSVDFSLN-TKQLASGSMDSCLMVWHMKPQTRAY-----RFAGH 60 Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500 V+ V S G SGS D T+R+W + F HT V SV F SD + V+ Sbjct: 61 KDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVT 120 Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680 S DKT+K+W+T K+ H WV C +FSP+ +IVS DK VK+W+ + Sbjct: 121 ASDDKTVKVWSTHRQ-KFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSR 177 Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD---------------------- 794 + ++ H G++ V P G+ A+ G D +WD Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSF 237 Query: 795 --------------------LNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKI 908 L EG+ LYTL G G Y+ + + + Sbjct: 238 HPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMV 297 Query: 909 W 911 W Sbjct: 298 W 298 Score = 100 bits (249), Expect = 2e-21 Identities = 72/256 (28%), Positives = 112/256 (43%), Gaps = 45/256 (17%) Frame = +3 Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479 +R +GH V+ V S + + SGS D L +W + T RF GH V V FS Sbjct: 12 ERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSP 71 Query: 480 DNRQIVSGSRDKTIKLW------------------NTLGVC------------------- 548 + SGSRDKT+++W ++ C Sbjct: 72 SGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWS 131 Query: 549 ----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716 K+ H WV C +FSP+ +IVS DK VK+W+ + + ++ H G+ Sbjct: 132 THRQKFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189 Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPN-RYWLCAA 887 + V P G+ A+ G D +WD+ + L Y L +NAL F P+ Y + A+ Sbjct: 190 VTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNALSFHPSGNYLVTAS 248 Query: 888 TGPSIKIWDL-EGKII 932 + ++KI DL EG+++ Sbjct: 249 SDSTLKILDLMEGRLL 264 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/191 (29%), Positives = 89/191 (46%) Frame = +3 Query: 228 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 407 ++AS DKT+ +W R + + + Q H ++V S DG+ +S S D T++LWD Sbjct: 119 VTASDDKTVKVWSTHRQKFLFSLSQ-----HINWVRCAKFSPDGRLIVSASDDKTVKLWD 173 Query: 408 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 587 T+ + H V V F I + D T+K+W+ + + + HS V Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAV 232 Query: 588 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 767 + + F P+ + +V+ D +K+ +L +L GH G TV S G ASGG Sbjct: 233 NALSFHPSGN--YLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG 290 Query: 768 KDGQAMLWDLN 800 D Q M+W N Sbjct: 291 SDEQVMVWKSN 301 >ref|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) [Bos taurus] Length = 310 Score = 102 bits (253), Expect = 8e-22 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 4/245 (1%) Frame = +3 Query: 195 IATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSDGQFA 368 ++T Q P L A + + + KL+ D+ N G + LRGH V +D Sbjct: 19 LSTQRQDPLPGLPAPNEDILRLNKLSGDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGL 78 Query: 369 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 548 LS S D ++R WDL + T T + GH V + S + S S D+T +LW+ Sbjct: 79 LSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTY 138 Query: 549 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 728 + H V CV+F PNS+ + + DK V++W+ GH G + ++ Sbjct: 139 PLRIY-AGHLADVDCVKFHPNSN--YLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSL 195 Query: 729 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSI 902 SP+G AS G+D + LWDL G L G D I +L FSP+ + +A+ S+ Sbjct: 196 AFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSV 255 Query: 903 KIWDL 917 ++WD+ Sbjct: 256 RVWDI 260 Score = 99.8 bits (247), Expect = 4e-21 Identities = 76/227 (33%), Positives = 107/227 (47%), Gaps = 5/227 (2%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 338 L+GH G + +T D +LS S D +I W L TN + Q GH++ V D Sbjct: 59 LRGHCG---PVYSTRFLADSSGLLSCSEDMSIRYWDLG-SFTNTVLYQ----GHAYPVWD 110 Query: 339 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 518 + IS + S S D T RLW R + GH DV V F ++ + +GS DKT Sbjct: 111 LDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKT 170 Query: 519 IKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 689 ++LW+T V +T H V + FSPN + S G D+ +K+W+LA+ L Sbjct: 171 VRLWSTQQGNSVRLFT----GHRGPVLSLAFSPNGK--YLASAGEDQRLKLWDLASGTLY 224 Query: 690 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 GHT + ++T SPD SL AS D +WD+ DG Sbjct: 225 KELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADG 271 Score = 84.7 bits (208), Expect = 1e-16 Identities = 51/163 (31%), Positives = 79/163 (48%) Frame = +3 Query: 231 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 410 SAS D+T +W R P R GH V V + + +GS D T+RLW Sbjct: 122 SASHDRTARLWSFDRT-----YPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWST 176 Query: 411 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 590 G + R F GH VLS+AFS + + + S D+ +KLW+ Y + H++ ++ Sbjct: 177 QQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYK-ELRGHTDNIT 235 Query: 591 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 719 + FSP+SS ++ S D V+VW++ + T G + L Sbjct: 236 SLTFSPDSS--LVASASMDNSVRVWDIRSSHCSTPADGSSSEL 276 Score = 70.9 bits (172), Expect = 2e-12 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 3/197 (1%) Frame = +3 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 D GT + GH V S F +D+ ++S S D +I+ W+ LG TV + H+ Sbjct: 49 DDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWD-LGSFTNTVLYQGHAYP 107 Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764 V + SP+S S D+ ++W+ + GH ++ V P+ + A+G Sbjct: 108 VWDLDISPHSL--YFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATG 165 Query: 765 GKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIV 935 D LW +G L+T G +++ L FSPN +Y A +K+WDL + Sbjct: 166 STDKTVRLWSTQQGNSVRLFTGHRGPVLS-LAFSPNGKYLASAGEDQRLKLWDLASGTLY 224 Query: 936 DELKQEVISTSSKAKPP 986 EL+ + +S P Sbjct: 225 KELRGHTDNITSLTFSP 241 Score = 70.5 bits (171), Expect = 3e-12 Identities = 39/121 (32%), Positives = 60/121 (49%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + + S DKT+ +W T G R GH V + S +G++ S D L+LW Sbjct: 162 LATGSTDKTVRLWS-----TQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLW 216 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 DL +GT + GHT ++ S+ FS D+ + S S D ++++W+ T D S SE Sbjct: 217 DLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSEL 276 Query: 585 V 587 V Sbjct: 277 V 277 Score = 50.4 bits (119), Expect = 3e-06 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350 GH G V +A +P + SA D+ + +W L G + LRGH+ ++ + S Sbjct: 187 GHRGPVLSLAFSPN-GKYLASAGEDQRLKLWDLAS-----GTLYKELRGHTDNITSLTFS 240 Query: 351 SDGQFALSGSWDGTLRLWDLTT--------GTTTRR---FVGHTKDVLSVAFSSDNRQIV 497 D S S D ++R+WD+ + G+++ + G +VLSV F + N +V Sbjct: 241 PDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLV 300 Query: 498 SG 503 +G Sbjct: 301 TG 302 >ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] Length = 441 Score = 101 bits (252), Expect = 1e-21 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 1/224 (0%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 T +GH + ++ PQ ++ + S D T +W + E + L GHS + + Sbjct: 198 TFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQSGEEVF-----TLTGHSAEIISL 251 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 ++ G ++GS+D T+ +W+ TG +GH ++ S F+ D I++GS DKT Sbjct: 252 SFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTC 311 Query: 522 KLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698 KLW+ + G C T+ SC + + +I + D ++++ A + T Sbjct: 312 KLWDAVNGKCVATLTGHDDEILDSCFDY----TGKLIATASADGTARIFSAATRECVTKL 367 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 GH G ++ ++ +P G+ +G D A +WD G+ L L+G Sbjct: 368 EGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEG 411 Score = 94.4 bits (233), Expect = 2e-19 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 4/257 (1%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TL+GH V IA + D I + S DKT +W + ET G RGH+ + + Sbjct: 155 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV---ET--GKCYHTFRGHTAEIVCL 209 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 + +GS D T +LWD+ +G GH+ +++S++F++ +I++GS D T+ Sbjct: 210 SFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTV 269 Query: 522 KLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698 +W G YT+ H +S F+ + S +I++ DK K+W+ N K Sbjct: 270 TVWEADTGRKVYTL--IGHCAEISSAVFNWDCS--LILTGSMDKTCKLWDAVNGKCVATL 325 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP--NR 869 GH + G L A+ DG A ++ + + L+G + I+ + F+P NR Sbjct: 326 TGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNR 385 Query: 870 YWLCAATGPSIKIWDLE 920 L ++ + +IWD + Sbjct: 386 L-LTGSSDKTARIWDAQ 401 Score = 92.0 bits (227), Expect = 8e-19 Identities = 57/215 (26%), Positives = 111/215 (51%), Gaps = 5/215 (2%) Frame = +3 Query: 303 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482 + LR H +++V ++ G ++GS+D T +LWD +G GH V ++AF++ Sbjct: 112 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 171 Query: 483 -NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 656 +I +GS DKT KLW+ G C +T + H+ + C+ F+P S+ ++ + D Sbjct: 172 YGDKIATGSFDKTCKLWSVETGKCYHTFR--GHTAEIVCLSFNPQST--LVATGSMDTTA 227 Query: 657 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-- 830 K+W++ + + GH+ + +++ + G+ +G D +W+ + G+ +YTL G Sbjct: 228 KLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHC 287 Query: 831 GDIINALCFSPNRYWLCAATGPSIKIWD-LEGKII 932 +I +A+ L + + K+WD + GK + Sbjct: 288 AEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCV 322 Score = 88.2 bits (217), Expect = 1e-17 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 2/205 (0%) Frame = +3 Query: 228 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLW 404 ++ S D+T +W +T G L GH + V + ++ G +GS+D T +LW Sbjct: 134 ITGSYDRTCKLW-----DTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLW 188 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSE 581 + TG F GHT +++ ++F+ + + +GS D T KLW+ G +T+ S Sbjct: 189 SVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHS--- 245 Query: 582 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 761 + S N+S I++ +D V VW + IGH +++ + D SL + Sbjct: 246 -AEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILT 304 Query: 762 GGKDGQAMLWDLNEGKHLYTLDGGD 836 G D LWD GK + TL G D Sbjct: 305 GSMDKTCKLWDAVNGKCVATLTGHD 329 Score = 59.3 bits (142), Expect = 6e-09 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = +3 Query: 309 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488 L GH +S + + G L+GS D T R+WD TG + GHT ++ S AF+ Sbjct: 367 LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGD 426 Query: 489 QIVSGSRDKTIKLW 530 I++GS+D T ++W Sbjct: 427 IIITGSKDNTCRIW 440 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,252,917 Number of Sequences: 33508 Number of extensions: 1129479 Number of successful extensions: 6525 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5120 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 3775710406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-005275 (1213 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_855850.1| PREDICTED: similar to Guanine nucleotide-bindin... 602 e-172 Alignment gi|XP_537934.2| PREDICTED: similar to Guanine nucleotide-bindin... 593 e-169 Alignment gi|XP_855931.1| PREDICTED: similar to Guanine nucleotide-bindin... 504 e-143 Alignment gi|XP_855887.1| PREDICTED: similar to Guanine nucleotide-bindin... 155 7e-38 Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 126 5e-29 Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 126 5e-29 Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 126 5e-29 Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 124 2e-28 Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 121 2e-27 Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 111 2e-24 >ref|XP_855850.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 3 [Canis familiaris] Length = 302 Score = 602 bits (1552), Expect = e-172 Identities = 288/289 (99%), Positives = 289/289 (100%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289 >ref|XP_537934.2| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 1 [Canis familiaris] Length = 316 Score = 593 bits (1528), Expect = e-169 Identities = 286/289 (98%), Positives = 287/289 (99%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQ SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQG-SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 179 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 180 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 239 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 240 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 288 >ref|XP_855931.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 5 [Canis familiaris] Length = 280 Score = 504 bits (1298), Expect = e-143 Identities = 251/289 (86%), Positives = 252/289 (87%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV------ 174 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 KDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 175 -------------------------------KDGQAMLWDLNEGKHLYTLDGGDIINALC 203 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 204 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 252 >ref|XP_855887.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) isoform 4 [Canis familiaris] Length = 101 Score = 155 bits (392), Expect = 7e-38 Identities = 72/73 (98%), Positives = 73/73 (100%) Frame = +3 Query: 783 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS 962 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS Sbjct: 1 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS 60 Query: 963 TSSKAKPPQCTSL 1001 TSSKA+PPQCTSL Sbjct: 61 TSSKAEPPQCTSL 73 >ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 1 [Canis familiaris] Length = 372 Score = 126 bits (316), Expect = 5e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 66 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 119 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 120 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 179 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 180 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 235 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 236 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 295 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 296 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 332 Score = 100 bits (248), Expect = 4e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 107 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 160 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 161 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 220 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 221 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 278 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 279 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 338 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 339 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 370 >ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 2 [Canis familiaris] Length = 410 Score = 126 bits (316), Expect = 5e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 Score = 100 bits (248), Expect = 4e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 >ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 3 [Canis familiaris] Length = 345 Score = 126 bits (316), Expect = 5e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 39 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 92 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 93 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 152 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 153 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 208 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 209 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 268 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 269 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 305 Score = 100 bits (248), Expect = 4e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 80 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 133 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 134 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 193 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 194 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 251 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 252 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 311 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 312 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 343 >ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 5 [Canis familiaris] Length = 415 Score = 124 bits (311), Expect = 2e-28 Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 28/282 (9%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD-------------------------GSLCASGGKDGQAMLWDLNEG 806 H + ++ +P+ G SG +D +WD++ G Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTG 333 Query: 807 KHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L TL G D + L S ++ L A ++++WD + K Sbjct: 334 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 375 Score = 98.2 bits (243), Expect = 1e-20 Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 26/277 (9%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS-----------------------NPII 629 ++W CK +++ H V C+ ++P SS P + Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFL 316 Query: 630 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 809 +S DK +K+W+++ +GH ++ V G S D +WD + Sbjct: 317 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 376 Query: 810 HLYTLDGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + TL+ + + +L F Y + + ++K+W+ Sbjct: 377 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 413 >ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis familiaris] Length = 406 Score = 121 bits (303), Expect = 2e-27 Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 4/268 (1%) Frame = +3 Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320 E +L KGH +T + + + S S D +++W + Y GH Sbjct: 7 EDPSLERHFKGHRDAITSVDFSLN-TKQLASGSMDSCLMVWHMKPQSRAY-----RFAGH 60 Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500 V+ V S G SGS D T+R+W + F HT V SV F SD + +V+ Sbjct: 61 KDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVT 120 Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680 S DKT+K+W+T K+ H WV C RFSP+ +IVS DK VK+W+ + Sbjct: 121 ASDDKTVKVWSTHRQ-KFLFSLSQHINWVRCARFSPDGR--LIVSASDDKTVKLWDKTSR 177 Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALC 854 + ++ H G++ V P G+ A+ D +WD+ + L Y L +NAL Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSA-AVNALS 236 Query: 855 FSPN-RYWLCAATGPSIKIWDL-EGKII 932 F P+ Y L A++ ++KI DL EG+++ Sbjct: 237 FHPSGNYLLTASSDSTLKILDLMEGRLL 264 Score = 84.7 bits (208), Expect = 2e-16 Identities = 56/192 (29%), Positives = 91/192 (47%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 +++AS DKT+ +W R + + + Q H ++V S DG+ +S S D T++LW Sbjct: 118 LVTASDDKTVKVWSTHRQKFLFSLSQ-----HINWVRCARFSPDGRLIVSASDDKTVKLW 172 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 D T+ + H V V F I + S D T+K+W+ + + + HS Sbjct: 173 DKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWD-VRTHRLLQHYQLHSAA 231 Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764 V+ + F P+ + +++ D +K+ +L +L GH G TV S G ASG Sbjct: 232 VNALSFHPSGN--YLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASG 289 Query: 765 GKDGQAMLWDLN 800 G D Q M+W N Sbjct: 290 GSDEQVMVWKSN 301 Score = 50.8 bits (120), Expect = 3e-06 Identities = 35/121 (28%), Positives = 54/121 (44%) Frame = +3 Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353 H G+VT + P I +AS D T+ +W D + + Q + HS V+ + Sbjct: 186 HGGFVTYVDFHPS-GTCIAAASMDNTVKVW----DVRTHRLLQH-YQLHSAAVNALSFHP 239 Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533 G + L+ S D TL++ DL G GH +VAFS SG D+ + +W Sbjct: 240 SGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK 299 Query: 534 T 536 + Sbjct: 300 S 300 >ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris] Length = 833 Score = 111 bits (277), Expect = 2e-24 Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335 GH VT + +P +++ SASRD+T+ +W IP + + H+ V Sbjct: 413 GHKDVVTSVQFSP-LGNLLASASRDRTVRLW----------IPDKRGKSSEFKAHTAPVR 461 Query: 336 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515 V S+DGQF + S D ++++W++ HT V FS D R IVS S DK Sbjct: 462 SVDFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 521 Query: 516 TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692 TIK+W+T K V + S S + + V F+PN + I S G D VK+W++ KL Sbjct: 522 TIKIWDTTN--KQCVNNFSDSVGFANFVDFNPNGT--CIASAGSDHTVKIWDIRVNKLLQ 577 Query: 693 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 ++ H+G +N V+ P G+ + DG + DL EG+ +YTL G Sbjct: 578 HYQVHSGGVNCVSFHPSGNYIITASSDGTLKILDLLEGRLIYTLQG 623 Score = 108 bits (271), Expect = 8e-24 Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 46/257 (17%) Frame = +3 Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479 +R +GH ++ V S G+ + SWD L LW+ R+VGH V SV FS Sbjct: 366 ERYFKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSP 425 Query: 480 DNRQIVSGSRDKTIKLW-----------------------NTLGVCKYTVQDES------ 572 + S SRD+T++LW + G T ++ Sbjct: 426 LGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWN 485 Query: 573 ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716 H+ WV C +FSP+ +IVSC DK +K+W+ N + N G+ Sbjct: 486 MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGF 543 Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884 N V +P+G+ AS G D +WD+ K H GG +N + F P+ Y + A Sbjct: 544 ANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGG--VNCVSFHPSGNYIITA 601 Query: 885 ATGPSIKIWD-LEGKII 932 ++ ++KI D LEG++I Sbjct: 602 SSDGTLKILDLLEGRLI 618 Score = 95.5 bits (236), Expect = 9e-20 Identities = 62/192 (32%), Positives = 95/192 (49%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + +AS DK+I +W + R Y +L H+H+V S DG+ +S S D T+++W Sbjct: 472 LATASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 526 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 D T F V F+ + I S D T+K+W+ + V K + HS Sbjct: 527 DTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWD-IRVNKLLQHYQVHSGG 585 Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764 V+CV F P+ + I++ D +K+ +L +L GHTG + TV+ S G L +SG Sbjct: 586 VNCVSFHPSGN--YIITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSG 643 Query: 765 GKDGQAMLWDLN 800 G D Q +LW N Sbjct: 644 GADTQVLLWRTN 655 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,294,427 Number of Sequences: 33732 Number of extensions: 1320341 Number of successful extensions: 7347 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5748 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4685962090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-005275 (1213 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_006089.1| guanine nucleotide binding protein (G protein),... 602 e-172 Alignment gi|XP_931937.1| PREDICTED: similar to Guanine nucleotide-bindin... 268 9e-72 Alignment gi|XP_941915.1| PREDICTED: similar to Guanine nucleotide-bindin... 268 9e-72 Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase, iso... 126 4e-29 Alignment gi|NP_061942.2| WD repeat domain 5B [Homo sapiens] 114 2e-25 Alignment gi|NP_438172.1| WD repeat domain 5 [Homo sapiens] 112 5e-25 Alignment gi|NP_060058.1| WD repeat domain 5 [Homo sapiens] 112 5e-25 Alignment gi|NP_758440.1| WD repeat domain 51B [Homo sapiens] 110 2e-24 Alignment gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 107 2e-23 Alignment gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] 106 5e-23 >ref|NP_006089.1| guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 [Homo sapiens] Length = 317 Score = 602 bits (1552), Expect = e-172 Identities = 288/289 (99%), Positives = 289/289 (100%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289 >ref|XP_931937.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) [Homo sapiens] Length = 162 Score = 268 bits (684), Expect = 9e-72 Identities = 125/142 (88%), Positives = 129/142 (90%) Frame = +3 Query: 576 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755 +EWVSCVRF PNSSNPI VSC WDKLVKVWNLANCKLKTNHIGHTGYLNTVT+SP+GSLC Sbjct: 4 TEWVSCVRFLPNSSNPITVSCSWDKLVKVWNLANCKLKTNHIGHTGYLNTVTMSPNGSLC 63 Query: 756 ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 935 ASGGKDGQAMLWDLNEGKHLY DGG IIN LCFSPN YWLCAA GPSIKIWDL IIV Sbjct: 64 ASGGKDGQAMLWDLNEGKHLYMPDGGGIINTLCFSPNCYWLCAAMGPSIKIWDLGVNIIV 123 Query: 936 DELKQEVISTSSKAKPPQCTSL 1001 DELKQEVIST SKA+PPQCTSL Sbjct: 124 DELKQEVISTGSKAEPPQCTSL 145 >ref|XP_941915.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) [Homo sapiens] Length = 162 Score = 268 bits (684), Expect = 9e-72 Identities = 125/142 (88%), Positives = 129/142 (90%) Frame = +3 Query: 576 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 755 +EWVSCVRF PNSSNPI VSC WDKLVKVWNLANCKLKTNHIGHTGYLNTVT+SP+GSLC Sbjct: 4 TEWVSCVRFLPNSSNPITVSCSWDKLVKVWNLANCKLKTNHIGHTGYLNTVTMSPNGSLC 63 Query: 756 ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 935 ASGGKDGQAMLWDLNEGKHLY DGG IIN LCFSPN YWLCAA GPSIKIWDL IIV Sbjct: 64 ASGGKDGQAMLWDLNEGKHLYMPDGGGIINTLCFSPNCYWLCAAMGPSIKIWDLGVNIIV 123 Query: 936 DELKQEVISTSSKAKPPQCTSL 1001 DELKQEVIST SKA+PPQCTSL Sbjct: 124 DELKQEVISTGSKAEPPQCTSL 145 >ref|NP_000421.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) [Homo sapiens] Length = 410 Score = 126 bits (316), Expect = 4e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 Score = 100 bits (248), Expect = 3e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 >ref|NP_061942.2| WD repeat domain 5B [Homo sapiens] Length = 330 Score = 114 bits (285), Expect = 2e-25 Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 7/272 (2%) Frame = +3 Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332 L+ TL GH V+ + +P + + S+S D+ II+W G ++ L GH+ + Sbjct: 33 LKCTLVGHTEAVSSVKFSPN-GEWLASSSADRLIIIWGAYD-----GKYEKTLYGHNLEI 86 Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512 SDV SSD +S S D TL+LWD+ +G + GH+ V F+ + I+SGS D Sbjct: 87 SDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFD 146 Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686 +T+K+W G C T+ +HS+ VS V F N S +IVS +D L ++W+ A+ + L Sbjct: 147 ETVKIWEVKTGKCLKTL--SAHSDPVSAVHF--NCSGSLIVSGSYDGLCRIWDAASGQCL 202 Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851 KT ++ V SP+G + D LWD + G+ L T G I Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262 Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 947 + ++ + + + IW+L+ K IV +L+ Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 294 Score = 89.0 bits (219), Expect = 8e-18 Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 4/217 (1%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH+ +V P ++I+S S D+T+ +W E G + L HS VS V Sbjct: 120 TLKGHSNYVFCCNFNPP-SNLIISGSFDETVKIW-----EVKTGKCLKTLSAHSDPVSAV 173 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518 + G +SGS+DG R+WD +G + V +S V FS + + I++ + D T Sbjct: 174 HFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNT 233 Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 +KLW+ + G C T + ++ FS IVS D LV +WNL ++ Sbjct: 234 LKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 292 Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLN 800 GHT + + P +L AS D LW N Sbjct: 293 LQGHTDVVISAACHPTENLIASAALENDKTIKLWMSN 329 >ref|NP_438172.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 112 bits (281), Expect = 5e-25 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Frame = +3 Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332 L+ TL GH V+ + +P + + S+S DK I +W G ++ + GH + Sbjct: 37 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90 Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512 SDV SSD +S S D TL++WD+++G + GH+ V F+ + IVSGS D Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150 Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686 +++++W+ G C T+ +HS+ VS V F N +IVS +D L ++W+ A+ + L Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206 Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851 KT ++ V SP+G + D LWD ++GK L T G I Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266 Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968 + ++ + + + IW+L+ K IV +L+ VIST+ Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308 Score = 86.7 bits (213), Expect = 4e-17 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH+ +V PQ ++I+S S D+++ +W + G + L HS VS V Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518 + DG +S S+DG R+WD +G + + +S V FS + + I++ + D T Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237 Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 +KLW+ + G C T + ++ FS IVS D LV +WNL ++ Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296 Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791 GHT + + P ++ AS D LW Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330 >ref|NP_060058.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 112 bits (281), Expect = 5e-25 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Frame = +3 Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332 L+ TL GH V+ + +P + + S+S DK I +W G ++ + GH + Sbjct: 37 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90 Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512 SDV SSD +S S D TL++WD+++G + GH+ V F+ + IVSGS D Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150 Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686 +++++W+ G C T+ +HS+ VS V F N +IVS +D L ++W+ A+ + L Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206 Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851 KT ++ V SP+G + D LWD ++GK L T G I Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266 Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968 + ++ + + + IW+L+ K IV +L+ VIST+ Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308 Score = 86.7 bits (213), Expect = 4e-17 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH+ +V PQ ++I+S S D+++ +W + G + L HS VS V Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518 + DG +S S+DG R+WD +G + + +S V FS + + I++ + D T Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237 Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 +KLW+ + G C T + ++ FS IVS D LV +WNL ++ Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296 Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791 GHT + + P ++ AS D LW Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330 >ref|NP_758440.1| WD repeat domain 51B [Homo sapiens] Length = 478 Score = 110 bits (275), Expect = 2e-24 Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 46/257 (17%) Frame = +3 Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479 +R +GH ++ + +S +G+ + SWD L LW+ R+VGH V SV FS Sbjct: 11 ERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSP 70 Query: 480 DNRQIVSGSRDKTIKLW-----------------------NTLGVCKYTVQDES------ 572 + S SRD+T++LW + G T ++ Sbjct: 71 HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWS 130 Query: 573 ------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 716 H+ WV C +FSP+ +IVSC DK +K+W+ N + N G+ Sbjct: 131 MYRQRFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGF 188 Query: 717 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCA 884 N V +P G+ AS G D +WD+ K H GG +N + F P+ Y + A Sbjct: 189 ANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGG--VNCISFHPSGNYLITA 246 Query: 885 ATGPSIKIWD-LEGKII 932 ++ ++KI D LEG++I Sbjct: 247 SSDGTLKILDLLEGRLI 263 Score = 109 bits (273), Expect = 4e-24 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVS 335 GH VT + +P +++ SASRD+T+ +W IP + + H+ V Sbjct: 58 GHKDVVTSVQFSPH-GNLLASASRDRTVRLW----------IPDKRGKFSEFKAHTAPVR 106 Query: 336 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515 V S+DGQF + S D ++++W + HT V FS D R IVS S DK Sbjct: 107 SVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 166 Query: 516 TIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 692 TIK+W+T K V + S S + + V F+P S I S G D+ VKVW++ KL Sbjct: 167 TIKIWDTTN--KQCVNNFSDSVGFANFVDFNP--SGTCIASAGSDQTVKVWDVRVNKLLQ 222 Query: 693 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 ++ H+G +N ++ P G+ + DG + DL EG+ +YTL G Sbjct: 223 HYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG 268 Score = 95.1 bits (235), Expect = 1e-19 Identities = 61/192 (31%), Positives = 95/192 (49%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + +AS DK+I +W + R Y +L H+H+V S DG+ +S S D T+++W Sbjct: 117 LATASEDKSIKVWSMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 D T F V F+ I S D+T+K+W+ + V K + HS Sbjct: 172 DTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWD-VRVNKLLQHYQVHSGG 230 Query: 585 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 764 V+C+ F P+ + +++ D +K+ +L +L GHTG + TV+ S G L ASG Sbjct: 231 VNCISFHPSGN--YLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASG 288 Query: 765 GKDGQAMLWDLN 800 G D Q +LW N Sbjct: 289 GADTQVLLWRTN 300 >ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens] Length = 315 Score = 107 bits (267), Expect = 2e-23 Identities = 82/272 (30%), Positives = 123/272 (45%), Gaps = 7/272 (2%) Frame = +3 Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353 H G V A +P M+L+ S D + W ET G L GH+ V S Sbjct: 20 HGGEVNSSAFSPD-GQMLLTGSEDGCVYGW-----ETRSGQLLWRLGGHTGPVKFCRFSP 73 Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533 DG S S D T+RLWD+ R GH + V +V+FS D+RQ+ SG DK + LW+ Sbjct: 74 DGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD 133 Query: 534 TLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--- 698 + + V H + + FSP + + + WD V++W+L +H Sbjct: 134 VQSGQMLRLLV---GHRDSIQSSDFSPTVN--CLATGSWDSTVRIWDLRMVTPAVSHQAL 188 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYW 875 GH+G ++ + S G L ASG D +W L L G + ++ FSP+ W Sbjct: 189 EGHSGNISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELW 247 Query: 876 LCAA-TGPSIKIWDLEGKIIVDELKQEVISTS 968 L +A +K+WD ++ LKQ V+ + Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVA 279 Score = 90.5 bits (223), Expect = 3e-18 Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 4/227 (1%) Frame = +3 Query: 318 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 497 H V+ S DGQ L+GS DG + W+ +G R GHT V FS D Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79 Query: 498 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 677 S S D T++LW+ V + H V V FSP+S + S GWDK V +W++ + Sbjct: 80 SASCDCTVRLWDVARAKCLRVL-KGHQRSVETVSFSPDSRQ--LASGGWDKRVMLWDVQS 136 Query: 678 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----EGKHLYTLDGGDIIN 845 ++ +GH + + SP + A+G D +WDL H I+ Sbjct: 137 GQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNIS 196 Query: 846 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPP 986 LC+S + + +I IW ++ +LK V S A P Sbjct: 197 CLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243 Score = 78.2 bits (191), Expect = 1e-14 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Frame = +3 Query: 435 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 614 F H +V S AFS D + +++GS D + W T + + H+ V RFSP+ Sbjct: 17 FGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRS-GQLLWRLGGHTGPVKFCRFSPDG 75 Query: 615 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 794 + S D V++W++A K GH + TV+ SPD ASGG D + MLWD Sbjct: 76 H--LFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWD 133 Query: 795 LNEGKHLYTLDG-GDIINALCFSPNRYWLCAATG---PSIKIWDL 917 + G+ L L G D I + FSP C ATG +++IWDL Sbjct: 134 VQSGQMLRLLVGHRDSIQSSDFSPTVN--CLATGSWDSTVRIWDL 176 Score = 50.8 bits (120), Expect = 2e-06 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L+GH+G ++ + + ++ S S DKTI +WK T L+GH +V + Sbjct: 188 LEGHSGNISCLCYSAS--GLLASGSWDKTIHIWKPTTSSLLI-----QLKGHVTWVKSIA 240 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKT 518 S D + S + +++WD TG DV + AF+ D + +VSG+ D+T Sbjct: 241 FSPDELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQT 299 >ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] Length = 415 Score = 106 bits (264), Expect = 5e-23 Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 1/224 (0%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 T +GH + ++ PQ ++ + S D T +W + E Y LRGHS + + Sbjct: 172 TFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQNGEEVY-----TLRGHSAEIISL 225 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 ++ G ++GS+D T+ +WD TG +GH ++ S +F+ D I++GS DKT Sbjct: 226 SFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTC 285 Query: 522 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698 KLW+ T G C T+ SC + + +I + D ++++ A K Sbjct: 286 KLWDATNGKCVATLTGHDDEILDSCFDY----TGKLIATASADGTARIFSAATRKCIAKL 341 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 830 GH G ++ ++ +P G+ +G D A +WD G+ L L+G Sbjct: 342 EGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385 Score = 92.8 bits (229), Expect = 5e-19 Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 2/226 (0%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 LK H +T +A ++ S D+T +W +T G L GH + V + Sbjct: 88 LKAHILPLTNVALNKS-GSCFITGSYDRTCKLW-----DTASGEELNTLEGHRNVVYAIA 141 Query: 345 ISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 ++ G +GS+D T +LW + TG F GHT +++ ++F+ + + +GS D T Sbjct: 142 FNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA 201 Query: 522 KLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698 KLW+ G YT++ S + S N+S I++ +D V VW+ + Sbjct: 202 KLWDIQNGEEVYTLRGHS----AEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNIL 257 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 836 IGH +++ + + D SL +G D LWD GK + TL G D Sbjct: 258 IGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHD 303 Score = 87.8 bits (216), Expect = 2e-17 Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 10/253 (3%) Frame = +3 Query: 186 VTQIATTPQFPDMILSASRDKTI------IMWKLTRDETNYGIPQRALRGHSHFVSDVVI 347 V+ + Q + +L+ASR + + + KL ++ + + L+ H +++V + Sbjct: 41 VSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNHTFYLFKVLKAHILPLTNVAL 100 Query: 348 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIK 524 + G ++GS+D T +LWD +G GH V ++AF++ +I +GS DKT K Sbjct: 101 NKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCK 160 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 LW+ G C +T + H+ + C+ F+P S+ ++ + D K+W++ N + Sbjct: 161 LWSVETGKCYHTFR--GHTAEIVCLSFNPQST--LVATGSMDTTAKLWDIQNGEEVYTLR 216 Query: 702 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYW 875 GH+ + +++ + G +G D ++WD + G+ + L G +I +A Sbjct: 217 GHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLI 276 Query: 876 LCAATGPSIKIWD 914 L + + K+WD Sbjct: 277 LTGSMDKTCKLWD 289 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = +3 Query: 309 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 488 L GH +S + + G L+GS D T R+WD TG + GHT ++ S AF+ Sbjct: 341 LEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGN 400 Query: 489 QIVSGSRDKTIKLW 530 +++GS+D T ++W Sbjct: 401 IVITGSKDNTCRIW 414 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,829,927 Number of Sequences: 39411 Number of extensions: 1323073 Number of successful extensions: 6631 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5330 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 4089062705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-005275 (1213 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_032169.1| guanine nucleotide binding protein (G protein),... 602 e-172 Alignment gi|NP_082016.1| WD repeat domain 51B [Mus musculus] 126 4e-29 Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso... 126 5e-29 Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 112 6e-25 Alignment gi|NP_081389.1| WD repeat domain 5B [Mus musculus] 112 8e-25 Alignment gi|XP_987745.1| PREDICTED: similar to platelet-activating facto... 110 3e-24 Alignment gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] 109 7e-24 Alignment gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate... 104 2e-22 Alignment gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei... 104 2e-22 Alignment gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ... 103 5e-22 >ref|NP_032169.1| guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 [Mus musculus] Length = 317 Score = 602 bits (1552), Expect = e-172 Identities = 288/289 (99%), Positives = 289/289 (100%) Frame = +3 Query: 135 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 314 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60 Query: 315 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 854 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 240 Query: 855 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAKPPQCTSL 1001 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA+PPQCTSL Sbjct: 241 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289 >ref|NP_082016.1| WD repeat domain 51B [Mus musculus] Length = 476 Score = 126 bits (317), Expect = 4e-29 Identities = 85/269 (31%), Positives = 128/269 (47%), Gaps = 5/269 (1%) Frame = +3 Query: 141 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 320 E L + KGH +T +P I +AS D +++W L Y GH Sbjct: 6 EDPILERSFKGHKAAITSADFSPNCKQ-IATASWDTFLMLWSLKPHARAYRYV-----GH 59 Query: 321 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 500 V+ + S G S S D T+RLW L + F HT V SV FS+D + +V+ Sbjct: 60 KDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVT 119 Query: 501 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 680 S DK+IK+W+ ++ H+ WV C +FSP+ +IVSC DK +K+W+ N Sbjct: 120 ASEDKSIKVWSMFRQ-RFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNK 176 Query: 681 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINAL 851 + N G+ N V +P+G+ AS G D +WD+ K H G +N L Sbjct: 177 QCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG--VNCL 234 Query: 852 CFSP-NRYWLCAATGPSIKIWDL-EGKII 932 F P + A++ ++K+ DL EG++I Sbjct: 235 SFHPLGNSLVTASSDGTVKMLDLIEGRLI 263 Score = 99.0 bits (245), Expect = 9e-21 Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 43/253 (16%) Frame = +3 Query: 171 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 350 GH VT + +PQ +++ SASRD+T+ +W L R + + H+ V V S Sbjct: 58 GHKDVVTSLQFSPQ-GNLLASASRDRTVRLWVLDRKGKS-----SEFKAHTAPVRSVDFS 111 Query: 351 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 530 +DGQ ++ S D ++++W + HT V FS D R IVS S DKTIK+W Sbjct: 112 ADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171 Query: 531 NTLGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-- 701 +T K V + S S + + V F+PN + I S G D VK+W++ KL ++ Sbjct: 172 DTTN--KQCVNNFSDSVGFANFVDFNPNGT--CIASAGSDHAVKIWDIRMNKLLQHYQVH 227 Query: 702 ----------------------------------------GHTGYLNTVTVSPDGSLCAS 761 GHTG + TV+ S DG L S Sbjct: 228 SCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTS 287 Query: 762 GGKDGQAMLWDLN 800 GG D Q ++W N Sbjct: 288 GGADAQVLIWRTN 300 >ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit [Mus musculus] Length = 410 Score = 126 bits (316), Expect = 5e-29 Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 23/277 (8%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L GH VT++ P F M+ SAS D TI +W + G +R L+GH+ V D+ Sbjct: 104 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVW-----DYETGDFERTLKGHTDSVQDIS 157 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 524 G+ S S D T++LWD R GH +V SVA + IVS SRDKTIK Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217 Query: 525 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 701 +W G C T H EWV VR PN +I SC D+ V+VW +A + K Sbjct: 218 MWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 Query: 702 GHTGYLNTVTVSPD--------------------GSLCASGGKDGQAMLWDLNEGKHLYT 821 H + ++ +P+ G SG +D +WD++ G L T Sbjct: 274 EHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 Query: 822 LDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 L G D + L S ++ L A ++++WD + K Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 Score = 100 bits (248), Expect = 4e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 145 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 198 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 199 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 259 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 >ref|NP_543124.1| WD repeat domain 5 [Mus musculus] Length = 334 Score = 112 bits (281), Expect = 6e-25 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Frame = +3 Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332 L+ TL GH V+ + +P + + S+S DK I +W G ++ + GH + Sbjct: 37 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90 Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512 SDV SSD +S S D TL++WD+++G + GH+ V F+ + IVSGS D Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150 Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686 +++++W+ G C T+ +HS+ VS V F N +IVS +D L ++W+ A+ + L Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206 Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINAL 851 KT ++ V SP+G + D LWD ++GK L T G I Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266 Query: 852 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK---QEVISTS 968 + ++ + + + IW+L+ K IV +L+ VIST+ Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308 Score = 86.7 bits (213), Expect = 5e-17 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 4/214 (1%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH+ +V PQ ++I+S S D+++ +W + G + L HS VS V Sbjct: 124 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVKTGKCLKTLPAHSDPVSAV 177 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518 + DG +S S+DG R+WD +G + + +S V FS + + I++ + D T Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237 Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 +KLW+ + G C T + ++ FS IVS D LV +WNL ++ Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQK 296 Query: 696 HIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLW 791 GHT + + P ++ AS D LW Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330 >ref|NP_081389.1| WD repeat domain 5B [Mus musculus] Length = 328 Score = 112 bits (280), Expect = 8e-25 Identities = 84/272 (30%), Positives = 138/272 (50%), Gaps = 7/272 (2%) Frame = +3 Query: 153 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 332 LR TL GH+ ++ + +P + + S++ D II+W G ++ L GHS + Sbjct: 31 LRLTLAGHSAAISSVKFSPN-GEWLASSAADALIIIWGAYD-----GNCKKTLYGHSLEI 84 Query: 333 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 512 SDV SSD +S S D TL++WD+ +G + GH+ V F+ + IVSGS D Sbjct: 85 SDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFD 144 Query: 513 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 686 +++K+W G C T+ +HS+ +S V F+ N S +IVS +D L ++W+ A+ + L Sbjct: 145 ESVKIWEVKTGKCLKTL--SAHSDPISAVNFNCNGS--LIVSGSYDGLCRIWDAASGQCL 200 Query: 687 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS-- 860 +T ++ V SP+G + D LWD + G+ L T G F+ Sbjct: 201 RTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASF 260 Query: 861 --PNRYWLCAATGPS-IKIWDLEGKIIVDELK 947 R W+ + + + + IW+L+ K IV L+ Sbjct: 261 SVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQ 292 Score = 82.0 bits (201), Expect = 1e-15 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 2/202 (0%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH+ +V P ++I+S S D+++ +W E G + L HS +S V Sbjct: 118 TLKGHSDFVFCCDFNPP-SNLIVSGSFDESVKIW-----EVKTGKCLKTLSAHSDPISAV 171 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 518 + +G +SGS+DG R+WD +G R +S V FS + + I++ + D T Sbjct: 172 NFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNT 231 Query: 519 IKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 +KLW+ + G C T + ++ FS + +VS D +V +WNL ++ Sbjct: 232 LKLWDYSRGRCLKTYTGHKNEKYCLFASFSV-TGRKWVVSGSEDNMVYIWNLQTKEIVQR 290 Query: 696 HIGHTGYLNTVTVSPDGSLCAS 761 GHT + + P ++ AS Sbjct: 291 LQGHTDVVISAACHPTKNIIAS 312 >ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit [Mus musculus] Length = 312 Score = 110 bits (275), Expect = 3e-24 Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Frame = +3 Query: 300 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 479 +R L+GH+ V D+ G+ S S D T++LWD R GH +V SVA Sbjct: 45 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMP 104 Query: 480 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 656 + IVS SRDKTIK+W G C T H EWV VR PN +I SC D+ V Sbjct: 105 NGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVR--PNQDGTLIASCSNDQTV 160 Query: 657 KVWNLANCKLKTNHIGHTGYLNTVTVSPD--------------------GSLCASGGKDG 776 +VW +A + K H + ++ +P+ G SG +D Sbjct: 161 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 220 Query: 777 QAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGK 926 +WD++ G L TL G D + L S ++ L A ++++WD + K Sbjct: 221 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 272 Score = 100 bits (248), Expect = 4e-21 Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 21/272 (7%) Frame = +3 Query: 162 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 TLKGH V I+ ++ S S D TI +W E R + GH H VS V Sbjct: 47 TLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECI-----RTMHGHDHNVSSV 100 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 I +G +S S D T+++W++ TG + F GH + V V + D I S S D+T+ Sbjct: 101 AIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 160 Query: 522 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS------------------NPIIVSCGW 644 ++W CK +++ H V C+ ++P SS P ++S Sbjct: 161 RVWVVATKECKAELREHEHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 218 Query: 645 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 824 DK +K+W+++ +GH ++ V G S D +WD + + TL Sbjct: 219 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 278 Query: 825 DGGD-IINALCFSPNR-YWLCAATGPSIKIWD 914 + + + +L F Y + + ++K+W+ Sbjct: 279 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 310 >ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] Length = 303 Score = 109 bits (272), Expect = 7e-24 Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Frame = +3 Query: 138 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 317 T+ L L GH G V +P +I S+S D +I +W + R + + L+G Sbjct: 55 TKSGRLLWRLAGHRGPVKSCCFSPD-GRLIASSSSDHSIRLWDVARSKCLH-----VLKG 108 Query: 318 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 497 H V V S D + SG WD +W++ +G VGH + S FS + + Sbjct: 109 HQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLA 168 Query: 498 SGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668 +GS D T+ +W+ + V Y E H+ +SC+ +S + ++ S WDK + VW Sbjct: 169 TGSWDSTVHIWDLRASTPVVSYH-NLEGHTGNISCLCYSASG---LLASGSWDKTICVWK 224 Query: 669 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN 845 L GHT ++N++ SPD AS G +WD GK L TL G D+ + Sbjct: 225 PTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAH 284 Query: 846 ALCFSPN 866 A F+P+ Sbjct: 285 ACIFTPD 291 Score = 95.1 bits (235), Expect = 1e-19 Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 6/259 (2%) Frame = +3 Query: 174 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 353 H+G V A +P +L+AS D + +W T G L GH V S Sbjct: 25 HHGEVNCSAFSPD-GRTLLTASDDGCVYVWG-----TKSGRLLWRLAGHRGPVKSCCFSP 78 Query: 354 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 533 DG+ S S D ++RLWD+ GH + V +V+FS D++Q+ SG DK +W Sbjct: 79 DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE 138 Query: 534 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNH--IG 704 + + H + + FSP S + + + WD V +W+L A+ + + H G Sbjct: 139 VQSGRRVHLL-VGHCDSIQSSDFSPTSDS--LATGSWDSTVHIWDLRASTPVVSYHNLEG 195 Query: 705 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLC 881 HTG ++ + S G L ASG D +W L G I +N+L FSP+ L Sbjct: 196 HTGNISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLA 254 Query: 882 AA-TGPSIKIWD-LEGKII 932 +A ++K+WD L GK + Sbjct: 255 SAGYSRTVKVWDCLTGKCL 273 Score = 82.8 bits (203), Expect = 7e-16 Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 3/203 (1%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 LKGH V ++ +P + S DK I+W E G L GH + Sbjct: 106 LKGHQRSVETVSFSPD-SKQLASGGWDKRAIVW-----EVQSGRRVHLLVGHCDSIQSSD 159 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDK 515 S +GSWD T+ +WDL T GHT ++ + +S+ + SGS DK Sbjct: 160 FSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGL-LASGSWDK 218 Query: 516 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 695 TI +W +Q + H+ WV+ + FSP+ + S G+ + VKVW+ K Sbjct: 219 TICVWKPT-TNNLPLQLKGHTIWVNSLAFSPDELK--LASAGYSRTVKVWDCLTGKCLET 275 Query: 696 HIGHTGYLNTVTVSPDGSLCASG 764 G + +PDG L SG Sbjct: 276 LKGMLDVAHACIFTPDGKLLVSG 298 Score = 49.7 bits (117), Expect = 6e-06 Identities = 32/114 (28%), Positives = 57/114 (50%) Frame = +3 Query: 165 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 344 L+GH G ++ + + ++ S S DKTI +WK T + +P + L+GH+ +V+ + Sbjct: 193 LEGHTGNISCLCYSAS--GLLASGSWDKTICVWKPTTNN----LPLQ-LKGHTIWVNSLA 245 Query: 345 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 506 S D S + T+++WD TG G + F+ D + +VSG+ Sbjct: 246 FSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPDGKLLVSGA 299 >ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Mus musculus] Length = 589 Score = 104 bits (259), Expect = 2e-22 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 2/216 (0%) Frame = +3 Query: 276 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 455 +E N G + LRGH V +D LS S D ++R WDL + T T + GH Sbjct: 327 EEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYP 386 Query: 456 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 635 V V S + SGS D+T +LW+ + H V CV+F PNS+ + + Sbjct: 387 VWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIY-AGHLADVDCVKFHPNSN--YLAT 443 Query: 636 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 815 DK V++W+ GH G + +++ SP+G AS G+D + LWDL G Sbjct: 444 GSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLF 503 Query: 816 YTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDL 917 L G D I +L FSP+ + +A+ S+++WD+ Sbjct: 504 KELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539 Score = 82.4 bits (202), Expect = 9e-16 Identities = 54/184 (29%), Positives = 86/184 (46%) Frame = +3 Query: 168 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 347 +GH V + +P F S S D+T +W R P R GH V V Sbjct: 381 QGHAYPVWDVDISP-FSLYFASGSHDRTARLWSFDRT-----YPLRIYAGHLADVDCVKF 434 Query: 348 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 527 + + +GS D T+RLW G + R F GH VLS++FS + + + S D+ +KL Sbjct: 435 HPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKL 494 Query: 528 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 707 W+ + + H++ ++ + FSP+S +I S D V+VW++ + T G Sbjct: 495 WDLASGTLFK-ELRGHTDSITSLAFSPDSG--LIASASMDNSVRVWDIRSTCCNTPADGS 551 Query: 708 TGYL 719 +G L Sbjct: 552 SGEL 555 Score = 73.2 bits (178), Expect = 5e-13 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 3/194 (1%) Frame = +3 Query: 414 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 593 TGT + GH V S F +D+ ++S S D +I+ W+ LG TV + H+ V Sbjct: 331 TGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWD-LGSFTNTVLYQGHAYPVWD 389 Query: 594 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 773 V SP S S D+ ++W+ + GH ++ V P+ + A+G D Sbjct: 390 VDISPFSL--YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTD 447 Query: 774 GQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDEL 944 LW +G L+T G +++ L FSPN +Y A +K+WDL + EL Sbjct: 448 KTVRLWSAQQGNSVRLFTGHRGPVLS-LSFSPNGKYLASAGEDQRLKLWDLASGTLFKEL 506 Query: 945 KQEVISTSSKAKPP 986 + S +S A P Sbjct: 507 RGHTDSITSLAFSP 520 Score = 72.8 bits (177), Expect = 7e-13 Identities = 40/121 (33%), Positives = 60/121 (49%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + + S DKT+ +W + G R GH V + S +G++ S D L+LW Sbjct: 441 LATGSTDKTVRLWSAQQ-----GNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLW 495 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 584 DL +GT + GHT + S+AFS D+ I S S D ++++W+ C T D S E Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGEL 555 Query: 585 V 587 V Sbjct: 556 V 556 >ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa [Mus musculus] Length = 801 Score = 104 bits (259), Expect = 2e-22 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Frame = +3 Query: 303 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 482 + L GHS V S D + LS S DGT+RLW L T T + GH V FS Sbjct: 538 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 597 Query: 483 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662 VSG D+ +LW T + H V+C RF PNS+ + + D+ V++ Sbjct: 598 GYYFVSGGHDRVARLWATDHYQPLRI-FAGHLADVNCTRFHPNSN--YVATGSADRTVRL 654 Query: 663 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839 W++ N GH G ++++T SP+G A+G DG+ +LWD+ G + L G D Sbjct: 655 WDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDT 714 Query: 840 INALCFSPNRYWLCAAT-GPSIKIWD 914 + +L FS + L + + ++++WD Sbjct: 715 VCSLRFSRDGEILASGSMDNTVRLWD 740 Score = 77.0 bits (188), Expect = 4e-14 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 3/245 (1%) Frame = +3 Query: 222 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 401 +I D T+ +W +T P++ + V +SD S D R+ Sbjct: 485 LIAGGFADSTVRVWSVT--------PKK--------LRSVKQASDLSLIDKESDDVLERI 528 Query: 402 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 581 D T + + GH+ V +FS D ++S S D T++LW +L V + H+ Sbjct: 529 MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW-SLQTFTCLVGYKGHNY 587 Query: 582 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 761 V +FSP VS G D++ ++W + + GH +N P+ + A+ Sbjct: 588 PVWDTQFSPYGY--YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVAT 645 Query: 762 GGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKII 932 G D LWD+ G ++T G I++L FSPN R+ AT + +WD+ ++ Sbjct: 646 GSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLM 704 Query: 933 VDELK 947 V ELK Sbjct: 705 VGELK 709 Score = 70.9 bits (172), Expect = 3e-12 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%) Frame = +3 Query: 168 KGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 341 KGHN W TQ + + +S D+ +W T++ P R GH V+ Sbjct: 583 KGHNYPVWDTQFSPYGYY---FVSGGHDRVARLWA-----TDHYQPLRIFAGHLADVNCT 634 Query: 342 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 521 + + +GS D T+RLWD+ G R F GH + S+ FS + R + +G+ D + Sbjct: 635 RFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 694 Query: 522 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 668 LW+ +G + + H++ V +RFS + I+ S D V++W+ Sbjct: 695 LLWD-IGHGLMVGELKGHTDTVCSLRFSRDGE--ILASGSMDNTVRLWD 740 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/105 (31%), Positives = 53/105 (50%) Frame = +3 Query: 225 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 404 + + S D+T+ +W + G R GH + + S +G+F +G+ DG + LW Sbjct: 643 VATGSADRTVRLWDVLN-----GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLW 697 Query: 405 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 539 D+ G GHT V S+ FS D + SGS D T++LW+ + Sbjct: 698 DIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAV 742 >ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus] Length = 658 Score = 103 bits (256), Expect = 5e-22 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Frame = +3 Query: 306 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 485 +L GH+ V V +++ + ++GS G++R+WDL R +GH ++ S+ F Sbjct: 58 SLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYG 117 Query: 486 RQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 662 + SGS+D IKLW+ C + + HS+ V C+RFSP+ + S D VK+ Sbjct: 118 EFVASGSQDTNIKLWDIRRKGCVFRYR--GHSQAVRCLRFSPDGK--WLASAADDHTVKL 173 Query: 663 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDI 839 W+L K+ + GHTG +N V P+ L ASG D WDL + + + ++G Sbjct: 174 WDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGP 233 Query: 840 INALCFSPNRYWLCAATGPSIKIWDLE 920 + ++ F+P+ L + S++++ E Sbjct: 234 VRSVLFNPDGCCLYSGCQDSLRVYGWE 260 Score = 84.3 bits (207), Expect = 2e-16 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Frame = +3 Query: 162 TLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 338 +L GH V + TP+ ++I++ S+ +I +W L + R L GH + Sbjct: 58 SLTGHTSPVESVRLNTPE--ELIVAGSQSGSIRVWDLEAAKI-----LRTLMGHKANICS 110 Query: 339 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 518 + G+F SGS D ++LWD+ R+ GH++ V + FS D + + S + D T Sbjct: 111 LDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHT 170 Query: 519 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 698 +KLW+ L K + H+ V+ V F PN ++ S D+ ++ W+L ++ + Sbjct: 171 VKLWD-LTAGKMMSEFPGHTGPVNVVEFHPNEY--LLASGSSDRTIRFWDLEKFQVVSCI 227 Query: 699 IGHTGYLNTVTVSPDGSLCASGGKD 773 G G + +V +PDG SG +D Sbjct: 228 EGEPGPVRSVLFNPDGCCLYSGCQD 252 Score = 83.6 bits (205), Expect = 4e-16 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 3/215 (1%) Frame = +3 Query: 318 HSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 494 H+ VS +V+ + G+ +G D + LW + GHT V SV ++ I Sbjct: 19 HASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELI 78 Query: 495 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 674 V+GS+ +I++W+ L K H + + F P + S D +K+W++ Sbjct: 79 VAGSQSGSIRVWD-LEAAKILRTLMGHKANICSLDFHPYGE--FVASGSQDTNIKLWDIR 135 Query: 675 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL 851 + GH+ + + SPDG AS D LWDL GK + G +N + Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195 Query: 852 CFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQE 953 F PN Y L + + +I+ WDLE +V ++ E Sbjct: 196 EFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGE 230 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,520,842 Number of Sequences: 45328 Number of extensions: 1523344 Number of successful extensions: 7626 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4525 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6342 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5038342749 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)