BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-005826
(1810 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,618,599
Number of Sequences: 1040
Number of extensions: 41729
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 434,620
effective HSP length: 82
effective length of database: 349,340
effective search space used: 181656800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-005826
(1810 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991371.1| similar to lysosomal associated protein transme... 377 e-104
Alignment gi|XP_602449.2| PREDICTED: similar to lysosomal-associated prot... 262 8e-70
Alignment gi|NP_991368.1| lysosomal-associated protein transmembrane 4 al... 179 6e-45
>ref|NP_991371.1| similar to lysosomal associated protein transmembrane 4 beta [Bos
taurus]
Length = 226
Score = 377 bits (968), Expect = e-104
Identities = 178/226 (78%), Positives = 185/226 (81%)
Frame = +3
Query: 237 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSEL 416
MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWY DPD YHFSSSEL
Sbjct: 1 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSSEL 60
Query: 417 GGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 596
GGDFEFMDDAN TYGAYKQ AAWIIPFFCYQIFDFALNTLVA+
Sbjct: 61 GGDFEFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAV 120
Query: 597 TILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCY 776
T+LVYPNSIQEYIRQLPP+FPYKDDIM+VNPTCLVLIILLFISI+L FKGYLISCVWNCY
Sbjct: 121 TVLVYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCY 180
Query: 777 RYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
RYINGRNSSDVLVYVTSND+TVLLPPYD+A N A KEPPPPYVSA
Sbjct: 181 RYINGRNSSDVLVYVTSNDSTVLLPPYDDATVNSATKEPPPPYVSA 226
>ref|XP_602449.2| PREDICTED: similar to lysosomal-associated protein transmembrane 4B
(predicted) [Bos taurus]
Length = 185
Score = 262 bits (669), Expect = 8e-70
Identities = 127/177 (71%), Positives = 133/177 (75%)
Frame = +3
Query: 309 TILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXX 488
TILLGVWY DP YHFS SEL GDFEFMDDAN
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFSRSELRGDFEFMDDANMCIAIVISFLMIL 67
Query: 489 XXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKD 668
TYGAYKQHAAWIIPFFCY+IFDFALNTLV +TILVYPNSIQEY RQLPP+ PYKD
Sbjct: 68 ICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPDIPYKD 127
Query: 669 DIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTT 839
DIM+VNPTCLVL+ILLFISI+L FKGYLISCVWNCYRY GRNSSDVLVYVTSNDTT
Sbjct: 128 DIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVYVTSNDTT 184
>ref|NP_991368.1| lysosomal-associated protein transmembrane 4 alpha [Bos taurus]
Length = 233
Score = 179 bits (454), Expect = 6e-45
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA 233
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,685,012
Number of Sequences: 33508
Number of extensions: 1613918
Number of successful extensions: 6402
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6392
length of database: 16,112,626
effective HSP length: 107
effective length of database: 12,527,270
effective search space used: 6200998650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-005826
(1810 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 386 e-107
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 179 8e-45
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris]
Length = 393
Score = 386 bits (991), Expect = e-107
Identities = 184/238 (77%), Positives = 192/238 (80%)
Frame = +3
Query: 201 ARAHASGPAVGAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXX 380
AR+ A GAMK VAPW RFYS+SCCLCCHVRTG ILLGVWY
Sbjct: 156 ARSRHGALAAGAMKSVAPWRRFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALA 215
Query: 381 DPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQ 560
DPDQYHFSSSELGGDFEFMDDAN TYGAYKQ AAWIIPFFCYQ
Sbjct: 216 DPDQYHFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQ 275
Query: 561 IFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTF 740
IFDFALNTLVA+T+LVYPNSIQEYIRQLPPNFPY+DDIM+VNPTCLVLIILLFISI+LTF
Sbjct: 276 IFDFALNTLVAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTF 335
Query: 741 KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYD+A NGAAKEPPPPYVSA
Sbjct: 336 KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVSA 393
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris]
Length = 233
Score = 179 bits (454), Expect = 8e-45
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA 233
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,296,407
Number of Sequences: 33732
Number of extensions: 1905477
Number of successful extensions: 7274
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 5589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7260
length of database: 19,266,565
effective HSP length: 109
effective length of database: 15,589,777
effective search space used: 7685760061
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-005826
(1810 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060877.3| lysosomal associated transmembrane protein 4 be... 395 e-110
Alignment gi|NP_055528.1| lysosomal-associated protein transmembrane 4 al... 178 2e-44
>ref|NP_060877.3| lysosomal associated transmembrane protein 4 beta [Homo sapiens]
Length = 317
Score = 395 bits (1014), Expect = e-110
Identities = 190/243 (78%), Positives = 200/243 (82%)
Frame = +3
Query: 186 LLQTWARAHASGPAVGAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXX 365
LL+T ARA A+ P GAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWY
Sbjct: 77 LLKTCARARATAP--GAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLIL 134
Query: 366 XXXXXDPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIP 545
DPDQY+FSSSELGGDFEFMDDAN TYGAYKQ AAWIIP
Sbjct: 135 LSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIP 194
Query: 546 FFCYQIFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFIS 725
FFCYQIFDFALN LVAIT+L+YPNSIQEYIRQLPPNFPY+DD+M+VNPTCLVLIILLFIS
Sbjct: 195 FFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFIS 254
Query: 726 IMLTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPY 905
I+LTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYD+A NGAAKEPPPPY
Sbjct: 255 IILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPY 314
Query: 906 VSA 914
VSA
Sbjct: 315 VSA 317
>ref|NP_055528.1| lysosomal-associated protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 178 bits (451), Expect = 2e-44
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,928,746
Number of Sequences: 39411
Number of extensions: 1898606
Number of successful extensions: 7606
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 5548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7581
length of database: 17,774,539
effective HSP length: 108
effective length of database: 13,518,151
effective search space used: 6677966594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-005826
(1810 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_277056.1| lysosomal-associated protein transmembrane 4B [... 366 e-101
Alignment gi|NP_032666.2| lysosomal-associated protein transmembrane 4A [... 177 3e-44
>ref|NP_277056.1| lysosomal-associated protein transmembrane 4B [Mus musculus]
Length = 227
Score = 366 bits (940), Expect = e-101
Identities = 175/227 (77%), Positives = 185/227 (81%), Gaps = 1/227 (0%)
Frame = +3
Query: 237 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSEL 416
MKMVAPWTRFYS+SCCLCCHVRTGTILLGVWY DP+QYHFS SEL
Sbjct: 1 MKMVAPWTRFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPNQYHFSGSEL 60
Query: 417 GGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 596
GG+FEFMDDAN TYGAYKQHAAWIIPFFCYQIFDFALNTLVAI
Sbjct: 61 GGEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 120
Query: 597 TILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCY 776
T+LVYPNSIQEYIRQLPP+FPY+DDIM+VNPTCLVLIILLFI I+LT KGYLISCVW+CY
Sbjct: 121 TVLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCY 180
Query: 777 RYINGRNSSDVLVYVTSNDTTVLLPPYDEAPA-NGAAKEPPPPYVSA 914
RYINGRNSSDVLVYVTSNDTTVLLPPYD+A A AKEPPPPYVSA
Sbjct: 181 RYINGRNSSDVLVYVTSNDTTVLLPPYDDATAVPSTAKEPPPPYVSA 227
>ref|NP_032666.2| lysosomal-associated protein transmembrane 4A [Mus musculus]
Length = 308
Score = 177 bits (449), Expect = 3e-44
Identities = 93/229 (40%), Positives = 121/229 (52%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 88 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 147
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 148 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 200
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F + + FK YLI+CVW
Sbjct: 201 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVW 259
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 260 NCYKYINNRNVPEIAVYPAFETPPQYVLPTYEMAVKIPEKEPPPPYLPA 308
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,386,090
Number of Sequences: 45328
Number of extensions: 2155865
Number of successful extensions: 8082
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 6136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8060
length of database: 21,768,885
effective HSP length: 109
effective length of database: 16,828,133
effective search space used: 8296269569
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)