Animal-Genome cDNA 20060611C-005957


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005957
         (1051 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999478.1| thioredoxin [Sus scrofa]                              53   1e-08

>ref|NP_999478.1| thioredoxin [Sus scrofa]
          Length = 105

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 24/87 (27%), Positives = 45/87 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+E L    + L+VV F A W   C  +      L++++  V F++++ +   +V+ +  
Sbjct: 11  FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 70

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPEL 356
           +  +PTF FFK  Q +    GA+  +L
Sbjct: 71  VKCMPTFQFFKKGQKVGEFSGANKEKL 97


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 898,036
Number of Sequences: 1040
Number of extensions: 21772
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 95798500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005957
         (1051 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030273.1| thioredoxin-like [Bos taurus]                     593   e-170
Alignment   gi|XP_873370.1| PREDICTED: similar to Thioredoxin-like protein ...   234   6e-62
Alignment   gi|XP_582303.1| PREDICTED: similar to CG14407-PA [Bos taurus]        100   3e-21
Alignment   gi|NP_776393.1| thioredoxin [Bos taurus]                              52   6e-07
Alignment   gi|XP_586040.2| PREDICTED: similar to Thioredoxin-like protein ...    49   5e-06

>ref|NP_001030273.1| thioredoxin-like [Bos taurus]
          Length = 334

 Score =  593 bits (1528), Expect = e-170
 Identities = 295/315 (93%), Positives = 299/315 (94%)
 Frame = +3

Query: 93   QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
            QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEH QVSFVKLEAEAVPEVSEKY
Sbjct: 20   QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKY 79

Query: 273  GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
             ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA          EH KEDLSLRLKKL
Sbjct: 80   EISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKEDLSLRLKKL 139

Query: 453  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 632
            THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYS+WPTY
Sbjct: 140  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSSWPTY 199

Query: 633  PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 812
            PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK
Sbjct: 200  PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 259

Query: 813  CGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGSLDIVKE 992
            CGFSRQILEILNSTG++YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELVG LDIVKE
Sbjct: 260  CGFSRQILEILNSTGIEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE 319

Query: 993  LKKNGELLPILKGEN 1037
            LK+NGELLPILKGEN
Sbjct: 320  LKENGELLPILKGEN 334


>ref|XP_873370.1| PREDICTED: similar to Thioredoxin-like protein 2 (PKC-interacting
            cousin of thioredoxin) (PKC-theta-interacting protein)
            (PKCq-interacting protein) (HUSSY-22) [Bos taurus]
          Length = 164

 Score =  234 bits (598), Expect = 6e-62
 Identities = 134/231 (58%), Positives = 141/231 (61%)
 Frame = +3

Query: 345  APELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQ 524
            APEL+KKVQ+HA          EHLKEDL+  LKKL  AAPC+LFMKGTPQEPRCGF+  
Sbjct: 2    APELSKKVQQHASGGSFSPSGSEHLKEDLNQPLKKLFLAAPCILFMKGTPQEPRCGFN-- 59

Query: 525  MVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGGLDIIKELEASKE 704
                                 EVRQ LKTYSNWPTYPQLYVSGELIGGLDIIKELEASKE
Sbjct: 60   ---------------------EVRQALKTYSNWPTYPQLYVSGELIGGLDIIKELEASKE 98

Query: 705  LDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGVDYETFDIL 884
            LD ICPKAPKLEERLK                                            
Sbjct: 99   LDMICPKAPKLEERLK-------------------------------------------- 114

Query: 885  EDEEVRQGLKTYSNWPTYPQLYVKGELVGSLDIVKELKKNGELLPILKGEN 1037
             DEEV+QGLK YSNW TYPQL VKGELV  LDIVKE K+NGELLPILKGEN
Sbjct: 115  -DEEVQQGLKAYSNWLTYPQLNVKGELVRGLDIVKERKENGELLPILKGEN 164


>ref|XP_582303.1| PREDICTED: similar to CG14407-PA [Bos taurus]
          Length = 158

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
 Frame = +3

Query: 741  ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 917
            E L  L  K  V++F+KG  ++ +CGFS  +++IL   GV DY  +++L+D ++RQG+K 
Sbjct: 44   EHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKD 103

Query: 918  YSNWPTYPQLYVKGELVGSLDIVKELKKNGELLPILK 1028
            YSNWPT PQ+Y+ GE VG  DI+ ++ +NG+L+  LK
Sbjct: 104  YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 140



 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 38/93 (40%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = +3

Query: 432 SLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLK 608
           S  L  L      ++F+KGTP++P+CGFS  +V+IL  H ++ ++++++  D ++RQG+K
Sbjct: 43  SEHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIK 102

Query: 609 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 707
            YSNWPT PQ+Y++GE +GG DI+ ++  + +L
Sbjct: 103 DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 135


>ref|NP_776393.1| thioredoxin [Bos taurus]
          Length = 105

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 24/87 (27%), Positives = 45/87 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+E L    + L+VV F A W   C  +      L++++  V F++++ +   +V+ +  
Sbjct: 11  FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECE 70

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPEL 356
           +  +PTF FFK  Q +    GA+  +L
Sbjct: 71  VKCMPTFQFFKKGQKVGEFSGANKEKL 97


>ref|XP_586040.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
           thioredoxin-related protein) [Bos taurus]
          Length = 467

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 21/70 (30%), Positives = 40/70 (57%)
 Frame = +3

Query: 168 CAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHA 347
           C ++    + ++ ++PQ  F++++       +    IS+ PTFLFF+N   ID+  GA A
Sbjct: 215 CLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADA 274

Query: 348 PELTKKVQRH 377
             L +K+++H
Sbjct: 275 VGLEEKIKQH 284


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,410,318
Number of Sequences: 33508
Number of extensions: 825519
Number of successful extensions: 2817
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 2467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 16,112,626
effective HSP length: 102
effective length of database: 12,694,810
effective search space used: 3135618070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005957
         (1051 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei...   587   e-168
Alignment   gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ...    52   1e-06
Alignment   gi|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein ...    49   6e-06

>ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting
            cousin of thioredoxin) (PKCq-interacting protein)
            (PKC-theta-interacting protein) [Canis familiaris]
          Length = 333

 Score =  587 bits (1512), Expect = e-168
 Identities = 291/315 (92%), Positives = 296/315 (93%)
 Frame = +3

Query: 93   QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
            QFEELLRLRAKSL+VVHFWAPWAPQC QMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY
Sbjct: 19   QFEELLRLRAKSLVVVHFWAPWAPQCVQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 78

Query: 273  GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
             ISSVPTFL FKNSQ IDRLDGAHAPELTKKVQRHA          EH KEDL +RLKKL
Sbjct: 79   EISSVPTFLLFKNSQKIDRLDGAHAPELTKKVQRHASSGSFPPSTNEHPKEDLHVRLKKL 138

Query: 453  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 632
            THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY
Sbjct: 139  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 198

Query: 633  PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 812
            PQLYVSGELIGGLDIIKELEAS ELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK
Sbjct: 199  PQLYVSGELIGGLDIIKELEASDELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 258

Query: 813  CGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGSLDIVKE 992
            CGFS+QILEILNSTGV+YETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVG LDIVKE
Sbjct: 259  CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGGLDIVKE 318

Query: 993  LKKNGELLPILKGEN 1037
            LK NGELLP+LKGEN
Sbjct: 319  LKDNGELLPVLKGEN 333


>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
           (Surface associated sulphydryl protein) (SASP) [Canis
           familiaris]
          Length = 219

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+E L      L+VV F A W   C  +      L++++  V F++++ +   +V+ +  
Sbjct: 125 FQEALNSAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 184

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPEL 356
           +  +PTF FFK  Q +    GA+  +L
Sbjct: 185 VKCMPTFQFFKKGQKVGEFSGANKEKL 211


>ref|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
           thioredoxin-related protein) [Canis familiaris]
          Length = 267

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 21/70 (30%), Positives = 40/70 (57%)
 Frame = +3

Query: 168 CAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHA 347
           C ++    + ++ ++PQ  F++++       +    IS+ PTFLFF+N   ID+  GA A
Sbjct: 12  CLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADA 71

Query: 348 PELTKKVQRH 377
             L +K+++H
Sbjct: 72  VGLEEKIKQH 81


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,316,481
Number of Sequences: 33732
Number of extensions: 975096
Number of successful extensions: 3220
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3209
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 3860817065
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005957
         (1051 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006532.2| thioredoxin-like [Homo sapiens]                      581   e-166
Alignment   gi|NP_057501.2| glutaredoxin 5 [Homo sapiens]                        101   1e-21
Alignment   gi|XP_947255.1| PREDICTED: similar to Thioredoxin domain-contai...    53   5e-07
Alignment   gi|XP_950856.1| PREDICTED: similar to thioredoxin domain-contai...    53   5e-07
Alignment   gi|XP_950855.1| PREDICTED: similar to thioredoxin domain-contai...    53   5e-07
Alignment   gi|NP_115619.4| thioredoxin domain-containing 2 [Homo sapiens]        53   5e-07
Alignment   gi|NP_004777.1| thioredoxin-like 1 [Homo sapiens]                     52   8e-07
Alignment   gi|NP_003320.2| thioredoxin [Homo sapiens]                            52   1e-06
Alignment   gi|NP_006840.2| protein disulfide isomerase-associated 2 [Homo ...    49   9e-06

>ref|NP_006532.2| thioredoxin-like [Homo sapiens]
          Length = 335

 Score =  581 bits (1498), Expect = e-166
 Identities = 288/315 (91%), Positives = 298/315 (94%)
 Frame = +3

Query: 93   QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
            QFEELLRL+AKSLLVVHFWAPWAPQCAQMN+VMAELAKE PQVSFVKLEAE VPEVSEKY
Sbjct: 21   QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKY 80

Query: 273  GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
             ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA          EHLKEDL+LRLKKL
Sbjct: 81   EISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKEDLNLRLKKL 140

Query: 453  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 632
            THAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK YS+WPTY
Sbjct: 141  THAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTY 200

Query: 633  PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 812
            PQLYVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK
Sbjct: 201  PQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 260

Query: 813  CGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGSLDIVKE 992
            CGFS+QILEILNSTGV+YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELVG LDIVKE
Sbjct: 261  CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE 320

Query: 993  LKKNGELLPILKGEN 1037
            LK+NGELLPIL+GEN
Sbjct: 321  LKENGELLPILRGEN 335


>ref|NP_057501.2| glutaredoxin 5 [Homo sapiens]
          Length = 157

 Score =  101 bits (251), Expect = 1e-21
 Identities = 45/97 (46%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
 Frame = +3

Query: 741  ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 917
            E+L  L  K  V++F+KG  ++ +CGFS  +++IL   GV DY  +++L+D E+RQG+K 
Sbjct: 43   EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 102

Query: 918  YSNWPTYPQLYVKGELVGSLDIVKELKKNGELLPILK 1028
            YSNWPT PQ+Y+ GE VG  DI+ ++ +NG+L+  LK
Sbjct: 103  YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 139



 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 38/91 (41%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = +3

Query: 438 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 614
           +L  L      ++F+KGTP++P+CGFS  +V+IL  H ++ ++++++  D E+RQG+K Y
Sbjct: 44  QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 103

Query: 615 SNWPTYPQLYVSGELIGGLDIIKELEASKEL 707
           SNWPT PQ+Y++GE +GG DI+ ++  + +L
Sbjct: 104 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 134


>ref|XP_947255.1| PREDICTED: similar to Thioredoxin domain-containing protein 2
           (Spermatid-specific thioredoxin-1) (Sptrx-1) isoform 1
           [Homo sapiens]
          Length = 538

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           FE  L+   + L+ V F A W   C  +      L+ +H  V F++++A+   EV  +  
Sbjct: 444 FEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECA 503

Query: 276 ISSVPTFLFFKNSQSIDRLDGA 341
           I  VPTF F+K  + +D L GA
Sbjct: 504 IMCVPTFQFYKKEEKVDELCGA 525


>ref|XP_950856.1| PREDICTED: similar to thioredoxin domain-containing 2 isoform 3
           [Homo sapiens]
          Length = 471

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           FE  L+   + L+ V F A W   C  +      L+ +H  V F++++A+   EV  +  
Sbjct: 377 FEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECA 436

Query: 276 ISSVPTFLFFKNSQSIDRLDGA 341
           I  VPTF F+K  + +D L GA
Sbjct: 437 IMCVPTFQFYKKEEKVDELCGA 458


>ref|XP_950855.1| PREDICTED: similar to thioredoxin domain-containing 2 isoform 2
           [Homo sapiens]
          Length = 471

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           FE  L+   + L+ V F A W   C  +      L+ +H  V F++++A+   EV  +  
Sbjct: 377 FEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECA 436

Query: 276 ISSVPTFLFFKNSQSIDRLDGA 341
           I  VPTF F+K  + +D L GA
Sbjct: 437 IMCVPTFQFYKKEEKVDELCGA 458


>ref|NP_115619.4| thioredoxin domain-containing 2 [Homo sapiens]
          Length = 486

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           FE  L+   + L+ V F A W   C  +      L+ +H  V F++++A+   EV  +  
Sbjct: 392 FEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECA 451

Query: 276 ISSVPTFLFFKNSQSIDRLDGA 341
           I  VPTF F+K  + +D L GA
Sbjct: 452 IMCVPTFQFYKKEEKVDELCGA 473


>ref|NP_004777.1| thioredoxin-like 1 [Homo sapiens]
          Length = 289

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+  L      L VV F       C ++    + ++ ++PQ  F++++       +    
Sbjct: 13  FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN 72

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 377
           IS+ PTFLFF+N   ID+  GA A  L +K+++H
Sbjct: 73  ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106


>ref|NP_003320.2| thioredoxin [Homo sapiens]
          Length = 105

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+E L      L+VV F A W   C  +      L++++  V F++++ +   +V+ +  
Sbjct: 11  FQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE 70

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPEL 356
           +  +PTF FFK  Q +    GA+  +L
Sbjct: 71  VKCMPTFQFFKKGQKVGEFSGANKEKL 97


>ref|NP_006840.2| protein disulfide isomerase-associated 2 [Homo sapiens]
          Length = 525

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +3

Query: 108 LRLRAKSLLVVHFWAPWAPQCAQM----NDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           L LR    L+V F+APW   C  +    +   A LA E   V+  K++  A  E++E++G
Sbjct: 54  LALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFG 113

Query: 276 ISSVPTFLFFKN 311
           ++  PT  FF+N
Sbjct: 114 VTEYPTLKFFRN 125


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,786,219
Number of Sequences: 39411
Number of extensions: 957993
Number of successful extensions: 3177
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 2672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3162
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3373940676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-005957
         (1051 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075629.2| thioredoxin-like 2 [Mus musculus]                    585   e-167
Alignment   gi|XP_995522.1| PREDICTED: similar to thioredoxin-like 2 [Mus m...   205   6e-53
Alignment   gi|XP_978406.1| PREDICTED: similar to thioredoxin-like 2 [Mus m...   205   6e-53
Alignment   gi|XP_978323.1| PREDICTED: similar to thioredoxin-like 2 [Mus m...   205   6e-53
Alignment   gi|NP_082695.1| glutaredoxin 5 [Mus musculus]                        101   1e-21
Alignment   gi|NP_705739.1| thioredoxin domain containing 2 (spermatozoa) [...    56   7e-08
Alignment   gi|NP_058072.2| thioredoxin-like 1 [Mus musculus]                     52   1e-06
Alignment   gi|NP_035790.1| thioredoxin 1 [Mus musculus]                          51   2e-06

>ref|NP_075629.2| thioredoxin-like 2 [Mus musculus]
          Length = 337

 Score =  585 bits (1507), Expect = e-167
 Identities = 288/315 (91%), Positives = 297/315 (94%)
 Frame = +3

Query: 93   QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
            QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEAVPEVSEKY
Sbjct: 23   QFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKY 82

Query: 273  GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
             ISSVPTFLFFKNSQ +DRLDGAHAPELTKKVQRH           EHLKEDLSLRLKKL
Sbjct: 83   EISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNEHLKEDLSLRLKKL 142

Query: 453  THAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 632
            THAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLKTYSNWPTY
Sbjct: 143  THAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTY 202

Query: 633  PQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 812
            PQLYVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK
Sbjct: 203  PQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAK 262

Query: 813  CGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGSLDIVKE 992
            CGFS+QILEILNSTGV+YETFDILEDEEVRQGLKT+SNWPTYPQLYV+G+LVG LDIVKE
Sbjct: 263  CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKE 322

Query: 993  LKKNGELLPILKGEN 1037
            LK NGELLPILKGEN
Sbjct: 323  LKDNGELLPILKGEN 337


>ref|XP_995522.1| PREDICTED: similar to thioredoxin-like 2 [Mus musculus]
          Length = 365

 Score =  205 bits (522), Expect = 6e-53
 Identities = 120/205 (58%), Positives = 138/205 (67%)
 Frame = +1

Query: 421  KKTSAFA*RS*PTLPPACCS*REHPRSRAAVSASRWWKFLTNIISSLAVLISSQMKKFAK 600
            KKTSAFA +S  TLPPACCS REH ++RA VSASRWWK  TN I S A LISSQMKKF +
Sbjct: 160  KKTSAFAXKSXLTLPPACCSXREHLKNRAVVSASRWWKSFTNTIFSSAALISSQMKKFDR 219

Query: 601  ASKPIPIGPPTPSSMFLESS*EDLI*SRS*KHLKN*IQFAPKLPN*RKGSKY*QIKLL*C 780
             SK   IGPP  SSMFLES  EDL   RS KH K+  +  PK P+ RKGSK   IKL  C
Sbjct: 220  GSKRTLIGPPILSSMFLESXXEDLTXLRSWKHQKSWTRSVPKHPSXRKGSKCXPIKLRXC 279

Query: 781  SL*RETNRKPSVVSADKSWKF*IVLVSTTRRSTYWRMRKSGRG*KPTPTGRRTLSCM*KG 960
            SL +ETNRK +V SA+K WK+ IVL    +   YW+M+K  R  K +  G+ TLSCM +G
Sbjct: 280  SLXKETNRKQNVDSANKFWKYXIVLGLNMKLLIYWKMKKCVRDXKRSQIGQPTLSCMXEG 339

Query: 961  SWSEAWILLRN*KKTVSCCLS*KEK 1035
               E WIL RN K TV+CCL  KEK
Sbjct: 340  ILLEDWILSRNXKTTVNCCLYXKEK 364



 Score =  182 bits (461), Expect = 7e-46
 Identities = 91/125 (72%), Positives = 96/125 (76%)
 Frame = +3

Query: 93  QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
           QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEAVPEVSEKY
Sbjct: 51  QFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKY 110

Query: 273 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
            ISSVP+FLFFKNSQ +DRLDGAHAPELTKKVQRH             LK+  +   K  
Sbjct: 111 EISSVPSFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFRLVLMNILKKTSAFAXKSX 170

Query: 453 THAAP 467
               P
Sbjct: 171 LTLPP 175


>ref|XP_978406.1| PREDICTED: similar to thioredoxin-like 2 [Mus musculus]
          Length = 365

 Score =  205 bits (522), Expect = 6e-53
 Identities = 120/205 (58%), Positives = 138/205 (67%)
 Frame = +1

Query: 421  KKTSAFA*RS*PTLPPACCS*REHPRSRAAVSASRWWKFLTNIISSLAVLISSQMKKFAK 600
            KKTSAFA +S  TLPPACCS REH ++RA VSASRWWK  TN I S A LISSQMKKF +
Sbjct: 160  KKTSAFAXKSXLTLPPACCSXREHLKNRAVVSASRWWKSFTNTIFSSAALISSQMKKFDR 219

Query: 601  ASKPIPIGPPTPSSMFLESS*EDLI*SRS*KHLKN*IQFAPKLPN*RKGSKY*QIKLL*C 780
             SK   IGPP  SSMFLES  EDL   RS KH K+  +  PK P+ RKGSK   IKL  C
Sbjct: 220  GSKRTLIGPPILSSMFLESXXEDLTXLRSWKHQKSWTRSVPKHPSXRKGSKCXPIKLRXC 279

Query: 781  SL*RETNRKPSVVSADKSWKF*IVLVSTTRRSTYWRMRKSGRG*KPTPTGRRTLSCM*KG 960
            SL +ETNRK +V SA+K WK+ IVL    +   YW+M+K  R  K +  G+ TLSCM +G
Sbjct: 280  SLXKETNRKQNVDSANKFWKYXIVLGLNMKLLIYWKMKKCVRDXKRSQIGQPTLSCMXEG 339

Query: 961  SWSEAWILLRN*KKTVSCCLS*KEK 1035
               E WIL RN K TV+CCL  KEK
Sbjct: 340  ILLEDWILSRNXKTTVNCCLYXKEK 364



 Score =  182 bits (461), Expect = 7e-46
 Identities = 91/125 (72%), Positives = 96/125 (76%)
 Frame = +3

Query: 93  QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
           QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEAVPEVSEKY
Sbjct: 51  QFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKY 110

Query: 273 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
            ISSVP+FLFFKNSQ +DRLDGAHAPELTKKVQRH             LK+  +   K  
Sbjct: 111 EISSVPSFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFRLVLMNILKKTSAFAXKSX 170

Query: 453 THAAP 467
               P
Sbjct: 171 LTLPP 175


>ref|XP_978323.1| PREDICTED: similar to thioredoxin-like 2 [Mus musculus]
          Length = 365

 Score =  205 bits (522), Expect = 6e-53
 Identities = 120/205 (58%), Positives = 138/205 (67%)
 Frame = +1

Query: 421  KKTSAFA*RS*PTLPPACCS*REHPRSRAAVSASRWWKFLTNIISSLAVLISSQMKKFAK 600
            KKTSAFA +S  TLPPACCS REH ++RA VSASRWWK  TN I S A LISSQMKKF +
Sbjct: 160  KKTSAFAXKSXLTLPPACCSXREHLKNRAVVSASRWWKSFTNTIFSSAALISSQMKKFDR 219

Query: 601  ASKPIPIGPPTPSSMFLESS*EDLI*SRS*KHLKN*IQFAPKLPN*RKGSKY*QIKLL*C 780
             SK   IGPP  SSMFLES  EDL   RS KH K+  +  PK P+ RKGSK   IKL  C
Sbjct: 220  GSKRTLIGPPILSSMFLESXXEDLTXLRSWKHQKSWTRSVPKHPSXRKGSKCXPIKLRXC 279

Query: 781  SL*RETNRKPSVVSADKSWKF*IVLVSTTRRSTYWRMRKSGRG*KPTPTGRRTLSCM*KG 960
            SL +ETNRK +V SA+K WK+ IVL    +   YW+M+K  R  K +  G+ TLSCM +G
Sbjct: 280  SLXKETNRKQNVDSANKFWKYXIVLGLNMKLLIYWKMKKCVRDXKRSQIGQPTLSCMXEG 339

Query: 961  SWSEAWILLRN*KKTVSCCLS*KEK 1035
               E WIL RN K TV+CCL  KEK
Sbjct: 340  ILLEDWILSRNXKTTVNCCLYXKEK 364



 Score =  182 bits (461), Expect = 7e-46
 Identities = 91/125 (72%), Positives = 96/125 (76%)
 Frame = +3

Query: 93  QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
           QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEAVPEVSEKY
Sbjct: 51  QFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKY 110

Query: 273 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKL 452
            ISSVP+FLFFKNSQ +DRLDGAHAPELTKKVQRH             LK+  +   K  
Sbjct: 111 EISSVPSFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFRLVLMNILKKTSAFAXKSX 170

Query: 453 THAAP 467
               P
Sbjct: 171 LTLPP 175


>ref|NP_082695.1| glutaredoxin 5 [Mus musculus]
          Length = 152

 Score =  101 bits (251), Expect = 1e-21
 Identities = 45/97 (46%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
 Frame = +3

Query: 741  ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 917
            E+L  L  K  V++F+KG  ++ +CGFS  +++IL   GV DY  +++L+D E+RQG+K 
Sbjct: 39   EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 98

Query: 918  YSNWPTYPQLYVKGELVGSLDIVKELKKNGELLPILK 1028
            YSNWPT PQ+Y+ GE VG  DI+ ++ +NG+L+  LK
Sbjct: 99   YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 135



 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 38/91 (41%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
 Frame = +3

Query: 438 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 614
           +L  L      ++F+KGTP++P+CGFS  +V+IL  H ++ ++++++  D E+RQG+K Y
Sbjct: 40  QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 99

Query: 615 SNWPTYPQLYVSGELIGGLDIIKELEASKEL 707
           SNWPT PQ+Y++GE +GG DI+ ++  + +L
Sbjct: 100 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 130


>ref|NP_705739.1| thioredoxin domain containing 2 (spermatozoa) [Mus musculus]
          Length = 462

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 26/92 (28%), Positives = 48/92 (52%)
 Frame = +3

Query: 93  QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 272
           +FEE+L+   + L+ V F A W   C  M  +   L+ +H  V F++++ E   ++ +  
Sbjct: 367 EFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDC 426

Query: 273 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKV 368
            I  +PTF F+KN + +    GA   +L + +
Sbjct: 427 EIFHLPTFQFYKNEEKVGEFSGALVGKLERSI 458


>ref|NP_058072.2| thioredoxin-like 1 [Mus musculus]
          Length = 289

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+  L      L VV F       C ++    + ++ ++PQ  F++++       +    
Sbjct: 13  FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN 72

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 377
           IS+ PTFLFF+N   ID+  GA A  L +K+++H
Sbjct: 73  ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106


>ref|NP_035790.1| thioredoxin 1 [Mus musculus]
          Length = 105

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = +3

Query: 96  FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 275
           F+E L      L+VV F A W   C  +      L  ++  V F++++ +   +V+    
Sbjct: 11  FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70

Query: 276 ISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHA 380
           +  +PTF F+K  Q +    GA+  +L   +  +A
Sbjct: 71  VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,857,138
Number of Sequences: 45328
Number of extensions: 1103973
Number of successful extensions: 3769
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 3263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3749
length of database: 21,768,885
effective HSP length: 104
effective length of database: 17,054,773
effective search space used: 4178419385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)