BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-006709 (1311 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,069,509 Number of Sequences: 1040 Number of extensions: 27003 Number of successful extensions: 137 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 125828220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-006709 (1311 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_583503.2| PREDICTED: similar to DNA replication licensing... 560 e-172 Alignment gi|XP_580477.2| PREDICTED: similar to minichromosome maintenanc... 74 2e-13 Alignment gi|XP_878074.1| PREDICTED: similar to minichromosome maintenanc... 72 1e-12 Alignment gi|XP_869445.1| PREDICTED: similar to minichromosome maintenanc... 67 2e-11 Alignment gi|XP_877890.1| PREDICTED: similar to minichromosome maintenanc... 67 4e-11 Alignment gi|NP_001013604.1| minichromosome maintenance deficient (S. cer... 64 3e-10 Alignment gi|XP_587221.2| PREDICTED: similar to minichromosome maintenanc... 63 6e-10 Alignment gi|XP_877686.1| PREDICTED: similar to minichromosome maintenanc... 63 6e-10 Alignment gi|XP_584574.2| PREDICTED: similar to minichromosome maintenanc... 52 8e-07 Alignment gi|XP_879437.1| PREDICTED: similar to minichromosome maintenanc... 52 8e-07 >ref|XP_583503.2| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46 homolog) (P1-CDC46) [Bos taurus] Length = 734 Score = 560 bits (1442), Expect(2) = e-172 Identities = 272/276 (98%), Positives = 274/276 (99%) Frame = +1 Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK Sbjct: 1 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60 Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735 RHYNLGEYWIEVEMEDLASFDE+LADYLYKQPAEHLQLLEEAAKEVADEVTRPRP GDEV Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEELADYLYKQPAEHLQLLEEAAKEVADEVTRPRPAGDEV 120 Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSC +TLT Sbjct: 121 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCHSTLT 180 Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE Sbjct: 181 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240 Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL Sbjct: 241 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276 Score = 64.7 bits (156), Expect(2) = e-172 Identities = 31/34 (91%), Positives = 33/34 (97%) Frame = +3 Query: 1209 HRGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310 +RGRDRVGVGIRSAYIRVLG QVDTDGSGR+FAG Sbjct: 279 NRGRDRVGVGIRSAYIRVLGIQVDTDGSGRTFAG 312 >ref|XP_580477.2| PREDICTED: similar to minichromosome maintenance protein 4 [Bos taurus] Length = 793 Score = 74.3 bits (181), Expect = 2e-13 Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 4/246 (1%) Frame = +1 Query: 457 KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627 K QR + F+ + G Y L+ GE ++ V E + SFD +L Sbjct: 89 KENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLEEINVTGEPFLNVNCEHIKSFDTNL 148 Query: 628 ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804 L P E + + A E+ + D +L+ IQV + ++R+L + Sbjct: 149 YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPE 203 Query: 805 TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984 + L+ I G+VI S + + QC+ C +T R + + +C+T + Sbjct: 204 DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPCVCERCHTSHS- 262 Query: 985 RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164 ++ ++ D Q +KLQE P+ +P G+ P + L+ L DKV PG+RV Sbjct: 263 --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVVLFAHNDLVDKVQPGDRV 314 Query: 1165 TIMGIY 1182 + GIY Sbjct: 315 HVTGIY 320 >ref|XP_878074.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 6 [Bos taurus] Length = 825 Score = 72.0 bits (175), Expect = 1e-12 Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 1/241 (0%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999 + G+V + +GV + + + C C L E P C P+C Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKCGFVLGPFCQSQNQE--VKPGSC-------PECQS 280 Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 P+ + ++C Q+L P P P D PG + + GI Sbjct: 281 AGPFEVNMEECLAAHRQSLTCSNPPPPPPSRWSPSLYAYPVTHIALDASCPGAEIELTGI 340 Query: 1180 Y 1182 Y Sbjct: 341 Y 341 >ref|XP_869445.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 3 [Bos taurus] Length = 831 Score = 67.4 bits (163), Expect = 2e-11 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 7/247 (2%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999 + G+V + +GV + + + C C L E P C P+C Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKCGFVLGPFCQSQNQE--VKPGSC-------PECQS 280 Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVP------HGEMPRHMQLYCDRYLCDKVVPGNR 1161 P+ + ++C Q+L P P PR + YL D+ Sbjct: 281 AGPFEVNMEECLAAHRQSLTFSRGPVRCPGRVCVTGSSSPRGGRCCRRSYLSDECPGPRE 340 Query: 1162 VTIMGIY 1182 + + GIY Sbjct: 341 LELTGIY 347 >ref|XP_877890.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 5 [Bos taurus] Length = 831 Score = 66.6 bits (161), Expect = 4e-11 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 4/237 (1%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNT-DQAGRP-KC 996 + G+V + +GV + + + C C G+ L C + +Q +P C Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKC--------------GFVLGPFCQSQNQEVKPGSC 275 Query: 997 PLDPYFIMPDKCKCVDFQTLKLQEL--PDAVPHGEMPRHMQLYCDRYLCDKVVPGNR 1161 P +C+ + ++E+ P P +P + L C Y +++P +R Sbjct: 276 P---------ECQSAGPFEVNMEEVKPPTPAPISMVPLPLCLPCHTYCSGRLLPRSR 323 >ref|NP_001013604.1| minichromosome maintenance deficient (S. cerevisiae) 3 [Bos taurus] Length = 435 Score = 63.5 bits (153), Expect = 3e-10 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Frame = +1 Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717 Y+ +++ + +Y + V + DL +E A+ L E L + A K+ + Sbjct: 32 YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRALKDFVASIDA-- 89 Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891 T + ++ + L+ + R+L S +S +V + GIV S VR K R C Sbjct: 90 -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148 Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050 + + T LT++ P Y P K + + L Y D Q Sbjct: 149 PATKKTIERRYSDLTSLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197 Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 + +QE+P+ P G++PR + + D L D+V PG+RV ++G Y Sbjct: 198 IITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVQVVGTY 241 >ref|XP_587221.2| PREDICTED: similar to minichromosome maintenance protein 2 isoform 1 [Bos taurus] Length = 825 Score = 62.8 bits (151), Expect = 6e-10 Identities = 43/146 (29%), Positives = 69/146 (47%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229 Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900 + G+V + +GV + + + C C Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKC 255 >ref|XP_877686.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 4 [Bos taurus] Length = 834 Score = 62.8 bits (151), Expect = 6e-10 Identities = 43/146 (29%), Positives = 69/146 (47%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229 Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900 + G+V + +GV + + + C C Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKC 255 >ref|XP_584574.2| PREDICTED: similar to minichromosome maintenance protein domain containing 1 isoform 1 [Bos taurus] Length = 441 Score = 52.4 bits (124), Expect = 8e-07 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%) Frame = +1 Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723 LK Y + V L + ++ +Y P E L + + A + A + + +P Sbjct: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88 Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894 G + Q++ + P +R K+ + H + + G VI S V+ C Sbjct: 89 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148 Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065 C++ A + P C + + C + + D +C D+Q +K+Q Sbjct: 149 KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204 Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 E + G +PR MQ+ + L D G+ +TI G+ Sbjct: 205 EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242 >ref|XP_879437.1| PREDICTED: similar to minichromosome maintenance protein domain containing 1 isoform 3 [Bos taurus] Length = 482 Score = 52.4 bits (124), Expect = 8e-07 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%) Frame = +1 Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723 LK Y + V L + ++ +Y P E L + + A + A + + +P Sbjct: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88 Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894 G + Q++ + P +R K+ + H + + G VI S V+ C Sbjct: 89 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148 Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065 C++ A + P C + + C + + D +C D+Q +K+Q Sbjct: 149 KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204 Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 E + G +PR MQ+ + L D G+ +TI G+ Sbjct: 205 EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,330,293 Number of Sequences: 33508 Number of extensions: 1114591 Number of successful extensions: 6275 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6217 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 4192427608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-006709 (1311 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_853134.1| PREDICTED: similar to DNA replication licensing... 282 3e-88 Alignment gi|XP_541736.2| PREDICTED: similar to minichromosome maintenanc... 84 2e-16 Alignment gi|XP_535063.2| PREDICTED: similar to minichromosome maintenanc... 75 1e-13 Alignment gi|XP_538960.2| PREDICTED: similar to DNA replication licensing... 69 1e-11 Alignment gi|XP_536865.2| PREDICTED: similar to DNA replication licensing... 62 1e-09 Alignment gi|XP_859866.1| PREDICTED: similar to DNA replication licensing... 62 1e-09 Alignment gi|XP_859831.1| PREDICTED: similar to DNA replication licensing... 62 1e-09 Alignment gi|XP_849809.1| PREDICTED: similar to DNA replication licensing... 62 1e-09 >ref|XP_853134.1| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46 homolog) (P1-CDC46) [Canis familiaris] Length = 634 Score = 282 bits (721), Expect(2) = 3e-88 Identities = 132/138 (95%), Positives = 137/138 (99%) Frame = +1 Query: 790 SLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCN 969 S++SD MSHLVKIPGI+I+ASGVRAKATRISIQCRSCRNTL+NIAMRPGLEGYALPRKCN Sbjct: 39 SVQSDMMSHLVKIPGIIISASGVRAKATRISIQCRSCRNTLSNIAMRPGLEGYALPRKCN 98 Query: 970 TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 1149 TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV Sbjct: 99 TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 158 Query: 1150 PGNRVTIMGIYSIKKFGL 1203 PGNRVTIMGIYSIKKFGL Sbjct: 159 PGNRVTIMGIYSIKKFGL 176 Score = 63.2 bits (152), Expect(2) = 3e-88 Identities = 30/33 (90%), Positives = 32/33 (96%) Frame = +3 Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310 +GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG Sbjct: 180 KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 212 >ref|XP_541736.2| PREDICTED: similar to minichromosome maintenance protein 2 [Canis familiaris] Length = 1001 Score = 84.3 bits (207), Expect = 2e-16 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 1/241 (0%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + G F + D K + + V EDLA+ + LA +L Sbjct: 292 EIHHRFKNFLRTHVDGHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 347 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 348 EAPAELLQIFDEAALEV---VLAMYPKYDRIASHIHVRISHLPLVEELRSLRQLHLNQLI 404 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999 + G+V + +GV + + + C C L E P C P+C Sbjct: 405 RTSGVVTSCTGVLPQLSMVKYNCNKCSFVLGPFCQSQNQE--VKPGSC-------PECQS 455 Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 P+ + ++ ++Q +++QE P V G +PR L D PG+ + + GI Sbjct: 456 AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 515 Query: 1180 Y 1182 Y Sbjct: 516 Y 516 >ref|XP_535063.2| PREDICTED: similar to minichromosome maintenance protein 4 [Canis familiaris] Length = 929 Score = 75.5 bits (184), Expect = 1e-13 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 4/246 (1%) Frame = +1 Query: 457 KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627 K QR + F+ + G Y L +GE ++ V E + SFD++L Sbjct: 229 KENFQRFLQHFIDPLAKEEETIGIDITEPLYMQRLGEINVIGEPFLNVNCEHIQSFDKNL 288 Query: 628 ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804 L P E + + A E+ + D +L+ IQV + ++R+L D Sbjct: 289 YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPD 343 Query: 805 TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984 + L+ I G+VI S + + QC+ C +T R + ++ C+T + Sbjct: 344 DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPSVCEHCHTTHS- 402 Query: 985 RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164 ++ ++ D Q +KLQE P+ +P G+ P + L+ L DKV PG+RV Sbjct: 403 --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGDRV 454 Query: 1165 TIMGIY 1182 I GIY Sbjct: 455 NITGIY 460 >ref|XP_538960.2| PREDICTED: similar to DNA replication licensing factor MCM3 (DNA polymerase alpha holoenzyme-associated protein P1) (RLF beta subunit) (P102 protein) (P1-MCM3) [Canis familiaris] Length = 916 Score = 68.9 bits (167), Expect = 1e-11 Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 10/295 (3%) Frame = +1 Query: 328 LVNLWFREAREGRGAVMSGFDDPGIFYSDSFGGDNAADEGQARKSQLQR-RFKEFLRQYR 504 ++ LW+RE A DP GG + G A L +E R Y Sbjct: 73 ILALWWREKSASFRAGAGPCGDP----RRGAGGGGSVAAGMAGTVVLDDVELREAQRDYL 128 Query: 505 VGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAA 684 D Y+ +++ + +Y + V + DL +E A+ L E L + A Sbjct: 129 DFLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRAL 188 Query: 685 KEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGV 858 K+ + T + ++ + L+ + R+L S +S +V + GIV S V Sbjct: 189 KDFVASIDA---TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLV 245 Query: 859 RAKATRISIQCRSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFI 1017 R K R C + + T LT + P Y P K + + L Y Sbjct: 246 RPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY-- 301 Query: 1018 MPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 D QT+ +QE+P+ P G++PR + + D L DKV PG+RV ++G Y Sbjct: 302 -------KDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRVQVVGTY 349 >ref|XP_536865.2| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 1 [Canis familiaris] Length = 733 Score = 62.0 bits (149), Expect = 1e-09 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L +A +E+ + +VL + ++M++ Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S P IR +++D++ LV + GIV S V+ + + C C Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ K + FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277 >ref|XP_859866.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 5 [Canis familiaris] Length = 724 Score = 62.0 bits (149), Expect = 1e-09 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L +A +E+ + +VL + ++M++ Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S P IR +++D++ LV + GIV S V+ + + C C Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ K + FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277 >ref|XP_859831.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 4 [Canis familiaris] Length = 389 Score = 62.0 bits (149), Expect = 1e-09 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L +A +E+ + +VL + ++M++ Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S P IR +++D++ LV + GIV S V+ + + C C Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ K + FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277 >ref|XP_849809.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 3 [Canis familiaris] Length = 719 Score = 62.0 bits (149), Expect = 1e-09 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L +A +E+ + +VL + ++M++ Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S P IR +++D++ LV + GIV S V+ + + C C Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ K + FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,499,840 Number of Sequences: 33732 Number of extensions: 1315286 Number of successful extensions: 7541 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 5431 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7495 length of database: 19,266,565 effective HSP length: 106 effective length of database: 15,690,973 effective search space used: 5178021090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-006709 (1311 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_006730.2| minichromosome maintenance deficient protein 5 ... 554 e-170 Alignment gi|NP_004517.2| minichromosome maintenance protein 2 [Homo sapi... 82 8e-16 Alignment gi|NP_005905.2| minichromosome maintenance protein 4 [Homo sapi... 77 2e-14 Alignment gi|NP_877423.1| minichromosome maintenance protein 4 [Homo sapi... 77 2e-14 Alignment gi|NP_002379.2| minichromosome maintenance protein 3 [Homo sapi... 65 1e-10 Alignment gi|NP_005907.3| minichromosome maintenance protein 7 isoform 1 ... 64 2e-10 Alignment gi|NP_694987.1| minichromosome maintenance protein domain conta... 49 1e-05 >ref|NP_006730.2| minichromosome maintenance deficient protein 5 [Homo sapiens] Length = 734 Score = 554 bits (1427), Expect(2) = e-170 Identities = 269/276 (97%), Positives = 272/276 (98%) Frame = +1 Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555 MSGFDDPGIFYSDSFGGD ADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK Sbjct: 1 MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60 Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRP+G+EV Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEV 120 Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915 LQDIQVMLKSDASPSSIRSLKSD MSHLVKIPGI+IAAS VRAKATRISIQCRSCRNTLT Sbjct: 121 LQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLT 180 Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE Sbjct: 181 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240 Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL Sbjct: 241 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276 Score = 64.3 bits (155), Expect(2) = e-170 Identities = 31/33 (93%), Positives = 32/33 (96%) Frame = +3 Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310 RGRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG Sbjct: 280 RGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 312 >ref|NP_004517.2| minichromosome maintenance protein 2 [Homo sapiens] Length = 904 Score = 82.4 bits (202), Expect = 8e-16 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + F + D K + + V EDLA+ + LA +L Sbjct: 194 EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999 + G+V + +GV + + + C C L E P C P+C Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357 Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 P+ + ++ ++Q +++QE P V G +PR L D PG+ + + GI Sbjct: 358 AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417 Query: 1180 Y 1182 Y Sbjct: 418 Y 418 >ref|NP_005905.2| minichromosome maintenance protein 4 [Homo sapiens] Length = 863 Score = 77.4 bits (189), Expect = 2e-14 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%) Frame = +1 Query: 451 ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621 A K QR + F+ + G Y L +GE ++ V E + SFD+ Sbjct: 161 ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220 Query: 622 DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798 +L L P E + + A E+ + D +L+ IQV + ++R+L Sbjct: 221 NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275 Query: 799 SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978 + + L+ I G+VI S + + QC+ C +T T + M G A P C Sbjct: 276 PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332 Query: 979 AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158 + + DK Q +KLQE P+ +P G+ P + L+ L DKV PG+ Sbjct: 333 TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386 Query: 1159 RVTIMGIY 1182 RV + GIY Sbjct: 387 RVNVTGIY 394 >ref|NP_877423.1| minichromosome maintenance protein 4 [Homo sapiens] Length = 863 Score = 77.4 bits (189), Expect = 2e-14 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%) Frame = +1 Query: 451 ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621 A K QR + F+ + G Y L +GE ++ V E + SFD+ Sbjct: 161 ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220 Query: 622 DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798 +L L P E + + A E+ + D +L+ IQV + ++R+L Sbjct: 221 NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275 Query: 799 SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978 + + L+ I G+VI S + + QC+ C +T T + M G A P C Sbjct: 276 PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332 Query: 979 AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158 + + DK Q +KLQE P+ +P G+ P + L+ L DKV PG+ Sbjct: 333 TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386 Query: 1159 RVTIMGIY 1182 RV + GIY Sbjct: 387 RVNVTGIY 394 >ref|NP_002379.2| minichromosome maintenance protein 3 [Homo sapiens] Length = 808 Score = 65.5 bits (158), Expect = 1e-10 Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Frame = +1 Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717 Y+ +++ + +Y + V + DL +E A+ L E L + A K+ + Sbjct: 32 YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89 Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891 T + ++ V L+ + R+L S +S +V + GIV S VR K R C Sbjct: 90 -TYAKQYEEFYVGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148 Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050 + + T LT + P Y P K + + L Y D Q Sbjct: 149 PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197 Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 T+ +QE+P+ P G++PR + + D L DK PG+RV ++G Y Sbjct: 198 TITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGTY 241 >ref|NP_005907.3| minichromosome maintenance protein 7 isoform 1 [Homo sapiens] Length = 719 Score = 64.3 bits (155), Expect = 2e-10 Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY ++L R + + + V+++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L +A +E+ + +VL + ++M++ Sbjct: 70 ARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVRSPQNQYPAE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S P IR +++D++ LV + GIV S V+ K + C C Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ + + FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSRFIKFQEMKMQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277 >ref|NP_694987.1| minichromosome maintenance protein domain containing 1 [Homo sapiens] Length = 391 Score = 48.9 bits (115), Expect = 1e-05 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 8/218 (3%) Frame = +1 Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723 LK Y + V L + ++ +Y P+E L + + A + A + + +P Sbjct: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPE 88 Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894 + Q++ + P +R K+ + H + + G VI S V+ C Sbjct: 89 AVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 148 Query: 895 SCRNTLTNIAMRPGLEGYALPRKC---NTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQ 1065 C++ A + P C + + + C L P +C+ D+Q +K+Q Sbjct: 149 KCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTC-LSGLSSSPTRCR--DYQEIKIQ 205 Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 E + G +PR M++ + L D G+ +TI GI Sbjct: 206 EQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGI 243 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,338,505 Number of Sequences: 39411 Number of extensions: 1330570 Number of successful extensions: 8355 Number of sequences better than 1.0e-05: 7 Number of HSP's better than 0.0 without gapping: 5522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8315 length of database: 17,774,539 effective HSP length: 105 effective length of database: 13,636,384 effective search space used: 4513643104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-006709 (1311 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_032592.1| minichromosome maintenance deficient 5, cell di... 521 e-160 Alignment gi|NP_032590.1| minichromosome maintenance deficient 2 mitotin ... 82 1e-15 Alignment gi|NP_032591.2| minichromosome maintenance protein 4 [Mus muscu... 67 4e-11 Alignment gi|NP_032589.1| minichromosome maintenance deficient 3 [Mus mus... 67 5e-11 Alignment gi|NP_032594.1| minichromosome maintenance protein 7 [Mus muscu... 62 1e-09 Alignment gi|NP_082106.2| minichromosome maintenance deficient domain con... 52 2e-06 Alignment gi|NP_079952.2| minichromosome maintenance deficient 8 [Mus mus... 50 4e-06 Alignment gi|NP_032593.1| minichromosome maintenance protein 6 [Mus muscu... 50 7e-06 >ref|NP_032592.1| minichromosome maintenance deficient 5, cell division cycle 46 [Mus musculus] Length = 733 Score = 521 bits (1341), Expect(2) = e-160 Identities = 255/276 (92%), Positives = 262/276 (94%) Frame = +1 Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555 MSGFDDPGIFYSDSFGGD A+EGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK Sbjct: 1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60 Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735 RHYNLGEYWIEVEMEDLASFDE+LAD+L+KQPAEHLQLLEEAAKEVADEVTRPRP GDE+ Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDEL 120 Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915 LQDIQVMLKSDASPSSIR LKSD MSHLVKIPGI+I+AS VRAKATRISIQCRSC NTLT Sbjct: 121 LQDIQVMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLT 180 Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095 NIAM P G LPRKCN DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE Sbjct: 181 NIAM-PRPRGLCLPRKCNMDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 239 Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL Sbjct: 240 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 275 Score = 63.2 bits (152), Expect(2) = e-160 Identities = 30/33 (90%), Positives = 32/33 (96%) Frame = +3 Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310 +GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG Sbjct: 279 KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 311 >ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin [Mus musculus] Length = 904 Score = 82.4 bits (202), Expect = 1e-15 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%) Frame = +1 Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642 ++ RFK FLR + F + D K + + V EDLA+ + LA +L Sbjct: 194 EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249 Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822 + PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+ Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306 Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCP- 999 + G+V + +GV + + + C C L E P C P+C Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCSKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357 Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 P+ I ++ ++Q +++QE P V G +PR L D PG+ + + GI Sbjct: 358 AGPFEINMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417 Query: 1180 Y 1182 Y Sbjct: 418 Y 418 >ref|NP_032591.2| minichromosome maintenance protein 4 [Mus musculus] Length = 862 Score = 67.0 bits (162), Expect = 4e-11 Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 1/216 (0%) Frame = +1 Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717 Y +L GE ++ V E + SF ++L L P E + + A E+ + Sbjct: 192 YMQQLGEINITGEPFLNVNCEHIKSFSKNLYRQLISYPQEVIPTFDMAVNEIFFD----- 246 Query: 718 PTGDEVLQ-DIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894 D +L+ IQV + S+R+L + + L+ I G+VI S + + QC+ Sbjct: 247 RYPDSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQ 306 Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELP 1074 +T T + + G A P C + DK Q +KLQE P Sbjct: 307 VSAHT-TRVEIDRGR--IAEPCSCVHCHTTHSMALIHNRSFFSDK------QMIKLQESP 357 Query: 1075 DAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 + +P G+ P + L+ L DKV PG+RV + GIY Sbjct: 358 EDMPAGQTPHTIVLFAHNDLVDKVQPGDRVNVTGIY 393 >ref|NP_032589.1| minichromosome maintenance deficient 3 [Mus musculus] Length = 812 Score = 66.6 bits (161), Expect = 5e-11 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Frame = +1 Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717 Y+++++ + +Y + V + DL +E A+ L E L + A K+ + Sbjct: 32 YQNKVRELISDNQYRLIVSVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89 Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891 T + ++ + L+ + R+L S +S +V + GIV S VR K R C Sbjct: 90 -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148 Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050 + + T LT + P Y P K + + L Y D Q Sbjct: 149 PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197 Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 T+ +QE+P+ P G++PR + + D L DKV PG+R+ ++G Y Sbjct: 198 TITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTY 241 >ref|NP_032594.1| minichromosome maintenance protein 7 [Mus musculus] Length = 719 Score = 62.0 bits (149), Expect = 1e-09 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 36/274 (13%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 + + K+FL+++ + FKY +L + + + V+++D+A D +L D + + Sbjct: 10 KEKVKKFLQEFYYENELGKKQFKYGTQLVHLAHREQVALYVDLDDIAEDDPELVDSICEN 69 Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762 + +L + +E+ E +VL + ++M++ Sbjct: 70 AKRYSRLFGDVVQELLPEYKEKEVVNKDVLDVYIEHRLMMEQRSRDPGAVRNPQNQYPSE 129 Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906 S + P IR +++D++ L+ + GIV S V+ + + C C Sbjct: 130 LMRRFELYFRGPSSSKPRVIREVRADSVGKLLTVRGIVTRVSEVKPRMVVATYTCDQCGA 189 Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080 P + ++C T+++G ++ K V FQ +K+QE D Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFVKFQEMKIQEHSDQ 243 Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182 VP G +PR + + + PG+ V++ GI+ Sbjct: 244 VPVGNIPRSITVVLEGENTRIAQPGDHVSVTGIF 277 >ref|NP_082106.2| minichromosome maintenance deficient domain containing 1 [Mus musculus] Length = 1290 Score = 51.6 bits (122), Expect = 2e-06 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 9/219 (4%) Frame = +1 Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTR--PRPT 723 LK Y + V L + ++ DY P E L + + A + A + + P Sbjct: 185 LKERDEDAHYPVVVNAMSLFETNMEIGDYFTVFPNEVLTVFDSALRRSALAILQSLPETE 244 Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894 G + Q++ + P +R K+ + H + + G VI S V+ C Sbjct: 245 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 304 Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD----KCKCVDFQTLKL 1062 C++ A ++ P C + C + + D +C D+Q +K+ Sbjct: 305 KCKHVFMVEADFEQYYTFSRPSSCPS----LASCDSSKFSCLSDLSSSPARCRDYQEIKI 360 Query: 1063 QELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179 QE + G +PR M++ + L D G+ +TI G+ Sbjct: 361 QEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGV 399 >ref|NP_079952.2| minichromosome maintenance deficient 8 [Mus musculus] Length = 805 Score = 50.4 bits (119), Expect = 4e-06 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Frame = +1 Query: 784 IRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEG-YALPR 960 ++++++ + I G V+ S ++ T ++ QC +C I P +G Y LP Sbjct: 172 LKNIRATCYGKYISIRGTVVRVSNIKPLCTNMAFQCAACGE----IQSFPLPDGKYTLPT 227 Query: 961 KCNTDQA-GRPKCPL--DPYFIMPDKCKCVDFQTLKLQELPDAVPH--GEMPRHMQLYCD 1125 KC GR PL P + +D+Q +K+QEL G +PR ++ Sbjct: 228 KCPVPACRGRSFAPLRSSPLTVT------LDWQLIKIQELMSDAQREAGRIPRTIECELV 281 Query: 1126 RYLCDKVVPGNRVTIMGIYSI 1188 L D VPG+ VT+ GI + Sbjct: 282 HDLVDSCVPGDTVTVTGIVKV 302 >ref|NP_032593.1| minichromosome maintenance protein 6 [Mus musculus] Length = 821 Score = 49.7 bits (117), Expect = 7e-06 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 2/238 (0%) Frame = +1 Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648 Q+ F +FL +++ G+D ++ +EL R + V DL F++ L+ + ++ Sbjct: 27 QKLFLDFLEEFQ-GSDGEIKYLQFAEELIRPER---NTLVVSFADLEQFNQQLSTTIQEE 82 Query: 649 PAEHLQLLEEAAKE-VADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLVK 825 L A K V D P +D V + + IR L S + L + Sbjct: 83 FYRVYPYLCRALKTFVKDRKEIP------FAKDFYVAFQDLPTRHKIRELTSSRIGLLTR 136 Query: 826 IPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLD 1005 I G V+ V + + C C+ + ++ + Y P C P C Sbjct: 137 ISGQVVRTHPVHPELVSGTFLCLDCQTVIKDVEQQ---FKYTQPNICRN-----PVCANR 188 Query: 1006 PYFIMP-DKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMG 1176 F++ +K + VDFQ +++QE +P G +PR +++ + G+R G Sbjct: 189 KRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGDRCDFTG 246 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,806,867 Number of Sequences: 45328 Number of extensions: 1451598 Number of successful extensions: 8164 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 5889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8089 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5598158610 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)