Animal-Genome cDNA 20060611C-006709


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-006709
         (1311 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,069,509
Number of Sequences: 1040
Number of extensions: 27003
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 125828220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-006709
         (1311 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_583503.2| PREDICTED: similar to DNA replication licensing...   560   e-172
Alignment   gi|XP_580477.2| PREDICTED: similar to minichromosome maintenanc...    74   2e-13
Alignment   gi|XP_878074.1| PREDICTED: similar to minichromosome maintenanc...    72   1e-12
Alignment   gi|XP_869445.1| PREDICTED: similar to minichromosome maintenanc...    67   2e-11
Alignment   gi|XP_877890.1| PREDICTED: similar to minichromosome maintenanc...    67   4e-11
Alignment   gi|NP_001013604.1| minichromosome maintenance deficient (S. cer...    64   3e-10
Alignment   gi|XP_587221.2| PREDICTED: similar to minichromosome maintenanc...    63   6e-10
Alignment   gi|XP_877686.1| PREDICTED: similar to minichromosome maintenanc...    63   6e-10
Alignment   gi|XP_584574.2| PREDICTED: similar to minichromosome maintenanc...    52   8e-07
Alignment   gi|XP_879437.1| PREDICTED: similar to minichromosome maintenanc...    52   8e-07

>ref|XP_583503.2| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46
            homolog) (P1-CDC46) [Bos taurus]
          Length = 734

 Score =  560 bits (1442), Expect(2) = e-172
 Identities = 272/276 (98%), Positives = 274/276 (99%)
 Frame = +1

Query: 376  MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
            MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1    MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 556  RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
            RHYNLGEYWIEVEMEDLASFDE+LADYLYKQPAEHLQLLEEAAKEVADEVTRPRP GDEV
Sbjct: 61   RHYNLGEYWIEVEMEDLASFDEELADYLYKQPAEHLQLLEEAAKEVADEVTRPRPAGDEV 120

Query: 736  LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
            LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSC +TLT
Sbjct: 121  LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCHSTLT 180

Query: 916  NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
            NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181  NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240

Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
            MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 241  MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276



 Score = 64.7 bits (156), Expect(2) = e-172
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +3

Query: 1209 HRGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310
            +RGRDRVGVGIRSAYIRVLG QVDTDGSGR+FAG
Sbjct: 279  NRGRDRVGVGIRSAYIRVLGIQVDTDGSGRTFAG 312


>ref|XP_580477.2| PREDICTED: similar to minichromosome maintenance protein 4 [Bos
            taurus]
          Length = 793

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 4/246 (1%)
 Frame = +1

Query: 457  KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627
            K   QR  + F+       +  G       Y   L+     GE ++ V  E + SFD +L
Sbjct: 89   KENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLEEINVTGEPFLNVNCEHIKSFDTNL 148

Query: 628  ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804
               L   P E +   + A  E+  +        D +L+  IQV   +     ++R+L  +
Sbjct: 149  YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPE 203

Query: 805  TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984
             +  L+ I G+VI  S +  +      QC+ C +T      R  +    +  +C+T  + 
Sbjct: 204  DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPCVCERCHTSHS- 262

Query: 985  RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164
                      ++ ++    D Q +KLQE P+ +P G+ P  + L+    L DKV PG+RV
Sbjct: 263  --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVVLFAHNDLVDKVQPGDRV 314

Query: 1165 TIMGIY 1182
             + GIY
Sbjct: 315  HVTGIY 320


>ref|XP_878074.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 6
            [Bos taurus]
          Length = 825

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 1/241 (0%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 117  EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 173  EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
            +  G+V + +GV  + + +   C  C   L         E    P  C       P+C  
Sbjct: 230  RTSGVVTSCTGVLPQLSMVKYNCNKCGFVLGPFCQSQNQE--VKPGSC-------PECQS 280

Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
              P+ +  ++C     Q+L     P   P    P            D   PG  + + GI
Sbjct: 281  AGPFEVNMEECLAAHRQSLTCSNPPPPPPSRWSPSLYAYPVTHIALDASCPGAEIELTGI 340

Query: 1180 Y 1182
            Y
Sbjct: 341  Y 341


>ref|XP_869445.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 3
            [Bos taurus]
          Length = 831

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 7/247 (2%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 117  EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 173  EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
            +  G+V + +GV  + + +   C  C   L         E    P  C       P+C  
Sbjct: 230  RTSGVVTSCTGVLPQLSMVKYNCNKCGFVLGPFCQSQNQE--VKPGSC-------PECQS 280

Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVP------HGEMPRHMQLYCDRYLCDKVVPGNR 1161
              P+ +  ++C     Q+L     P   P          PR  +     YL D+      
Sbjct: 281  AGPFEVNMEECLAAHRQSLTFSRGPVRCPGRVCVTGSSSPRGGRCCRRSYLSDECPGPRE 340

Query: 1162 VTIMGIY 1182
            + + GIY
Sbjct: 341  LELTGIY 347


>ref|XP_877890.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform 5
            [Bos taurus]
          Length = 831

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 4/237 (1%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 117  EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 173  EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNT-DQAGRP-KC 996
            +  G+V + +GV  + + +   C  C              G+ L   C + +Q  +P  C
Sbjct: 230  RTSGVVTSCTGVLPQLSMVKYNCNKC--------------GFVLGPFCQSQNQEVKPGSC 275

Query: 997  PLDPYFIMPDKCKCVDFQTLKLQEL--PDAVPHGEMPRHMQLYCDRYLCDKVVPGNR 1161
            P         +C+      + ++E+  P   P   +P  + L C  Y   +++P +R
Sbjct: 276  P---------ECQSAGPFEVNMEEVKPPTPAPISMVPLPLCLPCHTYCSGRLLPRSR 323


>ref|NP_001013604.1| minichromosome maintenance deficient (S. cerevisiae) 3 [Bos taurus]
          Length = 435

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 9/224 (4%)
 Frame = +1

Query: 538  YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
            Y+ +++   +  +Y + V + DL   +E  A+ L     E L   + A K+    +    
Sbjct: 32   YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRALKDFVASIDA-- 89

Query: 718  PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
             T  +  ++  + L+       +  R+L S  +S +V + GIV   S VR K  R    C
Sbjct: 90   -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148

Query: 892  RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
             + + T       LT++   P    Y  P K   +     +  L  Y          D Q
Sbjct: 149  PATKKTIERRYSDLTSLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197

Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
             + +QE+P+  P G++PR + +  D  L D+V PG+RV ++G Y
Sbjct: 198  IITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVQVVGTY 241


>ref|XP_587221.2| PREDICTED: similar to minichromosome maintenance protein 2 isoform
           1 [Bos taurus]
          Length = 825

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +1

Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
           ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172

Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
           + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229

Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900
           +  G+V + +GV  + + +   C  C
Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKC 255


>ref|XP_877686.1| PREDICTED: similar to minichromosome maintenance protein 2 isoform
           4 [Bos taurus]
          Length = 834

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +1

Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
           ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 117 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 172

Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
           + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 173 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 229

Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900
           +  G+V + +GV  + + +   C  C
Sbjct: 230 RTSGVVTSCTGVLPQLSMVKYNCNKC 255


>ref|XP_584574.2| PREDICTED: similar to minichromosome maintenance protein domain
            containing 1 isoform 1 [Bos taurus]
          Length = 441

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%)
 Frame = +1

Query: 550  LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723
            LK       Y + V    L   + ++ +Y    P E L + + A +  A  + +   +P 
Sbjct: 29   LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88

Query: 724  GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
            G  + Q++   +      P  +R    K+  + H + + G VI  S V+         C 
Sbjct: 89   GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148

Query: 895  SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065
             C++     A       +  P  C + +     C    +  + D     +C D+Q +K+Q
Sbjct: 149  KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204

Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
            E    +  G +PR MQ+  +  L D    G+ +TI G+
Sbjct: 205  EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242


>ref|XP_879437.1| PREDICTED: similar to minichromosome maintenance protein domain
            containing 1 isoform 3 [Bos taurus]
          Length = 482

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%)
 Frame = +1

Query: 550  LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723
            LK       Y + V    L   + ++ +Y    P E L + + A +  A  + +   +P 
Sbjct: 29   LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88

Query: 724  GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
            G  + Q++   +      P  +R    K+  + H + + G VI  S V+         C 
Sbjct: 89   GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148

Query: 895  SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065
             C++     A       +  P  C + +     C    +  + D     +C D+Q +K+Q
Sbjct: 149  KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204

Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
            E    +  G +PR MQ+  +  L D    G+ +TI G+
Sbjct: 205  EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,330,293
Number of Sequences: 33508
Number of extensions: 1114591
Number of successful extensions: 6275
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6217
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 4192427608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-006709
         (1311 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853134.1| PREDICTED: similar to DNA replication licensing...   282   3e-88
Alignment   gi|XP_541736.2| PREDICTED: similar to minichromosome maintenanc...    84   2e-16
Alignment   gi|XP_535063.2| PREDICTED: similar to minichromosome maintenanc...    75   1e-13
Alignment   gi|XP_538960.2| PREDICTED: similar to DNA replication licensing...    69   1e-11
Alignment   gi|XP_536865.2| PREDICTED: similar to DNA replication licensing...    62   1e-09
Alignment   gi|XP_859866.1| PREDICTED: similar to DNA replication licensing...    62   1e-09
Alignment   gi|XP_859831.1| PREDICTED: similar to DNA replication licensing...    62   1e-09
Alignment   gi|XP_849809.1| PREDICTED: similar to DNA replication licensing...    62   1e-09

>ref|XP_853134.1| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46
            homolog) (P1-CDC46) [Canis familiaris]
          Length = 634

 Score =  282 bits (721), Expect(2) = 3e-88
 Identities = 132/138 (95%), Positives = 137/138 (99%)
 Frame = +1

Query: 790  SLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCN 969
            S++SD MSHLVKIPGI+I+ASGVRAKATRISIQCRSCRNTL+NIAMRPGLEGYALPRKCN
Sbjct: 39   SVQSDMMSHLVKIPGIIISASGVRAKATRISIQCRSCRNTLSNIAMRPGLEGYALPRKCN 98

Query: 970  TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 1149
            TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV
Sbjct: 99   TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 158

Query: 1150 PGNRVTIMGIYSIKKFGL 1203
            PGNRVTIMGIYSIKKFGL
Sbjct: 159  PGNRVTIMGIYSIKKFGL 176



 Score = 63.2 bits (152), Expect(2) = 3e-88
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +3

Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310
            +GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 180  KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 212


>ref|XP_541736.2| PREDICTED: similar to minichromosome maintenance protein 2 [Canis
            familiaris]
          Length = 1001

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +  G     F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 292  EIHHRFKNFLRTHVDGHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 347

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 348  EAPAELLQIFDEAALEV---VLAMYPKYDRIASHIHVRISHLPLVEELRSLRQLHLNQLI 404

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
            +  G+V + +GV  + + +   C  C   L         E    P  C       P+C  
Sbjct: 405  RTSGVVTSCTGVLPQLSMVKYNCNKCSFVLGPFCQSQNQE--VKPGSC-------PECQS 455

Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
              P+ +  ++    ++Q +++QE P  V  G +PR         L D   PG+ + + GI
Sbjct: 456  AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 515

Query: 1180 Y 1182
            Y
Sbjct: 516  Y 516


>ref|XP_535063.2| PREDICTED: similar to minichromosome maintenance protein 4 [Canis
            familiaris]
          Length = 929

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 4/246 (1%)
 Frame = +1

Query: 457  KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627
            K   QR  + F+       +  G       Y   L     +GE ++ V  E + SFD++L
Sbjct: 229  KENFQRFLQHFIDPLAKEEETIGIDITEPLYMQRLGEINVIGEPFLNVNCEHIQSFDKNL 288

Query: 628  ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804
               L   P E +   + A  E+  +        D +L+  IQV   +     ++R+L  D
Sbjct: 289  YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPD 343

Query: 805  TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984
             +  L+ I G+VI  S +  +      QC+ C +T      R  +   ++   C+T  + 
Sbjct: 344  DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPSVCEHCHTTHS- 402

Query: 985  RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164
                      ++ ++    D Q +KLQE P+ +P G+ P  + L+    L DKV PG+RV
Sbjct: 403  --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGDRV 454

Query: 1165 TIMGIY 1182
             I GIY
Sbjct: 455  NITGIY 460


>ref|XP_538960.2| PREDICTED: similar to DNA replication licensing factor MCM3 (DNA
            polymerase alpha holoenzyme-associated protein P1) (RLF
            beta subunit) (P102 protein) (P1-MCM3) [Canis familiaris]
          Length = 916

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 10/295 (3%)
 Frame = +1

Query: 328  LVNLWFREAREGRGAVMSGFDDPGIFYSDSFGGDNAADEGQARKSQLQR-RFKEFLRQYR 504
            ++ LW+RE      A      DP        GG  +   G A    L     +E  R Y 
Sbjct: 73   ILALWWREKSASFRAGAGPCGDP----RRGAGGGGSVAAGMAGTVVLDDVELREAQRDYL 128

Query: 505  VGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAA 684
               D       Y+ +++   +  +Y + V + DL   +E  A+ L     E L   + A 
Sbjct: 129  DFLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRAL 188

Query: 685  KEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGV 858
            K+    +     T  +  ++  + L+       +  R+L S  +S +V + GIV   S V
Sbjct: 189  KDFVASIDA---TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLV 245

Query: 859  RAKATRISIQCRSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFI 1017
            R K  R    C + + T       LT +   P    Y  P K   +     +  L  Y  
Sbjct: 246  RPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY-- 301

Query: 1018 MPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
                    D QT+ +QE+P+  P G++PR + +  D  L DKV PG+RV ++G Y
Sbjct: 302  -------KDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRVQVVGTY 349


>ref|XP_536865.2| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 1 [Canis familiaris]
          Length = 733

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY ++L +  +  +  + ++++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +A +E+  +         +VL    + ++M++                   
Sbjct: 70   ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S   P  IR +++D++  LV + GIV   S V+ +    +  C  C  
Sbjct: 130  LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     K + FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277


>ref|XP_859866.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 5 [Canis familiaris]
          Length = 724

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY ++L +  +  +  + ++++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +A +E+  +         +VL    + ++M++                   
Sbjct: 70   ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S   P  IR +++D++  LV + GIV   S V+ +    +  C  C  
Sbjct: 130  LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     K + FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277


>ref|XP_859831.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 4 [Canis familiaris]
          Length = 389

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY ++L +  +  +  + ++++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +A +E+  +         +VL    + ++M++                   
Sbjct: 70   ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S   P  IR +++D++  LV + GIV   S V+ +    +  C  C  
Sbjct: 130  LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     K + FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277


>ref|XP_849809.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
            homolog) (P1.1-MCM3) isoform 3 [Canis familiaris]
          Length = 719

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY ++L +  +  +  + ++++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +A +E+  +         +VL    + ++M++                   
Sbjct: 70   ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S   P  IR +++D++  LV + GIV   S V+ +    +  C  C  
Sbjct: 130  LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     K + FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,499,840
Number of Sequences: 33732
Number of extensions: 1315286
Number of successful extensions: 7541
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 5431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7495
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5178021090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-006709
         (1311 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006730.2| minichromosome maintenance deficient protein 5 ...   554   e-170
Alignment   gi|NP_004517.2| minichromosome maintenance protein 2 [Homo sapi...    82   8e-16
Alignment   gi|NP_005905.2| minichromosome maintenance protein 4 [Homo sapi...    77   2e-14
Alignment   gi|NP_877423.1| minichromosome maintenance protein 4 [Homo sapi...    77   2e-14
Alignment   gi|NP_002379.2| minichromosome maintenance protein 3 [Homo sapi...    65   1e-10
Alignment   gi|NP_005907.3| minichromosome maintenance protein 7 isoform 1 ...    64   2e-10
Alignment   gi|NP_694987.1| minichromosome maintenance protein domain conta...    49   1e-05

>ref|NP_006730.2| minichromosome maintenance deficient protein 5 [Homo sapiens]
          Length = 734

 Score =  554 bits (1427), Expect(2) = e-170
 Identities = 269/276 (97%), Positives = 272/276 (98%)
 Frame = +1

Query: 376  MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
            MSGFDDPGIFYSDSFGGD  ADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1    MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 556  RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
            RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRP+G+EV
Sbjct: 61   RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEV 120

Query: 736  LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
            LQDIQVMLKSDASPSSIRSLKSD MSHLVKIPGI+IAAS VRAKATRISIQCRSCRNTLT
Sbjct: 121  LQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLT 180

Query: 916  NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
            NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181  NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240

Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
            MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 241  MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276



 Score = 64.3 bits (155), Expect(2) = e-170
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +3

Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310
            RGRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 280  RGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 312


>ref|NP_004517.2| minichromosome maintenance protein 2 [Homo sapiens]
          Length = 904

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +        F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 194  EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 250  EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
            +  G+V + +GV  + + +   C  C   L         E    P  C       P+C  
Sbjct: 307  RTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357

Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
              P+ +  ++    ++Q +++QE P  V  G +PR         L D   PG+ + + GI
Sbjct: 358  AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417

Query: 1180 Y 1182
            Y
Sbjct: 418  Y 418


>ref|NP_005905.2| minichromosome maintenance protein 4 [Homo sapiens]
          Length = 863

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%)
 Frame = +1

Query: 451  ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621
            A K   QR  + F+       +  G       Y   L     +GE ++ V  E + SFD+
Sbjct: 161  ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220

Query: 622  DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798
            +L   L   P E +   + A  E+  +        D +L+  IQV   +     ++R+L 
Sbjct: 221  NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275

Query: 799  SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978
             + +  L+ I G+VI  S +  +      QC+ C +T T + M  G    A P  C    
Sbjct: 276  PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332

Query: 979  AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158
                   +    +  DK      Q +KLQE P+ +P G+ P  + L+    L DKV PG+
Sbjct: 333  TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386

Query: 1159 RVTIMGIY 1182
            RV + GIY
Sbjct: 387  RVNVTGIY 394


>ref|NP_877423.1| minichromosome maintenance protein 4 [Homo sapiens]
          Length = 863

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%)
 Frame = +1

Query: 451  ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621
            A K   QR  + F+       +  G       Y   L     +GE ++ V  E + SFD+
Sbjct: 161  ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220

Query: 622  DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798
            +L   L   P E +   + A  E+  +        D +L+  IQV   +     ++R+L 
Sbjct: 221  NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275

Query: 799  SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978
             + +  L+ I G+VI  S +  +      QC+ C +T T + M  G    A P  C    
Sbjct: 276  PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332

Query: 979  AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158
                   +    +  DK      Q +KLQE P+ +P G+ P  + L+    L DKV PG+
Sbjct: 333  TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386

Query: 1159 RVTIMGIY 1182
            RV + GIY
Sbjct: 387  RVNVTGIY 394


>ref|NP_002379.2| minichromosome maintenance protein 3 [Homo sapiens]
          Length = 808

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
 Frame = +1

Query: 538  YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
            Y+ +++   +  +Y + V + DL   +E  A+ L     E L   + A K+    +    
Sbjct: 32   YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89

Query: 718  PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
             T  +  ++  V L+       +  R+L S  +S +V + GIV   S VR K  R    C
Sbjct: 90   -TYAKQYEEFYVGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148

Query: 892  RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
             + + T       LT +   P    Y  P K   +     +  L  Y          D Q
Sbjct: 149  PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197

Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            T+ +QE+P+  P G++PR + +  D  L DK  PG+RV ++G Y
Sbjct: 198  TITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGTY 241


>ref|NP_005907.3| minichromosome maintenance protein 7 isoform 1 [Homo sapiens]
          Length = 719

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY ++L R  +  +  + V+++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +A +E+  +         +VL    + ++M++                   
Sbjct: 70   ARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVRSPQNQYPAE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S   P  IR +++D++  LV + GIV   S V+ K    +  C  C  
Sbjct: 130  LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     + + FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSRFIKFQEMKMQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277


>ref|NP_694987.1| minichromosome maintenance protein domain containing 1 [Homo sapiens]
          Length = 391

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 8/218 (3%)
 Frame = +1

Query: 550  LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723
            LK       Y + V    L   + ++ +Y    P+E L + + A +  A  + +   +P 
Sbjct: 29   LKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPE 88

Query: 724  GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
               + Q++   +      P  +R    K+  + H + + G VI  S V+         C 
Sbjct: 89   AVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 148

Query: 895  SCRNTLTNIAMRPGLEGYALPRKC---NTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQ 1065
             C++     A       +  P  C    +  + +  C L      P +C+  D+Q +K+Q
Sbjct: 149  KCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTC-LSGLSSSPTRCR--DYQEIKIQ 205

Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
            E    +  G +PR M++  +  L D    G+ +TI GI
Sbjct: 206  EQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGI 243


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,338,505
Number of Sequences: 39411
Number of extensions: 1330570
Number of successful extensions: 8355
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 5522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8315
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4513643104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-006709
         (1311 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032592.1| minichromosome maintenance deficient 5, cell di...   521   e-160
Alignment   gi|NP_032590.1| minichromosome maintenance deficient 2 mitotin ...    82   1e-15
Alignment   gi|NP_032591.2| minichromosome maintenance protein 4 [Mus muscu...    67   4e-11
Alignment   gi|NP_032589.1| minichromosome maintenance deficient 3 [Mus mus...    67   5e-11
Alignment   gi|NP_032594.1| minichromosome maintenance protein 7 [Mus muscu...    62   1e-09
Alignment   gi|NP_082106.2| minichromosome maintenance deficient domain con...    52   2e-06
Alignment   gi|NP_079952.2| minichromosome maintenance deficient 8 [Mus mus...    50   4e-06
Alignment   gi|NP_032593.1| minichromosome maintenance protein 6 [Mus muscu...    50   7e-06

>ref|NP_032592.1| minichromosome maintenance deficient 5, cell division cycle 46 [Mus
            musculus]
          Length = 733

 Score =  521 bits (1341), Expect(2) = e-160
 Identities = 255/276 (92%), Positives = 262/276 (94%)
 Frame = +1

Query: 376  MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
            MSGFDDPGIFYSDSFGGD  A+EGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1    MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 556  RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
            RHYNLGEYWIEVEMEDLASFDE+LAD+L+KQPAEHLQLLEEAAKEVADEVTRPRP GDE+
Sbjct: 61   RHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDEL 120

Query: 736  LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
            LQDIQVMLKSDASPSSIR LKSD MSHLVKIPGI+I+AS VRAKATRISIQCRSC NTLT
Sbjct: 121  LQDIQVMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLT 180

Query: 916  NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
            NIAM P   G  LPRKCN DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181  NIAM-PRPRGLCLPRKCNMDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 239

Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
            MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 240  MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 275



 Score = 63.2 bits (152), Expect(2) = e-160
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +3

Query: 1212 RGRDRVGVGIRSAYIRVLGHQVDTDGSGRSFAG 1310
            +GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 279  KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 311


>ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin [Mus musculus]
          Length = 904

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%)
 Frame = +1

Query: 463  QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
            ++  RFK FLR +        F  +  D  K +       + V  EDLA+ +  LA +L 
Sbjct: 194  EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249

Query: 643  KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
            + PAE LQ+ +EAA EV   V    P  D +   I V +        +RSL+   ++ L+
Sbjct: 250  EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306

Query: 823  KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCP- 999
            +  G+V + +GV  + + +   C  C   L         E    P  C       P+C  
Sbjct: 307  RTSGVVTSCTGVLPQLSMVKYNCSKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357

Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
              P+ I  ++    ++Q +++QE P  V  G +PR         L D   PG+ + + GI
Sbjct: 358  AGPFEINMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417

Query: 1180 Y 1182
            Y
Sbjct: 418  Y 418


>ref|NP_032591.2| minichromosome maintenance protein 4 [Mus musculus]
          Length = 862

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 1/216 (0%)
 Frame = +1

Query: 538  YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
            Y  +L      GE ++ V  E + SF ++L   L   P E +   + A  E+  +     
Sbjct: 192  YMQQLGEINITGEPFLNVNCEHIKSFSKNLYRQLISYPQEVIPTFDMAVNEIFFD----- 246

Query: 718  PTGDEVLQ-DIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
               D +L+  IQV   +     S+R+L  + +  L+ I G+VI  S +  +      QC+
Sbjct: 247  RYPDSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQ 306

Query: 895  SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELP 1074
               +T T + +  G    A P  C           +       DK      Q +KLQE P
Sbjct: 307  VSAHT-TRVEIDRGR--IAEPCSCVHCHTTHSMALIHNRSFFSDK------QMIKLQESP 357

Query: 1075 DAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            + +P G+ P  + L+    L DKV PG+RV + GIY
Sbjct: 358  EDMPAGQTPHTIVLFAHNDLVDKVQPGDRVNVTGIY 393


>ref|NP_032589.1| minichromosome maintenance deficient 3 [Mus musculus]
          Length = 812

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%)
 Frame = +1

Query: 538  YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
            Y+++++   +  +Y + V + DL   +E  A+ L     E L   + A K+    +    
Sbjct: 32   YQNKVRELISDNQYRLIVSVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89

Query: 718  PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
             T  +  ++  + L+       +  R+L S  +S +V + GIV   S VR K  R    C
Sbjct: 90   -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148

Query: 892  RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
             + + T       LT +   P    Y  P K   +     +  L  Y          D Q
Sbjct: 149  PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197

Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            T+ +QE+P+  P G++PR + +  D  L DKV PG+R+ ++G Y
Sbjct: 198  TITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTY 241


>ref|NP_032594.1| minichromosome maintenance protein 7 [Mus musculus]
          Length = 719

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 36/274 (13%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            + + K+FL+++    +     FKY  +L    +  +  + V+++D+A  D +L D + + 
Sbjct: 10   KEKVKKFLQEFYYENELGKKQFKYGTQLVHLAHREQVALYVDLDDIAEDDPELVDSICEN 69

Query: 649  PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
               + +L  +  +E+  E         +VL    + ++M++                   
Sbjct: 70   AKRYSRLFGDVVQELLPEYKEKEVVNKDVLDVYIEHRLMMEQRSRDPGAVRNPQNQYPSE 129

Query: 763  ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
                        S + P  IR +++D++  L+ + GIV   S V+ +    +  C  C  
Sbjct: 130  LMRRFELYFRGPSSSKPRVIREVRADSVGKLLTVRGIVTRVSEVKPRMVVATYTCDQCGA 189

Query: 907  TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
                    P      +   ++C T+++G         ++     K V FQ +K+QE  D 
Sbjct: 190  ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFVKFQEMKIQEHSDQ 243

Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
            VP G +PR + +  +        PG+ V++ GI+
Sbjct: 244  VPVGNIPRSITVVLEGENTRIAQPGDHVSVTGIF 277


>ref|NP_082106.2| minichromosome maintenance deficient domain containing 1 [Mus
            musculus]
          Length = 1290

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 9/219 (4%)
 Frame = +1

Query: 550  LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTR--PRPT 723
            LK       Y + V    L   + ++ DY    P E L + + A +  A  + +  P   
Sbjct: 185  LKERDEDAHYPVVVNAMSLFETNMEIGDYFTVFPNEVLTVFDSALRRSALAILQSLPETE 244

Query: 724  GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
            G  + Q++   +      P  +R    K+  + H + + G VI  S V+         C 
Sbjct: 245  GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 304

Query: 895  SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD----KCKCVDFQTLKL 1062
             C++     A       ++ P  C +       C    +  + D      +C D+Q +K+
Sbjct: 305  KCKHVFMVEADFEQYYTFSRPSSCPS----LASCDSSKFSCLSDLSSSPARCRDYQEIKI 360

Query: 1063 QELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
            QE    +  G +PR M++  +  L D    G+ +TI G+
Sbjct: 361  QEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGV 399


>ref|NP_079952.2| minichromosome maintenance deficient 8 [Mus musculus]
          Length = 805

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
 Frame = +1

Query: 784  IRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEG-YALPR 960
            ++++++      + I G V+  S ++   T ++ QC +C      I   P  +G Y LP 
Sbjct: 172  LKNIRATCYGKYISIRGTVVRVSNIKPLCTNMAFQCAACGE----IQSFPLPDGKYTLPT 227

Query: 961  KCNTDQA-GRPKCPL--DPYFIMPDKCKCVDFQTLKLQELPDAVPH--GEMPRHMQLYCD 1125
            KC      GR   PL   P  +       +D+Q +K+QEL        G +PR ++    
Sbjct: 228  KCPVPACRGRSFAPLRSSPLTVT------LDWQLIKIQELMSDAQREAGRIPRTIECELV 281

Query: 1126 RYLCDKVVPGNRVTIMGIYSI 1188
              L D  VPG+ VT+ GI  +
Sbjct: 282  HDLVDSCVPGDTVTVTGIVKV 302


>ref|NP_032593.1| minichromosome maintenance protein 6 [Mus musculus]
          Length = 821

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 2/238 (0%)
 Frame = +1

Query: 469  QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
            Q+ F +FL +++ G+D      ++ +EL R        + V   DL  F++ L+  + ++
Sbjct: 27   QKLFLDFLEEFQ-GSDGEIKYLQFAEELIRPER---NTLVVSFADLEQFNQQLSTTIQEE 82

Query: 649  PAEHLQLLEEAAKE-VADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLVK 825
                   L  A K  V D    P        +D  V  +   +   IR L S  +  L +
Sbjct: 83   FYRVYPYLCRALKTFVKDRKEIP------FAKDFYVAFQDLPTRHKIRELTSSRIGLLTR 136

Query: 826  IPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLD 1005
            I G V+    V  +    +  C  C+  + ++  +     Y  P  C       P C   
Sbjct: 137  ISGQVVRTHPVHPELVSGTFLCLDCQTVIKDVEQQ---FKYTQPNICRN-----PVCANR 188

Query: 1006 PYFIMP-DKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMG 1176
              F++  +K + VDFQ +++QE    +P G +PR +++       +    G+R    G
Sbjct: 189  KRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGDRCDFTG 246


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,806,867
Number of Sequences: 45328
Number of extensions: 1451598
Number of successful extensions: 8164
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 5889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8089
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5598158610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)