Animal-Genome cDNA 20060611C-007057


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-007057
         (1054 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a...   100   4e-23
Alignment   gi|NP_999497.1| G-beta like protein [Sus scrofa]                      92   2e-20
Alignment   gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ...    59   2e-10

>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
            scrofa]
          Length = 410

 Score =  100 bits (250), Expect = 4e-23
 Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 22/259 (8%)
 Frame = +1

Query: 334  DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 513
            + YA L GH   V  + ++   S++ SAS D T+ VWD ETG+  + LKGHT  V     
Sbjct: 100  EKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158

Query: 514  ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIK 690
               G +L+ + S D T+KLWD +    I+T   + + V +V      D I+S   D  IK
Sbjct: 159  DHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217

Query: 691  VWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQ 870
            +W+++      T  GH + V               + D TVRVW V   A KE   ++ +
Sbjct: 218  MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 871  GNVHNFEKNLLRC-SWSPDGSK--------------------IAAGSADRFVYVWDYTSR 987
                   ++++ C SW+P+ S                     + +GS D+ + +WD ++ 
Sbjct: 275  ------HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328

Query: 988  RILYKLPGHAGSINEVAFH 1044
              L  L GH   +  V FH
Sbjct: 329  MCLMTLVGHDNWVRGVLFH 347



 Score = 99.0 bits (245), Expect = 2e-22
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 21/296 (7%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            LSGH   V    FHP  S + SA  D  I +W+ Y   D   TLKGH+ +V ++ ++  G
Sbjct: 104  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
             +L S S D T+ +WD +  E ++ + GH   V+S      G  +V + + D T+K+W++
Sbjct: 163  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SAARDKTIKMWEV 221

Query: 580  RKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTX 756
            +    ++TF    + V  V  N     I S   D  ++VW +   +    +R H   V  
Sbjct: 222  QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281

Query: 757  XXXXXXXXXXXXN--------------------AMDNTVRVWDVRPFAPKERCVKIFQGN 876
                        +                    + D T+++WDV        C+    G+
Sbjct: 282  ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGH 337

Query: 877  VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044
              N+ + +L   +   G  I + + D+ + VWDY ++R +  L  H   +  + FH
Sbjct: 338  -DNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389



 Score = 97.1 bits (240), Expect = 6e-22
 Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYG-DCDNYATLKGHSGAVMELHYNTD 396
           L GH   V    F  +G  LAS   D  I LW+  G +C    T+ GH   V  +    +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPN 203

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           G  + SA+ DKT+ +W+ +TG  VK   GH  +V    P + G  L+ + S+D TV++W 
Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWV 262

Query: 577 IRKK---AAIQTFQNTYQVLA------------VTFNDTSDQ------IISGGIDNDIKV 693
           +  K   A ++  ++  + ++             T ++T         ++SG  D  IK+
Sbjct: 263 VATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322

Query: 694 WDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQG 873
           WD+       T+ GH + V               A D T+RVWD +     +RC+K    
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNA 378

Query: 874 NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWD 975
           + H F  +L    +      +  GS D+ V VW+
Sbjct: 379 HEH-FVTSL---DFHKTAPYVVTGSVDQTVKVWE 408



 Score = 88.6 bits (218), Expect = 2e-19
 Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHY 387
           I  + GH+  V      PNG  + SA  D+ I +W V  G C    T  GH   V  +  
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYC--VKTFTGHREWVRMVRP 242

Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV-------NSCYPA---------- 516
           N DG+++ S S D+TV VW   T E    L+ H   V        S Y +          
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302

Query: 517 ---RRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDND 684
              + GP L+ +GS D T+K+WD+     + T   +   V  V F+     I+S   D  
Sbjct: 303 KSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361

Query: 685 IKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVR 831
           ++VWD +  +   T+  H   VT              ++D TV+VW+ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410



 Score = 63.5 bits (153), Expect = 8e-12
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 1/174 (0%)
 Frame = +1

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            ++ + S+D T+K+WD       +T + +T  V  ++F+ +   + S   D  IK+WD + 
Sbjct: 122  VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
             +   TM GH  +V+              A D T+++W+V+       CVK F G  H  
Sbjct: 182  FECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQ----TGYCVKTFTG--HRE 235

Query: 889  EKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
               ++R   + DG+ IA+ S D+ V VW   ++    +L  H   +  +++ P+
Sbjct: 236  WVRMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPE 287


>ref|NP_999497.1| G-beta like protein [Sus scrofa]
          Length = 317

 Score = 92.4 bits (228), Expect = 2e-20
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 10/246 (4%)
 Frame = +1

Query: 346  TLKGHSGAVMELHYNTD-GSMLFSASTDKTVAVW-----DSETGERVKRLKGHTSFVNSC 507
            TLKGH+G V ++        M+ SAS DKT+ +W     ++  G   + L+GH+ FV+  
Sbjct: 10   TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69

Query: 508  YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDND 684
              +  G Q   +GS DGT++LWD+      + F  +T  VL+V F+  + QI+SG  D  
Sbjct: 70   VISSDG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128

Query: 685  IKVWD-LRQNKLTYTMRGHAD--SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERC 855
            IK+W+ L   K T     H++  S                  D  V+VW++     K   
Sbjct: 129  IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188

Query: 856  VKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEV 1035
            +       H    N +  S  PDGS  A+G  D    +WD    + LY L G    IN +
Sbjct: 189  IG------HTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL 239

Query: 1036 AFHPDK 1053
             F P++
Sbjct: 240  CFSPNR 245



 Score = 89.7 bits (221), Expect = 1e-19
 Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 50/304 (16%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPN-GSTLASAGFDRLILLWNVYGDCDNYA----TLKGHSGAVMELH 384
           L GH G V      P     + SA  D+ I++W +  D  NY      L+GHS  V ++ 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70

Query: 385 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV 564
            ++DG    S S D T+ +WD  TG   +R  GHT  V S   +    Q+V +GS D T+
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTI 129

Query: 565 KLWDIRK--KAAIQTFQNTYQVLAVTFNDTSDQ--IISGGIDNDIKVWDLRQNKLTYTMR 732
           KLW+     K  +Q   ++  V  V F+  S    I+S G D  +KVW+L   KL     
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189

Query: 733 GHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRP-----------------FAPKER--- 852
           GH   +                 D    +WD+                   F+P      
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249

Query: 853 -----CVKIF--QGN--VHNFEKNLLRCS------------WSPDGSKIAAGSADRFVYV 969
                 +KI+  +G   V   ++ ++  S            WS DG  + AG  D  V V
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309

Query: 970 WDYT 981
           W  T
Sbjct: 310 WQVT 313


>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
          Length = 493

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 5/211 (2%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
           + +L GH   V    +  N   L+S   DR+IL  ++      +   L+GH   V  L +
Sbjct: 264 LSMLEGHTARVGALAW--NADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKW 321

Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 561
           +TD  +L S   D  + VW+  +   V++   H + V +    P + G      G+ D  
Sbjct: 322 STDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRC 381

Query: 562 VKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIIS--GGIDNDIKVWDLRQNKLTYTMRG 735
           ++ W+      +Q      QV  + ++  +++++S  G   N I VW          + G
Sbjct: 382 IRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTG 441

Query: 736 HADSVTXXXXXXXXXXXXXNAMDNTVRVWDV 828
           H+  V               A D T+R W+V
Sbjct: 442 HSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472



 Score = 53.5 bits (127), Expect = 8e-09
 Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 12/268 (4%)
 Frame = +1

Query: 283  SAGFDRLILLWNVYGDCDNYAT----LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDS 450
            S G    + LW+    C +  T    L     +V  + ++  G+++   +    V +WD+
Sbjct: 202  SVGLGTCVYLWSA---CTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258

Query: 451  ETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK---KAAIQTFQNTYQ 621
              G+++  L+GHT+ V +   A    QL  +GS D  +   DIR    ++  +   +  +
Sbjct: 259  AAGKKLSMLEGHTARVGAL--AWNADQL-SSGSRDRMILQRDIRTPPLQSERRLQGHRQE 315

Query: 622  VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX---XXXXXXXXXX 792
            V  + ++     + SGG DN + VW+            H  +V                 
Sbjct: 316  VCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGG 375

Query: 793  NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA--GSADRFVY 966
               D  +R W+     P + C+        +    +   +WS   +++ +  G +   + 
Sbjct: 376  GTADRCIRFWNTLTGQPLQ-CI--------DTGSQVCNLAWSKHANELVSTHGYSQNQIL 426

Query: 967  VWDYTSRRILYKLPGHAGSINEVAFHPD 1050
            VW Y S   + KL GH+  +  +A  PD
Sbjct: 427  VWKYPSLTQVAKLTGHSYRVLYLAMSPD 454


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 984,537
Number of Sequences: 1040
Number of extensions: 23532
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 96152000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-007057
         (1054 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isof...   608   e-174
Alignment   gi|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isof...   199   4e-51
Alignment   gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]         128   9e-30
Alignment   gi|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like...   120   2e-27
Alignment   gi|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like...   120   2e-27
Alignment   gi|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like...   120   2e-27
Alignment   gi|NP_001033649.1| WD repeat domain 51A [Bos taurus]                 118   9e-27
Alignment   gi|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos ...   110   2e-24
Alignment   gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos...   108   7e-24
Alignment   gi|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase ...   108   9e-24

>ref|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isoform 1 [Bos taurus]
          Length = 358

 Score =  608 bits (1568), Expect = e-174
 Identities = 297/340 (87%), Positives = 298/340 (87%)
 Frame = +1

Query: 34   MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
            MIEQQKRKGPELPLVPVKRQRHE                            RCSSLQAPI
Sbjct: 1    MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60

Query: 214  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
            MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61   MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
            DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180

Query: 574  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241  GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 301  IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340


>ref|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isoform 2 [Bos taurus]
          Length = 127

 Score =  199 bits (505), Expect = 4e-51
 Identities = 94/109 (86%), Positives = 95/109 (87%)
 Frame = +1

Query: 727  MRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 906
            MRGHADSVT             NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR
Sbjct: 1    MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 60

Query: 907  CSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            CSWSPDGSKIAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 61   CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 109


>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
          Length = 441

 Score =  128 bits (321), Expect = 9e-30
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
            L GH   VY   F+ P G  +A+  FD+   LW+V  G C  Y T +GH+  ++ L +N 
Sbjct: 156  LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 213

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
              +++ + S D T  +WD ++GE V  L GH++ + S      G +++ TGS D TV +W
Sbjct: 214  QSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII-TGSFDHTVTVW 272

Query: 574  DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
            +      + T   +  ++ +  FN     I++G +D   K+WD    K   T+ GH D +
Sbjct: 273  EADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEI 332

Query: 751  TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
                           + D T R++     A    CV   +G+    E  + + S++P G+
Sbjct: 333  LDSCFDYTGKLIATASADGTARIFS----AATRECVTKLEGH----EGEISKISFNPQGN 384

Query: 931  KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044
            ++  GS+D+   +WD  + + L  L GH   I   AF+
Sbjct: 385  RLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 422



 Score =  126 bits (317), Expect = 3e-29
 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%)
 Frame = +1

Query: 265  NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
            +GS   +  +DR   LW+     +   TL+GH   V  + +N   G  + + S DKT  +
Sbjct: 129  SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 187

Query: 442  WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
            W  ETG+     +GHT+ +  C        LV TGS D T KLWDI+    + T   ++ 
Sbjct: 188  WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSA 246

Query: 619  QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
            ++++++FN + ++II+G  D+ + VW+    +  YT+ GH   ++              +
Sbjct: 247  EIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGS 306

Query: 799  MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978
            MD T ++WD    A   +CV    G+    +  +L   +   G  IA  SAD    ++  
Sbjct: 307  MDKTCKLWD----AVNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 358

Query: 979  TSRRILYKLPGHAGSINEVAFHP 1047
             +R  + KL GH G I++++F+P
Sbjct: 359  ATRECVTKLEGHEGEISKISFNP 381



 Score =  113 bits (283), Expect = 2e-25
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
 Frame = +1

Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
           GH  E+ C  F+P  + +A+   D    LW++    +   TL GHS  ++ L +NT G+ 
Sbjct: 201 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLTGHSAEIISLSFNTSGNR 259

Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD-IR 582
           + + S D TV VW+++TG +V  L GH + ++S         L+ TGS D T KLWD + 
Sbjct: 260 IITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAV-FNWDCSLILTGSMDKTCKLWDAVN 318

Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            K       +  ++L   F+ T   I +   D   +++     +    + GH   ++   
Sbjct: 319 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS 378

Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                      + D T R+WD    A   +C+++ +G+       +  C+++  G  I  
Sbjct: 379 FNPQGNRLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 430

Query: 943 GSADRFVYVW 972
           GS D    +W
Sbjct: 431 GSKDNTCRIW 440



 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 2/206 (0%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
           +  L+GH  E+    F+ +G+ + +  FD  + +W        Y TL GH   +    +N
Sbjct: 238 VFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY-TLIGHCAEISSAVFN 296

Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567
            D S++ + S DKT  +WD+  G+ V  L GH    ++SC+      +L+ T S DGT +
Sbjct: 297 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 354

Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
           ++    +  +   + +  ++  ++FN   +++++G  D   ++WD +  +    + GH D
Sbjct: 355 IFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTD 414

Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822
            +               + DNT R+W
Sbjct: 415 EIFSCAFNYKGDIIITGSKDNTCRIW 440



 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
 Frame = +1

Query: 541  TGSDDGTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNK 714
            TGS D T KLWD      + T +    V+ A+ FN+   D+I +G  D   K+W +   K
Sbjct: 135  TGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGK 194

Query: 715  LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
              +T RGH   +               +MD T ++WD++         ++F    H+ E 
Sbjct: 195  CYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLTGHSAE- 247

Query: 895  NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
             ++  S++  G++I  GS D  V VW+  + R +Y L GH   I+   F+ D
Sbjct: 248  -IISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWD 298


>ref|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            3 [Bos taurus]
          Length = 607

 Score =  120 bits (300), Expect = 2e-27
 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 317  VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 377  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 436  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 490  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 545

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            GS +AAG+A+  +Y+W+  S ++   L   H+ SIN VA+ P
Sbjct: 546  GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 587


>ref|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            6 [Bos taurus]
          Length = 588

 Score =  120 bits (300), Expect = 2e-27
 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 298  VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 358  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 417  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 471  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 526

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            GS +AAG+A+  +Y+W+  S ++   L   H+ SIN VA+ P
Sbjct: 527  GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 568


>ref|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            5 [Bos taurus]
          Length = 623

 Score =  120 bits (300), Expect = 2e-27
 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 333  VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 393  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 452  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 506  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 561

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            GS +AAG+A+  +Y+W+  S ++   L   H+ SIN VA+ P
Sbjct: 562  GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 603


>ref|NP_001033649.1| WD repeat domain 51A [Bos taurus]
          Length = 407

 Score =  118 bits (295), Expect = 9e-27
 Identities = 83/273 (30%), Positives = 120/273 (43%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH   V    F  N   LAS   D  +++W++      Y    GH  AV  ++++  G +
Sbjct: 17   GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-FAGHKDAVTCVNFSPSGHL 75

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L S S DKTV +W           + HT+ V S +    G   V T SDD TVK+W   R
Sbjct: 76   LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWSTHR 134

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            +K      Q+   V    F+     I+S   D  +K+WD    +  ++   H   VT   
Sbjct: 135  QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                        MDNTV+VWDVR      R ++ +Q  +H+   N L  S+ P G+ +  
Sbjct: 195  FHPSGTCIAAAGMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLVT 246

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R+LY L GH G    VAF
Sbjct: 247  ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279



 Score =  108 bits (271), Expect = 5e-24
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 3/253 (1%)
 Frame = +1

Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
           +GH+  V C  F P+G  LAS   D+ + +W  NV G+       + H+  V  +H+ +D
Sbjct: 58  AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           G    +AS DKTV VW +   + +  L  H ++V  C       +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173

Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
              +  + ++ ++   V  V F+ +   I + G+DN +KVWD+R ++L    + H+ +V 
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         + D+T+++ D+     + R +      +H  +      ++S  G  
Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285

Query: 934 IAAGSADRFVYVW 972
            A+G +D  V VW
Sbjct: 286 FASGGSDEQVMVW 298



 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 4/236 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  AV  + ++ +   L S S D  + VW  +   R  R  GH   V +C        
Sbjct: 16   KGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAV-TCVNFSPSGH 74

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ +GS D TV++W    K     F+ +T  V +V F       ++   D  +KVW   +
Sbjct: 75   LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHR 134

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
             K  +++  H + V               + D TV++WD           K  +  VH++
Sbjct: 135  QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183

Query: 889  EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             ++   +    + P G+ IAA   D  V VWD  + R+L     H+ ++N ++FHP
Sbjct: 184  CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239



 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
           LS H   V C KF P+G  + SA  D+ + LW+      V+  C+       H G V  +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193

Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
            ++  G+ + +A  D TV VWD  T   ++  + H++ VN+      G  LV T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLV-TASSDST 252

Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
           +K+ D+ +   + T   +      V F+ T +   SGG D  + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298


>ref|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos taurus]
          Length = 616

 Score =  110 bits (274), Expect = 2e-24
 Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 2/277 (0%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
            +L  H  EV   +F PN S LA+ G DRLILLWNV  G      TL+G  G++  + ++ 
Sbjct: 328  VLDAHLSEVSAVRFGPNSSLLATGGADRLILLWNVVGGHLKANQTLEGAGGSITSVDFDP 387

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +A+ +K   +W     +  + L GHT  V +        Q V TGS D TVK W
Sbjct: 388  SGSQLLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAV-TGSRDRTVKEW 446

Query: 574  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            D+ +    +T         V   D    IISG  D  I+ WD R  + T  +      VT
Sbjct: 447  DLCRAYCSRTINVLSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPRCTQVIPVQG-RVT 503

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                          + D+T++V D+R         ++F+ +      +  +  +SPD S 
Sbjct: 504  SLSLSHDQLHLLSCSRDDTLKVIDLR----VSNIRQVFRADGFKCGSDWTKAVFSPDRSY 559

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPG-HAGSINEVAF 1041
              AGS D  +Y+W+  + ++   L G H+ ++N VA+
Sbjct: 560  ALAGSWDGALYIWNVDTGKLESSLRGPHSAAVNAVAW 596


>ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus]
          Length = 495

 Score =  108 bits (270), Expect = 7e-24
 Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH+  +    F PNG  LA+  +D  ++LW++      +  + GH   +  + ++  G++
Sbjct: 33   GHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYV-GHKDVITSVQFSPLGNL 91

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L SAS D+T+ +W  +   +    K HT+ V S   +  G Q + + S+D ++K+W++ R
Sbjct: 92   LASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLASASEDKSIKVWNMYR 150

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            ++     +++T+ V    F+     I+S   D  IK+WD    +                
Sbjct: 151  QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVA 210

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                         D+TV++WD+R      + ++ +Q  VH+   N +  S+ P G+ +  
Sbjct: 211  FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYLIT 262

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R++Y L GH G +  V+F
Sbjct: 263  ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSF 295



 Score =  105 bits (262), Expect = 6e-23
 Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 1/268 (0%)
 Frame = +1

Query: 202  QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 381
            QA      GH+  +   +F P G+ LASA  DR I LW +       +  K H+  V  +
Sbjct: 67   QARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLW-IPDKRGKSSEFKAHTAPVRSV 125

Query: 382  HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
             ++ DG  L SAS DK++ VW+      +  L  HT +V  C       +L+ + S+D T
Sbjct: 126  DFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 184

Query: 562  VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
            +K+WD   K  +  F +       V FN     I S G D+ +K+WD+R NKL    + H
Sbjct: 185  IKIWDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 244

Query: 739  ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
            +  V               + D T+++ D+     + R +   QG+       +   S+S
Sbjct: 245  SGGVNCVSFHPSGNYLITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 296

Query: 919  PDGSKIAAGSADRFVYVWDYTSRRILYK 1002
              G    +G AD  V +W      + YK
Sbjct: 297  KGGELFTSGGADAQVLLWRTNFDELNYK 324



 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 3/235 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  A+  + ++ +G  L + S D  + +W      R  R  GH   + S   +  G  
Sbjct: 32   KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLG-N 90

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ + S D T++LW   K+     F+ +T  V +V F+     + S   D  IKVW++ +
Sbjct: 91   LLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYR 150

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 882
             +  Y++  H   V               + D T+++WD       ++CV  F   V   
Sbjct: 151  QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDFVGFA 206

Query: 883  NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
            NF       +++P+G+ IA+  +D  V +WD    ++L     H+G +N V+FHP
Sbjct: 207  NF------VAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHP 255


>ref|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 577

 Score =  108 bits (269), Expect = 9e-24
 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
 Frame = +1

Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 396
           +L GH G VY  +F  + S L S   D  I  W++ G   N    +GH+  V +L  +  
Sbjct: 325 VLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL-GSFTNTVLYQGHAYPVWDLDISPH 383

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
                S S D+T  +W  +    ++   GH + V+ C         + TGS D TV+LW 
Sbjct: 384 SLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVD-CVKFHPNSNYLATGSTDKTVRLWS 442

Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            ++  +++ F  +   VL++ F+  S  + S G D  +K+WDL    L   +RGH DS+T
Sbjct: 443 TQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDSIT 502

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVR 831
                         +MDN+VRVWD+R
Sbjct: 503 SLTFSSDSSLIASASMDNSVRVWDIR 528



 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 41/125 (32%), Positives = 67/125 (53%)
 Frame = +1

Query: 208 PIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHY 387
           P+ + +GH  +V C KFHPN + LA+   D+ + LW+     ++     GH G V+ L +
Sbjct: 406 PLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQ-QGNSVRLFTGHRGPVLSLAF 464

Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
           + +   L SA  D+ + +WD  +G   K L+GHT  + S         L+ + S D +V+
Sbjct: 465 SPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDSITS-LTFSSDSSLIASASMDNSVR 523

Query: 568 LWDIR 582
           +WDIR
Sbjct: 524 VWDIR 528



 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
 Frame = +1

Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
           +L  GH   V+     P+    AS   DR   LW+ +          GH   V  + ++ 
Sbjct: 366 VLYQGHAYPVWDLDISPHSLYFASGSHDRTARLWS-FDRTYPLRIFAGHLADVDCVKFHP 424

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           + + L + STDKTV +W ++ G  V+   GH   V S   +     L   G +D  +KLW
Sbjct: 425 NSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAG-EDQRLKLW 483

Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLR 705
           D+      +  + +T  + ++TF+  S  I S  +DN ++VWD+R
Sbjct: 484 DLASGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVWDIR 528



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 3/266 (1%)
 Frame = +1

Query: 262  PNGSTLASAGFDR-LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVA 438
            PN   LA AGFD   I LW++   C      K H   V  +H   D    F    D    
Sbjct: 266  PNSKLLA-AGFDNSCIKLWSL---CSEKLKSKPHQVDVSRIHLACD----FLEEEDDE-- 315

Query: 439  VWDSETGERVKRLKGHTSFVNSC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-N 612
              D   G  +K L+GH   V S  + A     L C  S+D +++ WD+        +Q +
Sbjct: 316  --DDNAGTEMKVLRGHCGPVYSTRFLADSSGLLSC--SEDMSIRYWDLGSFTNTVLYQGH 371

Query: 613  TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXX 792
             Y V  +  +  S    SG  D   ++W   +        GH   V              
Sbjct: 372  AYPVWDLDISPHSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLAT 431

Query: 793  NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVW 972
             + D TVR+W  +    +   V++F G+       +L  ++SP+   +A+   D+ + +W
Sbjct: 432  GSTDKTVRLWSTQ----QGNSVRLFTGH----RGPVLSLAFSPNSKYLASAGEDQRLKLW 483

Query: 973  DYTSRRILYKLPGHAGSINEVAFHPD 1050
            D  S  +  +L GH  SI  + F  D
Sbjct: 484  DLASGTLYKELRGHTDSITSLTFSSD 509


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,806,363
Number of Sequences: 33508
Number of extensions: 844483
Number of successful extensions: 5878
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3939
length of database: 16,112,626
effective HSP length: 102
effective length of database: 12,694,810
effective search space used: 3148312880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-007057
         (1054 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can...   608   e-174
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...   140   2e-33
Alignment   gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]   130   2e-30
Alignment   gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof...   119   5e-27
Alignment   gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like...   119   6e-27
Alignment   gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like...   119   6e-27
Alignment   gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like...   119   6e-27
Alignment   gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can...   112   8e-25
Alignment   gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi...   108   9e-24
Alignment   gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi...   108   9e-24

>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris]
          Length = 358

 Score =  608 bits (1568), Expect = e-174
 Identities = 297/340 (87%), Positives = 298/340 (87%)
 Frame = +1

Query: 34   MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
            MIEQQKRKGPELPLVPVKRQRHE                            RCSSLQAPI
Sbjct: 1    MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQTAPGALLQAGPPRCSSLQAPI 60

Query: 214  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
            MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61   MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
            DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180

Query: 574  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241  GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 301  IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris]
          Length = 334

 Score =  140 bits (353), Expect = 2e-33
 Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 5/281 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            L+GH   V   KF PNG  LAS+  D+LI +W  Y D     T+ GH   + ++ +++D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
            ++L SAS DKT+ +WD  +G+ +K LKGH+++V  C      PQ  L+ +GS D +V++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156

Query: 574  DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDI-KVWDLRQNKLTYTMRGHADS 747
            D++    ++T   ++  V AV FN     I+S   D    K  +     +   +      
Sbjct: 157  DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPP 216

Query: 748  VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
            V+               +DNT+++WD      K +C+K + G  H  EK  +  ++S  G
Sbjct: 217  VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270

Query: 928  SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             K I +GS D  VY+W+  ++ I+ KL GH   +   A HP
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311



 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W+V  G C    TL  HS  V  +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S+S D       +     +K +    +   S        + +   + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             K   ++T+   +N    +   F+ T  + I+SG  DN + +W+L+  ++   ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 37/147 (25%), Positives = 67/147 (45%)
 Frame = +1

Query: 610  NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
            +T  V +V F+   + + S   D  IK+W     K   T+ GH   ++            
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 790  XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
              + D T+++WDV       +C+K  +G+       +  C+++P  + I +GS D  V +
Sbjct: 104  SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 970  WDYTSRRILYKLPGHAGSINEVAFHPD 1050
            WD  + + L  LP H+  ++ V F+ D
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRD 182



 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
 Frame = +1

Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN- 390
           ++L      V   KF PNG  + +A  D  + LW+ Y       T  GH      +  N 
Sbjct: 208 LILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266

Query: 391 --TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV--NSCYPARRGPQLVCTGS--D 552
             T G  + S S D  V +W+ +T E V++L+GHT  V   +C+P      ++ + +  +
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE---NIIASAALEN 323

Query: 553 DGTVKLW 573
           D T+KLW
Sbjct: 324 DKTIKLW 330


>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]
          Length = 415

 Score =  130 bits (327), Expect = 2e-30
 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 2/263 (0%)
 Frame = +1

Query: 265  NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
            +GS   +  +DR   LW+     +   TL+GH   V  + +N   G  + + S DKT  +
Sbjct: 103  SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161

Query: 442  WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
            W  ETG+     +GHT+ +  C        LV TGS D T KLWDI+    + T + ++ 
Sbjct: 162  WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSA 220

Query: 619  QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
            ++++++FN + D+I++G  D+ + VW+    +  YT+ GH   ++              +
Sbjct: 221  EIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGS 280

Query: 799  MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978
            MD T  +WD    A   +CV    G+    +  +L   +   G  IA  SAD    V+  
Sbjct: 281  MDKTCMLWD----ASNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARVFSA 332

Query: 979  TSRRILYKLPGHAGSINEVAFHP 1047
             +R+ L KL GH G I++++F+P
Sbjct: 333  ATRKCLTKLEGHEGEISKISFNP 355



 Score =  128 bits (322), Expect = 8e-30
 Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
            L GH   VY   F+ P G  +A+  FD+   LW+V  G C  Y T +GH+  ++ L +N 
Sbjct: 130  LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
              +++ + S D T  +WD ++GE V  L+GH++ + S      G ++V TGS D TV +W
Sbjct: 188  QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV-TGSFDHTVAVW 246

Query: 574  DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
            +      + T   +  ++ +  FN     I++G +D    +WD    K   T+ GH D +
Sbjct: 247  EADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEI 306

Query: 751  TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
                           + D T RV+     A   +C+   +G+    E  + + S++P G+
Sbjct: 307  LDSCFDYTGKLIATASADGTARVFS----AATRKCLTKLEGH----EGEISKISFNPQGN 358

Query: 931  KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044
            ++  GSAD    +WD  + + L  L GH   I   AF+
Sbjct: 359  RLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFN 396



 Score =  115 bits (288), Expect = 7e-26
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
 Frame = +1

Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
           GH  E+ C  F+P  + +A+   D    LW++    +   TL+GHS  ++ L +NT G  
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLRGHSAEIISLSFNTSGDR 233

Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
           + + S D TVAVW+++TG +V  L GH + ++S         L+ TGS D T  LWD   
Sbjct: 234 IVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSAL-FNWDCSLILTGSMDKTCMLWDASN 292

Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
              + T   +  ++L   F+ T   I +   D   +V+     K    + GH   ++   
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS 352

Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                      + D T R+WD    A   +C+++ +G+       +  C+++  G  I  
Sbjct: 353 FNPQGNRLLTGSADETARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 404

Query: 943 GSADRFVYVW 972
           GS D    +W
Sbjct: 405 GSKDNTCRIW 414



 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
           +  L GH  E+    F+ +G  + +  FD  + +W        Y TL GH   +    +N
Sbjct: 212 VFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY-TLIGHCAEISSALFN 270

Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567
            D S++ + S DKT  +WD+  G+ V  L GH    ++SC+      +L+ T S DGT +
Sbjct: 271 WDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 328

Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
           ++    +  +   + +  ++  ++FN   +++++G  D   ++WD +  +    + GH D
Sbjct: 329 VFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTD 388

Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822
            +               + DNT R+W
Sbjct: 389 EIFSCAFNYKGDIIITGSKDNTCRIW 414



 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 12/227 (5%)
 Frame = +1

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP----------QLVCTGSDD 555
            L +AS  + V +      +++++   HT ++     A   P              TGS D
Sbjct: 54   LITASRSEQVKLLIQRLQDKLRQHSNHTFYLFKVLRAHILPLTNVALNKSGSCFITGSYD 113

Query: 556  GTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTM 729
             T KLWD      + T +    V+ A+ FN+   D+I +G  D   K+W +   K  +T 
Sbjct: 114  RTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTF 173

Query: 730  RGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC 909
            RGH   +               +MD T ++WD++         ++F    H+ E  ++  
Sbjct: 174  RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLRGHSAE--IISL 225

Query: 910  SWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
            S++  G +I  GS D  V VW+  + R +Y L GH   I+   F+ D
Sbjct: 226  SFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWD 272


>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
            familiaris]
          Length = 406

 Score =  119 bits (298), Expect = 5e-27
 Identities = 83/273 (30%), Positives = 122/273 (44%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH   +    F  N   LAS   D  +++W++      Y    GH  AV  ++++  G +
Sbjct: 17   GHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-FAGHKDAVTCVNFSPSGHL 75

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L S S DKTV +W           + HT+ V S +    G  LV T SDD TVK+W   R
Sbjct: 76   LASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            +K      Q+   V    F+     I+S   D  +K+WD    +  ++   H   VT   
Sbjct: 135  QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                       +MDNTV+VWDVR      R ++ +Q  +H+   N L  S+ P G+ +  
Sbjct: 195  FHPSGTCIAAASMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLLT 246

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R+LY L GH G    VAF
Sbjct: 247  ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279



 Score =  107 bits (268), Expect = 1e-23
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 3/253 (1%)
 Frame = +1

Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
           +GH+  V C  F P+G  LAS   D+ + +W  NV G+       + H+  V  +H+ +D
Sbjct: 58  AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGES---TVFRAHTATVRSVHFCSD 114

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           G  L +AS DKTV VW +   + +  L  H ++V  C       +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CARFSPDGRLIVSASDDKTVKLWD 173

Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
              +  + ++ ++   V  V F+ +   I +  +DN +KVWD+R ++L    + H+ +V 
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN 233

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         + D+T+++ D+     + R +      +H  +      ++S  G  
Sbjct: 234 ALSFHPSGNYLLTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285

Query: 934 IAAGSADRFVYVW 972
            A+G +D  V VW
Sbjct: 286 FASGGSDEQVMVW 298



 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 4/236 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  A+  + ++ +   L S S D  + VW  +   R  R  GH   V +C        
Sbjct: 16   KGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAV-TCVNFSPSGH 74

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ +GS D TV++W    K     F+ +T  V +V F      +++   D  +KVW   +
Sbjct: 75   LLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
             K  +++  H + V               + D TV++WD           K  +  VH++
Sbjct: 135  QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183

Query: 889  EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             ++   +    + P G+ IAA S D  V VWD  + R+L     H+ ++N ++FHP
Sbjct: 184  CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
           LS H   V C +F P+G  + SA  D+ + LW+      V+  C+       H G V  +
Sbjct: 141 LSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193

Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
            ++  G+ + +AS D TV VWD  T   ++  + H++ VN+      G  L+ T S D T
Sbjct: 194 DFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLL-TASSDST 252

Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
           +K+ D+ +   + T   +      V F+ T +   SGG D  + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298


>ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            3 [Canis familiaris]
          Length = 623

 Score =  119 bits (297), Expect = 6e-27
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 333  IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 393  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 452  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 506  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 561

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            G  +AAGSA+  +Y+W   S ++   L   H  SIN VA+ P
Sbjct: 562  GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 603


>ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            1 [Canis familiaris]
          Length = 588

 Score =  119 bits (297), Expect = 6e-27
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 298  IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 358  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 417  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 471  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 526

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            G  +AAGSA+  +Y+W   S ++   L   H  SIN VA+ P
Sbjct: 527  GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 568


>ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
            2 [Canis familiaris]
          Length = 607

 Score =  119 bits (297), Expect = 6e-27
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW V+GD C+   +L G +  +  + +++
Sbjct: 317  IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 377  AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 436  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ +++ D+R  A ++     F         +  R  +SPD
Sbjct: 490  KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 545

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            G  +AAGSA+  +Y+W   S ++   L   H  SIN VA+ P
Sbjct: 546  GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 587


>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris]
          Length = 833

 Score =  112 bits (279), Expect = 8e-25
 Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH+  +    F P+G  LA+A +D  ++LWN       +  + GH   V  + ++  G++
Sbjct: 371  GHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYV-GHKDVVTSVQFSPLGNL 429

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L SAS D+TV +W  +   +    K HT+ V S   +  G Q + T S+D ++K+W++ R
Sbjct: 430  LASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWNMYR 488

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            ++     +++T+ V    F+     I+S   D  IK+WD    +                
Sbjct: 489  QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVD 548

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                         D+TV++WD+R      + ++ +Q  VH+   N +  S+ P G+ I  
Sbjct: 549  FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYIIT 600

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R++Y L GH G +  V+F
Sbjct: 601  ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSF 633



 Score =  104 bits (259), Expect = 2e-22
 Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 1/258 (0%)
 Frame = +1

Query: 202  QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 381
            QA      GH+  V   +F P G+ LASA  DR + LW +       +  K H+  V  +
Sbjct: 405  QARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLW-IPDKRGKSSEFKAHTAPVRSV 463

Query: 382  HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
             ++ DG  L +AS DK++ VW+      +  L  HT +V  C       +L+ + S+D T
Sbjct: 464  DFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 522

Query: 562  VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
            +K+WD   K  +  F ++      V FN     I S G D+ +K+WD+R NKL    + H
Sbjct: 523  IKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 582

Query: 739  ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
            +  V               + D T+++ D+     + R +   QG+       +   S+S
Sbjct: 583  SGGVNCVSFHPSGNYIITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 634

Query: 919  PDGSKIAAGSADRFVYVW 972
              G   ++G AD  V +W
Sbjct: 635  KGGELFSSGGADTQVLLW 652



 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 3/235 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  A+  + ++  G  L +AS D  + +W+ +   R  R  GH   V S   +  G  
Sbjct: 370  KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLG-N 428

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ + S D TV+LW   K+     F+ +T  V +V F+     + +   D  IKVW++ +
Sbjct: 429  LLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYR 488

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 882
             +  Y++  H   V               + D T+++WD       ++CV  F  +V   
Sbjct: 489  QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDSVGFA 544

Query: 883  NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
            NF        ++P+G+ IA+  +D  V +WD    ++L     H+G +N V+FHP
Sbjct: 545  NF------VDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHP 593


>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
            p80 subunit B1) (p80 katanin) isoform 2 [Canis
            familiaris]
          Length = 655

 Score =  108 bits (270), Expect = 9e-24
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
 Frame = +1

Query: 448  SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
            ++T  +++ +  H S V+S    +   +L+ TG DD  V LW I K   I +   +T  V
Sbjct: 7    TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66

Query: 625  LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
             +V  N   + I++G     I+VWDL   K+  T+ GH  ++               + D
Sbjct: 67   ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126

Query: 805  NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981
              +++WD+R    ++ CV  ++G+        +RC  +SPDG  +A+ + D  V +WD T
Sbjct: 127  TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177

Query: 982  SRRILYKLPGHAGSINEVAFHPDK 1053
            + +++ + PGH G +N V FHP++
Sbjct: 178  AGKMMSEFPGHTGPVNVVEFHPNE 201



 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
 Frame = +1

Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
           +G  LA+ G D  + LW++    +   +L GH+  V  +  NT   ++ + S   ++ VW
Sbjct: 32  SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90

Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
           D E  + ++ L GH + + S      G + V +GS D  +KLWDIR+K  +  ++   Q 
Sbjct: 91  DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149

Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
           V  + F+     + S   D+ +K+WDL   K+     GH   V               + 
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975
           D T+R WD+  F     C++   G V +         ++PDG  + +G  D   VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260



 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
 Frame = +1

Query: 397  GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
            G +L +   D  V +W       +  L GHTS V S        +L+  GS  G++++WD
Sbjct: 33   GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91

Query: 577  IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            +     ++T   +   + ++ F+   + + SG  D +IK+WD+R+    +  RGH+ +V 
Sbjct: 92   LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                          A D+TV++WD+       + +  F G  H    N++   + P+   
Sbjct: 152  CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
            +A+GS+DR +  WD    +++  + G  G +  V F+PD
Sbjct: 204  LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
           L GH+  +    FHP G  +AS   D  I LW++   G    Y   +GHS AV  L ++ 
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           DG  L SA+ D TV +WD   G+ +    GHT  VN          L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216

Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
           D+ K   +   +     V +V FN     + SG  D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253


>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
            p80 subunit B1) (p80 katanin) isoform 1 [Canis
            familiaris]
          Length = 655

 Score =  108 bits (270), Expect = 9e-24
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
 Frame = +1

Query: 448  SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
            ++T  +++ +  H S V+S    +   +L+ TG DD  V LW I K   I +   +T  V
Sbjct: 7    TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66

Query: 625  LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
             +V  N   + I++G     I+VWDL   K+  T+ GH  ++               + D
Sbjct: 67   ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126

Query: 805  NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981
              +++WD+R    ++ CV  ++G+        +RC  +SPDG  +A+ + D  V +WD T
Sbjct: 127  TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177

Query: 982  SRRILYKLPGHAGSINEVAFHPDK 1053
            + +++ + PGH G +N V FHP++
Sbjct: 178  AGKMMSEFPGHTGPVNVVEFHPNE 201



 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
 Frame = +1

Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
           +G  LA+ G D  + LW++    +   +L GH+  V  +  NT   ++ + S   ++ VW
Sbjct: 32  SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90

Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
           D E  + ++ L GH + + S      G + V +GS D  +KLWDIR+K  +  ++   Q 
Sbjct: 91  DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149

Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
           V  + F+     + S   D+ +K+WDL   K+     GH   V               + 
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975
           D T+R WD+  F     C++   G V +         ++PDG  + +G  D   VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260



 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
 Frame = +1

Query: 397  GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
            G +L +   D  V +W       +  L GHTS V S        +L+  GS  G++++WD
Sbjct: 33   GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91

Query: 577  IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            +     ++T   +   + ++ F+   + + SG  D +IK+WD+R+    +  RGH+ +V 
Sbjct: 92   LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                          A D+TV++WD+       + +  F G  H    N++   + P+   
Sbjct: 152  CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
            +A+GS+DR +  WD    +++  + G  G +  V F+PD
Sbjct: 204  LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
           L GH+  +    FHP G  +AS   D  I LW++   G    Y   +GHS AV  L ++ 
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           DG  L SA+ D TV +WD   G+ +    GHT  VN          L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216

Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
           D+ K   +   +     V +V FN     + SG  D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,950,665
Number of Sequences: 33732
Number of extensions: 986232
Number of successful extensions: 6488
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4341
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 3876575502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-007057
         (1054 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo s...   599   e-171
Alignment   gi|NP_061942.2| WD repeat domain 5B [Homo sapiens]                   154   1e-37
Alignment   gi|NP_438172.1| WD repeat domain 5 [Homo sapiens]                    150   2e-36
Alignment   gi|NP_060058.1| WD repeat domain 5 [Homo sapiens]                    150   2e-36
Alignment   gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]        129   4e-30
Alignment   gi|NP_056241.2| WD repeat domain 51A [Homo sapiens]                  120   1e-27
Alignment   gi|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens]     120   3e-27
Alignment   gi|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens]     120   3e-27
Alignment   gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...   119   6e-27
Alignment   gi|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...   116   3e-26

>ref|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
          Length = 357

 Score =  599 bits (1544), Expect = e-171
 Identities = 294/340 (86%), Positives = 297/340 (87%)
 Frame = +1

Query: 34   MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
            MI+QQKRKGPELPLVPVKRQRHE                            RCSSLQAPI
Sbjct: 1    MIDQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPP-RCSSLQAPI 59

Query: 214  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
            MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 60   MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 119

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
            DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPAR+ PQLVCTGSDDGTVKLW
Sbjct: 120  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARKSPQLVCTGSDDGTVKLW 179

Query: 574  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 180  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 239

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 240  GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 299

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 300  IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 339


>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens]
          Length = 330

 Score =  154 bits (389), Expect = 1e-37
 Identities = 94/279 (33%), Positives = 147/279 (52%), Gaps = 3/279 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            L GH   V   KF PNG  LAS+  DRLI++W  Y D     TL GH+  + ++ +++D 
Sbjct: 37   LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDS 95

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
            S L SAS DKT+ +WD  +G+ +K LKGH+++V  C        L+ +GS D TVK+W++
Sbjct: 96   SRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154

Query: 580  RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-SVT 753
            +    ++T   ++  V AV FN +   I+SG  D   ++WD    +   T+    +  V+
Sbjct: 155  KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                           +DNT+++WD      + RC+K + G  H  EK  +  ++S  G K
Sbjct: 215  FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCIFANFSVTGGK 268

Query: 934  -IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             I +GS D  VY+W+  ++ I+ KL GH   +   A HP
Sbjct: 269  WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHP 307



 Score =  104 bits (259), Expect = 1e-22
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W V  G C    TL  HS  V  +H+N  
Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCS 178

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S S D    +WD+ +G+ +K L    +   S        + + T + D T+KLWD
Sbjct: 179 GSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             +   ++T+   +N    +   F+ T  + I+SG  DN + +W+L+  ++   ++GH D
Sbjct: 239 YSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 298

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T+++W
Sbjct: 299 VVISAACHPTENLIASAALENDKTIKLW 326


>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  150 bits (378), Expect = 2e-36
 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            L+GH   V   KF PNG  LAS+  D+LI +W  Y D     T+ GH   + ++ +++D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
            ++L SAS DKT+ +WD  +G+ +K LKGH+++V  C      PQ  L+ +GS D +V++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156

Query: 574  DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
            D++    ++T   ++  V AV FN     I+S   D   ++WD    +   T+    +  
Sbjct: 157  DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 748  VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
            V+               +DNT+++WD      K +C+K + G  H  EK  +  ++S  G
Sbjct: 217  VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270

Query: 928  SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             K I +GS D  VY+W+  ++ I+ KL GH   +   A HP
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311



 Score =  106 bits (265), Expect = 3e-23
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W+V  G C    TL  HS  V  +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S+S D    +WD+ +G+ +K L    +   S        + +   + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             K   ++T+   +N    +   F+ T  + I+SG  DN + +W+L+  ++   ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 37/147 (25%), Positives = 67/147 (45%)
 Frame = +1

Query: 610  NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
            +T  V +V F+   + + S   D  IK+W     K   T+ GH   ++            
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 790  XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
              + D T+++WDV       +C+K  +G+       +  C+++P  + I +GS D  V +
Sbjct: 104  SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 970  WDYTSRRILYKLPGHAGSINEVAFHPD 1050
            WD  + + L  LP H+  ++ V F+ D
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRD 182


>ref|NP_060058.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  150 bits (378), Expect = 2e-36
 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            L+GH   V   KF PNG  LAS+  D+LI +W  Y D     T+ GH   + ++ +++D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
            ++L SAS DKT+ +WD  +G+ +K LKGH+++V  C      PQ  L+ +GS D +V++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156

Query: 574  DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
            D++    ++T   ++  V AV FN     I+S   D   ++WD    +   T+    +  
Sbjct: 157  DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 748  VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
            V+               +DNT+++WD      K +C+K + G  H  EK  +  ++S  G
Sbjct: 217  VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270

Query: 928  SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             K I +GS D  VY+W+  ++ I+ KL GH   +   A HP
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311



 Score =  106 bits (265), Expect = 3e-23
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W+V  G C    TL  HS  V  +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S+S D    +WD+ +G+ +K L    +   S        + +   + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             K   ++T+   +N    +   F+ T  + I+SG  DN + +W+L+  ++   ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 37/147 (25%), Positives = 67/147 (45%)
 Frame = +1

Query: 610  NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
            +T  V +V F+   + + S   D  IK+W     K   T+ GH   ++            
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 790  XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
              + D T+++WDV       +C+K  +G+       +  C+++P  + I +GS D  V +
Sbjct: 104  SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 970  WDYTSRRILYKLPGHAGSINEVAFHPD 1050
            WD  + + L  LP H+  ++ V F+ D
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRD 182


>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
          Length = 415

 Score =  129 bits (324), Expect = 4e-30
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
            L GH   VY   F+ P G  +A+  FD+   LW+V  G C  Y T +GH+  ++ L +N 
Sbjct: 130  LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
              +++ + S D T  +WD + GE V  L+GH++ + S      G +++ TGS D TV +W
Sbjct: 188  QSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII-TGSFDHTVVVW 246

Query: 574  DIRKKAAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
            D      +     +  ++ + +FN     I++G +D   K+WD    K   T+ GH D +
Sbjct: 247  DADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEI 306

Query: 751  TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
                           + D T R++     A   +C+   +G+    E  + + S++P G+
Sbjct: 307  LDSCFDYTGKLIATASADGTARIFS----AATRKCIAKLEGH----EGEISKISFNPQGN 358

Query: 931  KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044
             +  GS+D+   +WD  + + L  L GH   I   AF+
Sbjct: 359  HLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 396



 Score =  127 bits (319), Expect = 2e-29
 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%)
 Frame = +1

Query: 265  NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
            +GS   +  +DR   LW+     +   TL+GH   V  + +N   G  + + S DKT  +
Sbjct: 103  SGSCFITGSYDRTCKLWDTASG-EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161

Query: 442  WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
            W  ETG+     +GHT+ +  C        LV TGS D T KLWDI+    + T + ++ 
Sbjct: 162  WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSA 220

Query: 619  QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
            ++++++FN + D+II+G  D+ + VWD    +    + GH   ++              +
Sbjct: 221  EIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGS 280

Query: 799  MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978
            MD T ++WD    A   +CV    G+    +  +L   +   G  IA  SAD    ++  
Sbjct: 281  MDKTCKLWD----ATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 332

Query: 979  TSRRILYKLPGHAGSINEVAFHP 1047
             +R+ + KL GH G I++++F+P
Sbjct: 333  ATRKCIAKLEGHEGEISKISFNP 355



 Score =  119 bits (297), Expect = 6e-27
 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
 Frame = +1

Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
           GH  E+ C  F+P  + +A+   D    LW++    + Y TL+GHS  ++ L +NT G  
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVY-TLRGHSAEIISLSFNTSGDR 233

Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
           + + S D TV VWD++TG +V  L GH + ++S         L+ TGS D T KLWD   
Sbjct: 234 IITGSFDHTVVVWDADTGRKVNILIGHCAEISSA-SFNWDCSLILTGSMDKTCKLWDATN 292

Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
              + T   +  ++L   F+ T   I +   D   +++     K    + GH   ++   
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS 352

Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                      + D T R+WD    A   +C+++ +G+       +  C+++  G+ +  
Sbjct: 353 FNPQGNHLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGNIVIT 404

Query: 943 GSADRFVYVW 972
           GS D    +W
Sbjct: 405 GSKDNTCRIW 414



 Score =  111 bits (278), Expect = 9e-25
 Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 1/235 (0%)
 Frame = +1

Query: 340  YATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPAR 519
            +  LK H   +  +  N  GS   + S D+T  +WD+ +GE +  L+GH + V +     
Sbjct: 85   FKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNN 144

Query: 520  RGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
                 + TGS D T KLW +       TF+ +T +++ ++FN  S  + +G +D   K+W
Sbjct: 145  PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLW 204

Query: 697  DLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGN 876
            D++  +  YT+RGH+  +               + D+TV VWD    A   R V I  G 
Sbjct: 205  DIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWD----ADTGRKVNILIG- 259

Query: 877  VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             H  E +    +W  D S I  GS D+   +WD T+ + +  L GH   I +  F
Sbjct: 260  -HCAEISSASFNW--DCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCF 311



 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCD---NYATLKGHSGAVMEL 381
           +  L GH  E+    F+ +G  + +  FD  +++W    D D       L GH   +   
Sbjct: 212 VYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVW----DADTGRKVNILIGHCAEISSA 267

Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDG 558
            +N D S++ + S DKT  +WD+  G+ V  L GH    ++SC+      +L+ T S DG
Sbjct: 268 SFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYT--GKLIATASADG 325

Query: 559 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735
           T +++    +  I   + +  ++  ++FN   + +++G  D   ++WD +  +    + G
Sbjct: 326 TARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385

Query: 736 HADSVTXXXXXXXXXXXXXNAMDNTVRVW 822
           H D +               + DNT R+W
Sbjct: 386 HTDEIFSCAFNYKGNIVITGSKDNTCRIW 414



 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 22/261 (8%)
 Frame = +1

Query: 334  DNYATLKGHSGAVMELHYNTDGSML----------FSASTDKTVAVWDSETGERVKRLKG 483
            + +  LK  S  +++L  +TD S L           +AS  + V +      E++ +   
Sbjct: 20   EKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSN 79

Query: 484  HTSFVNSCYPARRGP----------QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL-A 630
            HT ++     A   P              TGS D T KLWD      + T +    V+ A
Sbjct: 80   HTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYA 139

Query: 631  VTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDN 807
            + FN+   D+I +G  D   K+W +   K  +T RGH   +               +MD 
Sbjct: 140  IAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDT 199

Query: 808  TVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSR 987
            T ++WD+      +   +++    H+ E  ++  S++  G +I  GS D  V VWD  + 
Sbjct: 200  TAKLWDI------QNGEEVYTLRGHSAE--IISLSFNTSGDRIITGSFDHTVVVWDADTG 251

Query: 988  RILYKLPGHAGSINEVAFHPD 1050
            R +  L GH   I+  +F+ D
Sbjct: 252  RKVNILIGHCAEISSASFNWD 272


>ref|NP_056241.2| WD repeat domain 51A [Homo sapiens]
          Length = 407

 Score =  120 bits (302), Expect = 1e-27
 Identities = 84/273 (30%), Positives = 122/273 (44%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH   V C  F  N   LAS   D  +++W++      Y    GH  AV  ++++  G +
Sbjct: 17   GHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHL 75

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L S S DKTV +W           + HT+ V S +    G   V T SDD TVK+W   R
Sbjct: 76   LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWATHR 134

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            +K      Q+   V    F+     I+S   D  +K+WD    +  ++   H   VT   
Sbjct: 135  QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD 194

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                        MDNTV+VWDVR +    R ++ +Q  +H+   N L  S+ P G+ +  
Sbjct: 195  FHPSGTCIAAAGMDNTVKVWDVRTY----RLLQHYQ--LHSAAVNGL--SFHPSGNYLIT 246

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R+LY L GH G    VAF
Sbjct: 247  ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279



 Score =  106 bits (265), Expect = 3e-23
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 3/253 (1%)
 Frame = +1

Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
           +GH+  V C  F P+G  LAS   D+ + +W  NV G+       + H+  V  +H+ +D
Sbjct: 58  TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           G    +AS DKTV VW +   + +  L  H ++V  C       +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173

Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
              +  + ++ ++   V  V F+ +   I + G+DN +KVWD+R  +L    + H+ +V 
Sbjct: 174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVN 233

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         + D+T+++ D+     + R +      +H  +      ++S  G  
Sbjct: 234 GLSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285

Query: 934 IAAGSADRFVYVW 972
            A+G +D  V VW
Sbjct: 286 FASGGSDEQVMVW 298



 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 4/236 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  AV  + ++ +   L S S D  + VW  +   R  R  GH   V +C        
Sbjct: 16   KGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAV-TCVNFSPSGH 74

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ +GS D TV++W    K     F+ +T  V +V F       ++   D  +KVW   +
Sbjct: 75   LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR 134

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
             K  +++  H + V               + D TV++WD           K  +  VH++
Sbjct: 135  QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KSSRECVHSY 183

Query: 889  EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             ++   +    + P G+ IAA   D  V VWD  + R+L     H+ ++N ++FHP
Sbjct: 184  CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHP 239



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
           LS H   V C KF P+G  + SA  D+ + LW+      V+  C+       H G V  +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCE-------HGGFVTYV 193

Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
            ++  G+ + +A  D TV VWD  T   ++  + H++ VN       G  L+ T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHPSGNYLI-TASSDST 252

Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
           +K+ D+ +   + T   +      V F+ T +   SGG D  + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298


>ref|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens]
          Length = 504

 Score =  120 bits (300), Expect = 3e-27
 Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
 Frame = +1

Query: 211  IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
            + +   H+GEV   +F P    LA+ G DR + LW V+G+ C+   +L G +  +  + +
Sbjct: 212  LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 271

Query: 388  NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
            ++ GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+K
Sbjct: 272  DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 330

Query: 568  LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
            LWD+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M   
Sbjct: 331  LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 384

Query: 739  ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
               +T              + D+ ++V D+R  A K+     F         +  R  +S
Sbjct: 385  LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 440

Query: 919  PDGSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            PDGS +AAGSA+  +Y+W   + ++   L   H+ SIN VA+ P
Sbjct: 441  PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 484


>ref|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens]
          Length = 523

 Score =  120 bits (300), Expect = 3e-27
 Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
 Frame = +1

Query: 211  IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
            + +   H+GEV   +F P    LA+ G DR + LW V+G+ C+   +L G +  +  + +
Sbjct: 231  LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 290

Query: 388  NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
            ++ GS L +AS D    +W  +       L GH+  V S        ++V +GS D T+K
Sbjct: 291  DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 349

Query: 568  LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
            LWD+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M   
Sbjct: 350  LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 403

Query: 739  ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
               +T              + D+ ++V D+R  A K+     F         +  R  +S
Sbjct: 404  LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 459

Query: 919  PDGSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            PDGS +AAGSA+  +Y+W   + ++   L   H+ SIN VA+ P
Sbjct: 460  PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 503


>ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score =  119 bits (297), Expect = 6e-27
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 3/235 (1%)
 Frame = +1

Query: 358  HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
            H G V    ++ DG ML + S D  V  W++ +G+ + RL GHT  V  C  +  G  L 
Sbjct: 20   HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78

Query: 538  CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
             + S D TV+LWD+ +   ++  +   + V  V+F+  S Q+ SGG D  + +WD++  +
Sbjct: 79   ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138

Query: 715  LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAP--KERCVKIFQGNVHNF 888
            +   + GH DS+               + D+TVR+WD+R   P    + ++   GN+   
Sbjct: 139  MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNI--- 195

Query: 889  EKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
                  C        +A+GS D+ +++W  T+  +L +L GH   +  +AF PD+
Sbjct: 196  -----SCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245



 Score =  102 bits (254), Expect = 5e-22
 Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 5/251 (1%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
           L GH G V  C+F P+G   ASA  D  + LW+V         LKGH  +V  + ++ D 
Sbjct: 59  LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117

Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 573
             L S   DK V +WD ++G+ ++ L GH   + S   +   P + C  TGS D TV++W
Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVRIW 174

Query: 574 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
           D+R      + Q  +     ++      S  + SG  D  I +W    + L   ++GH  
Sbjct: 175 DLRMVTPAVSHQALEGHSGNISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234

Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
            V                    V+VWD        +C++  +  V +       C+++PD
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287

Query: 925 GSKIAAGSADR 957
           G  + +G+AD+
Sbjct: 288 GKILVSGAADQ 298



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 6/280 (2%)
 Frame = +1

Query: 229  HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408
            H GEV    F P+G  L +   D  +  W           L GH+G V    ++ DG + 
Sbjct: 20   HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78

Query: 409  FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588
             SAS D TV +WD    + ++ LKGH   V +   +    QL  +G  D  V LWD++  
Sbjct: 79   ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137

Query: 589  AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 756
              ++    +   + +  F+ T + + +G  D+ +++WDLR      +   + GH+ +++ 
Sbjct: 138  QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNIS- 196

Query: 757  XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933
                         + D T+ +W      P    + I  +G+V  + K++   ++SPD   
Sbjct: 197  CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247

Query: 934  IAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHPD 1050
            +A+    R V VWD  + + L  L  G     +  AF PD
Sbjct: 248  LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPD 287



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 5/179 (2%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
           + +L GH+  V    F P+   LAS G+D+ ++LW+V         L GH  ++    ++
Sbjct: 98  LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156

Query: 391 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558
              + L + S D TV +WD          + L+GH+  ++  CY A     L+ +GS D 
Sbjct: 157 PTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCLCYSA---SGLLASGSWDK 213

Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 732
           T+ +W        IQ   +   V ++ F+     + S G    +KVWD    K   T++
Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 39/147 (26%), Positives = 72/147 (48%)
 Frame = +1

Query: 607  QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 786
            Q+  +V +  F+     +++G  D  +  W+ R  +L + + GH   V            
Sbjct: 19   QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78

Query: 787  XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 966
               + D TVR+WDV     + +C+++ +G+    ++++   S+SPD  ++A+G  D+ V 
Sbjct: 79   ASASCDCTVRLWDV----ARAKCLRVLKGH----QRSVETVSFSPDSRQLASGGWDKRVM 130

Query: 967  VWDYTSRRILYKLPGHAGSINEVAFHP 1047
            +WD  S ++L  L GH  SI    F P
Sbjct: 131  LWDVQSGQMLRLLVGHRDSIQSSDFSP 157


>ref|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score =  116 bits (291), Expect = 3e-26
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 1/233 (0%)
 Frame = +1

Query: 358  HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
            H G V    ++ DG ML + S D  V  W++ +G+ + RL GHT  V  C  +  G  L 
Sbjct: 20   HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78

Query: 538  CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
             + S D TV+LWD+ +   ++  +   + V  V+F+  S Q+ SGG D  + +WD++  +
Sbjct: 79   ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138

Query: 715  LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
            +   + GH DS+               + D+TV +WD+R   P      +    +     
Sbjct: 139  MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTP-----AVSHQALEGHSA 193

Query: 895  NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            N+    +S  G  +A+GS D+ +++W  T+  +L +L GH   +  +AF PD+
Sbjct: 194  NISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245



 Score =  101 bits (252), Expect = 9e-22
 Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
           L GH G V  C+F P+G   ASA  D  + LW+V         LKGH  +V  + ++ D 
Sbjct: 59  LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117

Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 573
             L S   DK V +WD ++G+ ++ L GH   + S   +   P + C  TGS D TV +W
Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVHIW 174

Query: 574 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
           D+R      + Q  +     ++      S  + SG  D  I +W    + L   ++GH  
Sbjct: 175 DLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234

Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
            V                    V+VWD        +C++  +  V +       C+++PD
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287

Query: 925 GSKIAAGSADR 957
           G  + +G+AD+
Sbjct: 288 GKILVSGAADQ 298



 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 6/280 (2%)
 Frame = +1

Query: 229  HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408
            H GEV    F P+G  L +   D  +  W           L GH+G V    ++ DG + 
Sbjct: 20   HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78

Query: 409  FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588
             SAS D TV +WD    + ++ LKGH   V +   +    QL  +G  D  V LWD++  
Sbjct: 79   ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137

Query: 589  AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 756
              ++    +   + +  F+ T + + +G  D+ + +WDLR      +   + GH+ +++ 
Sbjct: 138  QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANIS- 196

Query: 757  XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933
                         + D T+ +W      P    + I  +G+V  + K++   ++SPD   
Sbjct: 197  CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247

Query: 934  IAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHPD 1050
            +A+    R V VWD  + + L  L  G     +  AF PD
Sbjct: 248  LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPD 287



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
 Frame = +1

Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
           + +L GH+  V    F P+   LAS G+D+ ++LW+V         L GH  ++    ++
Sbjct: 98  LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156

Query: 391 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558
              + L + S D TV +WD          + L+GH++ ++  CY A     L+ +GS D 
Sbjct: 157 PTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA---SGLLASGSWDK 213

Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 732
           T+ +W        IQ   +   V ++ F+     + S G    +KVWD    K   T++
Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 39/147 (26%), Positives = 72/147 (48%)
 Frame = +1

Query: 607  QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 786
            Q+  +V +  F+     +++G  D  +  W+ R  +L + + GH   V            
Sbjct: 19   QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78

Query: 787  XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 966
               + D TVR+WDV     + +C+++ +G+    ++++   S+SPD  ++A+G  D+ V 
Sbjct: 79   ASASCDCTVRLWDV----ARAKCLRVLKGH----QRSVETVSFSPDSRQLASGGWDKRVM 130

Query: 967  VWDYTSRRILYKLPGHAGSINEVAFHP 1047
            +WD  S ++L  L GH  SI    F P
Sbjct: 131  LWDVQSGQMLRLLVGHRDSIQSSDFSP 157


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,425,847
Number of Sequences: 39411
Number of extensions: 970484
Number of successful extensions: 5317
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3705
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3387655882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-007057
         (1054 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus m...   553   e-159
Alignment   gi|NP_081389.1| WD repeat domain 5B [Mus musculus]                   162   7e-40
Alignment   gi|NP_543124.1| WD repeat domain 5 [Mus musculus]                    150   3e-36
Alignment   gi|NP_081630.1| WD repeat domain 51A [Mus musculus]                  120   2e-27
Alignment   gi|NP_084122.2| APG16L beta isoform [Mus musculus]                   118   9e-27
Alignment   gi|NP_082016.1| WD repeat domain 51B [Mus musculus]                  116   3e-26
Alignment   gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]         115   6e-26
Alignment   gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ...   108   9e-24
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate...   103   2e-22
Alignment   gi|XP_910822.1| PREDICTED: similar to APG16L beta isoform [Mus ...   102   7e-22

>ref|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus musculus]
          Length = 370

 Score =  553 bits (1424), Expect(2) = e-159
 Identities = 269/313 (85%), Positives = 271/313 (86%)
 Frame = +1

Query: 34  MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
           MIEQQKRKGPELPLVPVKR RHE                            RCSSLQAPI
Sbjct: 1   MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPI 60

Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
           MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180

Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
           DIRK+AA+QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKRAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                        NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 DLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300

Query: 934 IAAGSADRFVYVW 972
           IAAGSADRFVYVW
Sbjct: 301 IAAGSADRFVYVW 313



 Score = 29.3 bits (64), Expect(2) = e-159
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 980  QAGGFCINYPAMLAPSMKWLFTLTN 1054
            QA G C +    LAPSMKWL T T+
Sbjct: 316  QAEGSCTSCLVTLAPSMKWLSTPTS 340


>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
          Length = 328

 Score =  162 bits (409), Expect = 7e-40
 Identities = 95/284 (33%), Positives = 149/284 (52%), Gaps = 4/284 (1%)
 Frame = +1

Query: 214  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYN 390
            + L+GH   +   KF PNG  LAS+  D LI++W  Y G+C    TL GHS  + ++ ++
Sbjct: 33   LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKK--TLYGHSLEISDVAWS 90

Query: 391  TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL 570
            +D S L SAS DKT+ VWD  +G+ +K LKGH+ FV  C        L+ +GS D +VK+
Sbjct: 91   SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKI 149

Query: 571  WDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD- 744
            W+++    ++T   ++  + AV FN     I+SG  D   ++WD    +   T+    + 
Sbjct: 150  WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             V+               +DNT+++WD      + RC+K + G  H  EK  L  S+S  
Sbjct: 210  PVSFVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCLFASFSVT 263

Query: 925  GSK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            G K + +GS D  VY+W+  ++ I+ +L GH   +   A HP K
Sbjct: 264  GRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK 307



 Score =  101 bits (252), Expect = 1e-21
 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W V  G C    TL  HS  +  +++N +
Sbjct: 119 LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC--LKTLSAHSDPISAVNFNCN 176

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S S D    +WD+ +G+ ++ L    +   S        + + T + D T+KLWD
Sbjct: 177 GSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             +   ++T+   +N    L  +F+ T  + ++SG  DN + +W+L+  ++   ++GH D
Sbjct: 237 YSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTD 296

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T++VW
Sbjct: 297 VVISAACHPTKNIIASAALENDKTIKVW 324


>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
          Length = 334

 Score =  150 bits (378), Expect = 3e-36
 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%)
 Frame = +1

Query: 220  LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
            L+GH   V   KF PNG  LAS+  D+LI +W  Y D     T+ GH   + ++ +++D 
Sbjct: 41   LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99

Query: 400  SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
            ++L SAS DKT+ +WD  +G+ +K LKGH+++V  C      PQ  L+ +GS D +V++W
Sbjct: 100  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156

Query: 574  DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
            D++    ++T   ++  V AV FN     I+S   D   ++WD    +   T+    +  
Sbjct: 157  DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216

Query: 748  VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
            V+               +DNT+++WD      K +C+K + G  H  EK  +  ++S  G
Sbjct: 217  VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270

Query: 928  SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             K I +GS D  VY+W+  ++ I+ KL GH   +   A HP
Sbjct: 271  GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311



 Score =  106 bits (265), Expect = 4e-23
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L GH   V+CC F+P  + + S  FD  + +W+V  G C    TL  HS  V  +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           GS++ S+S D    +WD+ +G+ +K L    +   S        + +   + D T+KLWD
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
             K   ++T+   +N    +   F+ T  + I+SG  DN + +W+L+  ++   ++GH D
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822
            V               A++N  T+++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 37/147 (25%), Positives = 67/147 (45%)
 Frame = +1

Query: 610  NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
            +T  V +V F+   + + S   D  IK+W     K   T+ GH   ++            
Sbjct: 44   HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 790  XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
              + D T+++WDV       +C+K  +G+       +  C+++P  + I +GS D  V +
Sbjct: 104  SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155

Query: 970  WDYTSRRILYKLPGHAGSINEVAFHPD 1050
            WD  + + L  LP H+  ++ V F+ D
Sbjct: 156  WDVKTGKCLKTLPAHSDPVSAVHFNRD 182


>ref|NP_081630.1| WD repeat domain 51A [Mus musculus]
          Length = 405

 Score =  120 bits (302), Expect = 2e-27
 Identities = 83/273 (30%), Positives = 121/273 (44%), Gaps = 1/273 (0%)
 Frame = +1

Query: 226  GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
            GH   V C  F  N   LAS   D  +++W++      Y    GH  AV  ++++  G +
Sbjct: 17   GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYR-FTGHKDAVTCVNFSPSGHL 75

Query: 406  LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
            L S S DKTV +W           + HT+ V S +    G  LV T SDD TVK+W   R
Sbjct: 76   LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134

Query: 583  KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
            ++      Q+   V    F+     I+S   D  +K+WD    +  ++   H   VT   
Sbjct: 135  QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194

Query: 763  XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                        MDNTV+VWD R      R ++ +Q  +H+   N L  S+ P G+ +  
Sbjct: 195  FHPSGTCIAAAGMDNTVKVWDAR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLIT 246

Query: 943  GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041
             S+D  + + D    R+LY L GH G    VAF
Sbjct: 247  ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279



 Score =  109 bits (272), Expect = 6e-24
 Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 3/253 (1%)
 Frame = +1

Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
           +GH+  V C  F P+G  LAS   D+ + +W  NV G+       + H+  V  +H+ +D
Sbjct: 58  TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
           G  L +AS DKTV VW +     +  L  H ++V  C       +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173

Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
              +  I ++ ++   V  V F+ +   I + G+DN +KVWD R ++L    + H+ +V 
Sbjct: 174 KTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN 233

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                         + D+T+++ D+     + R +      +H  +      ++S  G  
Sbjct: 234 ALSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285

Query: 934 IAAGSADRFVYVW 972
            A+G +D  V VW
Sbjct: 286 FASGGSDEQVMVW 298



 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 4/236 (1%)
 Frame = +1

Query: 352  KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
            KGH  AV  + ++ +   L S S D T+ +W  ++  R  R  GH   V +C        
Sbjct: 16   KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAV-TCVNFSPSGH 74

Query: 532  LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
            L+ +GS D TV++W    K     F+ +T  V +V F      +++   D  +KVW   +
Sbjct: 75   LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134

Query: 709  NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
             +  +++  H + V               + D TV++WD           K  +  +H++
Sbjct: 135  QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECIHSY 183

Query: 889  EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047
             ++   +    + P G+ IAA   D  V VWD  + R+L     H+ ++N ++FHP
Sbjct: 184  CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHP 239



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
           L+ H   V C KF P+G  + SA  D+ + LW+      ++  C+       H G V  +
Sbjct: 141 LTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCE-------HGGFVTYV 193

Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
            ++  G+ + +A  D TV VWD+ T   ++  + H++ VN+      G  L+ T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDST 252

Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
           +K+ D+ +   + T   +      V F+ T +   SGG D  + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 2/195 (1%)
 Frame = +1

Query: 469  KRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFND 645
            +  KGH   V +C       + + +GS D T+ +W ++ ++    F      V  V F+ 
Sbjct: 13   RHFKGHRDAV-TCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSP 71

Query: 646  TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWD 825
            +   + SG  D  +++W       +   R H  +V               + D TV+VW 
Sbjct: 72   SGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWS 131

Query: 826  VRPFAPKERCVKIFQGNVHNFEKNLLRCS-WSPDGSKIAAGSADRFVYVWDYTSRRILYK 1002
                  ++R +     ++     N +RC+ +SPDG  I + S D+ V +WD TSR  ++ 
Sbjct: 132  TH----RQRFLFSLTQHI-----NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHS 182

Query: 1003 LPGHAGSINEVAFHP 1047
               H G +  V FHP
Sbjct: 183  YCEHGGFVTYVDFHP 197


>ref|NP_084122.2| APG16L beta isoform [Mus musculus]
          Length = 607

 Score =  118 bits (296), Expect = 9e-27
 Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 5/282 (1%)
 Frame = +1

Query: 217  LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
            +   H+GEV   +F P    LA+ G DR + LW  +GD C+   +L G +  +  + +++
Sbjct: 317  VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 376

Query: 394  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
             G+ L +AS D    +W  +       L GH+  V S        ++V +GS D T+KLW
Sbjct: 377  AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435

Query: 574  DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
            D+R K  I+T          + ND   T   ++SG  D  I+ WD+R   +   M     
Sbjct: 436  DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 489

Query: 745  SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
             +T              + D+ ++V D+R  A K+     F         +  R  +SPD
Sbjct: 490  KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 545

Query: 925  GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047
            GS +AAGSA+  +YVW   + ++   L   H+ SIN VA+ P
Sbjct: 546  GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 587


>ref|NP_082016.1| WD repeat domain 51B [Mus musculus]
          Length = 476

 Score =  116 bits (291), Expect = 3e-26
 Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 3/289 (1%)
 Frame = +1

Query: 193  SSLQAPIMLLS--GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 366
            S L+ PI+  S  GH+  +    F PN   +A+A +D  ++LW++      Y  + GH  
Sbjct: 3    SGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYV-GHKD 61

Query: 367  AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 546
             V  L ++  G++L SAS D+TV +W  +   +    K HT+ V S   +  G QL+ T 
Sbjct: 62   VVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADG-QLLVTA 120

Query: 547  SDDGTVKLWDI-RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTY 723
            S+D ++K+W + R++     +++T+ V    F+     I+S   D  IK+WD    +   
Sbjct: 121  SEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN 180

Query: 724  TMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLL 903
                                      D+ V++WD+R      + ++ +Q  VH+   N L
Sbjct: 181  NFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR----MNKLLQHYQ--VHSCGVNCL 234

Query: 904  RCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
              S+ P G+ +   S+D  V + D    R++Y L GH G +  V+F  D
Sbjct: 235  --SFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKD 281



 Score =  109 bits (273), Expect = 4e-24
 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
 Frame = +1

Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
           GH+  V   +F P G+ LASA  DR + LW V       +  K H+  V  + ++ DG +
Sbjct: 58  GHKDVVTSLQFSPQGNLLASASRDRTVRLW-VLDRKGKSSEFKAHTAPVRSVDFSADGQL 116

Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
           L +AS DK++ VW       +  L  HT +V  C       +L+ + S+D T+K+WD   
Sbjct: 117 LVTASEDKSIKVWSMFRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKTIKIWDTTN 175

Query: 586 KAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
           K  +  F ++      V FN     I S G D+ +K+WD+R NKL    + H+  V    
Sbjct: 176 KQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLS 235

Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
                      + D TV++ D+     + R +   QG+       +   S+S DG  + +
Sbjct: 236 FHPLGNSLVTASSDGTVKMLDLI----EGRLIYTLQGHTGP----VFTVSFSKDGELLTS 287

Query: 943 GSADRFVYVW 972
           G AD  V +W
Sbjct: 288 GGADAQVLIW 297


>ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]
          Length = 303

 Score =  115 bits (289), Expect = 6e-26
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 1/233 (0%)
 Frame = +1

Query: 358  HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
            H G V    ++ DG  L +AS D  V VW +++G  + RL GH   V SC  +  G +L+
Sbjct: 25   HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDG-RLI 83

Query: 538  CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
             + S D +++LWD+ +   +   +   + V  V+F+  S Q+ SGG D    VW+++  +
Sbjct: 84   ASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR 143

Query: 715  LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
              + + GH DS+               + D+TV +WD+R   P      +   N+     
Sbjct: 144  RVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP-----VVSYHNLEGHTG 198

Query: 895  NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053
            N+    +S  G  +A+GS D+ + VW  T+  +  +L GH   +N +AF PD+
Sbjct: 199  NISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDE 250



 Score =  104 bits (259), Expect = 2e-22
 Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
           L+GH G V  C F P+G  +AS+  D  I LW+V    C +   LKGH  +V  + ++ D
Sbjct: 64  LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLH--VLKGHQRSVETVSFSPD 121

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
              L S   DK   VW+ ++G RV  L GH   + S   +     L  TGS D TV +WD
Sbjct: 122 SKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSL-ATGSWDSTVHIWD 180

Query: 577 IRKKAAIQTFQN----TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
           +R    + ++ N    T  +  + ++  S  + SG  D  I VW    N L   ++GH  
Sbjct: 181 LRASTPVVSYHNLEGHTGNISCLCYS-ASGLLASGSWDKTICVWKPTTNNLPLQLKGHTI 239

Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
            V                   TV+VWD        +C++  +G +         C ++PD
Sbjct: 240 WVNSLAFSPDELKLASAGYSRTVKVWD----CLTGKCLETLKGMLDVAH----ACIFTPD 291

Query: 925 GSKIAAGSA 951
           G  + +G+A
Sbjct: 292 GKLLVSGAA 300



 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%)
 Frame = +1

Query: 196  SLQAPIMLLSG-------HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLK 354
            +++AP  L  G       H GEV C  F P+G TL +A  D  + +W        +  L 
Sbjct: 7    NIRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLW-RLA 65

Query: 355  GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 534
            GH G V    ++ DG ++ S+S+D ++ +WD    + +  LKGH   V +   +    QL
Sbjct: 66   GHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQL 125

Query: 535  VCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 711
               G D   + +W+++    +     +   + +  F+ TSD + +G  D+ + +WDLR +
Sbjct: 126  ASGGWDKRAI-VWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRAS 184

Query: 712  KLT---YTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH 882
                  + + GH  +++              + D T+ VW      P    + + Q   H
Sbjct: 185  TPVVSYHNLEGHTGNIS-CLCYSASGLLASGSWDKTICVW-----KPTTNNLPL-QLKGH 237

Query: 883  NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
                N L  ++SPD  K+A+    R V VWD  + + L  L G     +   F PD
Sbjct: 238  TIWVNSL--AFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPD 291


>ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus]
          Length = 658

 Score =  108 bits (270), Expect = 9e-24
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
 Frame = +1

Query: 448  SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
            ++T  +++ +  H S V+S    +   +L+ TG DD  V LW I K   I +   +T  V
Sbjct: 7    TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66

Query: 625  LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
             +V  N   + I++G     I+VWDL   K+  T+ GH  ++               + D
Sbjct: 67   ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126

Query: 805  NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981
              +++WD+R    ++ CV  ++G+        +RC  +SPDG  +A+ + D  V +WD T
Sbjct: 127  TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177

Query: 982  SRRILYKLPGHAGSINEVAFHPDK 1053
            + +++ + PGH G +N V FHP++
Sbjct: 178  AGKMMSEFPGHTGPVNVVEFHPNE 201



 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
 Frame = +1

Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
           +G  LA+ G D  + LW++    +   +L GH+  V  +  NT   ++ + S   ++ VW
Sbjct: 32  SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90

Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
           D E  + ++ L GH + + S      G + V +GS D  +KLWDIR+K  +  ++   Q 
Sbjct: 91  DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149

Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
           V  + F+     + S   D+ +K+WDL   K+     GH   V               + 
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975
           D T+R WD+  F     C++   G V +         ++PDG  + +G  D   VY W+
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260



 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
 Frame = +1

Query: 397  GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
            G +L +   D  V +W       +  L GHTS V S        +L+  GS  G++++WD
Sbjct: 33   GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91

Query: 577  IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            +     ++T   +   + ++ F+   + + SG  D +IK+WD+R+    +  RGH+ +V 
Sbjct: 92   LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151

Query: 754  XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
                          A D+TV++WD+       + +  F G  H    N++   + P+   
Sbjct: 152  CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203

Query: 934  IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050
            +A+GS+DR +  WD    +++  + G  G +  V F+PD
Sbjct: 204  LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = +1

Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
           L GH+  +    FHP G  +AS   D  I LW++   G    Y   +GHS AV  L ++ 
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           DG  L SA+ D TV +WD   G+ +    GHT  VN          L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216

Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
           D+ K   +   +     V +V FN     + SG  D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253


>ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor
           (PCAF)-associated factor [Mus musculus]
          Length = 589

 Score =  103 bits (258), Expect = 2e-22
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
 Frame = +1

Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 396
           +L GH G VY  +F  + S L S   D  I  W++ G   N    +GH+  V ++  +  
Sbjct: 337 ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL-GSFTNTVLYQGHAYPVWDVDISPF 395

Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
                S S D+T  +W  +    ++   GH + V+ C         + TGS D TV+LW 
Sbjct: 396 SLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD-CVKFHPNSNYLATGSTDKTVRLWS 454

Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
            ++  +++ F  +   VL+++F+     + S G D  +K+WDL    L   +RGH DS+T
Sbjct: 455 AQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT 514

Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVR 831
                         +MDN+VRVWD+R
Sbjct: 515 SLAFSPDSGLIASASMDNSVRVWDIR 540



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
 Frame = +1

Query: 208 PIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHY 387
           P+ + +GH  +V C KFHPN + LA+   D+ + LW+     ++     GH G V+ L +
Sbjct: 418 PLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQ-QGNSVRLFTGHRGPVLSLSF 476

Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDGTV 564
           + +G  L SA  D+ + +WD  +G   K L+GHT  + S  +    G  L+ + S D +V
Sbjct: 477 SPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSG--LIASASMDNSV 534

Query: 565 KLWDIR 582
           ++WDIR
Sbjct: 535 RVWDIR 540



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 6/266 (2%)
 Frame = +1

Query: 271  STLASAGFDR-LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWD 447
            S L +AGFD   I LW++         LK       E H+     +  +  T +     +
Sbjct: 280  SKLLAAGFDNSCIKLWSLRSK-----KLKS------EPHHVDTSRIRLACDTLEEEENEE 328

Query: 448  SETGERVKRLKGHTSFVNSC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQ 621
              TG  +K L+GH   V S  + A     L C  S+D +++ WD+        +Q + Y 
Sbjct: 329  DNTGTEMKILRGHCGPVYSTRFLADSSGLLSC--SEDMSIRYWDLGSFTNTVLYQGHAYP 386

Query: 622  VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR---GHADSVTXXXXXXXXXXXXX 792
            V  V  +  S    SG  D   ++W   +   TY +R   GH   V              
Sbjct: 387  VWDVDISPFSLYFASGSHDRTARLWSFDR---TYPLRIYAGHLADVDCVKFHPNSNYLAT 443

Query: 793  NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVW 972
             + D TVR+W     A +   V++F G+       +L  S+SP+G  +A+   D+ + +W
Sbjct: 444  GSTDKTVRLWS----AQQGNSVRLFTGH----RGPVLSLSFSPNGKYLASAGEDQRLKLW 495

Query: 973  DYTSRRILYKLPGHAGSINEVAFHPD 1050
            D  S  +  +L GH  SI  +AF PD
Sbjct: 496  DLASGTLFKELRGHTDSITSLAFSPD 521



 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
 Frame = +1

Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
           +L  GH   V+     P     AS   DR   LW+ +          GH   V  + ++ 
Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWS-FDRTYPLRIYAGHLADVDCVKFHP 436

Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
           + + L + STDKTV +W ++ G  V+   GH   V S   +  G  L   G +D  +KLW
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAG-EDQRLKLW 495

Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLR 705
           D+      +  + +T  + ++ F+  S  I S  +DN ++VWD+R
Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540


>ref|XP_910822.1| PREDICTED: similar to APG16L beta isoform [Mus musculus]
          Length = 647

 Score =  102 bits (254), Expect = 7e-22
 Identities = 84/289 (29%), Positives = 128/289 (44%), Gaps = 5/289 (1%)
 Frame = +1

Query: 190  CSSLQAPIM---LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKG 357
            C S Q P     +L  H  EV    F PN S LA+ G DRLI LWNV G   +   TL+G
Sbjct: 347  CVSAQIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEG 406

Query: 358  HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
              G++  + ++  GS + +A+ ++   +W     +  + L GH   V +        Q V
Sbjct: 407  AGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKETLSGHKDKVTAAKFKLTRHQAV 466

Query: 538  CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 717
             TGS D TVK WD+ +    +T         V   D    IISG  D  I+ WD R    
Sbjct: 467  -TGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPHC 523

Query: 718  TYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 897
               +      VT              + DNT++V D+R         ++F+ +      +
Sbjct: 524  IQVIPVQG-RVTSLHLSYDQLHLLSCSRDNTLKVIDLR----ISNIRQVFRADGFKCSSD 578

Query: 898  LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPG-HAGSINEVAF 1041
              +  +SPD S   AGS++  +Y+WD  + ++   L G H  ++N VA+
Sbjct: 579  WTKAVFSPDRSYALAGSSNGDLYIWDVNTGKLETSLQGPHCTAVNAVAW 627


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,486,430
Number of Sequences: 45328
Number of extensions: 1148265
Number of successful extensions: 6412
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4770
length of database: 21,768,885
effective HSP length: 104
effective length of database: 17,054,773
effective search space used: 4195474158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)