BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-007057 (1054 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 100 4e-23 Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 92 2e-20 Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 59 2e-10 >ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus scrofa] Length = 410 Score = 100 bits (250), Expect = 4e-23 Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 22/259 (8%) Frame = +1 Query: 334 DNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP 513 + YA L GH V + ++ S++ SAS D T+ VWD ETG+ + LKGHT V Sbjct: 100 EKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158 Query: 514 ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIK 690 G +L+ + S D T+KLWD + I+T + + V +V D I+S D IK Sbjct: 159 DHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217 Query: 691 VWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQ 870 +W+++ T GH + V + D TVRVW V A KE ++ + Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274 Query: 871 GNVHNFEKNLLRC-SWSPDGSK--------------------IAAGSADRFVYVWDYTSR 987 ++++ C SW+P+ S + +GS D+ + +WD ++ Sbjct: 275 ------HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 Query: 988 RILYKLPGHAGSINEVAFH 1044 L L GH + V FH Sbjct: 329 MCLMTLVGHDNWVRGVLFH 347 Score = 99.0 bits (245), Expect = 2e-22 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 21/296 (7%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 LSGH V FHP S + SA D I +W+ Y D TLKGH+ +V ++ ++ G Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579 +L S S D T+ +WD + E ++ + GH V+S G +V + + D T+K+W++ Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SAARDKTIKMWEV 221 Query: 580 RKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTX 756 + ++TF + V V N I S D ++VW + + +R H V Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281 Query: 757 XXXXXXXXXXXXN--------------------AMDNTVRVWDVRPFAPKERCVKIFQGN 876 + + D T+++WDV C+ G+ Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGH 337 Query: 877 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044 N+ + +L + G I + + D+ + VWDY ++R + L H + + FH Sbjct: 338 -DNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 Score = 97.1 bits (240), Expect = 6e-22 Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 22/274 (8%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYG-DCDNYATLKGHSGAVMELHYNTD 396 L GH V F +G LAS D I LW+ G +C T+ GH V + + Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVAIMPN 203 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G + SA+ DKT+ +W+ +TG VK GH +V P + G L+ + S+D TV++W Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWV 262 Query: 577 IRKK---AAIQTFQNTYQVLA------------VTFNDTSDQ------IISGGIDNDIKV 693 + K A ++ ++ + ++ T ++T ++SG D IK+ Sbjct: 263 VATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 Query: 694 WDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQG 873 WD+ T+ GH + V A D T+RVWD + +RC+K Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNA 378 Query: 874 NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWD 975 + H F +L + + GS D+ V VW+ Sbjct: 379 HEH-FVTSL---DFHKTAPYVVTGSVDQTVKVWE 408 Score = 88.6 bits (218), Expect = 2e-19 Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 22/229 (9%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHY 387 I + GH+ V PNG + SA D+ I +W V G C T GH V + Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYC--VKTFTGHREWVRMVRP 242 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV-------NSCYPA---------- 516 N DG+++ S S D+TV VW T E L+ H V S Y + Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETK 302 Query: 517 ---RRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDND 684 + GP L+ +GS D T+K+WD+ + T + V V F+ I+S D Sbjct: 303 KSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361 Query: 685 IKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVR 831 ++VWD + + T+ H VT ++D TV+VW+ R Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 Score = 63.5 bits (153), Expect = 8e-12 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 1/174 (0%) Frame = +1 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 ++ + S+D T+K+WD +T + +T V ++F+ + + S D IK+WD + Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888 + TM GH +V+ A D T+++W+V+ CVK F G H Sbjct: 182 FECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQ----TGYCVKTFTG--HRE 235 Query: 889 EKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 ++R + DG+ IA+ S D+ V VW ++ +L H + +++ P+ Sbjct: 236 WVRMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPE 287 >ref|NP_999497.1| G-beta like protein [Sus scrofa] Length = 317 Score = 92.4 bits (228), Expect = 2e-20 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Frame = +1 Query: 346 TLKGHSGAVMELHYNTD-GSMLFSASTDKTVAVW-----DSETGERVKRLKGHTSFVNSC 507 TLKGH+G V ++ M+ SAS DKT+ +W ++ G + L+GH+ FV+ Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69 Query: 508 YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDND 684 + G Q +GS DGT++LWD+ + F +T VL+V F+ + QI+SG D Sbjct: 70 VISSDG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128 Query: 685 IKVWD-LRQNKLTYTMRGHAD--SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERC 855 IK+W+ L K T H++ S D V+VW++ K Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188 Query: 856 VKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEV 1035 + H N + S PDGS A+G D +WD + LY L G IN + Sbjct: 189 IG------HTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL 239 Query: 1036 AFHPDK 1053 F P++ Sbjct: 240 CFSPNR 245 Score = 89.7 bits (221), Expect = 1e-19 Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 50/304 (16%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPN-GSTLASAGFDRLILLWNVYGDCDNYA----TLKGHSGAVMELH 384 L GH G V P + SA D+ I++W + D NY L+GHS V ++ Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70 Query: 385 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV 564 ++DG S S D T+ +WD TG +R GHT V S + Q+V +GS D T+ Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTI 129 Query: 565 KLWDIRK--KAAIQTFQNTYQVLAVTFNDTSDQ--IISGGIDNDIKVWDLRQNKLTYTMR 732 KLW+ K +Q ++ V V F+ S I+S G D +KVW+L KL Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189 Query: 733 GHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRP-----------------FAPKER--- 852 GH + D +WD+ F+P Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249 Query: 853 -----CVKIF--QGN--VHNFEKNLLRCS------------WSPDGSKIAAGSADRFVYV 969 +KI+ +G V ++ ++ S WS DG + AG D V V Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309 Query: 970 WDYT 981 W T Sbjct: 310 WQVT 313 >ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa] Length = 493 Score = 58.9 bits (141), Expect = 2e-10 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 5/211 (2%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387 + +L GH V + N L+S DR+IL ++ + L+GH V L + Sbjct: 264 LSMLEGHTARVGALAW--NADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKW 321 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 561 +TD +L S D + VW+ + V++ H + V + P + G G+ D Sbjct: 322 STDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRC 381 Query: 562 VKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIIS--GGIDNDIKVWDLRQNKLTYTMRG 735 ++ W+ +Q QV + ++ +++++S G N I VW + G Sbjct: 382 IRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTG 441 Query: 736 HADSVTXXXXXXXXXXXXXNAMDNTVRVWDV 828 H+ V A D T+R W+V Sbjct: 442 HSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 472 Score = 53.5 bits (127), Expect = 8e-09 Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 12/268 (4%) Frame = +1 Query: 283 SAGFDRLILLWNVYGDCDNYAT----LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDS 450 S G + LW+ C + T L +V + ++ G+++ + V +WD+ Sbjct: 202 SVGLGTCVYLWSA---CTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258 Query: 451 ETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK---KAAIQTFQNTYQ 621 G+++ L+GHT+ V + A QL +GS D + DIR ++ + + + Sbjct: 259 AAGKKLSMLEGHTARVGAL--AWNADQL-SSGSRDRMILQRDIRTPPLQSERRLQGHRQE 315 Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX---XXXXXXXXXX 792 V + ++ + SGG DN + VW+ H +V Sbjct: 316 VCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGG 375 Query: 793 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA--GSADRFVY 966 D +R W+ P + C+ + + +WS +++ + G + + Sbjct: 376 GTADRCIRFWNTLTGQPLQ-CI--------DTGSQVCNLAWSKHANELVSTHGYSQNQIL 426 Query: 967 VWDYTSRRILYKLPGHAGSINEVAFHPD 1050 VW Y S + KL GH+ + +A PD Sbjct: 427 VWKYPSLTQVAKLTGHSYRVLYLAMSPD 454 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 984,537 Number of Sequences: 1040 Number of extensions: 23532 Number of successful extensions: 111 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 66 length of database: 434,620 effective HSP length: 78 effective length of database: 353,500 effective search space used: 96152000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-007057 (1054 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isof... 608 e-174 Alignment gi|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isof... 199 4e-51 Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 128 9e-30 Alignment gi|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like... 120 2e-27 Alignment gi|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like... 120 2e-27 Alignment gi|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like... 120 2e-27 Alignment gi|NP_001033649.1| WD repeat domain 51A [Bos taurus] 118 9e-27 Alignment gi|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos ... 110 2e-24 Alignment gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos... 108 7e-24 Alignment gi|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase ... 108 9e-24 >ref|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isoform 1 [Bos taurus] Length = 358 Score = 608 bits (1568), Expect = e-174 Identities = 297/340 (87%), Positives = 298/340 (87%) Frame = +1 Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213 MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180 Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+ Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340 >ref|XP_887150.1| PREDICTED: similar to WD-repeat protein 57 isoform 2 [Bos taurus] Length = 127 Score = 199 bits (505), Expect = 4e-51 Identities = 94/109 (86%), Positives = 95/109 (87%) Frame = +1 Query: 727 MRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 906 MRGHADSVT NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR Sbjct: 1 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 60 Query: 907 CSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 CSWSPDGSKIAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+ Sbjct: 61 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 109 >ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] Length = 441 Score = 128 bits (321), Expect = 9e-30 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393 L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N Sbjct: 156 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 213 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 +++ + S D T +WD ++GE V L GH++ + S G +++ TGS D TV +W Sbjct: 214 QSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII-TGSFDHTVTVW 272 Query: 574 DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750 + + T + ++ + FN I++G +D K+WD K T+ GH D + Sbjct: 273 EADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEI 332 Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930 + D T R++ A CV +G+ E + + S++P G+ Sbjct: 333 LDSCFDYTGKLIATASADGTARIFS----AATRECVTKLEGH----EGEISKISFNPQGN 384 Query: 931 KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044 ++ GS+D+ +WD + + L L GH I AF+ Sbjct: 385 RLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 422 Score = 126 bits (317), Expect = 3e-29 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441 +GS + +DR LW+ + TL+GH V + +N G + + S DKT + Sbjct: 129 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 187 Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618 W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T ++ Sbjct: 188 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSA 246 Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798 ++++++FN + ++II+G D+ + VW+ + YT+ GH ++ + Sbjct: 247 EIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGS 306 Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978 MD T ++WD A +CV G+ + +L + G IA SAD ++ Sbjct: 307 MDKTCKLWD----AVNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 358 Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047 +R + KL GH G I++++F+P Sbjct: 359 ATRECVTKLEGHEGEISKISFNP 381 Score = 113 bits (283), Expect = 2e-25 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH E+ C F+P + +A+ D LW++ + TL GHS ++ L +NT G+ Sbjct: 201 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLTGHSAEIISLSFNTSGNR 259 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD-IR 582 + + S D TV VW+++TG +V L GH + ++S L+ TGS D T KLWD + Sbjct: 260 IITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAV-FNWDCSLILTGSMDKTCKLWDAVN 318 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 K + ++L F+ T I + D +++ + + GH ++ Sbjct: 319 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS 378 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 + D T R+WD A +C+++ +G+ + C+++ G I Sbjct: 379 FNPQGNRLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 430 Query: 943 GSADRFVYVW 972 GS D +W Sbjct: 431 GSKDNTCRIW 440 Score = 99.4 bits (246), Expect = 4e-21 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 2/206 (0%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390 + L+GH E+ F+ +G+ + + FD + +W Y TL GH + +N Sbjct: 238 VFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY-TLIGHCAEISSAVFN 296 Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567 D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT + Sbjct: 297 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 354 Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 ++ + + + + ++ ++FN +++++G D ++WD + + + GH D Sbjct: 355 IFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTD 414 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822 + + DNT R+W Sbjct: 415 EIFSCAFNYKGDIIITGSKDNTCRIW 440 Score = 84.0 bits (206), Expect = 2e-16 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Frame = +1 Query: 541 TGSDDGTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNK 714 TGS D T KLWD + T + V+ A+ FN+ D+I +G D K+W + K Sbjct: 135 TGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGK 194 Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894 +T RGH + +MD T ++WD++ ++F H+ E Sbjct: 195 CYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLTGHSAE- 247 Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 ++ S++ G++I GS D V VW+ + R +Y L GH I+ F+ D Sbjct: 248 -IISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWD 298 >ref|XP_869200.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 3 [Bos taurus] Length = 607 Score = 120 bits (300), Expect = 2e-27 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 545 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P Sbjct: 546 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 587 >ref|XP_877191.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 6 [Bos taurus] Length = 588 Score = 120 bits (300), Expect = 2e-27 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 298 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 526 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P Sbjct: 527 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 568 >ref|XP_877095.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 5 [Bos taurus] Length = 623 Score = 120 bits (300), Expect = 2e-27 Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 333 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 393 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 506 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 561 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 GS +AAG+A+ +Y+W+ S ++ L H+ SIN VA+ P Sbjct: 562 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 603 >ref|NP_001033649.1| WD repeat domain 51A [Bos taurus] Length = 407 Score = 118 bits (295), Expect = 9e-27 Identities = 83/273 (30%), Positives = 120/273 (43%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH V F N LAS D +++W++ Y GH AV ++++ G + Sbjct: 17 GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-FAGHKDAVTCVNFSPSGHL 75 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L S S DKTV +W + HT+ V S + G V T SDD TVK+W R Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWSTHR 134 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 +K Q+ V F+ I+S D +K+WD + ++ H VT Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ + Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLVT 246 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R+LY L GH G VAF Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279 Score = 108 bits (271), Expect = 5e-24 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 3/253 (1%) Frame = +1 Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396 +GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD Sbjct: 115 GQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173 Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + + ++ ++ V V F+ + I + G+DN +KVWD+R ++L + H+ +V Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 + D+T+++ D+ + R + +H + ++S G Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285 Query: 934 IAAGSADRFVYVW 972 A+G +D V VW Sbjct: 286 FASGGSDEQVMVW 298 Score = 92.4 bits (228), Expect = 5e-19 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 4/236 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH AV + ++ + L S S D + VW + R R GH V +C Sbjct: 16 KGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAV-TCVNFSPSGH 74 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ +GS D TV++W K F+ +T V +V F ++ D +KVW + Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHR 134 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888 K +++ H + V + D TV++WD K + VH++ Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183 Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 ++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239 Score = 75.9 bits (185), Expect = 5e-14 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381 LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V + Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ G+ + +A D TV VWD T ++ + H++ VN+ G LV T S D T Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLV-TASSDST 252 Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696 +K+ D+ + + T + V F+ T + SGG D + VW Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298 >ref|XP_588289.2| PREDICTED: similar to APG16L beta isoform [Bos taurus] Length = 616 Score = 110 bits (274), Expect = 2e-24 Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 2/277 (0%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393 +L H EV +F PN S LA+ G DRLILLWNV G TL+G G++ + ++ Sbjct: 328 VLDAHLSEVSAVRFGPNSSLLATGGADRLILLWNVVGGHLKANQTLEGAGGSITSVDFDP 387 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +A+ +K +W + + L GHT V + Q V TGS D TVK W Sbjct: 388 SGSQLLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAV-TGSRDRTVKEW 446 Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 D+ + +T V D IISG D I+ WD R + T + VT Sbjct: 447 DLCRAYCSRTINVLSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPRCTQVIPVQG-RVT 503 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 + D+T++V D+R ++F+ + + + +SPD S Sbjct: 504 SLSLSHDQLHLLSCSRDDTLKVIDLR----VSNIRQVFRADGFKCGSDWTKAVFSPDRSY 559 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPG-HAGSINEVAF 1041 AGS D +Y+W+ + ++ L G H+ ++N VA+ Sbjct: 560 ALAGSWDGALYIWNVDTGKLESSLRGPHSAAVNAVAW 596 >ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus] Length = 495 Score = 108 bits (270), Expect = 7e-24 Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH+ + F PNG LA+ +D ++LW++ + + GH + + ++ G++ Sbjct: 33 GHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYV-GHKDVITSVQFSPLGNL 91 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L SAS D+T+ +W + + K HT+ V S + G Q + + S+D ++K+W++ R Sbjct: 92 LASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLASASEDKSIKVWNMYR 150 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 ++ +++T+ V F+ I+S D IK+WD + Sbjct: 151 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVA 210 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 D+TV++WD+R + ++ +Q VH+ N + S+ P G+ + Sbjct: 211 FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYLIT 262 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R++Y L GH G + V+F Sbjct: 263 ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSF 295 Score = 105 bits (262), Expect = 6e-23 Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 1/268 (0%) Frame = +1 Query: 202 QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 381 QA GH+ + +F P G+ LASA DR I LW + + K H+ V + Sbjct: 67 QARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLW-IPDKRGKSSEFKAHTAPVRSV 125 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ DG L SAS DK++ VW+ + L HT +V C +L+ + S+D T Sbjct: 126 DFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 184 Query: 562 VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738 +K+WD K + F + V FN I S G D+ +K+WD+R NKL + H Sbjct: 185 IKIWDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 244 Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918 + V + D T+++ D+ + R + QG+ + S+S Sbjct: 245 SGGVNCVSFHPSGNYLITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 296 Query: 919 PDGSKIAAGSADRFVYVWDYTSRRILYK 1002 G +G AD V +W + YK Sbjct: 297 KGGELFTSGGADAQVLLWRTNFDELNYK 324 Score = 95.9 bits (237), Expect = 5e-20 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 3/235 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH A+ + ++ +G L + S D + +W R R GH + S + G Sbjct: 32 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLG-N 90 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ + S D T++LW K+ F+ +T V +V F+ + S D IKVW++ + Sbjct: 91 LLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYR 150 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 882 + Y++ H V + D T+++WD ++CV F V Sbjct: 151 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDFVGFA 206 Query: 883 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 NF +++P+G+ IA+ +D V +WD ++L H+G +N V+FHP Sbjct: 207 NF------VAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHP 255 >ref|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) [Bos taurus] Length = 577 Score = 108 bits (269), Expect = 9e-24 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 1/206 (0%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 396 +L GH G VY +F + S L S D I W++ G N +GH+ V +L + Sbjct: 325 VLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL-GSFTNTVLYQGHAYPVWDLDISPH 383 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 S S D+T +W + ++ GH + V+ C + TGS D TV+LW Sbjct: 384 SLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVD-CVKFHPNSNYLATGSTDKTVRLWS 442 Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 ++ +++ F + VL++ F+ S + S G D +K+WDL L +RGH DS+T Sbjct: 443 TQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDSIT 502 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVR 831 +MDN+VRVWD+R Sbjct: 503 SLTFSSDSSLIASASMDNSVRVWDIR 528 Score = 82.8 bits (203), Expect = 4e-16 Identities = 41/125 (32%), Positives = 67/125 (53%) Frame = +1 Query: 208 PIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHY 387 P+ + +GH +V C KFHPN + LA+ D+ + LW+ ++ GH G V+ L + Sbjct: 406 PLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQ-QGNSVRLFTGHRGPVLSLAF 464 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567 + + L SA D+ + +WD +G K L+GHT + S L+ + S D +V+ Sbjct: 465 SPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDSITS-LTFSSDSSLIASASMDNSVR 523 Query: 568 LWDIR 582 +WDIR Sbjct: 524 VWDIR 528 Score = 74.3 bits (181), Expect = 1e-13 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 1/165 (0%) Frame = +1 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 +L GH V+ P+ AS DR LW+ + GH V + ++ Sbjct: 366 VLYQGHAYPVWDLDISPHSLYFASGSHDRTARLWS-FDRTYPLRIFAGHLADVDCVKFHP 424 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 + + L + STDKTV +W ++ G V+ GH V S + L G +D +KLW Sbjct: 425 NSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAG-EDQRLKLW 483 Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLR 705 D+ + + +T + ++TF+ S I S +DN ++VWD+R Sbjct: 484 DLASGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVWDIR 528 Score = 69.7 bits (169), Expect = 4e-12 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 3/266 (1%) Frame = +1 Query: 262 PNGSTLASAGFDR-LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVA 438 PN LA AGFD I LW++ C K H V +H D F D Sbjct: 266 PNSKLLA-AGFDNSCIKLWSL---CSEKLKSKPHQVDVSRIHLACD----FLEEEDDE-- 315 Query: 439 VWDSETGERVKRLKGHTSFVNSC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-N 612 D G +K L+GH V S + A L C S+D +++ WD+ +Q + Sbjct: 316 --DDNAGTEMKVLRGHCGPVYSTRFLADSSGLLSC--SEDMSIRYWDLGSFTNTVLYQGH 371 Query: 613 TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXX 792 Y V + + S SG D ++W + GH V Sbjct: 372 AYPVWDLDISPHSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLAT 431 Query: 793 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVW 972 + D TVR+W + + V++F G+ +L ++SP+ +A+ D+ + +W Sbjct: 432 GSTDKTVRLWSTQ----QGNSVRLFTGH----RGPVLSLAFSPNSKYLASAGEDQRLKLW 483 Query: 973 DYTSRRILYKLPGHAGSINEVAFHPD 1050 D S + +L GH SI + F D Sbjct: 484 DLASGTLYKELRGHTDSITSLTFSSD 509 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,806,363 Number of Sequences: 33508 Number of extensions: 844483 Number of successful extensions: 5878 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3939 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 3148312880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-007057 (1054 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 608 e-174 Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 140 2e-33 Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] 130 2e-30 Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 119 5e-27 Alignment gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like... 119 6e-27 Alignment gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like... 119 6e-27 Alignment gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like... 119 6e-27 Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 112 8e-25 Alignment gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi... 108 9e-24 Alignment gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi... 108 9e-24 >ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris] Length = 358 Score = 608 bits (1568), Expect = e-174 Identities = 297/340 (87%), Positives = 298/340 (87%) Frame = +1 Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213 MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQTAPGALLQAGPPRCSSLQAPI 60 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180 Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+ Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340 >ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris] Length = 334 Score = 140 bits (353), Expect = 2e-33 Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 5/281 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573 ++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156 Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDI-KVWDLRQNKLTYTMRGHADS 747 D++ ++T ++ V AV FN I+S D K + + + Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPP 216 Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927 V+ +DNT+++WD K +C+K + G H EK + ++S G Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270 Query: 928 SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 K I +GS D VY+W+ ++ I+ KL GH + A HP Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311 Score = 93.2 bits (230), Expect = 4e-19 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S+S D + +K + + S + + + D T+KLWD Sbjct: 183 GSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T+++W Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330 Score = 67.0 bits (162), Expect = 3e-11 Identities = 37/147 (25%), Positives = 67/147 (45%) Frame = +1 Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789 +T V +V F+ + + S D IK+W K T+ GH ++ Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103 Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969 + D T+++WDV +C+K +G+ + C+++P + I +GS D V + Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155 Query: 970 WDYTSRRILYKLPGHAGSINEVAFHPD 1050 WD + + L LP H+ ++ V F+ D Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182 Score = 57.0 bits (136), Expect = 3e-08 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%) Frame = +1 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN- 390 ++L V KF PNG + +A D + LW+ Y T GH + N Sbjct: 208 LILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266 Query: 391 --TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV--NSCYPARRGPQLVCTGS--D 552 T G + S S D V +W+ +T E V++L+GHT V +C+P ++ + + + Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE---NIIASAALEN 323 Query: 553 DGTVKLW 573 D T+KLW Sbjct: 324 DKTIKLW 330 >ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] Length = 415 Score = 130 bits (327), Expect = 2e-30 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 2/263 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441 +GS + +DR LW+ + TL+GH V + +N G + + S DKT + Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161 Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618 W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++ Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSA 220 Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798 ++++++FN + D+I++G D+ + VW+ + YT+ GH ++ + Sbjct: 221 EIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGS 280 Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978 MD T +WD A +CV G+ + +L + G IA SAD V+ Sbjct: 281 MDKTCMLWD----ASNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARVFSA 332 Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047 +R+ L KL GH G I++++F+P Sbjct: 333 ATRKCLTKLEGHEGEISKISFNP 355 Score = 128 bits (322), Expect = 8e-30 Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393 L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 +++ + S D T +WD ++GE V L+GH++ + S G ++V TGS D TV +W Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV-TGSFDHTVAVW 246 Query: 574 DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750 + + T + ++ + FN I++G +D +WD K T+ GH D + Sbjct: 247 EADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEI 306 Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930 + D T RV+ A +C+ +G+ E + + S++P G+ Sbjct: 307 LDSCFDYTGKLIATASADGTARVFS----AATRKCLTKLEGH----EGEISKISFNPQGN 358 Query: 931 KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044 ++ GSAD +WD + + L L GH I AF+ Sbjct: 359 RLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFN 396 Score = 115 bits (288), Expect = 7e-26 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH E+ C F+P + +A+ D LW++ + TL+GHS ++ L +NT G Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLRGHSAEIISLSFNTSGDR 233 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585 + + S D TVAVW+++TG +V L GH + ++S L+ TGS D T LWD Sbjct: 234 IVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSAL-FNWDCSLILTGSMDKTCMLWDASN 292 Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 + T + ++L F+ T I + D +V+ K + GH ++ Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS 352 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 + D T R+WD A +C+++ +G+ + C+++ G I Sbjct: 353 FNPQGNRLLTGSADETARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 404 Query: 943 GSADRFVYVW 972 GS D +W Sbjct: 405 GSKDNTCRIW 414 Score = 99.0 bits (245), Expect = 7e-21 Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 2/206 (0%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390 + L GH E+ F+ +G + + FD + +W Y TL GH + +N Sbjct: 212 VFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY-TLIGHCAEISSALFN 270 Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567 D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT + Sbjct: 271 WDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 328 Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 ++ + + + + ++ ++FN +++++G D ++WD + + + GH D Sbjct: 329 VFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTD 388 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822 + + DNT R+W Sbjct: 389 EIFSCAFNYKGDIIITGSKDNTCRIW 414 Score = 84.0 bits (206), Expect = 2e-16 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 12/227 (5%) Frame = +1 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP----------QLVCTGSDD 555 L +AS + V + +++++ HT ++ A P TGS D Sbjct: 54 LITASRSEQVKLLIQRLQDKLRQHSNHTFYLFKVLRAHILPLTNVALNKSGSCFITGSYD 113 Query: 556 GTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTM 729 T KLWD + T + V+ A+ FN+ D+I +G D K+W + K +T Sbjct: 114 RTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTF 173 Query: 730 RGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC 909 RGH + +MD T ++WD++ ++F H+ E ++ Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLRGHSAE--IISL 225 Query: 910 SWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 S++ G +I GS D V VW+ + R +Y L GH I+ F+ D Sbjct: 226 SFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWD 272 >ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis familiaris] Length = 406 Score = 119 bits (298), Expect = 5e-27 Identities = 83/273 (30%), Positives = 122/273 (44%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH + F N LAS D +++W++ Y GH AV ++++ G + Sbjct: 17 GHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-FAGHKDAVTCVNFSPSGHL 75 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R Sbjct: 76 LASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 +K Q+ V F+ I+S D +K+WD + ++ H VT Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 +MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ + Sbjct: 195 FHPSGTCIAAASMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLLT 246 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R+LY L GH G VAF Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279 Score = 107 bits (268), Expect = 1e-23 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 3/253 (1%) Frame = +1 Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396 +GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGES---TVFRAHTATVRSVHFCSD 114 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G L +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CARFSPDGRLIVSASDDKTVKLWD 173 Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + + ++ ++ V V F+ + I + +DN +KVWD+R ++L + H+ +V Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN 233 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 + D+T+++ D+ + R + +H + ++S G Sbjct: 234 ALSFHPSGNYLLTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285 Query: 934 IAAGSADRFVYVW 972 A+G +D V VW Sbjct: 286 FASGGSDEQVMVW 298 Score = 94.7 bits (234), Expect = 1e-19 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 4/236 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH A+ + ++ + L S S D + VW + R R GH V +C Sbjct: 16 KGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAV-TCVNFSPSGH 74 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ +GS D TV++W K F+ +T V +V F +++ D +KVW + Sbjct: 75 LLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888 K +++ H + V + D TV++WD K + VH++ Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183 Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 ++ + + P G+ IAA S D V VWD + R+L H+ ++N ++FHP Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239 Score = 75.1 bits (183), Expect = 1e-13 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381 LS H V C +F P+G + SA D+ + LW+ V+ C+ H G V + Sbjct: 141 LSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ G+ + +AS D TV VWD T ++ + H++ VN+ G L+ T S D T Sbjct: 194 DFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLL-TASSDST 252 Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696 +K+ D+ + + T + V F+ T + SGG D + VW Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298 >ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 3 [Canis familiaris] Length = 623 Score = 119 bits (297), Expect = 6e-27 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 333 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 393 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 506 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 561 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 G +AAGSA+ +Y+W S ++ L H SIN VA+ P Sbjct: 562 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 603 >ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 1 [Canis familiaris] Length = 588 Score = 119 bits (297), Expect = 6e-27 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 298 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 526 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 G +AAGSA+ +Y+W S ++ L H SIN VA+ P Sbjct: 527 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 568 >ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 2 [Canis familiaris] Length = 607 Score = 119 bits (297), Expect = 6e-27 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++ Sbjct: 317 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 GS L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ +++ D+R A ++ F + R +SPD Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 545 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 G +AAGSA+ +Y+W S ++ L H SIN VA+ P Sbjct: 546 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 587 >ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris] Length = 833 Score = 112 bits (279), Expect = 8e-25 Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH+ + F P+G LA+A +D ++LWN + + GH V + ++ G++ Sbjct: 371 GHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYV-GHKDVVTSVQFSPLGNL 429 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L SAS D+TV +W + + K HT+ V S + G Q + T S+D ++K+W++ R Sbjct: 430 LASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWNMYR 488 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 ++ +++T+ V F+ I+S D IK+WD + Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVD 548 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 D+TV++WD+R + ++ +Q VH+ N + S+ P G+ I Sbjct: 549 FNPNGTCIASAGSDHTVKIWDIRV----NKLLQHYQ--VHSGGVNCV--SFHPSGNYIIT 600 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R++Y L GH G + V+F Sbjct: 601 ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSF 633 Score = 104 bits (259), Expect = 2e-22 Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 1/258 (0%) Frame = +1 Query: 202 QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 381 QA GH+ V +F P G+ LASA DR + LW + + K H+ V + Sbjct: 405 QARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLW-IPDKRGKSSEFKAHTAPVRSV 463 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ DG L +AS DK++ VW+ + L HT +V C +L+ + S+D T Sbjct: 464 DFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 522 Query: 562 VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738 +K+WD K + F ++ V FN I S G D+ +K+WD+R NKL + H Sbjct: 523 IKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 582 Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918 + V + D T+++ D+ + R + QG+ + S+S Sbjct: 583 SGGVNCVSFHPSGNYIITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 634 Query: 919 PDGSKIAAGSADRFVYVW 972 G ++G AD V +W Sbjct: 635 KGGELFSSGGADTQVLLW 652 Score = 99.0 bits (245), Expect = 7e-21 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 3/235 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH A+ + ++ G L +AS D + +W+ + R R GH V S + G Sbjct: 370 KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLG-N 428 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ + S D TV+LW K+ F+ +T V +V F+ + + D IKVW++ + Sbjct: 429 LLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYR 488 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 882 + Y++ H V + D T+++WD ++CV F +V Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDSVGFA 544 Query: 883 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 NF ++P+G+ IA+ +D V +WD ++L H+G +N V+FHP Sbjct: 545 NF------VDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHP 593 >ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) isoform 2 [Canis familiaris] Length = 655 Score = 108 bits (270), Expect = 9e-24 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Frame = +1 Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624 ++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66 Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804 +V N + I++G I+VWDL K+ T+ GH ++ + D Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126 Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981 +++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177 Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053 + +++ + PGH G +N V FHP++ Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201 Score = 93.6 bits (231), Expect = 3e-19 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444 +G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90 Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621 D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149 Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801 V + F+ + S D+ +K+WDL K+ GH V + Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209 Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975 D T+R WD+ F C++ G V + ++PDG + +G D VY W+ Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260 Score = 90.5 bits (223), Expect = 2e-18 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%) Frame = +1 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G +L + D V +W + L GHTS V S +L+ GS G++++WD Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91 Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 A D+TV++WD+ + + F G H N++ + P+ Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 +A+GS+DR + WD +++ + G G + V F+PD Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242 Score = 78.2 bits (191), Expect = 1e-14 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393 L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++ Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216 Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681 D+ K + + V +V FN + SG D+ Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253 >ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) isoform 1 [Canis familiaris] Length = 655 Score = 108 bits (270), Expect = 9e-24 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Frame = +1 Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624 ++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66 Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804 +V N + I++G I+VWDL K+ T+ GH ++ + D Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126 Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981 +++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177 Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053 + +++ + PGH G +N V FHP++ Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201 Score = 93.6 bits (231), Expect = 3e-19 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444 +G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90 Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621 D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149 Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801 V + F+ + S D+ +K+WDL K+ GH V + Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209 Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975 D T+R WD+ F C++ G V + ++PDG + +G D VY W+ Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260 Score = 90.5 bits (223), Expect = 2e-18 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%) Frame = +1 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G +L + D V +W + L GHTS V S +L+ GS G++++WD Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91 Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 A D+TV++WD+ + + F G H N++ + P+ Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 +A+GS+DR + WD +++ + G G + V F+PD Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242 Score = 78.2 bits (191), Expect = 1e-14 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393 L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++ Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216 Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681 D+ K + + V +V FN + SG D+ Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,950,665 Number of Sequences: 33732 Number of extensions: 986232 Number of successful extensions: 6488 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4341 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 3876575502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-007057 (1054 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo s... 599 e-171 Alignment gi|NP_061942.2| WD repeat domain 5B [Homo sapiens] 154 1e-37 Alignment gi|NP_438172.1| WD repeat domain 5 [Homo sapiens] 150 2e-36 Alignment gi|NP_060058.1| WD repeat domain 5 [Homo sapiens] 150 2e-36 Alignment gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] 129 4e-30 Alignment gi|NP_056241.2| WD repeat domain 51A [Homo sapiens] 120 1e-27 Alignment gi|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens] 120 3e-27 Alignment gi|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens] 120 3e-27 Alignment gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 119 6e-27 Alignment gi|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 116 3e-26 >ref|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo sapiens] Length = 357 Score = 599 bits (1544), Expect = e-171 Identities = 294/340 (86%), Positives = 297/340 (87%) Frame = +1 Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213 MI+QQKRKGPELPLVPVKRQRHE RCSSLQAPI Sbjct: 1 MIDQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPP-RCSSLQAPI 59 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT Sbjct: 60 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 119 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPAR+ PQLVCTGSDDGTVKLW Sbjct: 120 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARKSPQLVCTGSDDGTVKLW 179 Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT Sbjct: 180 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 239 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK Sbjct: 240 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 299 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 IAAGSADRFVYVWD TSRRILYKLPGHAGSINEVAFHPD+ Sbjct: 300 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 339 >ref|NP_061942.2| WD repeat domain 5B [Homo sapiens] Length = 330 Score = 154 bits (389), Expect = 1e-37 Identities = 94/279 (33%), Positives = 147/279 (52%), Gaps = 3/279 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L GH V KF PNG LAS+ DRLI++W Y D TL GH+ + ++ +++D Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDS 95 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579 S L SAS DKT+ +WD +G+ +K LKGH+++V C L+ +GS D TVK+W++ Sbjct: 96 SRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154 Query: 580 RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-SVT 753 + ++T ++ V AV FN + I+SG D ++WD + T+ + V+ Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 +DNT+++WD + RC+K + G H EK + ++S G K Sbjct: 215 FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCIFANFSVTGGK 268 Query: 934 -IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 I +GS D VY+W+ ++ I+ KL GH + A HP Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHP 307 Score = 104 bits (259), Expect = 1e-22 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W V G C TL HS V +H+N Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCS 178 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S S D +WD+ +G+ +K L + S + + T + D T+KLWD Sbjct: 179 GSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 + ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D Sbjct: 239 YSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 298 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T+++W Sbjct: 299 VVISAACHPTENLIASAALENDKTIKLW 326 >ref|NP_438172.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 150 bits (378), Expect = 2e-36 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573 ++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156 Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747 D++ ++T ++ V AV FN I+S D ++WD + T+ + Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216 Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927 V+ +DNT+++WD K +C+K + G H EK + ++S G Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270 Query: 928 SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 K I +GS D VY+W+ ++ I+ KL GH + A HP Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311 Score = 106 bits (265), Expect = 3e-23 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T+++W Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330 Score = 67.0 bits (162), Expect = 3e-11 Identities = 37/147 (25%), Positives = 67/147 (45%) Frame = +1 Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789 +T V +V F+ + + S D IK+W K T+ GH ++ Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103 Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969 + D T+++WDV +C+K +G+ + C+++P + I +GS D V + Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155 Query: 970 WDYTSRRILYKLPGHAGSINEVAFHPD 1050 WD + + L LP H+ ++ V F+ D Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182 >ref|NP_060058.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 150 bits (378), Expect = 2e-36 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573 ++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156 Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747 D++ ++T ++ V AV FN I+S D ++WD + T+ + Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216 Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927 V+ +DNT+++WD K +C+K + G H EK + ++S G Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270 Query: 928 SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 K I +GS D VY+W+ ++ I+ KL GH + A HP Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311 Score = 106 bits (265), Expect = 3e-23 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T+++W Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330 Score = 67.0 bits (162), Expect = 3e-11 Identities = 37/147 (25%), Positives = 67/147 (45%) Frame = +1 Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789 +T V +V F+ + + S D IK+W K T+ GH ++ Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103 Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969 + D T+++WDV +C+K +G+ + C+++P + I +GS D V + Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155 Query: 970 WDYTSRRILYKLPGHAGSINEVAFHPD 1050 WD + + L LP H+ ++ V F+ D Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182 >ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] Length = 415 Score = 129 bits (324), Expect = 4e-30 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393 L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 +++ + S D T +WD + GE V L+GH++ + S G +++ TGS D TV +W Sbjct: 188 QSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII-TGSFDHTVVVW 246 Query: 574 DIRKKAAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750 D + + ++ + +FN I++G +D K+WD K T+ GH D + Sbjct: 247 DADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEI 306 Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930 + D T R++ A +C+ +G+ E + + S++P G+ Sbjct: 307 LDSCFDYTGKLIATASADGTARIFS----AATRKCIAKLEGH----EGEISKISFNPQGN 358 Query: 931 KIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFH 1044 + GS+D+ +WD + + L L GH I AF+ Sbjct: 359 HLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 396 Score = 127 bits (319), Expect = 2e-29 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441 +GS + +DR LW+ + TL+GH V + +N G + + S DKT + Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161 Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618 W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++ Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSA 220 Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798 ++++++FN + D+II+G D+ + VWD + + GH ++ + Sbjct: 221 EIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGS 280 Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDY 978 MD T ++WD A +CV G+ + +L + G IA SAD ++ Sbjct: 281 MDKTCKLWD----ATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 332 Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047 +R+ + KL GH G I++++F+P Sbjct: 333 ATRKCIAKLEGHEGEISKISFNP 355 Score = 119 bits (297), Expect = 6e-27 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH E+ C F+P + +A+ D LW++ + Y TL+GHS ++ L +NT G Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVY-TLRGHSAEIISLSFNTSGDR 233 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585 + + S D TV VWD++TG +V L GH + ++S L+ TGS D T KLWD Sbjct: 234 IITGSFDHTVVVWDADTGRKVNILIGHCAEISSA-SFNWDCSLILTGSMDKTCKLWDATN 292 Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 + T + ++L F+ T I + D +++ K + GH ++ Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS 352 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 + D T R+WD A +C+++ +G+ + C+++ G+ + Sbjct: 353 FNPQGNHLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGNIVIT 404 Query: 943 GSADRFVYVW 972 GS D +W Sbjct: 405 GSKDNTCRIW 414 Score = 111 bits (278), Expect = 9e-25 Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 1/235 (0%) Frame = +1 Query: 340 YATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPAR 519 + LK H + + N GS + S D+T +WD+ +GE + L+GH + V + Sbjct: 85 FKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNN 144 Query: 520 RGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696 + TGS D T KLW + TF+ +T +++ ++FN S + +G +D K+W Sbjct: 145 PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLW 204 Query: 697 DLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGN 876 D++ + YT+RGH+ + + D+TV VWD A R V I G Sbjct: 205 DIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWD----ADTGRKVNILIG- 259 Query: 877 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 H E + +W D S I GS D+ +WD T+ + + L GH I + F Sbjct: 260 -HCAEISSASFNW--DCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCF 311 Score = 96.7 bits (239), Expect = 3e-20 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 5/209 (2%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCD---NYATLKGHSGAVMEL 381 + L GH E+ F+ +G + + FD +++W D D L GH + Sbjct: 212 VYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVW----DADTGRKVNILIGHCAEISSA 267 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDG 558 +N D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DG Sbjct: 268 SFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYT--GKLIATASADG 325 Query: 559 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735 T +++ + I + + ++ ++FN + +++G D ++WD + + + G Sbjct: 326 TARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385 Query: 736 HADSVTXXXXXXXXXXXXXNAMDNTVRVW 822 H D + + DNT R+W Sbjct: 386 HTDEIFSCAFNYKGNIVITGSKDNTCRIW 414 Score = 81.6 bits (200), Expect = 1e-15 Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 22/261 (8%) Frame = +1 Query: 334 DNYATLKGHSGAVMELHYNTDGSML----------FSASTDKTVAVWDSETGERVKRLKG 483 + + LK S +++L +TD S L +AS + V + E++ + Sbjct: 20 EKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSN 79 Query: 484 HTSFVNSCYPARRGP----------QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL-A 630 HT ++ A P TGS D T KLWD + T + V+ A Sbjct: 80 HTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYA 139 Query: 631 VTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDN 807 + FN+ D+I +G D K+W + K +T RGH + +MD Sbjct: 140 IAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDT 199 Query: 808 TVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSR 987 T ++WD+ + +++ H+ E ++ S++ G +I GS D V VWD + Sbjct: 200 TAKLWDI------QNGEEVYTLRGHSAE--IISLSFNTSGDRIITGSFDHTVVVWDADTG 251 Query: 988 RILYKLPGHAGSINEVAFHPD 1050 R + L GH I+ +F+ D Sbjct: 252 RKVNILIGHCAEISSASFNWD 272 >ref|NP_056241.2| WD repeat domain 51A [Homo sapiens] Length = 407 Score = 120 bits (302), Expect = 1e-27 Identities = 84/273 (30%), Positives = 122/273 (44%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH V C F N LAS D +++W++ Y GH AV ++++ G + Sbjct: 17 GHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHL 75 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L S S DKTV +W + HT+ V S + G V T SDD TVK+W R Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWATHR 134 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 +K Q+ V F+ I+S D +K+WD + ++ H VT Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD 194 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 MDNTV+VWDVR + R ++ +Q +H+ N L S+ P G+ + Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDVRTY----RLLQHYQ--LHSAAVNGL--SFHPSGNYLIT 246 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R+LY L GH G VAF Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279 Score = 106 bits (265), Expect = 3e-23 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 3/253 (1%) Frame = +1 Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396 +GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD Sbjct: 115 GQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173 Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + + ++ ++ V V F+ + I + G+DN +KVWD+R +L + H+ +V Sbjct: 174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVN 233 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 + D+T+++ D+ + R + +H + ++S G Sbjct: 234 GLSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285 Query: 934 IAAGSADRFVYVW 972 A+G +D V VW Sbjct: 286 FASGGSDEQVMVW 298 Score = 89.0 bits (219), Expect = 6e-18 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 4/236 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH AV + ++ + L S S D + VW + R R GH V +C Sbjct: 16 KGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAV-TCVNFSPSGH 74 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ +GS D TV++W K F+ +T V +V F ++ D +KVW + Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR 134 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888 K +++ H + V + D TV++WD K + VH++ Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KSSRECVHSY 183 Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 ++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHP 239 Score = 74.7 bits (182), Expect = 1e-13 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381 LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V + Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCE-------HGGFVTYV 193 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ G+ + +A D TV VWD T ++ + H++ VN G L+ T S D T Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTYRLLQHYQLHSAAVNGLSFHPSGNYLI-TASSDST 252 Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696 +K+ D+ + + T + V F+ T + SGG D + VW Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298 >ref|NP_060444.2| APG16 autophagy 16-like isoform 2 [Homo sapiens] Length = 504 Score = 120 bits (300), Expect = 3e-27 Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387 + + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + + Sbjct: 212 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 271 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567 ++ GS L +AS D +W + L GH+ V S ++V +GS D T+K Sbjct: 272 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 330 Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738 LWD+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 331 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 384 Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918 +T + D+ ++V D+R A K+ F + R +S Sbjct: 385 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 440 Query: 919 PDGSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P Sbjct: 441 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 484 >ref|NP_110430.4| APG16 autophagy 16-like isoform 1 [Homo sapiens] Length = 523 Score = 120 bits (300), Expect = 3e-27 Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387 + + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + + Sbjct: 231 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 290 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567 ++ GS L +AS D +W + L GH+ V S ++V +GS D T+K Sbjct: 291 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 349 Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738 LWD+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 350 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 403 Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918 +T + D+ ++V D+R A K+ F + R +S Sbjct: 404 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 459 Query: 919 PDGSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P Sbjct: 460 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 503 >ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens] Length = 315 Score = 119 bits (297), Expect = 6e-27 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 3/235 (1%) Frame = +1 Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537 H G V ++ DG ML + S D V W++ +G+ + RL GHT V C + G L Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78 Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714 + S D TV+LWD+ + ++ + + V V+F+ S Q+ SGG D + +WD++ + Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138 Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAP--KERCVKIFQGNVHNF 888 + + GH DS+ + D+TVR+WD+R P + ++ GN+ Sbjct: 139 MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNI--- 195 Query: 889 EKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 C +A+GS D+ +++W T+ +L +L GH + +AF PD+ Sbjct: 196 -----SCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245 Score = 102 bits (254), Expect = 5e-22 Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 5/251 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L GH G V C+F P+G ASA D + LW+V LKGH +V + ++ D Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 573 L S DK V +WD ++G+ ++ L GH + S + P + C TGS D TV++W Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVRIW 174 Query: 574 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R + Q + ++ S + SG D I +W + L ++GH Sbjct: 175 DLRMVTPAVSHQALEGHSGNISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 V V+VWD +C++ + V + C+++PD Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287 Query: 925 GSKIAAGSADR 957 G + +G+AD+ Sbjct: 288 GKILVSGAADQ 298 Score = 80.9 bits (198), Expect = 2e-15 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 6/280 (2%) Frame = +1 Query: 229 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408 H GEV F P+G L + D + W L GH+G V ++ DG + Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78 Query: 409 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588 SAS D TV +WD + ++ LKGH V + + QL +G D V LWD++ Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137 Query: 589 AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 756 ++ + + + F+ T + + +G D+ +++WDLR + + GH+ +++ Sbjct: 138 QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNIS- 196 Query: 757 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933 + D T+ +W P + I +G+V + K++ ++SPD Sbjct: 197 CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247 Query: 934 IAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHPD 1050 +A+ R V VWD + + L L G + AF PD Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPD 287 Score = 70.1 bits (170), Expect = 3e-12 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 5/179 (2%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390 + +L GH+ V F P+ LAS G+D+ ++LW+V L GH ++ ++ Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156 Query: 391 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558 + L + S D TV +WD + L+GH+ ++ CY A L+ +GS D Sbjct: 157 PTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCLCYSA---SGLLASGSWDK 213 Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 732 T+ +W IQ + V ++ F+ + S G +KVWD K T++ Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272 Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/147 (26%), Positives = 72/147 (48%) Frame = +1 Query: 607 QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 786 Q+ +V + F+ +++G D + W+ R +L + + GH V Sbjct: 19 QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78 Query: 787 XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 966 + D TVR+WDV + +C+++ +G+ ++++ S+SPD ++A+G D+ V Sbjct: 79 ASASCDCTVRLWDV----ARAKCLRVLKGH----QRSVETVSFSPDSRQLASGGWDKRVM 130 Query: 967 VWDYTSRRILYKLPGHAGSINEVAFHP 1047 +WD S ++L L GH SI F P Sbjct: 131 LWDVQSGQMLRLLVGHRDSIQSSDFSP 157 >ref|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens] Length = 315 Score = 116 bits (291), Expect = 3e-26 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 1/233 (0%) Frame = +1 Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537 H G V ++ DG ML + S D V W++ +G+ + RL GHT V C + G L Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDG-HLF 78 Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714 + S D TV+LWD+ + ++ + + V V+F+ S Q+ SGG D + +WD++ + Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQ 138 Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894 + + GH DS+ + D+TV +WD+R P + + Sbjct: 139 MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTP-----AVSHQALEGHSA 193 Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 N+ +S G +A+GS D+ +++W T+ +L +L GH + +AF PD+ Sbjct: 194 NISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245 Score = 101 bits (252), Expect = 9e-22 Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 5/251 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L GH G V C+F P+G ASA D + LW+V LKGH +V + ++ D Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDV-ARAKCLRVLKGHQRSVETVSFSPDS 117 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVC--TGSDDGTVKLW 573 L S DK V +WD ++G+ ++ L GH + S + P + C TGS D TV +W Sbjct: 118 RQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS---SDFSPTVNCLATGSWDSTVHIW 174 Query: 574 DIR---KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R + Q + ++ S + SG D I +W + L ++GH Sbjct: 175 DLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVT 234 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 V V+VWD +C++ + V + C+++PD Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCN----TGKCLETLKQGVLDVAHT---CAFTPD 287 Query: 925 GSKIAAGSADR 957 G + +G+AD+ Sbjct: 288 GKILVSGAADQ 298 Score = 79.3 bits (194), Expect = 5e-15 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 6/280 (2%) Frame = +1 Query: 229 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408 H GEV F P+G L + D + W L GH+G V ++ DG + Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSG-QLLWRLGGHTGPVKFCRFSPDGHLF 78 Query: 409 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588 SAS D TV +WD + ++ LKGH V + + QL +G D V LWD++ Sbjct: 79 ASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQL-ASGGWDKRVMLWDVQSG 137 Query: 589 AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT---MRGHADSVTX 756 ++ + + + F+ T + + +G D+ + +WDLR + + GH+ +++ Sbjct: 138 QMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANIS- 196 Query: 757 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933 + D T+ +W P + I +G+V + K++ ++SPD Sbjct: 197 CLCYSASGLLASGSWDKTIHIW-----KPTTSSLLIQLKGHV-TWVKSI---AFSPDELW 247 Query: 934 IAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHPD 1050 +A+ R V VWD + + L L G + AF PD Sbjct: 248 LASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPD 287 Score = 70.1 bits (170), Expect = 3e-12 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%) Frame = +1 Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390 + +L GH+ V F P+ LAS G+D+ ++LW+V L GH ++ ++ Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDFS 156 Query: 391 TDGSMLFSASTDKTVAVWDSE---TGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558 + L + S D TV +WD + L+GH++ ++ CY A L+ +GS D Sbjct: 157 PTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA---SGLLASGSWDK 213 Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR 732 T+ +W IQ + V ++ F+ + S G +KVWD K T++ Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272 Score = 68.2 bits (165), Expect = 1e-11 Identities = 39/147 (26%), Positives = 72/147 (48%) Frame = +1 Query: 607 QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXX 786 Q+ +V + F+ +++G D + W+ R +L + + GH V Sbjct: 19 QHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLF 78 Query: 787 XXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY 966 + D TVR+WDV + +C+++ +G+ ++++ S+SPD ++A+G D+ V Sbjct: 79 ASASCDCTVRLWDV----ARAKCLRVLKGH----QRSVETVSFSPDSRQLASGGWDKRVM 130 Query: 967 VWDYTSRRILYKLPGHAGSINEVAFHP 1047 +WD S ++L L GH SI F P Sbjct: 131 LWDVQSGQMLRLLVGHRDSIQSSDFSP 157 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,425,847 Number of Sequences: 39411 Number of extensions: 970484 Number of successful extensions: 5317 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2444 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3705 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3387655882 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-007057 (1054 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus m... 553 e-159 Alignment gi|NP_081389.1| WD repeat domain 5B [Mus musculus] 162 7e-40 Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 150 3e-36 Alignment gi|NP_081630.1| WD repeat domain 51A [Mus musculus] 120 2e-27 Alignment gi|NP_084122.2| APG16L beta isoform [Mus musculus] 118 9e-27 Alignment gi|NP_082016.1| WD repeat domain 51B [Mus musculus] 116 3e-26 Alignment gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] 115 6e-26 Alignment gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ... 108 9e-24 Alignment gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate... 103 2e-22 Alignment gi|XP_910822.1| PREDICTED: similar to APG16L beta isoform [Mus ... 102 7e-22 >ref|NP_079921.1| U5 snRNP-specific protein (Prp8-binding) [Mus musculus] Length = 370 Score = 553 bits (1424), Expect(2) = e-159 Identities = 269/313 (85%), Positives = 271/313 (86%) Frame = +1 Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213 MIEQQKRKGPELPLVPVKR RHE RCSSLQAPI Sbjct: 1 MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPI 60 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180 Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 DIRK+AA+QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT Sbjct: 181 DIRKRAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK Sbjct: 241 DLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300 Query: 934 IAAGSADRFVYVW 972 IAAGSADRFVYVW Sbjct: 301 IAAGSADRFVYVW 313 Score = 29.3 bits (64), Expect(2) = e-159 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +2 Query: 980 QAGGFCINYPAMLAPSMKWLFTLTN 1054 QA G C + LAPSMKWL T T+ Sbjct: 316 QAEGSCTSCLVTLAPSMKWLSTPTS 340 >ref|NP_081389.1| WD repeat domain 5B [Mus musculus] Length = 328 Score = 162 bits (409), Expect = 7e-40 Identities = 95/284 (33%), Positives = 149/284 (52%), Gaps = 4/284 (1%) Frame = +1 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYN 390 + L+GH + KF PNG LAS+ D LI++W Y G+C TL GHS + ++ ++ Sbjct: 33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKK--TLYGHSLEISDVAWS 90 Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL 570 +D S L SAS DKT+ VWD +G+ +K LKGH+ FV C L+ +GS D +VK+ Sbjct: 91 SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKI 149 Query: 571 WDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD- 744 W+++ ++T ++ + AV FN I+SG D ++WD + T+ + Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 V+ +DNT+++WD + RC+K + G H EK L S+S Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCLFASFSVT 263 Query: 925 GSK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 G K + +GS D VY+W+ ++ I+ +L GH + A HP K Sbjct: 264 GRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK 307 Score = 101 bits (252), Expect = 1e-21 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W V G C TL HS + +++N + Sbjct: 119 LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC--LKTLSAHSDPISAVNFNCN 176 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S S D +WD+ +G+ ++ L + S + + T + D T+KLWD Sbjct: 177 GSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 + ++T+ +N L +F+ T + ++SG DN + +W+L+ ++ ++GH D Sbjct: 237 YSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTD 296 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T++VW Sbjct: 297 VVISAACHPTKNIIASAALENDKTIKVW 324 >ref|NP_543124.1| WD repeat domain 5 [Mus musculus] Length = 334 Score = 150 bits (378), Expect = 3e-36 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 5/281 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399 L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99 Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573 ++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156 Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747 D++ ++T ++ V AV FN I+S D ++WD + T+ + Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216 Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927 V+ +DNT+++WD K +C+K + G H EK + ++S G Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270 Query: 928 SK-IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 K I +GS D VY+W+ ++ I+ KL GH + A HP Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311 Score = 106 bits (265), Expect = 4e-23 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 7/208 (3%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242 Query: 577 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302 Query: 745 SVTXXXXXXXXXXXXXNAMDN--TVRVW 822 V A++N T+++W Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330 Score = 67.0 bits (162), Expect = 3e-11 Identities = 37/147 (25%), Positives = 67/147 (45%) Frame = +1 Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789 +T V +V F+ + + S D IK+W K T+ GH ++ Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103 Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969 + D T+++WDV +C+K +G+ + C+++P + I +GS D V + Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155 Query: 970 WDYTSRRILYKLPGHAGSINEVAFHPD 1050 WD + + L LP H+ ++ V F+ D Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182 >ref|NP_081630.1| WD repeat domain 51A [Mus musculus] Length = 405 Score = 120 bits (302), Expect = 2e-27 Identities = 83/273 (30%), Positives = 121/273 (44%), Gaps = 1/273 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH V C F N LAS D +++W++ Y GH AV ++++ G + Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYR-FTGHKDAVTCVNFSPSGHL 75 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582 L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134 Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 ++ Q+ V F+ I+S D +K+WD + ++ H VT Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 MDNTV+VWD R R ++ +Q +H+ N L S+ P G+ + Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDAR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLIT 246 Query: 943 GSADRFVYVWDYTSRRILYKLPGHAGSINEVAF 1041 S+D + + D R+LY L GH G VAF Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279 Score = 109 bits (272), Expect = 6e-24 Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 3/253 (1%) Frame = +1 Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396 +GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G L +AS DKTV VW + + L H ++V C +L+ + SDD TVKLWD Sbjct: 115 GQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173 Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + I ++ ++ V V F+ + I + G+DN +KVWD R ++L + H+ +V Sbjct: 174 KTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN 233 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 + D+T+++ D+ + R + +H + ++S G Sbjct: 234 ALSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285 Query: 934 IAAGSADRFVYVW 972 A+G +D V VW Sbjct: 286 FASGGSDEQVMVW 298 Score = 92.0 bits (227), Expect = 9e-19 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 4/236 (1%) Frame = +1 Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531 KGH AV + ++ + L S S D T+ +W ++ R R GH V +C Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAV-TCVNFSPSGH 74 Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708 L+ +GS D TV++W K F+ +T V +V F +++ D +KVW + Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134 Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888 + +++ H + V + D TV++WD K + +H++ Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECIHSY 183 Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHP 1047 ++ + + P G+ IAA D V VWD + R+L H+ ++N ++FHP Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHP 239 Score = 75.1 bits (183), Expect = 1e-13 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381 L+ H V C KF P+G + SA D+ + LW+ ++ C+ H G V + Sbjct: 141 LTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCE-------HGGFVTYV 193 Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561 ++ G+ + +A D TV VWD+ T ++ + H++ VN+ G L+ T S D T Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDST 252 Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696 +K+ D+ + + T + V F+ T + SGG D + VW Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298 Score = 71.6 bits (174), Expect = 1e-12 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 2/195 (1%) Frame = +1 Query: 469 KRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFND 645 + KGH V +C + + +GS D T+ +W ++ ++ F V V F+ Sbjct: 13 RHFKGHRDAV-TCVDFSLNTKHLASGSMDSTLMIWHMKSQSRAYRFTGHKDAVTCVNFSP 71 Query: 646 TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWD 825 + + SG D +++W + R H +V + D TV+VW Sbjct: 72 SGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWS 131 Query: 826 VRPFAPKERCVKIFQGNVHNFEKNLLRCS-WSPDGSKIAAGSADRFVYVWDYTSRRILYK 1002 ++R + ++ N +RC+ +SPDG I + S D+ V +WD TSR ++ Sbjct: 132 TH----RQRFLFSLTQHI-----NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHS 182 Query: 1003 LPGHAGSINEVAFHP 1047 H G + V FHP Sbjct: 183 YCEHGGFVTYVDFHP 197 >ref|NP_084122.2| APG16L beta isoform [Mus musculus] Length = 607 Score = 118 bits (296), Expect = 9e-27 Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 5/282 (1%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393 + H+GEV +F P LA+ G DR + LW +GD C+ +L G + + + +++ Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 376 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 G+ L +AS D +W + L GH+ V S ++V +GS D T+KLW Sbjct: 377 AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435 Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 D+R K I+T + ND T ++SG D I+ WD+R + M Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 489 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 +T + D+ ++V D+R A K+ F + R +SPD Sbjct: 490 KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 545 Query: 925 GSKIAAGSADRFVYVWDYTSRRILYKL-PGHAGSINEVAFHP 1047 GS +AAGSA+ +YVW + ++ L H+ SIN VA+ P Sbjct: 546 GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 587 >ref|NP_082016.1| WD repeat domain 51B [Mus musculus] Length = 476 Score = 116 bits (291), Expect = 3e-26 Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 3/289 (1%) Frame = +1 Query: 193 SSLQAPIMLLS--GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 366 S L+ PI+ S GH+ + F PN +A+A +D ++LW++ Y + GH Sbjct: 3 SGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYV-GHKD 61 Query: 367 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 546 V L ++ G++L SAS D+TV +W + + K HT+ V S + G QL+ T Sbjct: 62 VVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADG-QLLVTA 120 Query: 547 SDDGTVKLWDI-RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTY 723 S+D ++K+W + R++ +++T+ V F+ I+S D IK+WD + Sbjct: 121 SEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN 180 Query: 724 TMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLL 903 D+ V++WD+R + ++ +Q VH+ N L Sbjct: 181 NFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR----MNKLLQHYQ--VHSCGVNCL 234 Query: 904 RCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 S+ P G+ + S+D V + D R++Y L GH G + V+F D Sbjct: 235 --SFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKD 281 Score = 109 bits (273), Expect = 4e-24 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 1/250 (0%) Frame = +1 Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405 GH+ V +F P G+ LASA DR + LW V + K H+ V + ++ DG + Sbjct: 58 GHKDVVTSLQFSPQGNLLASASRDRTVRLW-VLDRKGKSSEFKAHTAPVRSVDFSADGQL 116 Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585 L +AS DK++ VW + L HT +V C +L+ + S+D T+K+WD Sbjct: 117 LVTASEDKSIKVWSMFRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKTIKIWDTTN 175 Query: 586 KAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762 K + F ++ V FN I S G D+ +K+WD+R NKL + H+ V Sbjct: 176 KQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLS 235 Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942 + D TV++ D+ + R + QG+ + S+S DG + + Sbjct: 236 FHPLGNSLVTASSDGTVKMLDLI----EGRLIYTLQGHTGP----VFTVSFSKDGELLTS 287 Query: 943 GSADRFVYVW 972 G AD V +W Sbjct: 288 GGADAQVLIW 297 >ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus] Length = 303 Score = 115 bits (289), Expect = 6e-26 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 1/233 (0%) Frame = +1 Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537 H G V ++ DG L +AS D V VW +++G + RL GH V SC + G +L+ Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDG-RLI 83 Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714 + S D +++LWD+ + + + + V V+F+ S Q+ SGG D VW+++ + Sbjct: 84 ASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR 143 Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894 + + GH DS+ + D+TV +WD+R P + N+ Sbjct: 144 RVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP-----VVSYHNLEGHTG 198 Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPDK 1053 N+ +S G +A+GS D+ + VW T+ + +L GH +N +AF PD+ Sbjct: 199 NISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDE 250 Score = 104 bits (259), Expect = 2e-22 Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 5/249 (2%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396 L+GH G V C F P+G +AS+ D I LW+V C + LKGH +V + ++ D Sbjct: 64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLH--VLKGHQRSVETVSFSPD 121 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 L S DK VW+ ++G RV L GH + S + L TGS D TV +WD Sbjct: 122 SKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSL-ATGSWDSTVHIWD 180 Query: 577 IRKKAAIQTFQN----TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744 +R + ++ N T + + ++ S + SG D I VW N L ++GH Sbjct: 181 LRASTPVVSYHNLEGHTGNISCLCYS-ASGLLASGSWDKTICVWKPTTNNLPLQLKGHTI 239 Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924 V TV+VWD +C++ +G + C ++PD Sbjct: 240 WVNSLAFSPDELKLASAGYSRTVKVWD----CLTGKCLETLKGMLDVAH----ACIFTPD 291 Query: 925 GSKIAAGSA 951 G + +G+A Sbjct: 292 GKLLVSGAA 300 Score = 95.9 bits (237), Expect = 6e-20 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%) Frame = +1 Query: 196 SLQAPIMLLSG-------HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLK 354 +++AP L G H GEV C F P+G TL +A D + +W + L Sbjct: 7 NIRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLW-RLA 65 Query: 355 GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 534 GH G V ++ DG ++ S+S+D ++ +WD + + LKGH V + + QL Sbjct: 66 GHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQL 125 Query: 535 VCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 711 G D + +W+++ + + + + F+ TSD + +G D+ + +WDLR + Sbjct: 126 ASGGWDKRAI-VWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRAS 184 Query: 712 KLT---YTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH 882 + + GH +++ + D T+ VW P + + Q H Sbjct: 185 TPVVSYHNLEGHTGNIS-CLCYSASGLLASGSWDKTICVW-----KPTTNNLPL-QLKGH 237 Query: 883 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 N L ++SPD K+A+ R V VWD + + L L G + F PD Sbjct: 238 TIWVNSL--AFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPD 291 >ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus] Length = 658 Score = 108 bits (270), Expect = 9e-24 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Frame = +1 Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624 ++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66 Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804 +V N + I++G I+VWDL K+ T+ GH ++ + D Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126 Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWDYT 981 +++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +WD T Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177 Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053 + +++ + PGH G +N V FHP++ Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201 Score = 93.6 bits (231), Expect = 3e-19 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 2/239 (0%) Frame = +1 Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444 +G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90 Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621 D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149 Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801 V + F+ + S D+ +K+WDL K+ GH V + Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209 Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWD 975 D T+R WD+ F C++ G V + ++PDG + +G D VY W+ Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260 Score = 90.5 bits (223), Expect = 3e-18 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%) Frame = +1 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 G +L + D V +W + L GHTS V S +L+ GS G++++WD Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91 Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 + ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933 A D+TV++WD+ + + F G H N++ + P+ Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203 Query: 934 IAAGSADRFVYVWDYTSRRILYKLPGHAGSINEVAFHPD 1050 +A+GS+DR + WD +++ + G G + V F+PD Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242 Score = 78.2 bits (191), Expect = 1e-14 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Frame = +1 Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393 L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++ Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216 Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681 D+ K + + V +V FN + SG D+ Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253 >ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Mus musculus] Length = 589 Score = 103 bits (258), Expect = 2e-22 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%) Frame = +1 Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 396 +L GH G VY +F + S L S D I W++ G N +GH+ V ++ + Sbjct: 337 ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL-GSFTNTVLYQGHAYPVWDVDISPF 395 Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576 S S D+T +W + ++ GH + V+ C + TGS D TV+LW Sbjct: 396 SLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD-CVKFHPNSNYLATGSTDKTVRLWS 454 Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753 ++ +++ F + VL+++F+ + S G D +K+WDL L +RGH DS+T Sbjct: 455 AQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT 514 Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVR 831 +MDN+VRVWD+R Sbjct: 515 SLAFSPDSGLIASASMDNSVRVWDIR 540 Score = 84.7 bits (208), Expect = 1e-16 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Frame = +1 Query: 208 PIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHY 387 P+ + +GH +V C KFHPN + LA+ D+ + LW+ ++ GH G V+ L + Sbjct: 418 PLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQ-QGNSVRLFTGHRGPVLSLSF 476 Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNS-CYPARRGPQLVCTGSDDGTV 564 + +G L SA D+ + +WD +G K L+GHT + S + G L+ + S D +V Sbjct: 477 SPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSG--LIASASMDNSV 534 Query: 565 KLWDIR 582 ++WDIR Sbjct: 535 RVWDIR 540 Score = 73.9 bits (180), Expect = 3e-13 Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 6/266 (2%) Frame = +1 Query: 271 STLASAGFDR-LILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWD 447 S L +AGFD I LW++ LK E H+ + + T + + Sbjct: 280 SKLLAAGFDNSCIKLWSLRSK-----KLKS------EPHHVDTSRIRLACDTLEEEENEE 328 Query: 448 SETGERVKRLKGHTSFVNSC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQ 621 TG +K L+GH V S + A L C S+D +++ WD+ +Q + Y Sbjct: 329 DNTGTEMKILRGHCGPVYSTRFLADSSGLLSC--SEDMSIRYWDLGSFTNTVLYQGHAYP 386 Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMR---GHADSVTXXXXXXXXXXXXX 792 V V + S SG D ++W + TY +R GH V Sbjct: 387 VWDVDISPFSLYFASGSHDRTARLWSFDR---TYPLRIYAGHLADVDCVKFHPNSNYLAT 443 Query: 793 NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVW 972 + D TVR+W A + V++F G+ +L S+SP+G +A+ D+ + +W Sbjct: 444 GSTDKTVRLWS----AQQGNSVRLFTGH----RGPVLSLSFSPNGKYLASAGEDQRLKLW 495 Query: 973 DYTSRRILYKLPGHAGSINEVAFHPD 1050 D S + +L GH SI +AF PD Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPD 521 Score = 72.4 bits (176), Expect = 7e-13 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 1/165 (0%) Frame = +1 Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393 +L GH V+ P AS DR LW+ + GH V + ++ Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWS-FDRTYPLRIYAGHLADVDCVKFHP 436 Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573 + + L + STDKTV +W ++ G V+ GH V S + G L G +D +KLW Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAG-EDQRLKLW 495 Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLR 705 D+ + + +T + ++ F+ S I S +DN ++VWD+R Sbjct: 496 DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540 >ref|XP_910822.1| PREDICTED: similar to APG16L beta isoform [Mus musculus] Length = 647 Score = 102 bits (254), Expect = 7e-22 Identities = 84/289 (29%), Positives = 128/289 (44%), Gaps = 5/289 (1%) Frame = +1 Query: 190 CSSLQAPIM---LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKG 357 C S Q P +L H EV F PN S LA+ G DRLI LWNV G + TL+G Sbjct: 347 CVSAQIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEG 406 Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537 G++ + ++ GS + +A+ ++ +W + + L GH V + Q V Sbjct: 407 AGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKETLSGHKDKVTAAKFKLTRHQAV 466 Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 717 TGS D TVK WD+ + +T V D IISG D I+ WD R Sbjct: 467 -TGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPHC 523 Query: 718 TYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 897 + VT + DNT++V D+R ++F+ + + Sbjct: 524 IQVIPVQG-RVTSLHLSYDQLHLLSCSRDNTLKVIDLR----ISNIRQVFRADGFKCSSD 578 Query: 898 LLRCSWSPDGSKIAAGSADRFVYVWDYTSRRILYKLPG-HAGSINEVAF 1041 + +SPD S AGS++ +Y+WD + ++ L G H ++N VA+ Sbjct: 579 WTKAVFSPDRSYALAGSSNGDLYIWDVNTGKLETSLQGPHCTAVNAVAW 627 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,486,430 Number of Sequences: 45328 Number of extensions: 1148265 Number of successful extensions: 6412 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4770 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 4195474158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)