BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-008095 (968 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a... 91 5e-20 Alignment gi|NP_999497.1| G-beta like protein [Sus scrofa] 68 4e-13 Alignment gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ... 48 4e-07 >ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus scrofa] Length = 410 Score = 90.5 bits (223), Expect = 5e-20 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 Score = 61.6 bits (148), Expect = 3e-11 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 >ref|NP_999497.1| G-beta like protein [Sus scrofa] Length = 317 Score = 67.8 bits (164), Expect = 4e-13 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 7/180 (3%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V + DG + L+ D TL+LW+ GT R + GH +VL A S DN + SG Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125 Query: 318 DKAVVLWD-VASGQVVRKFRGHAGKVNTVQF--NEEATVILSGSIDSSVRCWDCRSRKPE 488 DK + LW+ + + + H+ V+ V+F N +I+S D V+ W+ + K Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-- 183 Query: 489 PVQTLDEARDG-ISSVKVSDHEVL--AGSVDGRVRRYDLRMGQ-LFSDYVGSPITCTCFS 656 ++T G +++V VS L +G DG+ +DL G+ L++ G I CFS Sbjct: 184 -LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS 242 Score = 65.9 bits (159), Expect = 1e-12 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 12/198 (6%) Frame = +3 Query: 177 LTCGSDKTLKLWNPLR-----GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWD 341 L+ DKT+ +W R G R GH + V D S D SG D + LWD Sbjct: 32 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 91 Query: 342 VASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEAR-D 518 + +G R+F GH V +V F+ + I+SGS D +++ W+ VQ DE+ + Sbjct: 92 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ--DESHSE 149 Query: 519 GISSVKVSDHE----VLAGSVDGRVRRYDLRMGQLFSDYVGSP--ITCTCFSRDGQCTLV 680 +S V+ S + +++ D V+ ++L +L ++++G + S DG Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 209 Query: 681 SSLDSTLRLLDKDTGELL 734 D L D + G+ L Sbjct: 210 GGKDGQAMLWDLNEGKHL 227 >ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa] Length = 493 Score = 47.8 bits (112), Expect = 4e-07 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL---RTYSGHGYEVLD 272 K+L L+ V A+ +N D L+ GS + L +R L R GH EV Sbjct: 262 KKLSMLEGHTARVGALAWNADQ---LSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318 Query: 273 AAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILS---GSI 443 S D+ L SGG D +++W+ +S V+++ H V + ++ +L+ G+ Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378 Query: 444 DSSVRCWDCRSRKPEPVQTLD 506 D +R W+ + +P+Q +D Sbjct: 379 DRCIRFWN--TLTGQPLQCID 397 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 995,035 Number of Sequences: 1040 Number of extensions: 26900 Number of successful extensions: 136 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 86862300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-008095 (968 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] 104 9e-23 Alignment gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [... 99 6e-21 Alignment gi|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isof... 98 8e-21 Alignment gi|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase ... 95 7e-20 Alignment gi|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase ... 94 2e-19 Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso... 90 2e-18 Alignment gi|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isofor... 90 2e-18 Alignment gi|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isofor... 90 2e-18 Alignment gi|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isofor... 90 2e-18 Alignment gi|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isofor... 90 2e-18 >ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus] Length = 441 Score = 104 bits (260), Expect = 9e-23 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 5/270 (1%) Frame = +3 Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317 V N G+ +T D+T KLW+ G L T GH V A +F+N + +G Sbjct: 124 VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVY--AIAFNNPYGDKIATGSF 181 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 DK LW V +G+ FRGH ++ + FN ++T++ +GS+D++ + WD +S + Sbjct: 182 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTL 241 Query: 498 TLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQC 671 T A S S + ++ GS D V ++ G+ +G + I+ F+ D Sbjct: 242 TGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSL 301 Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXX 851 L S+D T +L D G+ + TGH ++ LD C + + S DG + Sbjct: 302 ILTGSMDKTCKLWDAVNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARIFSAA 359 Query: 852 XXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941 + ++P LLTG Sbjct: 360 TRECVTKLEGHEGEISKISFNPQGNRLLTG 389 Score = 93.2 bits (230), Expect = 3e-19 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 5/253 (1%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278 + L TL+ + V A+ FN G+ T DKT KLW+ G T+ GH E++ + Sbjct: 151 EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 210 Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458 + ++ + +G D LWD+ SG+ V GH+ ++ ++ FN I++GS D +V Sbjct: 211 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 270 Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYVG- 629 W+ + + V TL ISS + +L GS+D + +D G+ + G Sbjct: 271 VWEADTGR--KVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGH 328 Query: 630 -SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHV 806 I +CF G+ +S D T R+ T E + + GH+ + K+ + + + Sbjct: 329 DDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS--FNPQGNRL 386 Query: 807 VSCSEDGKVFFWD 845 ++ S D WD Sbjct: 387 LTGSSDKTARIWD 399 Score = 89.0 bits (219), Expect = 5e-18 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 4/234 (1%) Frame = +3 Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332 FN T D T KLW+ G + T +GH E++ + + + + +G D V Sbjct: 211 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 270 Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512 +W+ +G+ V GH ++++ FN + ++IL+GS+D + + WD + K V TL Sbjct: 271 VWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGK--CVATLTGH 328 Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680 D I S + + S DG R + + + G I+ F+ G L Sbjct: 329 DDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLT 388 Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842 S D T R+ D TG+ L GH ++ + C + + +++ S+D W Sbjct: 389 GSSDKTARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGDIIITGSKDNTCRIW 440 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +3 Query: 117 LDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 296 L+ +G + + FN GN LT SDKT ++W+ G L+ GH E+ A ++ Sbjct: 367 LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGD 426 Query: 297 SLCSGGGDKAVVLW 338 + +G D +W Sbjct: 427 IIITGSKDNTCRIW 440 >ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus] Length = 800 Score = 98.6 bits (244), Expect = 6e-21 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%) Frame = +3 Query: 90 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269 E LK L G V F+ D NY L+ D T++LW+ T L Y GH Y V Sbjct: 530 EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 589 Query: 270 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449 D S SGG D+ LW Q +R F GH VN +F+ + + +GS D Sbjct: 590 DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 649 Query: 450 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629 +VR WD + + T + + + + G+ DGRV +D+ G + + G Sbjct: 650 TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709 Query: 630 SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713 T C+ FSRDG+ S+D+T+RL D Sbjct: 710 HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739 Score = 84.3 bits (207), Expect = 1e-16 Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V RF+ + NY T +D+T++LW+ L G +R ++GH + S + L +G Sbjct: 630 VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT 689 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 D V+LWD+ G +V + +GH V +++F+ + ++ SGS+D++VR WD + E V+ Sbjct: 690 DGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA-VKAFEDVE 748 Query: 498 TLD-EARDGISSVKVSDHEVLAGS 566 T D G ++ + E+L G+ Sbjct: 749 TDDFTTATGHINLPENSQELLLGT 772 >ref|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isoform 1 [Bos taurus] Length = 358 Score = 98.2 bits (243), Expect = 8e-21 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 11/308 (3%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227 P A+ P PR L Q + L +G V +F+ +G+ + G D+ + LWN Sbjct: 42 PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99 Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401 T GH V++ + D S L S DK V +WD +G+ V++ +GH VN+ Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159 Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578 ++ +GS D +V+ WD RK +QT ++ + + ++++G +D Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 217 Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734 ++ +DLR +L G +T S +G L +++D+T+R+ D K+ + Sbjct: 218 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 277 Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914 + H ++ L C S + + + S D V+ WD + +H Sbjct: 278 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 337 Query: 915 PTEPCLLT 938 P EP +L+ Sbjct: 338 PDEPIILS 345 Score = 60.8 bits (146), Expect = 1e-09 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 8/112 (7%) Frame = +3 Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290 +V + + +G+Y L+ D T+++W+ + ++ + G H +E +L + S D Sbjct: 238 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 297 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446 S + +G D+ V +WD S +++ K GHAG +N V F+ + +ILS S D Sbjct: 298 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349 >ref|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) [Bos taurus] Length = 577 Score = 95.1 bits (235), Expect = 7e-20 Identities = 44/113 (38%), Positives = 73/113 (64%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V+F+ + NY T +DKT++LW+ +G +R ++GH VL A S ++ L S G Sbjct: 417 VDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGE 476 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476 D+ + LWD+ASG + ++ RGH + ++ F+ ++++I S S+D+SVR WD RS Sbjct: 477 DQRLKLWDLASGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVWDIRS 529 Score = 85.5 bits (210), Expect = 6e-17 Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%) Frame = +3 Query: 108 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287 +K L G V + RF D + L+C D +++ W+ T Y GH Y V D S Sbjct: 323 MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 382 Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 467 + SG D+ LW +R F GH V+ V+F+ + + +GS D +VR W Sbjct: 383 HSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS 442 Query: 468 CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SP 635 +++ V+ R + S+ S + S D R++ +DL G L+ + G Sbjct: 443 --TQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDS 500 Query: 636 ITCTCFSRDGQCTLVSSLDSTLRL-----------LDKDTGELLGEYT 746 IT FS D +S+D+++R+ D + ELLG YT Sbjct: 501 ITSLTFSSDSSLIASASMDNSVRVWDIRSTHCSTPADGSSSELLGVYT 548 Score = 61.6 bits (148), Expect = 9e-10 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 3/210 (1%) Frame = +3 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 GT ++ GH V D+S L S D ++ WD+ S ++GHA V + Sbjct: 320 GTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 379 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584 + + SGS D + R W P + A + + + GS D VR Sbjct: 380 ISPHSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVR 439 Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755 + + G +LF+ + G P+ FS + + + D L+L D +G L E GH Sbjct: 440 LWSTQQGNSVRLFTGHRG-PVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHT 498 Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 + L S + + S S D V WD Sbjct: 499 DSITSL--TFSSDSSLIASASMDNSVRVWD 526 Score = 54.7 bits (130), Expect = 1e-07 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 10/219 (4%) Frame = +3 Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494 D +G ++ RGH G V + +F +++ +LS S D S+R WD S PV Sbjct: 316 DDNAGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 375 Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQC 671 LD + + S D S D R Y LR +F+ ++ + + C F + Sbjct: 376 WDLDISPHSLYFASGSHDRTARLWSFD---RTYPLR---IFAGHL-ADVDCVKFHPNSNY 428 Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXX 851 S D T+RL G + +TGH+ L S ++ S ED ++ WD Sbjct: 429 LATGSTDKTVRLWSTQQGNSVRLFTGHRGP--VLSLAFSPNSKYLASAGEDQRLKLWDLA 486 Query: 852 XXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965 SL + + + M SV+ W Sbjct: 487 SGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVW 525 >ref|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) [Bos taurus] Length = 310 Score = 94.0 bits (232), Expect = 2e-19 Identities = 43/113 (38%), Positives = 72/113 (63%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V+F+ + NY T +DKT++LW+ +G +R ++GH VL A S + L S G Sbjct: 150 VDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 209 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476 D+ + LWD+ASG + ++ RGH + ++ F+ +++++ S S+D+SVR WD RS Sbjct: 210 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 262 Score = 82.0 bits (201), Expect = 6e-16 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 15/229 (6%) Frame = +3 Query: 108 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287 +K L G V + RF D + L+C D +++ W+ T Y GH Y V D S Sbjct: 56 MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 115 Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 467 + S D+ LW +R + GH V+ V+F+ + + +GS D +VR W Sbjct: 116 HSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS 175 Query: 468 CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SP 635 +++ V+ R + S+ S + S D R++ +DL G L+ + G Sbjct: 176 --TQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDN 233 Query: 636 ITCTCFSRDGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749 IT FS D +S+D+++R+ D + EL+G YTG Sbjct: 234 ITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTG 282 Score = 62.4 bits (150), Expect = 5e-10 Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%) Frame = +3 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 GT ++ GH V D+S L S D ++ WD+ S ++GHA V + Sbjct: 53 GTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 112 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584 + + S S D + R W P + A + + + GS D VR Sbjct: 113 ISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 172 Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755 + + G +LF+ + G P+ FS +G+ + D L+L D +G L E GH Sbjct: 173 LWSTQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 231 Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 + L S + V S S D V WD Sbjct: 232 DNITSL--TFSPDSSLVASASMDNSVRVWD 259 Score = 54.7 bits (130), Expect = 1e-07 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Frame = +3 Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308 +G V ++ F+ +G Y + G D+ LKLW+ GTL + GH + S D+S + S Sbjct: 189 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVAS 248 Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437 D +V +WD+ +S ++V + G V +VQF ++++G Sbjct: 249 ASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTG 302 >ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) [Bos taurus] Length = 410 Score = 90.1 bits (222), Expect = 2e-18 Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 Score = 61.6 bits (148), Expect = 9e-10 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 >ref|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 6 [Bos taurus] Length = 706 Score = 90.1 bits (222), Expect = 2e-18 Identities = 66/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 411 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 466 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 467 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 524 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 525 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 582 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G N+ CL V++ S+ Sbjct: 583 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 641 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 642 DGTVKLWD 649 Score = 84.3 bits (207), Expect = 1e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 390 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 447 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 448 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 500 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 501 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 560 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 561 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 606 Score = 81.6 bits (200), Expect = 8e-16 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 479 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 536 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 537 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 592 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 593 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 650 Query: 717 DTGELL 734 TGE + Sbjct: 651 KTGEFI 656 Score = 80.1 bits (196), Expect = 2e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 373 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 431 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 432 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 487 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 488 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 547 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 548 F----DGIHVVSGSLDTSIRVWD 566 >ref|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 5 [Bos taurus] Length = 589 Score = 90.1 bits (222), Expect = 2e-18 Identities = 66/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 294 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 349 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 350 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 407 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 408 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 465 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G N+ CL V++ S+ Sbjct: 466 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 524 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 525 DGTVKLWD 532 Score = 84.3 bits (207), Expect = 1e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 330 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 331 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 383 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 384 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 443 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 444 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 489 Score = 81.6 bits (200), Expect = 8e-16 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 362 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 419 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 420 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 475 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 476 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 533 Query: 717 DTGELL 734 TGE + Sbjct: 534 KTGEFI 539 Score = 80.1 bits (196), Expect = 2e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 256 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 314 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 315 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 370 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 371 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 430 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 431 F----DGIHVVSGSLDTSIRVWD 449 >ref|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 4 [Bos taurus] Length = 629 Score = 90.1 bits (222), Expect = 2e-18 Identities = 66/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 334 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 389 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 390 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 447 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 448 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 505 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G N+ CL V++ S+ Sbjct: 506 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 564 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 565 DGTVKLWD 572 Score = 84.3 bits (207), Expect = 1e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 370 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 371 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 423 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 424 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 483 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 484 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 529 Score = 81.6 bits (200), Expect = 8e-16 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 402 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 459 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 460 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 515 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 516 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 573 Query: 717 DTGELL 734 TGE + Sbjct: 574 KTGEFI 579 Score = 80.1 bits (196), Expect = 2e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 296 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 354 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 355 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 410 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 411 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 470 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 471 F----DGIHVVSGSLDTSIRVWD 489 >ref|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 1 [Bos taurus] Length = 706 Score = 90.1 bits (222), Expect = 2e-18 Identities = 66/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 411 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 466 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 467 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 524 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 525 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 582 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G N+ CL V++ S+ Sbjct: 583 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 641 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 642 DGTVKLWD 649 Score = 84.3 bits (207), Expect = 1e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 390 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 447 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 448 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 500 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 501 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 560 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 561 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 606 Score = 81.6 bits (200), Expect = 8e-16 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 479 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 536 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 537 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 592 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 593 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 650 Query: 717 DTGELL 734 TGE + Sbjct: 651 KTGEFI 656 Score = 80.1 bits (196), Expect = 2e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 373 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 431 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 432 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 487 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 488 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 547 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 548 F----DGIHVVSGSLDTSIRVWD 566 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,536,260 Number of Sequences: 33508 Number of extensions: 1072360 Number of successful extensions: 6952 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6176 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 2792858200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-008095 (968 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_542047.1| PREDICTED: similar to mitogen-activated protein... 583 e-167 Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 144 2e-34 Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] 102 7e-22 Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 98 1e-20 Alignment gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ... 93 3e-19 Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 91 1e-18 Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 91 2e-18 Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 91 2e-18 Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 91 2e-18 Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 90 3e-18 >ref|XP_542047.1| PREDICTED: similar to mitogen-activated protein kinase organizer 1 [Canis familiaris] Length = 315 Score = 583 bits (1504), Expect = e-167 Identities = 279/304 (91%), Positives = 284/304 (93%) Frame = +3 Query: 57 MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236 MAFPEPKPRGPELPQKR+KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL Sbjct: 1 MAFPEPKPRGPELPQKRVKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE Sbjct: 61 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 120 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 ATVILSGSIDSS+RCWDCRSR+PEPVQTLDEARDGISSVKVSDHEVL+GSVDGRVRRYDL Sbjct: 121 ATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGISSVKVSDHEVLSGSVDGRVRRYDL 180 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD Sbjct: 181 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 240 Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956 CCLSERDTHVVSCSEDGKV+FWD QSL YHPTEPCLLT MGGSV Sbjct: 241 CCLSERDTHVVSCSEDGKVYFWDLVEGALALALPVGPGVVQSLAYHPTEPCLLTAMGGSV 300 Query: 957 QCWR 968 CWR Sbjct: 301 HCWR 304 >ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris] Length = 334 Score = 144 bits (362), Expect = 2e-34 Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 10/302 (3%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224 PS+ A + KP P P LK TL AV +V+F+ +G + + +DK +K+W Sbjct: 19 PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 G +T SGH + D A S D++ L S DK + +WDV+SG+ ++ +GH+ V Sbjct: 77 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRK--------PEPVQTLDEARDGISSVKVSDHEVLA 560 FN ++ +I+SGS D SVR WD ++ K +PV + RDG S + S ++ L Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLC 195 Query: 561 GSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGE 740 G R +L D P++ FS +G+ L ++LD+TL+L D G+ L Sbjct: 196 GKTGNAAS----RCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251 Query: 741 YTGHKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHP 917 YTGHKN++Y + S +VS SED V+ W+ S HP Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311 Query: 918 TE 923 TE Sbjct: 312 TE 313 Score = 65.9 bits (159), Expect = 6e-11 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Frame = +3 Query: 117 LDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 296 LD V V+F+ +G Y L D TLKLW+ +G L+TY+GH E +F + Sbjct: 210 LDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269 Query: 297 S---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DSSVRC 461 + SG D V +W++ + ++V+K +GH V + + +I S ++ D +++ Sbjct: 270 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 329 Query: 462 W--DC 470 W DC Sbjct: 330 WKSDC 334 >ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris] Length = 415 Score = 102 bits (253), Expect = 7e-22 Identities = 76/272 (27%), Positives = 121/272 (44%), Gaps = 7/272 (2%) Frame = +3 Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317 V N G+ +T D+T KLW+ G L T GH V A +F+N + +G Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVY--AIAFNNPYGDKIATGSF 155 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 DK LW V +G+ FRGH ++ + FN ++T++ +GS+D++ + WD +S E V Sbjct: 156 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQS--GEEVF 213 Query: 498 TL-DEARDGIS-SVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665 TL + + IS S S ++ GS D V ++ G+ +G + I+ F+ D Sbjct: 214 TLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDC 273 Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 L S+D T L D G+ + TGH ++ LD C + + S DG + Sbjct: 274 SLILTGSMDKTCMLWDASNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARVFS 331 Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941 + ++P LLTG Sbjct: 332 AATRKCLTKLEGHEGEISKISFNPQGNRLLTG 363 Score = 93.2 bits (230), Expect = 3e-19 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 5/253 (1%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278 + L TL+ + V A+ FN G+ T DKT KLW+ G T+ GH E++ + Sbjct: 125 EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 184 Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458 + ++ + +G D LWD+ SG+ V RGH+ ++ ++ FN I++GS D +V Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244 Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYVG- 629 W+ + + V TL ISS + +L GS+D +D G+ + G Sbjct: 245 VWEADTGR--KVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGH 302 Query: 630 -SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHV 806 I +CF G+ +S D T R+ T + L + GH+ + K+ + + + Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS--FNPQGNRL 360 Query: 807 VSCSEDGKVFFWD 845 ++ S D WD Sbjct: 361 LTGSADETARIWD 373 Score = 87.8 bits (216), Expect = 1e-17 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 4/234 (1%) Frame = +3 Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332 FN T D T KLW+ G + T GH E++ + + + +G D V Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244 Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512 +W+ +G+ V GH ++++ FN + ++IL+GS+D + WD + K V TL Sbjct: 245 VWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKC--VATLTGH 302 Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680 D I S + + S DG R + + + G I+ F+ G L Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLT 362 Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842 S D T R+ D TG+ L GH ++ + C + + +++ S+D W Sbjct: 363 GSADETARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGDIIITGSKDNTCRIW 414 Score = 73.2 bits (178), Expect = 4e-13 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 + + FN D + LT DKT LW+ G + T +GH E+LD+ + + + Sbjct: 264 ISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 D ++ A+ + + K GH G+++ + FN + +L+GS D + R WD ++ + +Q Sbjct: 324 DGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQT--GQCLQ 381 Query: 498 TLDEARDGISS--VKVSDHEVLAGSVDGRVR 584 L+ D I S ++ GS D R Sbjct: 382 VLEGHTDEIFSCAFNYKGDIIITGSKDNTCR 412 >ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris] Length = 358 Score = 98.2 bits (243), Expect = 1e-20 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 11/308 (3%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227 P A+ P PR L Q + L +G V +F+ +G+ + G D+ + LWN Sbjct: 42 PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99 Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401 T GH V++ + D S L S DK V +WD +G+ V++ +GH VN+ Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159 Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578 ++ +GS D +V+ WD RK +QT ++ + + ++++G +D Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 217 Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734 ++ +DLR +L G +T S +G L +++D+T+R+ D K+ + Sbjct: 218 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 277 Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914 + H ++ L C S + + + S D V+ WD + +H Sbjct: 278 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 337 Query: 915 PTEPCLLT 938 P EP +L+ Sbjct: 338 PDEPIILS 345 Score = 60.8 bits (146), Expect = 2e-09 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 8/112 (7%) Frame = +3 Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290 +V + + +G+Y L+ D T+++W+ + ++ + G H +E +L + S D Sbjct: 238 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 297 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446 S + +G D+ V +WD S +++ K GHAG +N V F+ + +ILS S D Sbjct: 298 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349 >ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF associated factor 65 beta) (PAF65-beta) [Canis familiaris] Length = 589 Score = 93.2 bits (230), Expect = 3e-19 Identities = 43/113 (38%), Positives = 72/113 (63%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V+F+ + NY T +DKT++LW+ +G +R ++GH VL A S + L S G Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 488 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476 D+ + LWD+ASG + ++ RGH + ++ F+ ++++I S S+D+SVR WD R+ Sbjct: 489 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541 Score = 85.1 bits (209), Expect = 9e-17 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%) Frame = +3 Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311 G V + RF D + L+C D +++ W+ T Y GH Y V D S + SG Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASG 402 Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491 D+ LW +R + GH V+ V+F+ + + +GS D +VR W +++ Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460 Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659 V+ R + S+ S + S D R++ +DL G L+ + G IT FS Sbjct: 461 VRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSP 520 Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749 D +S+D+++R+ D +GEL+G YTG Sbjct: 521 DSSLIASASMDNSVRVWDIRNTYCSTPADGSSGELVGVYTG 561 Score = 63.2 bits (152), Expect = 4e-10 Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 3/210 (1%) Frame = +3 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 GT ++ GH V D+S L S D ++ WD+ S ++GHA V + Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 391 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584 + + SGS D + R W P + A + + + GS D VR Sbjct: 392 ISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451 Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755 + + G +LF+ + G P+ FS +G+ + D L+L D +G L E GH Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510 Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 + L S + + S S D V WD Sbjct: 511 DNITSL--TFSPDSSLIASASMDNSVRVWD 538 Score = 57.4 bits (137), Expect = 2e-08 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Frame = +3 Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308 +G V ++ F+ +G Y + G D+ LKLW+ GTL + GH + S D+S + S Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIAS 527 Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437 D +V +WD+ +SG++V + G V +VQF ++++G Sbjct: 528 ASMDNSVRVWDIRNTYCSTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTG 581 Score = 55.5 bits (132), Expect = 8e-08 Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 12/221 (5%) Frame = +3 Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494 D +G ++ RGH G V + +F +++ +LS S D S+R WD S PV Sbjct: 328 DDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 387 Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665 LD + + S D S D R Y LR+ Y G + + C F + Sbjct: 388 WDLDISPYSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNS 438 Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 S D T+RL G + +TGH+ L S ++ S ED ++ WD Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGP--VLSLAFSPNGKYLASAGEDQRLKLWD 496 Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965 SL + P + + M SV+ W Sbjct: 497 LASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVW 537 >ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 5 [Canis familiaris] Length = 415 Score = 91.3 bits (225), Expect = 1e-18 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 1/286 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTC 650 +++ ++ +HE + + + + +P T Sbjct: 264 ATKE--------------CKAELREHEHVVECISWAPESSYSSISEATGSEEENPRTKKS 309 Query: 651 FSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGK 830 + G L S D T+++ D TG L GH N + ++SC++D Sbjct: 310 -GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKT 366 Query: 831 VFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 367 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 412 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 313 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 372 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 373 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 415 Score = 59.7 bits (143), Expect = 4e-09 Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 6/252 (2%) Frame = +3 Query: 108 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287 ++T+ V +V +G++ ++ DKT+K+W G ++T++GH V + Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244 Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVI----LSGSIDSSV 455 D + + S D+ V +W VA+ + + R H V + + E++ +GS + + Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEENP 304 Query: 456 RCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSP 635 R +S KP P +L+GS D ++ +D+ G VG Sbjct: 305 R--TKKSGKPGPF-------------------LLSGSRDKTIKMWDVSTGMCLMTLVGHD 343 Query: 636 --ITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVV 809 + F G+ L + D TLR+ D + H++ LD + +VV Sbjct: 344 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD--FHKTAPYVV 401 Query: 810 SCSEDGKVFFWD 845 + S D V W+ Sbjct: 402 TGSVDQTVKVWE 413 >ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 1 [Canis familiaris] Length = 372 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 106 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 165 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 166 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 225 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 226 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 269 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 270 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 322 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 323 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 369 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 270 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 329 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 330 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 372 >ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 2 [Canis familiaris] Length = 410 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 >ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 3 [Canis familiaris] Length = 345 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 79 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 138 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 139 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 198 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 199 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 242 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 243 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 295 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 296 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 342 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 243 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 302 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 303 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 345 >ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis familiaris] Length = 589 Score = 90.1 bits (222), Expect = 3e-18 Identities = 66/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 294 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 349 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 350 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 407 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 408 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 465 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G N+ CL V++ S+ Sbjct: 466 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 524 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 525 DGTVKLWD 532 Score = 84.3 bits (207), Expect = 2e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 330 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 331 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 383 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 384 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 443 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 444 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 489 Score = 81.6 bits (200), Expect = 1e-15 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 362 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 419 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 420 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 475 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 476 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 533 Query: 717 DTGELL 734 TGE + Sbjct: 534 KTGEFI 539 Score = 80.1 bits (196), Expect = 3e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 256 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 314 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 315 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 370 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 371 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 430 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 431 F----DGIHVVSGSLDTSIRVWD 449 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,817,519 Number of Sequences: 33732 Number of extensions: 1244986 Number of successful extensions: 8116 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7186 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3458485011 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-008095 (968 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_115708.1| mitogen-activated protein kinase organizer 1 [H... 583 e-167 Alignment gi|NP_438172.1| WD repeat domain 5 [Homo sapiens] 149 5e-36 Alignment gi|NP_060058.1| WD repeat domain 5 [Homo sapiens] 149 5e-36 Alignment gi|NP_061942.2| WD repeat domain 5B [Homo sapiens] 147 1e-35 Alignment gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] 104 1e-22 Alignment gi|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo s... 99 7e-21 Alignment gi|NP_008882.2| TBP-associated factor 5 [Homo sapiens] 99 7e-21 Alignment gi|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo ... 92 7e-19 Alignment gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo... 92 9e-19 Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase, iso... 91 2e-18 >ref|NP_115708.1| mitogen-activated protein kinase organizer 1 [Homo sapiens] Length = 315 Score = 583 bits (1504), Expect = e-167 Identities = 279/304 (91%), Positives = 283/304 (93%) Frame = +3 Query: 57 MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236 MAFPEPKPR PELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL Sbjct: 1 MAFPEPKPRPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE Sbjct: 61 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 120 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 ATVILSGSIDSS+RCWDCRSR+PEPVQTLDEARDG+SSVKVSDHE+LAGSVDGRVRRYDL Sbjct: 121 ATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDL 180 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEY GHKNQEYKLD Sbjct: 181 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLD 240 Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956 CCLSERDTHVVSCSEDGKVFFWD QSL YHPTEPCLLT MGGSV Sbjct: 241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQSLAYHPTEPCLLTAMGGSV 300 Query: 957 QCWR 968 QCWR Sbjct: 301 QCWR 304 >ref|NP_438172.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 149 bits (375), Expect = 5e-36 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224 PS+ A + KP P P LK TL AV +V+F+ +G + + +DK +K+W Sbjct: 19 PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 G +T SGH + D A S D++ L S DK + +WDV+SG+ ++ +GH+ V Sbjct: 77 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578 FN ++ +I+SGS D SVR WD ++ K ++TL D +S+V + +++ S DG Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194 Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749 R +D GQ + P++ FS +G+ L ++LD+TL+L D G+ L YTG Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254 Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923 HKN++Y + S +VS SED V+ W+ S HPTE Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313 Score = 66.6 bits (161), Expect = 3e-11 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Frame = +3 Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284 LKTL D V V+F+ +G Y L D TLKLW+ +G L+TY+GH E + Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265 Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449 F + + SG D V +W++ + ++V+K +GH V + + +I S ++ D Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325 Query: 450 SVRCW--DC 470 +++ W DC Sbjct: 326 TIKLWKSDC 334 >ref|NP_060058.1| WD repeat domain 5 [Homo sapiens] Length = 334 Score = 149 bits (375), Expect = 5e-36 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224 PS+ A + KP P P LK TL AV +V+F+ +G + + +DK +K+W Sbjct: 19 PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 G +T SGH + D A S D++ L S DK + +WDV+SG+ ++ +GH+ V Sbjct: 77 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578 FN ++ +I+SGS D SVR WD ++ K ++TL D +S+V + +++ S DG Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194 Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749 R +D GQ + P++ FS +G+ L ++LD+TL+L D G+ L YTG Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254 Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923 HKN++Y + S +VS SED V+ W+ S HPTE Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313 Score = 66.6 bits (161), Expect = 3e-11 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Frame = +3 Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284 LKTL D V V+F+ +G Y L D TLKLW+ +G L+TY+GH E + Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265 Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449 F + + SG D V +W++ + ++V+K +GH V + + +I S ++ D Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325 Query: 450 SVRCW--DC 470 +++ W DC Sbjct: 326 TIKLWKSDC 334 >ref|NP_061942.2| WD repeat domain 5B [Homo sapiens] Length = 330 Score = 147 bits (372), Expect = 1e-35 Identities = 95/286 (33%), Positives = 144/286 (50%), Gaps = 7/286 (2%) Frame = +3 Query: 87 PELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYE 263 PE P LK TL AV +V+F+ +G + + +D+ + +W G +T GH E Sbjct: 26 PENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLE 85 Query: 264 VLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI 443 + D A S D+S L S DK + LWDV SG+ ++ +GH+ V FN + +I+SGS Sbjct: 86 ISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSF 145 Query: 444 DSSVRCWDCRSRKPEPVQTLDEARDGISSV--KVSDHEVLAGSVDGRVRRYDLRMGQLFS 617 D +V+ W+ ++ K ++TL D +S+V S +++GS DG R +D GQ Sbjct: 146 DETVKIWEVKTGK--CLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLK 203 Query: 618 DYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLS 788 V P++ FS +G+ L ++LD+TL+L D G L YTGHKN++Y + S Sbjct: 204 TLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFS 263 Query: 789 -ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923 +VS SED V+ W+ S HPTE Sbjct: 264 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTE 309 Score = 68.2 bits (165), Expect = 1e-11 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Frame = +3 Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284 LKTL D V V+F+ +G Y LT D TLKLW+ RG L+TY+GH E + Sbjct: 202 LKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFAN 261 Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449 F + + SG D V +W++ + ++V+K +GH V + + +I S ++ D Sbjct: 262 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDK 321 Query: 450 SVRCW 464 +++ W Sbjct: 322 TIKLW 326 >ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens] Length = 415 Score = 104 bits (259), Expect = 1e-22 Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 7/272 (2%) Frame = +3 Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317 V N G+ +T D+T KLW+ G L T GH V A +F+N + +G Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVY--AIAFNNPYGDKIATGSF 155 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 DK LW V +G+ FRGH ++ + FN ++T++ +GS+D++ + WD ++ E V Sbjct: 156 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQN--GEEVY 213 Query: 498 TL-DEARDGIS-SVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665 TL + + IS S S ++ GS D V +D G+ + +G + I+ F+ D Sbjct: 214 TLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDC 273 Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 L S+D T +L D G+ + TGH ++ LD C + + S DG + Sbjct: 274 SLILTGSMDKTCKLWDATNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARIFS 331 Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941 + ++P LLTG Sbjct: 332 AATRKCIAKLEGHEGEISKISFNPQGNHLLTG 363 Score = 100 bits (250), Expect = 1e-21 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 3/251 (1%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278 + L TL+ + V A+ FN G+ T DKT KLW+ G T+ GH E++ + Sbjct: 125 EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 184 Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458 + ++ + +G D LWD+ +G+ V RGH+ ++ ++ FN I++GS D +V Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244 Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--S 632 WD + + + A +S +L GS+D + +D G+ + G Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD 304 Query: 633 PITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVS 812 I +CF G+ +S D T R+ T + + + GH+ + K+ + + H+++ Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS--FNPQGNHLLT 362 Query: 813 CSEDGKVFFWD 845 S D WD Sbjct: 363 GSSDKTARIWD 373 Score = 94.0 bits (232), Expect = 2e-19 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 4/234 (1%) Frame = +3 Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332 FN T D T KLW+ G + T GH E++ + + + +G D VV Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244 Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512 +WD +G+ V GH ++++ FN + ++IL+GS+D + + WD + K V TL Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGK--CVATLTGH 302 Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680 D I S + + S DG R + + + G I+ F+ G L Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLT 362 Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842 S D T R+ D TG+ L GH ++ + C + + V++ S+D W Sbjct: 363 GSSDKTARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGNIVITGSKDNTCRIW 414 Score = 78.2 bits (191), Expect = 1e-14 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 + + FN D + LT DKT KLW+ G + T +GH E+LD+ + + + Sbjct: 264 ISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497 D ++ A+ + + K GH G+++ + FN + +L+GS D + R WD ++ + +Q Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQT--GQCLQ 381 Query: 498 TLDEARDGISS--VKVSDHEVLAGSVDGRVR 584 L+ D I S + V+ GS D R Sbjct: 382 VLEGHTDEIFSCAFNYKGNIVITGSKDNTCR 412 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = +3 Query: 99 QKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278 +K + L+ +G + + FN GN+ LT SDKT ++W+ G L+ GH E+ A Sbjct: 335 RKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCA 394 Query: 279 GSFDNSSLCSGGGDKAVVLW 338 ++ + + +G D +W Sbjct: 395 FNYKGNIVITGSKDNTCRIW 414 >ref|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo sapiens] Length = 357 Score = 98.6 bits (244), Expect = 7e-21 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 11/308 (3%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227 P A+ P PR L Q + L +G V +F+ +G+ + G D+ + LWN Sbjct: 41 PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 98 Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401 T GH V++ + D S L S DK V +WD +G+ V++ +GH VN+ Sbjct: 99 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 158 Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578 + ++ +GS D +V+ WD RK +QT ++ + + ++++G +D Sbjct: 159 PARKSPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 216 Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734 ++ +DLR +L G +T S +G L +++D+T+R+ D K+ + Sbjct: 217 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 276 Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914 + H ++ L C S + + + S D V+ WD + +H Sbjct: 277 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 336 Query: 915 PTEPCLLT 938 P EP +++ Sbjct: 337 PDEPIIIS 344 Score = 60.1 bits (144), Expect = 3e-09 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 8/112 (7%) Frame = +3 Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290 +V + + +G+Y L+ D T+++W+ + ++ + G H +E +L + S D Sbjct: 237 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 296 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446 S + +G D+ V +WD S +++ K GHAG +N V F+ + +I+S S D Sbjct: 297 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSD 348 >ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens] Length = 800 Score = 98.6 bits (244), Expect = 7e-21 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%) Frame = +3 Query: 90 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269 E LK L G V F+ D NY L+ D T++LW+ T L Y GH Y V Sbjct: 530 EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 589 Query: 270 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449 D S SGG D+ LW Q +R F GH VN +F+ + + +GS D Sbjct: 590 DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 649 Query: 450 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629 +VR WD + + T + + + + G+ DGRV +D+ G + + G Sbjct: 650 TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709 Query: 630 SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713 T C+ FSRDG+ S+D+T+RL D Sbjct: 710 HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739 >ref|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo sapiens] Length = 589 Score = 92.0 bits (227), Expect = 7e-19 Identities = 43/113 (38%), Positives = 71/113 (62%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V+F+ + NY T +DKT++LW+ +G +R ++GH VL A S + L S G Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 488 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476 D+ + LWD+ASG + ++ RGH + ++ F+ ++ +I S S+D+SVR WD R+ Sbjct: 489 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541 Score = 82.0 bits (201), Expect = 7e-16 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 15/221 (6%) Frame = +3 Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311 G V + RF D + L+C D +++ W+ T Y GH Y V D S + SG Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASG 402 Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491 D+ LW +R + GH V+ V+F+ + + +GS D +VR W +++ Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460 Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659 V+ R + S+ S + S D R++ +DL G L+ + G IT FS Sbjct: 461 VRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSP 520 Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749 D +S+D+++R+ D + EL+G YTG Sbjct: 521 DSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTG 561 Score = 62.0 bits (149), Expect = 7e-10 Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%) Frame = +3 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 GT ++ GH V D+S L S D ++ WD+ S ++GHA V + Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 391 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584 + + SGS D + R W P + A + + + GS D VR Sbjct: 392 ISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451 Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755 + + G +LF+ + G P+ FS +G+ + D L+L D +G L E GH Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510 Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 + L S + S S D V WD Sbjct: 511 DNITSL--TFSPDSGLIASASMDNSVRVWD 538 Score = 55.1 bits (131), Expect = 9e-08 Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 12/221 (5%) Frame = +3 Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494 D +G ++ RGH G V + +F +++ +LS S D S+R WD S PV Sbjct: 328 DDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 387 Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665 LD + + S D S D R Y LR+ Y G + + C F + Sbjct: 388 WDLDISPYSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNS 438 Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 S D T+RL G + +TGH+ L S ++ S ED ++ WD Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGP--VLSLAFSPNGKYLASAGEDQRLKLWD 496 Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965 SL + P + + M SV+ W Sbjct: 497 LASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVW 537 Score = 53.5 bits (127), Expect = 3e-07 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 11/114 (9%) Frame = +3 Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308 +G V ++ F+ +G Y + G D+ LKLW+ GTL + GH + S D+ + S Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIAS 527 Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437 D +V +WD+ +S ++V + G V +VQF ++++G Sbjct: 528 ASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTG 581 >ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens] Length = 315 Score = 91.7 bits (226), Expect = 9e-19 Identities = 62/207 (29%), Positives = 86/207 (41%) Frame = +3 Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311 G V+ RF+ DG+ + D T++LW+ R LR GH V + S D+ L SG Sbjct: 64 GPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASG 123 Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491 G DK V+LWDV SGQ++R GH + + F+ + +GS DS+VR WD R P Sbjct: 124 GWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTP-- 181 Query: 492 VQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQC 671 H+ L G I+C C+S G Sbjct: 182 ---------------AVSHQALEGH--------------------SGNISCLCYSASG-L 205 Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGH 752 S D T+ + T LL + GH Sbjct: 206 LASGSWDKTIHIWKPTTSSLLIQLKGH 232 Score = 51.2 bits (121), Expect = 1e-06 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGS-DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287 + L+ G + + ++ G L GS DKT+ +W P +LL GH V A S Sbjct: 186 QALEGHSGNISCLCYSASG--LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243 Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFR-GHAGKVNTVQFNEEATVILSGSIDSSVRCW 464 D L S G + V +WD +G+ + + G +T F + +++SG+ D + R Sbjct: 244 DELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQI 303 Query: 465 DCRSRKPEPVQT 500 S+ P QT Sbjct: 304 SRTSKSPRDPQT 315 Score = 49.7 bits (117), Expect = 4e-06 Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Frame = +3 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTG 725 +L GS DG V ++ R GQL G P+ FS DG +S D T+RL D Sbjct: 36 LLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARA 95 Query: 726 ELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSL 905 + L GH+ + S + S D +V WD QS Sbjct: 96 KCLRVLKGHQRSVETVS--FSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSS 153 Query: 906 GYHPTEPCLLTGMGGS-VQCW 965 + PT CL TG S V+ W Sbjct: 154 DFSPTVNCLATGSWDSTVRIW 174 >ref|NP_000421.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) [Homo sapiens] Length = 410 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,960,767 Number of Sequences: 39411 Number of extensions: 1280521 Number of successful extensions: 8155 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7425 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 3026015740 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611C-008095 (968 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_080675.2| mitogen-activated protein kinase organizer 1 [M... 568 e-162 Alignment gi|NP_543124.1| WD repeat domain 5 [Mus musculus] 149 6e-36 Alignment gi|NP_081389.1| WD repeat domain 5B [Mus musculus] 146 3e-35 Alignment gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei... 99 9e-21 Alignment gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate... 92 8e-19 Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso... 91 2e-18 Alignment gi|XP_987745.1| PREDICTED: similar to platelet-activating facto... 91 2e-18 Alignment gi|NP_536353.2| F-box and WD-40 domain protein 7, archipelago h... 89 7e-18 Alignment gi|NP_034443.1| guanine nucleotide-binding protein, beta-5 subu... 89 9e-18 Alignment gi|NP_619733.1| guanine nucleotide-binding protein, beta-5 subu... 89 9e-18 >ref|NP_080675.2| mitogen-activated protein kinase organizer 1 [Mus musculus] Length = 315 Score = 568 bits (1465), Expect = e-162 Identities = 271/304 (89%), Positives = 278/304 (91%) Frame = +3 Query: 57 MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236 MAFPEPKPR PELPQKR+KTLDC QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL Sbjct: 1 MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 RTYSGHGYEVLDAAGSFDNS LCSGGGDK VVLWDVA+GQVVRKFRGHAGKVNTVQFNEE Sbjct: 61 RTYSGHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEE 120 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE+LAGSVDGRVRRYDL Sbjct: 121 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL 180 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 RMGQ+ SDYVGSPITCTCFSRDGQCTL+SSLDSTLRLLDKDTGELLGEY GHKNQ+YKLD Sbjct: 181 RMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLD 240 Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956 CCLSERDTHVVSCSEDGKVFFWD QSL YHPTEPCLLT MGGS+ Sbjct: 241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAMGGSI 300 Query: 957 QCWR 968 Q WR Sbjct: 301 QYWR 304 >ref|NP_543124.1| WD repeat domain 5 [Mus musculus] Length = 334 Score = 149 bits (375), Expect = 6e-36 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%) Frame = +3 Query: 48 PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224 PS+ A + KP P P LK TL AV +V+F+ +G + + +DK +K+W Sbjct: 19 PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 G +T SGH + D A S D++ L S DK + +WDV+SG+ ++ +GH+ V Sbjct: 77 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578 FN ++ +I+SGS D SVR WD ++ K ++TL D +S+V + +++ S DG Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194 Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749 R +D GQ + P++ FS +G+ L ++LD+TL+L D G+ L YTG Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254 Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923 HKN++Y + S +VS SED V+ W+ S HPTE Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313 Score = 66.6 bits (161), Expect = 4e-11 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Frame = +3 Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284 LKTL D V V+F+ +G Y L D TLKLW+ +G L+TY+GH E + Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265 Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449 F + + SG D V +W++ + ++V+K +GH V + + +I S ++ D Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325 Query: 450 SVRCW--DC 470 +++ W DC Sbjct: 326 TIKLWKSDC 334 >ref|NP_081389.1| WD repeat domain 5B [Mus musculus] Length = 328 Score = 146 bits (369), Expect = 3e-35 Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 11/293 (3%) Frame = +3 Query: 78 PRGPELPQK-----RLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRT 242 PR E PQK RL TL A+ +V+F+ +G + + +D + +W G +T Sbjct: 18 PRREEEPQKPNYALRL-TLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKT 76 Query: 243 YSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEAT 422 GH E+ D A S D+S L S DK + +WD+ SG+ ++ +GH+ V FN + Sbjct: 77 LYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSN 136 Query: 423 VILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE--VLAGSVDGRVRRYDL 596 +I+SGS D SV+ W+ ++ K ++TL D IS+V + + +++GS DG R +D Sbjct: 137 LIVSGSFDESVKIWEVKTGK--CLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDA 194 Query: 597 RMGQ---LFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEY 767 GQ +D P++ FS +G+ L ++LD+TL+L D G L YTGHKN++Y Sbjct: 195 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY 254 Query: 768 KLDCCLSERDTH-VVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923 L S VVS SED V+ W+ S HPT+ Sbjct: 255 CLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK 307 Score = 70.5 bits (171), Expect = 3e-12 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 8/129 (6%) Frame = +3 Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284 L+TL D G V V+F+ +G Y LT D TLKLW+ RG L+TY+GH E S Sbjct: 200 LRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFAS 259 Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449 F + + SG D V +W++ + ++V++ +GH V + + +I S ++ D Sbjct: 260 FSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDK 319 Query: 450 SVRCW--DC 470 +++ W DC Sbjct: 320 TIKVWSSDC 328 >ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa [Mus musculus] Length = 801 Score = 98.6 bits (244), Expect = 9e-21 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%) Frame = +3 Query: 90 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269 E LK L G V F+ D NY L+ D T++LW+ T L Y GH Y V Sbjct: 531 EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 590 Query: 270 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449 D S SGG D+ LW Q +R F GH VN +F+ + + +GS D Sbjct: 591 DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 650 Query: 450 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629 +VR WD + + T + + + + G+ DGRV +D+ G + + G Sbjct: 651 TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 710 Query: 630 SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713 T C+ FSRDG+ S+D+T+RL D Sbjct: 711 HTDTVCSLRFSRDGEILASGSMDNTVRLWD 740 >ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Mus musculus] Length = 589 Score = 92.0 bits (227), Expect = 8e-19 Identities = 43/113 (38%), Positives = 71/113 (62%) Frame = +3 Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317 V V+F+ + NY T +DKT++LW+ +G +R ++GH VL + S + L S G Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE 488 Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476 D+ + LWD+ASG + ++ RGH + ++ F+ ++ +I S S+D+SVR WD RS Sbjct: 489 DQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541 Score = 87.0 bits (214), Expect = 3e-17 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%) Frame = +3 Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311 G V + RF D + L+C D +++ W+ T Y GH Y V D S + SG Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASG 402 Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491 D+ LW +R + GH V+ V+F+ + + +GS D +VR W +++ Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460 Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659 V+ R + S+ S + S D R++ +DL G LF + G IT FS Sbjct: 461 VRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSP 520 Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749 D +S+D+++R+ D +GEL+G YTG Sbjct: 521 DSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTG 561 Score = 63.2 bits (152), Expect = 4e-10 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%) Frame = +3 Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404 GT ++ GH V D+S L S D ++ WD+ S ++GHA V V Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVD 391 Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584 + + SGS D + R W P + A + + + GS D VR Sbjct: 392 ISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451 Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755 + + G +LF+ + G P+ FS +G+ + D L+L D +G L E GH Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHT 510 Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 + L S + S S D V WD Sbjct: 511 DSITSL--AFSPDSGLIASASMDNSVRVWD 538 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Frame = +3 Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308 +G V ++ F+ +G Y + G D+ LKLW+ GTL + GH + A S D+ + S Sbjct: 468 RGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIAS 527 Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437 D +V +WD+ +SG++V + G V +VQF ++++G Sbjct: 528 ASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTG 581 Score = 54.7 bits (130), Expect = 1e-07 Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 12/218 (5%) Frame = +3 Query: 348 SGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPVQTL 503 +G ++ RGH G V + +F +++ +LS S D S+R WD S PV + Sbjct: 331 TGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDV 390 Query: 504 DEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCT 674 D + + S D S D R Y LR+ Y G + + C F + Sbjct: 391 DISPFSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNSNYL 441 Query: 675 LVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXX 854 S D T+RL G + +TGH+ L S ++ S ED ++ WD Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLS--FSPNGKYLASAGEDQRLKLWDLAS 499 Query: 855 XXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965 SL + P + + M SV+ W Sbjct: 500 GTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVW 537 >ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit [Mus musculus] Length = 410 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 >ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit [Mus musculus] Length = 312 Score = 90.5 bits (223), Expect = 2e-18 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%) Frame = +3 Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290 +TL +V+ + F+ G +C +D T+KLW+ +RT GH + V A + Sbjct: 46 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 105 Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470 + S DK + +W+V +G V+ F GH V V+ N++ T+I S S D +VR W Sbjct: 106 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 165 Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647 +++ ++ + + IS S + ++ + ++ G P Sbjct: 166 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 209 Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827 G L S D T+++ D TG L GH N + ++SC++D Sbjct: 210 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 262 Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965 + WD SL +H T P ++TG + +V+ W Sbjct: 263 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 309 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 G + L+ DKT+K+W+ G L T GH V + S DK + +WD Sbjct: 210 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 269 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473 + + ++ H V ++ F++ A +++GS+D +V+ W+CR Sbjct: 270 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 312 >ref|NP_536353.2| F-box and WD-40 domain protein 7, archipelago homolog [Mus musculus] Length = 629 Score = 89.0 bits (219), Expect = 7e-18 Identities = 65/248 (26%), Positives = 108/248 (43%) Frame = +3 Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281 K L+TL G V + + N ++ +D+TLK+WN G + T GH V Sbjct: 334 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 389 Query: 282 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461 + SG D + +WD+ +GQ + GH V VQ++ V SG+ D V+ Sbjct: 390 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 447 Query: 462 WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641 WD + + TL + + S++ V++GS+D +R +D+ G G Sbjct: 448 WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 505 Query: 642 CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821 + + + DST+++ D TG+ L G + + CL V++ S+ Sbjct: 506 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAV-TCLQFNKNFVITSSD 564 Query: 822 DGKVFFWD 845 DG V WD Sbjct: 565 DGTVKLWD 572 Score = 84.3 bits (207), Expect = 2e-16 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Frame = +3 Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344 GN ++ D TLK+W+ + G LRT GH V + ++ + SG D+ + +W+ Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 370 Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524 +G+ + GH V + +E+ ++SGS D+++R WD E Q L + Sbjct: 371 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 423 Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695 ++V+ ++ V++G+ D V+ +D G DG + SLD+ Sbjct: 424 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 483 Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845 ++R+ D +TG + TGH++ L + +D +VS + D V WD Sbjct: 484 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 529 Score = 81.6 bits (200), Expect = 1e-15 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Frame = +3 Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371 D TL++W+ G L GH V +D + SG D V +WD + + Sbjct: 402 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 459 Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551 +GH +V ++QF + ++SGS+D+S+R WD + + TL + S +++ D+ Sbjct: 460 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 515 Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716 +++G+ D V+ +D++ GQ G S +TC F+++ + SS D T++L D Sbjct: 516 LVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 573 Query: 717 DTGELL 734 TGE + Sbjct: 574 KTGEFI 579 Score = 80.1 bits (196), Expect = 3e-15 Identities = 53/203 (26%), Positives = 91/203 (44%) Frame = +3 Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416 + GH V+ F + + SG D + +W +G+ +R GH G V + Q + Sbjct: 296 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 354 Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596 +I+SGS D +++ W+ + E + TL + + + + V++GS D +R +D+ Sbjct: 355 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 410 Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776 GQ +G C DG+ + + D +++ D +T L GH N+ Y L Sbjct: 411 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 470 Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845 HVVS S D + WD Sbjct: 471 F----DGIHVVSGSLDTSIRVWD 489 >ref|NP_034443.1| guanine nucleotide-binding protein, beta-5 subunit isoform 1 [Mus musculus] Length = 395 Score = 88.6 bits (218), Expect = 9e-18 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 6/183 (3%) Frame = +3 Query: 177 LTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL--DAAGSFDNSSLCSGGGDKAVVLWDVAS 350 LT D T LW+ G LL+++ GHG +VL D A S ++ SGG DK ++WD+ S Sbjct: 211 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 270 Query: 351 GQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISS 530 GQ V+ F H VN+V++ SGS D++ R +D R+ + + + + G SS Sbjct: 271 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 330 Query: 531 V--KVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDST 698 V +S + AG D + +D+ G S G + ++ S DG S D T Sbjct: 331 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 390 Query: 699 LRL 707 LR+ Sbjct: 391 LRV 393 Score = 65.5 bits (158), Expect = 8e-11 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 10/173 (5%) Frame = +3 Query: 273 AAGSFDNSSL--CSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQF--NEEATVILSGS 440 +A SF NS + + GD LWDV SGQ+++ F GH V + +E +SG Sbjct: 199 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 258 Query: 441 IDSSVRCWDCRSRKPEPVQTLDEARDGISSVKV--SDHEVLAGSVDGRVRRYDLRMGQLF 614 D WD RS + VQ + ++SV+ S +GS D R YDLR + Sbjct: 259 CDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 316 Query: 615 SDYVGSPI----TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQ 761 + Y I + FS G+ D T+ + D G + GH+N+ Sbjct: 317 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 369 Score = 52.4 bits (124), Expect = 7e-07 Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 16/215 (7%) Frame = +3 Query: 345 ASGQVVRKFR----GHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512 A GQ V K R GH KV + + ++ I+S S D V WD + E T+ Sbjct: 89 ALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT 148 Query: 513 RDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQ------------LFSDYVGSPITCTCFS 656 + S + G +D + Y L + + ++Y+ + C+ + Sbjct: 149 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---CSFTN 205 Query: 657 RDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVF 836 D Q L +S D T L D ++G+LL + GH LD SE VS D K Sbjct: 206 SDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 264 Query: 837 FWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941 WD S+ Y+P+ +G Sbjct: 265 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 299 >ref|NP_619733.1| guanine nucleotide-binding protein, beta-5 subunit isoform 2 [Mus musculus] Length = 353 Score = 88.6 bits (218), Expect = 9e-18 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 6/183 (3%) Frame = +3 Query: 177 LTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL--DAAGSFDNSSLCSGGGDKAVVLWDVAS 350 LT D T LW+ G LL+++ GHG +VL D A S ++ SGG DK ++WD+ S Sbjct: 169 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 228 Query: 351 GQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISS 530 GQ V+ F H VN+V++ SGS D++ R +D R+ + + + + G SS Sbjct: 229 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 288 Query: 531 V--KVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDST 698 V +S + AG D + +D+ G S G + ++ S DG S D T Sbjct: 289 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 348 Query: 699 LRL 707 LR+ Sbjct: 349 LRV 351 Score = 65.5 bits (158), Expect = 8e-11 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 10/173 (5%) Frame = +3 Query: 273 AAGSFDNSSL--CSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQF--NEEATVILSGS 440 +A SF NS + + GD LWDV SGQ+++ F GH V + +E +SG Sbjct: 157 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 216 Query: 441 IDSSVRCWDCRSRKPEPVQTLDEARDGISSVKV--SDHEVLAGSVDGRVRRYDLRMGQLF 614 D WD RS + VQ + ++SV+ S +GS D R YDLR + Sbjct: 217 CDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 274 Query: 615 SDYVGSPI----TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQ 761 + Y I + FS G+ D T+ + D G + GH+N+ Sbjct: 275 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 327 Score = 52.4 bits (124), Expect = 7e-07 Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 16/215 (7%) Frame = +3 Query: 345 ASGQVVRKFR----GHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512 A GQ V K R GH KV + + ++ I+S S D V WD + E T+ Sbjct: 47 ALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT 106 Query: 513 RDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQ------------LFSDYVGSPITCTCFS 656 + S + G +D + Y L + + ++Y+ + C+ + Sbjct: 107 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---CSFTN 163 Query: 657 RDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVF 836 D Q L +S D T L D ++G+LL + GH LD SE VS D K Sbjct: 164 SDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 222 Query: 837 FWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941 WD S+ Y+P+ +G Sbjct: 223 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 257 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,461,532 Number of Sequences: 45328 Number of extensions: 1432883 Number of successful extensions: 9144 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 6020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8442 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 3717940514 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)