Animal-Genome cDNA 20060611C-008095


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-008095
         (968 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a...    91   5e-20
Alignment   gi|NP_999497.1| G-beta like protein [Sus scrofa]                      68   4e-13
Alignment   gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ...    48   4e-07

>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
           scrofa]
          Length = 410

 Score = 90.5 bits (223), Expect = 5e-20
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407



 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|NP_999497.1| G-beta like protein [Sus scrofa]
          Length = 317

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 7/180 (3%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V  + DG + L+   D TL+LW+   GT  R + GH  +VL  A S DN  + SG  
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125

Query: 318 DKAVVLWD-VASGQVVRKFRGHAGKVNTVQF--NEEATVILSGSIDSSVRCWDCRSRKPE 488
           DK + LW+ +   +   +   H+  V+ V+F  N    +I+S   D  V+ W+  + K  
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-- 183

Query: 489 PVQTLDEARDG-ISSVKVSDHEVL--AGSVDGRVRRYDLRMGQ-LFSDYVGSPITCTCFS 656
            ++T      G +++V VS    L  +G  DG+   +DL  G+ L++   G  I   CFS
Sbjct: 184 -LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS 242



 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
 Frame = +3

Query: 177 LTCGSDKTLKLWNPLR-----GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWD 341
           L+   DKT+ +W   R     G   R   GH + V D   S D     SG  D  + LWD
Sbjct: 32  LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 91

Query: 342 VASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEAR-D 518
           + +G   R+F GH   V +V F+ +   I+SGS D +++ W+        VQ  DE+  +
Sbjct: 92  LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ--DESHSE 149

Query: 519 GISSVKVSDHE----VLAGSVDGRVRRYDLRMGQLFSDYVGSP--ITCTCFSRDGQCTLV 680
            +S V+ S +     +++   D  V+ ++L   +L ++++G    +     S DG     
Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 209

Query: 681 SSLDSTLRLLDKDTGELL 734
              D    L D + G+ L
Sbjct: 210 GGKDGQAMLWDLNEGKHL 227


>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
          Length = 493

 Score = 47.8 bits (112), Expect = 4e-07
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
 Frame = +3

Query: 102 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL---RTYSGHGYEVLD 272
           K+L  L+     V A+ +N D    L+ GS   + L   +R   L   R   GH  EV  
Sbjct: 262 KKLSMLEGHTARVGALAWNADQ---LSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318

Query: 273 AAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILS---GSI 443
              S D+  L SGG D  +++W+ +S   V+++  H   V  + ++     +L+   G+ 
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378

Query: 444 DSSVRCWDCRSRKPEPVQTLD 506
           D  +R W+  +   +P+Q +D
Sbjct: 379 DRCIRFWN--TLTGQPLQCID 397


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 995,035
Number of Sequences: 1040
Number of extensions: 26900
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 86862300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-008095
         (968 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]         104   9e-23
Alignment   gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [...    99   6e-21
Alignment   gi|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isof...    98   8e-21
Alignment   gi|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase ...    95   7e-20
Alignment   gi|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase ...    94   2e-19
Alignment   gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso...    90   2e-18
Alignment   gi|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isofor...    90   2e-18
Alignment   gi|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isofor...    90   2e-18
Alignment   gi|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isofor...    90   2e-18
Alignment   gi|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isofor...    90   2e-18

>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
          Length = 441

 Score =  104 bits (260), Expect = 9e-23
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 5/270 (1%)
 Frame = +3

Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317
           V  N  G+  +T   D+T KLW+   G  L T  GH   V   A +F+N     + +G  
Sbjct: 124 VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVY--AIAFNNPYGDKIATGSF 181

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
           DK   LW V +G+    FRGH  ++  + FN ++T++ +GS+D++ + WD +S +     
Sbjct: 182 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTL 241

Query: 498 TLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQC 671
           T   A     S   S + ++ GS D  V  ++   G+     +G  + I+   F+ D   
Sbjct: 242 TGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSL 301

Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXX 851
            L  S+D T +L D   G+ +   TGH ++   LD C       + + S DG    +   
Sbjct: 302 ILTGSMDKTCKLWDAVNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARIFSAA 359

Query: 852 XXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941
                            + ++P    LLTG
Sbjct: 360 TRECVTKLEGHEGEISKISFNPQGNRLLTG 389



 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 5/253 (1%)
 Frame = +3

Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278
           + L TL+  +  V A+ FN   G+   T   DKT KLW+   G    T+ GH  E++  +
Sbjct: 151 EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 210

Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458
            +  ++ + +G  D    LWD+ SG+ V    GH+ ++ ++ FN     I++GS D +V 
Sbjct: 211 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 270

Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYVG- 629
            W+  + +   V TL      ISS   +     +L GS+D   + +D   G+  +   G 
Sbjct: 271 VWEADTGR--KVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGH 328

Query: 630 -SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHV 806
              I  +CF   G+    +S D T R+    T E + +  GH+ +  K+    + +   +
Sbjct: 329 DDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS--FNPQGNRL 386

Query: 807 VSCSEDGKVFFWD 845
           ++ S D     WD
Sbjct: 387 LTGSSDKTARIWD 399



 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 4/234 (1%)
 Frame = +3

Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332
           FN       T   D T KLW+   G  + T +GH  E++  + +   + + +G  D  V 
Sbjct: 211 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 270

Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512
           +W+  +G+ V    GH  ++++  FN + ++IL+GS+D + + WD  + K   V TL   
Sbjct: 271 VWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGK--CVATLTGH 328

Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680
            D I  S    +   +   S DG  R +     +  +   G    I+   F+  G   L 
Sbjct: 329 DDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLT 388

Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842
            S D T R+ D  TG+ L    GH ++ +   C  + +   +++ S+D     W
Sbjct: 389 GSSDKTARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGDIIITGSKDNTCRIW 440



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +3

Query: 117 LDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 296
           L+  +G +  + FN  GN  LT  SDKT ++W+   G  L+   GH  E+   A ++   
Sbjct: 367 LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGD 426

Query: 297 SLCSGGGDKAVVLW 338
            + +G  D    +W
Sbjct: 427 IIITGSKDNTCRIW 440


>ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus]
          Length = 800

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
 Frame = +3

Query: 90   ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269
            E     LK L    G V    F+ D NY L+   D T++LW+    T L  Y GH Y V 
Sbjct: 530  EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 589

Query: 270  DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449
            D   S       SGG D+   LW     Q +R F GH   VN  +F+  +  + +GS D 
Sbjct: 590  DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 649

Query: 450  SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629
            +VR WD  +     + T  +      +   +   +  G+ DGRV  +D+  G +  +  G
Sbjct: 650  TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709

Query: 630  SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713
               T C+  FSRDG+     S+D+T+RL D
Sbjct: 710  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739



 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
 Frame = +3

Query: 138  VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
            V   RF+ + NY  T  +D+T++LW+ L G  +R ++GH   +     S +   L +G  
Sbjct: 630  VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT 689

Query: 318  DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
            D  V+LWD+  G +V + +GH   V +++F+ +  ++ SGS+D++VR WD   +  E V+
Sbjct: 690  DGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA-VKAFEDVE 748

Query: 498  TLD-EARDGISSVKVSDHEVLAGS 566
            T D     G  ++  +  E+L G+
Sbjct: 749  TDDFTTATGHINLPENSQELLLGT 772


>ref|XP_614481.2| PREDICTED: similar to WD-repeat protein 57 isoform 1 [Bos taurus]
          Length = 358

 Score = 98.2 bits (243), Expect = 8e-21
 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 11/308 (3%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227
           P A+    P PR   L Q  +  L   +G V   +F+ +G+   + G D+ + LWN    
Sbjct: 42  PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99

Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401
                T  GH   V++   + D S L S   DK V +WD  +G+ V++ +GH   VN+  
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159

Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578
                  ++ +GS D +V+ WD   RK   +QT       ++ +   +  ++++G +D  
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 217

Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734
           ++ +DLR  +L     G    +T    S +G   L +++D+T+R+ D      K+    +
Sbjct: 218 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 277

Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914
            +   H  ++  L C  S   + + + S D  V+ WD                   + +H
Sbjct: 278 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 337

Query: 915 PTEPCLLT 938
           P EP +L+
Sbjct: 338 PDEPIILS 345



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
 Frame = +3

Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290
           +V  +  + +G+Y L+   D T+++W+      +   ++ + G  H +E  +L  + S D
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 297

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446
            S + +G  D+ V +WD  S +++ K  GHAG +N V F+ +  +ILS S D
Sbjct: 298 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349


>ref|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 577

 Score = 95.1 bits (235), Expect = 7e-20
 Identities = 44/113 (38%), Positives = 73/113 (64%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V+F+ + NY  T  +DKT++LW+  +G  +R ++GH   VL  A S ++  L S G 
Sbjct: 417 VDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGE 476

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476
           D+ + LWD+ASG + ++ RGH   + ++ F+ ++++I S S+D+SVR WD RS
Sbjct: 477 DQRLKLWDLASGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVWDIRS 529



 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%)
 Frame = +3

Query: 108  LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287
            +K L    G V + RF  D +  L+C  D +++ W+    T    Y GH Y V D   S 
Sbjct: 323  MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 382

Query: 288  DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 467
             +    SG  D+   LW       +R F GH   V+ V+F+  +  + +GS D +VR W 
Sbjct: 383  HSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS 442

Query: 468  CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SP 635
              +++   V+     R  + S+  S +     S   D R++ +DL  G L+ +  G    
Sbjct: 443  --TQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHTDS 500

Query: 636  ITCTCFSRDGQCTLVSSLDSTLRL-----------LDKDTGELLGEYT 746
            IT   FS D      +S+D+++R+            D  + ELLG YT
Sbjct: 501  ITSLTFSSDSSLIASASMDNSVRVWDIRSTHCSTPADGSSSELLGVYT 548



 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 3/210 (1%)
 Frame = +3

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           GT ++   GH   V       D+S L S   D ++  WD+ S      ++GHA  V  + 
Sbjct: 320 GTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 379

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584
            +  +    SGS D + R W      P  +     A         + + +  GS D  VR
Sbjct: 380 ISPHSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNSNYLATGSTDKTVR 439

Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755
            +  + G   +LF+ + G P+    FS + +    +  D  L+L D  +G L  E  GH 
Sbjct: 440 LWSTQQGNSVRLFTGHRG-PVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHT 498

Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           +    L    S   + + S S D  V  WD
Sbjct: 499 DSITSL--TFSSDSSLIASASMDNSVRVWD 526



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 10/219 (4%)
 Frame = +3

Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494
           D  +G  ++  RGH G V + +F  +++ +LS S D S+R WD  S            PV
Sbjct: 316 DDNAGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 375

Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQC 671
             LD +   +     S D      S D   R Y LR   +F+ ++ + + C  F  +   
Sbjct: 376 WDLDISPHSLYFASGSHDRTARLWSFD---RTYPLR---IFAGHL-ADVDCVKFHPNSNY 428

Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXX 851
               S D T+RL     G  +  +TGH+     L    S    ++ S  ED ++  WD  
Sbjct: 429 LATGSTDKTVRLWSTQQGNSVRLFTGHRGP--VLSLAFSPNSKYLASAGEDQRLKLWDLA 486

Query: 852 XXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965
                           SL +      + +  M  SV+ W
Sbjct: 487 SGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVW 525


>ref|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 310

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 43/113 (38%), Positives = 72/113 (63%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V+F+ + NY  T  +DKT++LW+  +G  +R ++GH   VL  A S +   L S G 
Sbjct: 150 VDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 209

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476
           D+ + LWD+ASG + ++ RGH   + ++ F+ +++++ S S+D+SVR WD RS
Sbjct: 210 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 262



 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 15/229 (6%)
 Frame = +3

Query: 108 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287
           +K L    G V + RF  D +  L+C  D +++ W+    T    Y GH Y V D   S 
Sbjct: 56  MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 115

Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 467
            +    S   D+   LW       +R + GH   V+ V+F+  +  + +GS D +VR W 
Sbjct: 116 HSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS 175

Query: 468 CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SP 635
             +++   V+     R  + S+  S +     S   D R++ +DL  G L+ +  G    
Sbjct: 176 --TQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDN 233

Query: 636 ITCTCFSRDGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749
           IT   FS D      +S+D+++R+            D  + EL+G YTG
Sbjct: 234 ITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTG 282



 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%)
 Frame = +3

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           GT ++   GH   V       D+S L S   D ++  WD+ S      ++GHA  V  + 
Sbjct: 53  GTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 112

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584
            +  +    S S D + R W      P  +     A         + + +  GS D  VR
Sbjct: 113 ISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 172

Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755
            +  + G   +LF+ + G P+    FS +G+    +  D  L+L D  +G L  E  GH 
Sbjct: 173 LWSTQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 231

Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           +    L    S   + V S S D  V  WD
Sbjct: 232 DNITSL--TFSPDSSLVASASMDNSVRVWD 259



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
 Frame = +3

Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308
           +G V ++ F+ +G Y  + G D+ LKLW+   GTL +   GH   +     S D+S + S
Sbjct: 189 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVAS 248

Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437
              D +V +WD+           +S ++V  + G    V +VQF     ++++G
Sbjct: 249 ASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTG 302


>ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Bos taurus]
          Length = 410

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V  + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407



 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_883815.1| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 6 [Bos
            taurus]
          Length = 706

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 66/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 411  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 466

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 467  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 524

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 525  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 582

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G  N+      CL      V++ S+
Sbjct: 583  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 641

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 642  DGTVKLWD 649



 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165  GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
            GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 390  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 447

Query: 345  ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
             +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 448  ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 500

Query: 525  SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
            ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 501  AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 560

Query: 696  TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
            ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 561  SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 606



 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192  DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
            D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 479  DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 536

Query: 372  RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
            +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 537  QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 592

Query: 552  VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
            +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 593  LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 650

Query: 717  DTGELL 734
             TGE +
Sbjct: 651  KTGEFI 656



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 373 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 431

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 432 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 487

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 488 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 547

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 548 F----DGIHVVSGSLDTSIRVWD 566


>ref|XP_883785.1| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 5 [Bos
            taurus]
          Length = 589

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 66/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 294  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 349

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 350  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 407

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 408  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 465

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G  N+      CL      V++ S+
Sbjct: 466  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 524

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 525  DGTVKLWD 532



 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 330

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
            +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 331 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 383

Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
           ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 384 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 443

Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 444 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 489



 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
           D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 362 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 419

Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
           +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 420 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 475

Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
           +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 476 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 533

Query: 717 DTGELL 734
            TGE +
Sbjct: 534 KTGEFI 539



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 256 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 314

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 315 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 370

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 371 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 430

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 431 F----DGIHVVSGSLDTSIRVWD 449


>ref|XP_883749.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 4 [Bos
            taurus]
          Length = 629

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 66/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 334  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 389

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 390  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 447

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 448  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 505

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G  N+      CL      V++ S+
Sbjct: 506  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 564

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 565  DGTVKLWD 572



 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 370

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
            +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 371 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 423

Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
           ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 424 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 483

Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 484 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 529



 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
           D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 402 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 459

Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
           +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 460 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 515

Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
           +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 516 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 573

Query: 717 DTGELL 734
            TGE +
Sbjct: 574 KTGEFI 579



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 296 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 354

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 355 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 410

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 411 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 470

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 471 F----DGIHVVSGSLDTSIRVWD 489


>ref|XP_613742.2| PREDICTED: similar to F-box protein FBW7 isoform 1 isoform 1 [Bos
            taurus]
          Length = 706

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 66/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 411  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 466

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 467  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 524

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 525  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 582

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G  N+      CL      V++ S+
Sbjct: 583  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 641

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 642  DGTVKLWD 649



 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165  GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
            GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 390  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 447

Query: 345  ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
             +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 448  ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 500

Query: 525  SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
            ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 501  AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 560

Query: 696  TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
            ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 561  SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 606



 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192  DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
            D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 479  DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 536

Query: 372  RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
            +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 537  QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 592

Query: 552  VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
            +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 593  LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 650

Query: 717  DTGELL 734
             TGE +
Sbjct: 651  KTGEFI 656



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 373 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 431

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 432 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 487

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 488 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 547

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 548 F----DGIHVVSGSLDTSIRVWD 566


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,536,260
Number of Sequences: 33508
Number of extensions: 1072360
Number of successful extensions: 6952
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6176
length of database: 16,112,626
effective HSP length: 102
effective length of database: 12,694,810
effective search space used: 2792858200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-008095
         (968 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_542047.1| PREDICTED: similar to mitogen-activated protein...   583   e-167
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...   144   2e-34
Alignment   gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]   102   7e-22
Alignment   gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can...    98   1e-20
Alignment   gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ...    93   3e-19
Alignment   gi|XP_868519.1| PREDICTED: similar to platelet-activating facto...    91   1e-18
Alignment   gi|XP_537775.2| PREDICTED: similar to platelet-activating facto...    91   2e-18
Alignment   gi|XP_854482.1| PREDICTED: similar to platelet-activating facto...    91   2e-18
Alignment   gi|XP_868508.1| PREDICTED: similar to platelet-activating facto...    91   2e-18
Alignment   gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor...    90   3e-18

>ref|XP_542047.1| PREDICTED: similar to mitogen-activated protein kinase organizer 1
           [Canis familiaris]
          Length = 315

 Score =  583 bits (1504), Expect = e-167
 Identities = 279/304 (91%), Positives = 284/304 (93%)
 Frame = +3

Query: 57  MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236
           MAFPEPKPRGPELPQKR+KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL
Sbjct: 1   MAFPEPKPRGPELPQKRVKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE
Sbjct: 61  RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 120

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
           ATVILSGSIDSS+RCWDCRSR+PEPVQTLDEARDGISSVKVSDHEVL+GSVDGRVRRYDL
Sbjct: 121 ATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGISSVKVSDHEVLSGSVDGRVRRYDL 180

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
           RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD
Sbjct: 181 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 240

Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956
           CCLSERDTHVVSCSEDGKV+FWD                 QSL YHPTEPCLLT MGGSV
Sbjct: 241 CCLSERDTHVVSCSEDGKVYFWDLVEGALALALPVGPGVVQSLAYHPTEPCLLTAMGGSV 300

Query: 957 QCWR 968
            CWR
Sbjct: 301 HCWR 304


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris]
          Length = 334

 Score =  144 bits (362), Expect = 2e-34
 Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 10/302 (3%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224
           PS+ A  + KP  P  P   LK TL     AV +V+F+ +G +  +  +DK +K+W    
Sbjct: 19  PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           G   +T SGH   + D A S D++ L S   DK + +WDV+SG+ ++  +GH+  V    
Sbjct: 77  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRK--------PEPVQTLDEARDGISSVKVSDHEVLA 560
           FN ++ +I+SGS D SVR WD ++ K         +PV  +   RDG S +  S ++ L 
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLC 195

Query: 561 GSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGE 740
           G           R  +L  D    P++   FS +G+  L ++LD+TL+L D   G+ L  
Sbjct: 196 GKTGNAAS----RCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

Query: 741 YTGHKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHP 917
           YTGHKN++Y +    S      +VS SED  V+ W+                  S   HP
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311

Query: 918 TE 923
           TE
Sbjct: 312 TE 313



 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
 Frame = +3

Query: 117 LDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 296
           LD     V  V+F+ +G Y L    D TLKLW+  +G  L+TY+GH  E      +F  +
Sbjct: 210 LDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269

Query: 297 S---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DSSVRC 461
               + SG  D  V +W++ + ++V+K +GH   V +   +    +I S ++  D +++ 
Sbjct: 270 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 329

Query: 462 W--DC 470
           W  DC
Sbjct: 330 WKSDC 334


>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]
          Length = 415

 Score =  102 bits (253), Expect = 7e-22
 Identities = 76/272 (27%), Positives = 121/272 (44%), Gaps = 7/272 (2%)
 Frame = +3

Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317
           V  N  G+  +T   D+T KLW+   G  L T  GH   V   A +F+N     + +G  
Sbjct: 98  VALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVY--AIAFNNPYGDKIATGSF 155

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
           DK   LW V +G+    FRGH  ++  + FN ++T++ +GS+D++ + WD +S   E V 
Sbjct: 156 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQS--GEEVF 213

Query: 498 TL-DEARDGIS-SVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665
           TL   + + IS S   S   ++ GS D  V  ++   G+     +G  + I+   F+ D 
Sbjct: 214 TLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDC 273

Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
              L  S+D T  L D   G+ +   TGH ++   LD C       + + S DG    + 
Sbjct: 274 SLILTGSMDKTCMLWDASNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARVFS 331

Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941
                              + ++P    LLTG
Sbjct: 332 AATRKCLTKLEGHEGEISKISFNPQGNRLLTG 363



 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 5/253 (1%)
 Frame = +3

Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278
           + L TL+  +  V A+ FN   G+   T   DKT KLW+   G    T+ GH  E++  +
Sbjct: 125 EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 184

Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458
            +  ++ + +G  D    LWD+ SG+ V   RGH+ ++ ++ FN     I++GS D +V 
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244

Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYVG- 629
            W+  + +   V TL      ISS   +     +L GS+D     +D   G+  +   G 
Sbjct: 245 VWEADTGR--KVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGH 302

Query: 630 -SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHV 806
              I  +CF   G+    +S D T R+    T + L +  GH+ +  K+    + +   +
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS--FNPQGNRL 360

Query: 807 VSCSEDGKVFFWD 845
           ++ S D     WD
Sbjct: 361 LTGSADETARIWD 373



 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 4/234 (1%)
 Frame = +3

Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332
           FN       T   D T KLW+   G  + T  GH  E++  + +     + +G  D  V 
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244

Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512
           +W+  +G+ V    GH  ++++  FN + ++IL+GS+D +   WD  + K   V TL   
Sbjct: 245 VWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKC--VATLTGH 302

Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680
            D I  S    +   +   S DG  R +     +  +   G    I+   F+  G   L 
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLT 362

Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842
            S D T R+ D  TG+ L    GH ++ +   C  + +   +++ S+D     W
Sbjct: 363 GSADETARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGDIIITGSKDNTCRIW 414



 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           + +  FN D +  LT   DKT  LW+   G  + T +GH  E+LD+   +    + +   
Sbjct: 264 ISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
           D    ++  A+ + + K  GH G+++ + FN +   +L+GS D + R WD ++   + +Q
Sbjct: 324 DGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQT--GQCLQ 381

Query: 498 TLDEARDGISS--VKVSDHEVLAGSVDGRVR 584
            L+   D I S         ++ GS D   R
Sbjct: 382 VLEGHTDEIFSCAFNYKGDIIITGSKDNTCR 412


>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris]
          Length = 358

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 11/308 (3%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227
           P A+    P PR   L Q  +  L   +G V   +F+ +G+   + G D+ + LWN    
Sbjct: 42  PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99

Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401
                T  GH   V++   + D S L S   DK V +WD  +G+ V++ +GH   VN+  
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159

Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578
                  ++ +GS D +V+ WD   RK   +QT       ++ +   +  ++++G +D  
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 217

Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734
           ++ +DLR  +L     G    +T    S +G   L +++D+T+R+ D      K+    +
Sbjct: 218 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 277

Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914
            +   H  ++  L C  S   + + + S D  V+ WD                   + +H
Sbjct: 278 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 337

Query: 915 PTEPCLLT 938
           P EP +L+
Sbjct: 338 PDEPIILS 345



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
 Frame = +3

Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290
           +V  +  + +G+Y L+   D T+++W+      +   ++ + G  H +E  +L  + S D
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 297

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446
            S + +G  D+ V +WD  S +++ K  GHAG +N V F+ +  +ILS S D
Sbjct: 298 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349


>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF associated factor 65 beta) (PAF65-beta)
           [Canis familiaris]
          Length = 589

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 43/113 (38%), Positives = 72/113 (63%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V+F+ + NY  T  +DKT++LW+  +G  +R ++GH   VL  A S +   L S G 
Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 488

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476
           D+ + LWD+ASG + ++ RGH   + ++ F+ ++++I S S+D+SVR WD R+
Sbjct: 489 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541



 Score = 85.1 bits (209), Expect = 9e-17
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
 Frame = +3

Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311
           G V + RF  D +  L+C  D +++ W+    T    Y GH Y V D   S  +    SG
Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASG 402

Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491
             D+   LW       +R + GH   V+ V+F+  +  + +GS D +VR W   +++   
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460

Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659
           V+     R  + S+  S +     S   D R++ +DL  G L+ +  G    IT   FS 
Sbjct: 461 VRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSP 520

Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749
           D      +S+D+++R+            D  +GEL+G YTG
Sbjct: 521 DSSLIASASMDNSVRVWDIRNTYCSTPADGSSGELVGVYTG 561



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 3/210 (1%)
 Frame = +3

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           GT ++   GH   V       D+S L S   D ++  WD+ S      ++GHA  V  + 
Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 391

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584
            +  +    SGS D + R W      P  +     A         + + +  GS D  VR
Sbjct: 392 ISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451

Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755
            +  + G   +LF+ + G P+    FS +G+    +  D  L+L D  +G L  E  GH 
Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510

Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           +    L    S   + + S S D  V  WD
Sbjct: 511 DNITSL--TFSPDSSLIASASMDNSVRVWD 538



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
 Frame = +3

Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308
           +G V ++ F+ +G Y  + G D+ LKLW+   GTL +   GH   +     S D+S + S
Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIAS 527

Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437
              D +V +WD+           +SG++V  + G    V +VQF     ++++G
Sbjct: 528 ASMDNSVRVWDIRNTYCSTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTG 581



 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 12/221 (5%)
 Frame = +3

Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494
           D  +G  ++  RGH G V + +F  +++ +LS S D S+R WD  S            PV
Sbjct: 328 DDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 387

Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665
             LD +   +     S D      S D   R Y LR+      Y G  + + C  F  + 
Sbjct: 388 WDLDISPYSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNS 438

Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
                 S D T+RL     G  +  +TGH+     L    S    ++ S  ED ++  WD
Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGP--VLSLAFSPNGKYLASAGEDQRLKLWD 496

Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965
                             SL + P    + +  M  SV+ W
Sbjct: 497 LASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVW 537


>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 5 [Canis familiaris]
          Length = 415

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 1/286 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTC 650
            +++                 ++ +HE +   +          + +       +P T   
Sbjct: 264 ATKE--------------CKAELREHEHVVECISWAPESSYSSISEATGSEEENPRTKKS 309

Query: 651 FSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGK 830
             + G   L  S D T+++ D  TG  L    GH N  +            ++SC++D  
Sbjct: 310 -GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKT 366

Query: 831 VFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
           +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 367 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 412



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 313 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 372

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 373 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 415



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 6/252 (2%)
 Frame = +3

Query: 108 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287
           ++T+      V +V    +G++ ++   DKT+K+W    G  ++T++GH   V     + 
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244

Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVI----LSGSIDSSV 455
           D + + S   D+ V +W VA+ +   + R H   V  + +  E++       +GS + + 
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEENP 304

Query: 456 RCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSP 635
           R    +S KP P                    +L+GS D  ++ +D+  G      VG  
Sbjct: 305 R--TKKSGKPGPF-------------------LLSGSRDKTIKMWDVSTGMCLMTLVGHD 343

Query: 636 --ITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVV 809
             +    F   G+  L  + D TLR+ D      +     H++    LD    +   +VV
Sbjct: 344 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD--FHKTAPYVV 401

Query: 810 SCSEDGKVFFWD 845
           + S D  V  W+
Sbjct: 402 TGSVDQTVKVWE 413


>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 1 [Canis familiaris]
          Length = 372

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 106 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 165

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 166 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 225

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 226 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 269

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 270 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 322

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 323 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 369



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 270 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 329

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 330 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 372


>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 2 [Canis familiaris]
          Length = 410

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 3 [Canis familiaris]
          Length = 345

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 79  RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 138

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 139 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 198

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 199 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 242

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 243 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 295

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 296 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 342



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 243 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 302

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 303 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 345


>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
            familiaris]
          Length = 589

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 66/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 294  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 349

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 350  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 407

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 408  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 465

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G  N+      CL      V++ S+
Sbjct: 466  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSD 524

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 525  DGTVKLWD 532



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 330

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
            +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 331 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 383

Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
           ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 384 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 443

Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 444 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 489



 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
           D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 362 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 419

Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
           +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 420 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 475

Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
           +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 476 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 533

Query: 717 DTGELL 734
            TGE +
Sbjct: 534 KTGEFI 539



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 256 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 314

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 315 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 370

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 371 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 430

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 431 F----DGIHVVSGSLDTSIRVWD 449


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,817,519
Number of Sequences: 33732
Number of extensions: 1244986
Number of successful extensions: 8116
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7186
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3458485011
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-008095
         (968 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_115708.1| mitogen-activated protein kinase organizer 1 [H...   583   e-167
Alignment   gi|NP_438172.1| WD repeat domain 5 [Homo sapiens]                    149   5e-36
Alignment   gi|NP_060058.1| WD repeat domain 5 [Homo sapiens]                    149   5e-36
Alignment   gi|NP_061942.2| WD repeat domain 5B [Homo sapiens]                   147   1e-35
Alignment   gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]        104   1e-22
Alignment   gi|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo s...    99   7e-21
Alignment   gi|NP_008882.2| TBP-associated factor 5 [Homo sapiens]                99   7e-21
Alignment   gi|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo ...    92   7e-19
Alignment   gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...    92   9e-19
Alignment   gi|NP_000421.1| platelet-activating factor acetylhydrolase, iso...    91   2e-18

>ref|NP_115708.1| mitogen-activated protein kinase organizer 1 [Homo sapiens]
          Length = 315

 Score =  583 bits (1504), Expect = e-167
 Identities = 279/304 (91%), Positives = 283/304 (93%)
 Frame = +3

Query: 57  MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236
           MAFPEPKPR PELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL
Sbjct: 1   MAFPEPKPRPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE
Sbjct: 61  RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 120

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
           ATVILSGSIDSS+RCWDCRSR+PEPVQTLDEARDG+SSVKVSDHE+LAGSVDGRVRRYDL
Sbjct: 121 ATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDL 180

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
           RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEY GHKNQEYKLD
Sbjct: 181 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLD 240

Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956
           CCLSERDTHVVSCSEDGKVFFWD                 QSL YHPTEPCLLT MGGSV
Sbjct: 241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQSLAYHPTEPCLLTAMGGSV 300

Query: 957 QCWR 968
           QCWR
Sbjct: 301 QCWR 304


>ref|NP_438172.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  149 bits (375), Expect = 5e-36
 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224
           PS+ A  + KP  P  P   LK TL     AV +V+F+ +G +  +  +DK +K+W    
Sbjct: 19  PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           G   +T SGH   + D A S D++ L S   DK + +WDV+SG+ ++  +GH+  V    
Sbjct: 77  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578
           FN ++ +I+SGS D SVR WD ++ K   ++TL    D +S+V  +     +++ S DG 
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749
            R +D   GQ     +     P++   FS +G+  L ++LD+TL+L D   G+ L  YTG
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254

Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923
           HKN++Y +    S      +VS SED  V+ W+                  S   HPTE
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313



 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
 Frame = +3

Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284
           LKTL D     V  V+F+ +G Y L    D TLKLW+  +G  L+TY+GH  E      +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449
           F  +    + SG  D  V +W++ + ++V+K +GH   V +   +    +I S ++  D 
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 450 SVRCW--DC 470
           +++ W  DC
Sbjct: 326 TIKLWKSDC 334


>ref|NP_060058.1| WD repeat domain 5 [Homo sapiens]
          Length = 334

 Score =  149 bits (375), Expect = 5e-36
 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224
           PS+ A  + KP  P  P   LK TL     AV +V+F+ +G +  +  +DK +K+W    
Sbjct: 19  PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           G   +T SGH   + D A S D++ L S   DK + +WDV+SG+ ++  +GH+  V    
Sbjct: 77  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578
           FN ++ +I+SGS D SVR WD ++ K   ++TL    D +S+V  +     +++ S DG 
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749
            R +D   GQ     +     P++   FS +G+  L ++LD+TL+L D   G+ L  YTG
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254

Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923
           HKN++Y +    S      +VS SED  V+ W+                  S   HPTE
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313



 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
 Frame = +3

Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284
           LKTL D     V  V+F+ +G Y L    D TLKLW+  +G  L+TY+GH  E      +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449
           F  +    + SG  D  V +W++ + ++V+K +GH   V +   +    +I S ++  D 
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 450 SVRCW--DC 470
           +++ W  DC
Sbjct: 326 TIKLWKSDC 334


>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens]
          Length = 330

 Score =  147 bits (372), Expect = 1e-35
 Identities = 95/286 (33%), Positives = 144/286 (50%), Gaps = 7/286 (2%)
 Frame = +3

Query: 87  PELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYE 263
           PE P   LK TL     AV +V+F+ +G +  +  +D+ + +W    G   +T  GH  E
Sbjct: 26  PENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLE 85

Query: 264 VLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI 443
           + D A S D+S L S   DK + LWDV SG+ ++  +GH+  V    FN  + +I+SGS 
Sbjct: 86  ISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSF 145

Query: 444 DSSVRCWDCRSRKPEPVQTLDEARDGISSV--KVSDHEVLAGSVDGRVRRYDLRMGQLFS 617
           D +V+ W+ ++ K   ++TL    D +S+V    S   +++GS DG  R +D   GQ   
Sbjct: 146 DETVKIWEVKTGK--CLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLK 203

Query: 618 DYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLS 788
             V     P++   FS +G+  L ++LD+TL+L D   G  L  YTGHKN++Y +    S
Sbjct: 204 TLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFS 263

Query: 789 -ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923
                 +VS SED  V+ W+                  S   HPTE
Sbjct: 264 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTE 309



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
 Frame = +3

Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284
           LKTL D     V  V+F+ +G Y LT   D TLKLW+  RG  L+TY+GH  E      +
Sbjct: 202 LKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFAN 261

Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449
           F  +    + SG  D  V +W++ + ++V+K +GH   V +   +    +I S ++  D 
Sbjct: 262 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDK 321

Query: 450 SVRCW 464
           +++ W
Sbjct: 322 TIKLW 326


>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
          Length = 415

 Score =  104 bits (259), Expect = 1e-22
 Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 7/272 (2%)
 Frame = +3

Query: 147 VRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDN---SSLCSGGG 317
           V  N  G+  +T   D+T KLW+   G  L T  GH   V   A +F+N     + +G  
Sbjct: 98  VALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVY--AIAFNNPYGDKIATGSF 155

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
           DK   LW V +G+    FRGH  ++  + FN ++T++ +GS+D++ + WD ++   E V 
Sbjct: 156 DKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQN--GEEVY 213

Query: 498 TL-DEARDGIS-SVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665
           TL   + + IS S   S   ++ GS D  V  +D   G+  +  +G  + I+   F+ D 
Sbjct: 214 TLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDC 273

Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
              L  S+D T +L D   G+ +   TGH ++   LD C       + + S DG    + 
Sbjct: 274 SLILTGSMDKTCKLWDATNGKCVATLTGHDDE--ILDSCFDYTGKLIATASADGTARIFS 331

Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941
                              + ++P    LLTG
Sbjct: 332 AATRKCIAKLEGHEGEISKISFNPQGNHLLTG 363



 Score =  100 bits (250), Expect = 1e-21
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 3/251 (1%)
 Frame = +3

Query: 102 KRLKTLDCGQGAVRAVRFNVD-GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278
           + L TL+  +  V A+ FN   G+   T   DKT KLW+   G    T+ GH  E++  +
Sbjct: 125 EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLS 184

Query: 279 GSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVR 458
            +  ++ + +G  D    LWD+ +G+ V   RGH+ ++ ++ FN     I++GS D +V 
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244

Query: 459 CWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--S 632
            WD  + +   +     A    +S       +L GS+D   + +D   G+  +   G   
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD 304

Query: 633 PITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVS 812
            I  +CF   G+    +S D T R+    T + + +  GH+ +  K+    + +  H+++
Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS--FNPQGNHLLT 362

Query: 813 CSEDGKVFFWD 845
            S D     WD
Sbjct: 363 GSSDKTARIWD 373



 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 4/234 (1%)
 Frame = +3

Query: 153 FNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVV 332
           FN       T   D T KLW+   G  + T  GH  E++  + +     + +G  D  VV
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244

Query: 333 LWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512
           +WD  +G+ V    GH  ++++  FN + ++IL+GS+D + + WD  + K   V TL   
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGK--CVATLTGH 302

Query: 513 RDGI--SSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLV 680
            D I  S    +   +   S DG  R +     +  +   G    I+   F+  G   L 
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLT 362

Query: 681 SSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFW 842
            S D T R+ D  TG+ L    GH ++ +   C  + +   V++ S+D     W
Sbjct: 363 GSSDKTARIWDAQTGQCLQVLEGHTDEIF--SCAFNYKGNIVITGSKDNTCRIW 414



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           + +  FN D +  LT   DKT KLW+   G  + T +GH  E+LD+   +    + +   
Sbjct: 264 ISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASA 323

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQ 497
           D    ++  A+ + + K  GH G+++ + FN +   +L+GS D + R WD ++   + +Q
Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQT--GQCLQ 381

Query: 498 TLDEARDGISS--VKVSDHEVLAGSVDGRVR 584
            L+   D I S       + V+ GS D   R
Sbjct: 382 VLEGHTDEIFSCAFNYKGNIVITGSKDNTCR 412



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/80 (28%), Positives = 41/80 (51%)
 Frame = +3

Query: 99  QKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAA 278
           +K +  L+  +G +  + FN  GN+ LT  SDKT ++W+   G  L+   GH  E+   A
Sbjct: 335 RKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCA 394

Query: 279 GSFDNSSLCSGGGDKAVVLW 338
            ++  + + +G  D    +W
Sbjct: 395 FNYKGNIVITGSKDNTCRIW 414


>ref|NP_004805.1| WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
          Length = 357

 Score = 98.6 bits (244), Expect = 7e-21
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 11/308 (3%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRG 227
           P A+    P PR   L Q  +  L   +G V   +F+ +G+   + G D+ + LWN    
Sbjct: 41  PGALLQAGP-PRCSSL-QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 98

Query: 228 T-LLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNT-V 401
                T  GH   V++   + D S L S   DK V +WD  +G+ V++ +GH   VN+  
Sbjct: 99  CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 158

Query: 402 QFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGIS-SVKVSDHEVLAGSVDGR 578
              +   ++ +GS D +V+ WD   RK   +QT       ++ +   +  ++++G +D  
Sbjct: 159 PARKSPQLVCTGSDDGTVKLWDI--RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDND 216

Query: 579 VRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLD------KDTGELL 734
           ++ +DLR  +L     G    +T    S +G   L +++D+T+R+ D      K+    +
Sbjct: 217 IKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI 276

Query: 735 GEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYH 914
            +   H  ++  L C  S   + + + S D  V+ WD                   + +H
Sbjct: 277 FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFH 336

Query: 915 PTEPCLLT 938
           P EP +++
Sbjct: 337 PDEPIIIS 344



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
 Frame = +3

Query: 135 AVRAVRFNVDGNYCLTCGSDKTLKLWNPL----RGTLLRTYSG--HGYE--VLDAAGSFD 290
           +V  +  + +G+Y L+   D T+++W+      +   ++ + G  H +E  +L  + S D
Sbjct: 237 SVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 296

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 446
            S + +G  D+ V +WD  S +++ K  GHAG +N V F+ +  +I+S S D
Sbjct: 297 GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSD 348


>ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens]
          Length = 800

 Score = 98.6 bits (244), Expect = 7e-21
 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
 Frame = +3

Query: 90   ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269
            E     LK L    G V    F+ D NY L+   D T++LW+    T L  Y GH Y V 
Sbjct: 530  EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 589

Query: 270  DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449
            D   S       SGG D+   LW     Q +R F GH   VN  +F+  +  + +GS D 
Sbjct: 590  DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 649

Query: 450  SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629
            +VR WD  +     + T  +      +   +   +  G+ DGRV  +D+  G +  +  G
Sbjct: 650  TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709

Query: 630  SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713
               T C+  FSRDG+     S+D+T+RL D
Sbjct: 710  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739


>ref|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo sapiens]
          Length = 589

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 43/113 (38%), Positives = 71/113 (62%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V+F+ + NY  T  +DKT++LW+  +G  +R ++GH   VL  A S +   L S G 
Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE 488

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476
           D+ + LWD+ASG + ++ RGH   + ++ F+ ++ +I S S+D+SVR WD R+
Sbjct: 489 DQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541



 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
 Frame = +3

Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311
           G V + RF  D +  L+C  D +++ W+    T    Y GH Y V D   S  +    SG
Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASG 402

Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491
             D+   LW       +R + GH   V+ V+F+  +  + +GS D +VR W   +++   
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460

Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659
           V+     R  + S+  S +     S   D R++ +DL  G L+ +  G    IT   FS 
Sbjct: 461 VRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSP 520

Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749
           D      +S+D+++R+            D  + EL+G YTG
Sbjct: 521 DSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTG 561



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%)
 Frame = +3

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           GT ++   GH   V       D+S L S   D ++  WD+ S      ++GHA  V  + 
Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 391

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584
            +  +    SGS D + R W      P  +     A         + + +  GS D  VR
Sbjct: 392 ISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451

Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755
            +  + G   +LF+ + G P+    FS +G+    +  D  L+L D  +G L  E  GH 
Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510

Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           +    L    S     + S S D  V  WD
Sbjct: 511 DNITSL--TFSPDSGLIASASMDNSVRVWD 538



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 12/221 (5%)
 Frame = +3

Query: 339 DVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPV 494
           D  +G  ++  RGH G V + +F  +++ +LS S D S+R WD  S            PV
Sbjct: 328 DDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPV 387

Query: 495 QTLDEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDG 665
             LD +   +     S D      S D   R Y LR+      Y G  + + C  F  + 
Sbjct: 388 WDLDISPYSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNS 438

Query: 666 QCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
                 S D T+RL     G  +  +TGH+     L    S    ++ S  ED ++  WD
Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGP--VLSLAFSPNGKYLASAGEDQRLKLWD 496

Query: 846 XXXXXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965
                             SL + P    + +  M  SV+ W
Sbjct: 497 LASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVW 537



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
 Frame = +3

Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308
           +G V ++ F+ +G Y  + G D+ LKLW+   GTL +   GH   +     S D+  + S
Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIAS 527

Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437
              D +V +WD+           +S ++V  + G    V +VQF     ++++G
Sbjct: 528 ASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTG 581


>ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 62/207 (29%), Positives = 86/207 (41%)
 Frame = +3

Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311
           G V+  RF+ DG+   +   D T++LW+  R   LR   GH   V   + S D+  L SG
Sbjct: 64  GPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASG 123

Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491
           G DK V+LWDV SGQ++R   GH   + +  F+     + +GS DS+VR WD R   P  
Sbjct: 124 GWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTP-- 181

Query: 492 VQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQC 671
                             H+ L G                        I+C C+S  G  
Sbjct: 182 ---------------AVSHQALEGH--------------------SGNISCLCYSASG-L 205

Query: 672 TLVSSLDSTLRLLDKDTGELLGEYTGH 752
               S D T+ +    T  LL +  GH
Sbjct: 206 LASGSWDKTIHIWKPTTSSLLIQLKGH 232



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGS-DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 287
           + L+   G +  + ++  G   L  GS DKT+ +W P   +LL    GH   V   A S 
Sbjct: 186 QALEGHSGNISCLCYSASG--LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243

Query: 288 DNSSLCSGGGDKAVVLWDVASGQVVRKFR-GHAGKVNTVQFNEEATVILSGSIDSSVRCW 464
           D   L S G  + V +WD  +G+ +   + G     +T  F  +  +++SG+ D + R  
Sbjct: 244 DELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQI 303

Query: 465 DCRSRKPEPVQT 500
              S+ P   QT
Sbjct: 304 SRTSKSPRDPQT 315



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 3/141 (2%)
 Frame = +3

Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTG 725
           +L GS DG V  ++ R GQL     G   P+    FS DG     +S D T+RL D    
Sbjct: 36  LLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARA 95

Query: 726 ELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSL 905
           + L    GH+     +    S     + S   D +V  WD                 QS 
Sbjct: 96  KCLRVLKGHQRSVETVS--FSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSS 153

Query: 906 GYHPTEPCLLTGMGGS-VQCW 965
            + PT  CL TG   S V+ W
Sbjct: 154 DFSPTVNCLATGSWDSTVRIW 174


>ref|NP_000421.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Homo sapiens]
          Length = 410

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,960,767
Number of Sequences: 39411
Number of extensions: 1280521
Number of successful extensions: 8155
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7425
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 3026015740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611C-008095
         (968 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080675.2| mitogen-activated protein kinase organizer 1 [M...   568   e-162
Alignment   gi|NP_543124.1| WD repeat domain 5 [Mus musculus]                    149   6e-36
Alignment   gi|NP_081389.1| WD repeat domain 5B [Mus musculus]                   146   3e-35
Alignment   gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei...    99   9e-21
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate...    92   8e-19
Alignment   gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso...    91   2e-18
Alignment   gi|XP_987745.1| PREDICTED: similar to platelet-activating facto...    91   2e-18
Alignment   gi|NP_536353.2| F-box and WD-40 domain protein 7, archipelago h...    89   7e-18
Alignment   gi|NP_034443.1| guanine nucleotide-binding protein, beta-5 subu...    89   9e-18
Alignment   gi|NP_619733.1| guanine nucleotide-binding protein, beta-5 subu...    89   9e-18

>ref|NP_080675.2| mitogen-activated protein kinase organizer 1 [Mus musculus]
          Length = 315

 Score =  568 bits (1465), Expect = e-162
 Identities = 271/304 (89%), Positives = 278/304 (91%)
 Frame = +3

Query: 57  MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 236
           MAFPEPKPR PELPQKR+KTLDC QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL
Sbjct: 1   MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLL 60

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           RTYSGHGYEVLDAAGSFDNS LCSGGGDK VVLWDVA+GQVVRKFRGHAGKVNTVQFNEE
Sbjct: 61  RTYSGHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEE 120

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
           ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE+LAGSVDGRVRRYDL
Sbjct: 121 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL 180

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
           RMGQ+ SDYVGSPITCTCFSRDGQCTL+SSLDSTLRLLDKDTGELLGEY GHKNQ+YKLD
Sbjct: 181 RMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLD 240

Query: 777 CCLSERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTGMGGSV 956
           CCLSERDTHVVSCSEDGKVFFWD                 QSL YHPTEPCLLT MGGS+
Sbjct: 241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAMGGSI 300

Query: 957 QCWR 968
           Q WR
Sbjct: 301 QYWR 304


>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
          Length = 334

 Score =  149 bits (375), Expect = 6e-36
 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 7/299 (2%)
 Frame = +3

Query: 48  PSAMAFPEPKPRGPELPQKRLK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLR 224
           PS+ A  + KP  P  P   LK TL     AV +V+F+ +G +  +  +DK +K+W    
Sbjct: 19  PSSSA-TQSKPT-PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           G   +T SGH   + D A S D++ L S   DK + +WDV+SG+ ++  +GH+  V    
Sbjct: 77  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVS--DHEVLAGSVDGR 578
           FN ++ +I+SGS D SVR WD ++ K   ++TL    D +S+V  +     +++ S DG 
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

Query: 579 VRRYDLRMGQLFSDYV---GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTG 749
            R +D   GQ     +     P++   FS +G+  L ++LD+TL+L D   G+ L  YTG
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254

Query: 750 HKNQEYKLDCCLS-ERDTHVVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923
           HKN++Y +    S      +VS SED  V+ W+                  S   HPTE
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
 Frame = +3

Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284
           LKTL D     V  V+F+ +G Y L    D TLKLW+  +G  L+TY+GH  E      +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449
           F  +    + SG  D  V +W++ + ++V+K +GH   V +   +    +I S ++  D 
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 450 SVRCW--DC 470
           +++ W  DC
Sbjct: 326 TIKLWKSDC 334


>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
          Length = 328

 Score =  146 bits (369), Expect = 3e-35
 Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 11/293 (3%)
 Frame = +3

Query: 78  PRGPELPQK-----RLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRT 242
           PR  E PQK     RL TL     A+ +V+F+ +G +  +  +D  + +W    G   +T
Sbjct: 18  PRREEEPQKPNYALRL-TLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKT 76

Query: 243 YSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEAT 422
             GH  E+ D A S D+S L S   DK + +WD+ SG+ ++  +GH+  V    FN  + 
Sbjct: 77  LYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSN 136

Query: 423 VILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE--VLAGSVDGRVRRYDL 596
           +I+SGS D SV+ W+ ++ K   ++TL    D IS+V  + +   +++GS DG  R +D 
Sbjct: 137 LIVSGSFDESVKIWEVKTGK--CLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDA 194

Query: 597 RMGQ---LFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEY 767
             GQ     +D    P++   FS +G+  L ++LD+TL+L D   G  L  YTGHKN++Y
Sbjct: 195 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY 254

Query: 768 KLDCCLSERDTH-VVSCSEDGKVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTE 923
            L    S      VVS SED  V+ W+                  S   HPT+
Sbjct: 255 CLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK 307



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
 Frame = +3

Query: 108 LKTL-DCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGS 284
           L+TL D G   V  V+F+ +G Y LT   D TLKLW+  RG  L+TY+GH  E      S
Sbjct: 200 LRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFAS 259

Query: 285 FDNSS---LCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSI--DS 449
           F  +    + SG  D  V +W++ + ++V++ +GH   V +   +    +I S ++  D 
Sbjct: 260 FSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDK 319

Query: 450 SVRCW--DC 470
           +++ W  DC
Sbjct: 320 TIKVWSSDC 328


>ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated
            factor, 100kDa [Mus musculus]
          Length = 801

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
 Frame = +3

Query: 90   ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 269
            E     LK L    G V    F+ D NY L+   D T++LW+    T L  Y GH Y V 
Sbjct: 531  EKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 590

Query: 270  DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 449
            D   S       SGG D+   LW     Q +R F GH   VN  +F+  +  + +GS D 
Sbjct: 591  DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 650

Query: 450  SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 629
            +VR WD  +     + T  +      +   +   +  G+ DGRV  +D+  G +  +  G
Sbjct: 651  TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 710

Query: 630  SPIT-CTC-FSRDGQCTLVSSLDSTLRLLD 713
               T C+  FSRDG+     S+D+T+RL D
Sbjct: 711  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 740


>ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor
           (PCAF)-associated factor [Mus musculus]
          Length = 589

 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 43/113 (38%), Positives = 71/113 (62%)
 Frame = +3

Query: 138 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGG 317
           V  V+F+ + NY  T  +DKT++LW+  +G  +R ++GH   VL  + S +   L S G 
Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE 488

Query: 318 DKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS 476
           D+ + LWD+ASG + ++ RGH   + ++ F+ ++ +I S S+D+SVR WD RS
Sbjct: 489 DQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541



 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
 Frame = +3

Query: 132 GAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSG 311
           G V + RF  D +  L+C  D +++ W+    T    Y GH Y V D   S  +    SG
Sbjct: 343 GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASG 402

Query: 312 GGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEP 491
             D+   LW       +R + GH   V+ V+F+  +  + +GS D +VR W   +++   
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS--AQQGNS 460

Query: 492 VQTLDEARDGISSVKVSDHEVLAGSV--DGRVRRYDLRMGQLFSDYVG--SPITCTCFSR 659
           V+     R  + S+  S +     S   D R++ +DL  G LF +  G    IT   FS 
Sbjct: 461 VRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSP 520

Query: 660 DGQCTLVSSLDSTLRL-----------LDKDTGELLGEYTG 749
           D      +S+D+++R+            D  +GEL+G YTG
Sbjct: 521 DSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTG 561



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 3/210 (1%)
 Frame = +3

Query: 225 GTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQ 404
           GT ++   GH   V       D+S L S   D ++  WD+ S      ++GHA  V  V 
Sbjct: 332 GTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVD 391

Query: 405 FNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVR 584
            +  +    SGS D + R W      P  +     A         + + +  GS D  VR
Sbjct: 392 ISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVR 451

Query: 585 RYDLRMG---QLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHK 755
            +  + G   +LF+ + G P+    FS +G+    +  D  L+L D  +G L  E  GH 
Sbjct: 452 LWSAQQGNSVRLFTGHRG-PVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHT 510

Query: 756 NQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           +    L    S     + S S D  V  WD
Sbjct: 511 DSITSL--AFSPDSGLIASASMDNSVRVWD 538



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
 Frame = +3

Query: 129 QGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCS 308
           +G V ++ F+ +G Y  + G D+ LKLW+   GTL +   GH   +   A S D+  + S
Sbjct: 468 RGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIAS 527

Query: 309 GGGDKAVVLWDV-----------ASGQVVRKFRGHAGKVNTVQFNEEATVILSG 437
              D +V +WD+           +SG++V  + G    V +VQF     ++++G
Sbjct: 528 ASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTG 581



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 12/218 (5%)
 Frame = +3

Query: 348 SGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRS--------RKPEPVQTL 503
           +G  ++  RGH G V + +F  +++ +LS S D S+R WD  S            PV  +
Sbjct: 331 TGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDV 390

Query: 504 DEARDGISSVKVS-DHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCT 674
           D +   +     S D      S D   R Y LR+      Y G  + + C  F  +    
Sbjct: 391 DISPFSLYFASGSHDRTARLWSFD---RTYPLRI------YAGHLADVDCVKFHPNSNYL 441

Query: 675 LVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDXXX 854
              S D T+RL     G  +  +TGH+     L    S    ++ S  ED ++  WD   
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLS--FSPNGKYLASAGEDQRLKLWDLAS 499

Query: 855 XXXXXXXXXXXXXXQSLGYHPTEPCLLT-GMGGSVQCW 965
                          SL + P    + +  M  SV+ W
Sbjct: 500 GTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVW 537


>ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1
           subunit [Mus musculus]
          Length = 410

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 264 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 307

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 308 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 360

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit [Mus musculus]
          Length = 312

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
 Frame = +3

Query: 111 KTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFD 290
           +TL     +V+ + F+  G    +C +D T+KLW+      +RT  GH + V   A   +
Sbjct: 46  RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 105

Query: 291 NSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDC 470
              + S   DK + +W+V +G  V+ F GH   V  V+ N++ T+I S S D +VR W  
Sbjct: 106 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 165

Query: 471 RSRK-PEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCT 647
            +++    ++  +   + IS    S +  ++ +     ++             G P    
Sbjct: 166 ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK------------SGKP---- 209

Query: 648 CFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDG 827
                G   L  S D T+++ D  TG  L    GH N  +            ++SC++D 
Sbjct: 210 -----GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK 262

Query: 828 KVFFWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG-MGGSVQCW 965
            +  WD                  SL +H T P ++TG +  +V+ W
Sbjct: 263 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 309



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           G + L+   DKT+K+W+   G  L T  GH   V           + S   DK + +WD 
Sbjct: 210 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 269

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCR 473
            + + ++    H   V ++ F++ A  +++GS+D +V+ W+CR
Sbjct: 270 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 312


>ref|NP_536353.2| F-box and WD-40 domain protein 7, archipelago homolog [Mus musculus]
          Length = 629

 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 65/248 (26%), Positives = 108/248 (43%)
 Frame = +3

Query: 102  KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 281
            K L+TL    G V + +     N  ++  +D+TLK+WN   G  + T  GH   V     
Sbjct: 334  KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCM 389

Query: 282  SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRC 461
                  + SG  D  + +WD+ +GQ +    GH   V  VQ++    V  SG+ D  V+ 
Sbjct: 390  HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKV 447

Query: 462  WDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPIT 641
            WD  +     + TL    + + S++     V++GS+D  +R +D+  G       G    
Sbjct: 448  WDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 505

Query: 642  CTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSE 821
             +         +  + DST+++ D  TG+ L    G    +  +  CL      V++ S+
Sbjct: 506  TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAV-TCLQFNKNFVITSSD 564

Query: 822  DGKVFFWD 845
            DG V  WD
Sbjct: 565  DGTVKLWD 572



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 3/230 (1%)
 Frame = +3

Query: 165 GNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDV 344
           GN  ++   D TLK+W+ + G  LRT  GH   V   +    ++ + SG  D+ + +W+ 
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNA 370

Query: 345 ASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGI 524
            +G+ +    GH   V  +  +E+   ++SGS D+++R WD      E  Q L      +
Sbjct: 371 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI-----ETGQCLHVLMGHV 423

Query: 525 SSVKVSDHE---VLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDS 695
           ++V+   ++   V++G+ D  V+ +D           G          DG   +  SLD+
Sbjct: 424 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 483

Query: 696 TLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD 845
           ++R+ D +TG  +   TGH++    L   +  +D  +VS + D  V  WD
Sbjct: 484 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWD 529



 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
 Frame = +3

Query: 192 DKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKF 371
           D TL++W+   G  L    GH   V      +D   + SG  D  V +WD  +   +   
Sbjct: 402 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 459

Query: 372 RGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHE 551
           +GH  +V ++QF  +   ++SGS+D+S+R WD  +     + TL   +   S +++ D+ 
Sbjct: 460 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKDNI 515

Query: 552 VLAGSVDGRVRRYDLRMGQLFSDYVG-----SPITCTCFSRDGQCTLVSSLDSTLRLLDK 716
           +++G+ D  V+ +D++ GQ      G     S +TC  F+++    + SS D T++L D 
Sbjct: 516 LVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 573

Query: 717 DTGELL 734
            TGE +
Sbjct: 574 KTGEFI 579



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 53/203 (26%), Positives = 91/203 (44%)
 Frame = +3

Query: 237 RTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEE 416
           +   GH   V+     F  + + SG  D  + +W   +G+ +R   GH G V + Q  + 
Sbjct: 296 KVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 354

Query: 417 ATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL 596
             +I+SGS D +++ W+  +   E + TL      +  + + +  V++GS D  +R +D+
Sbjct: 355 --IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 410

Query: 597 RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLD 776
             GQ     +G      C   DG+  +  + D  +++ D +T   L    GH N+ Y L 
Sbjct: 411 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 470

Query: 777 CCLSERDTHVVSCSEDGKVFFWD 845
                   HVVS S D  +  WD
Sbjct: 471 F----DGIHVVSGSLDTSIRVWD 489


>ref|NP_034443.1| guanine nucleotide-binding protein, beta-5 subunit isoform 1 [Mus
           musculus]
          Length = 395

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
 Frame = +3

Query: 177 LTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL--DAAGSFDNSSLCSGGGDKAVVLWDVAS 350
           LT   D T  LW+   G LL+++ GHG +VL  D A S   ++  SGG DK  ++WD+ S
Sbjct: 211 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 270

Query: 351 GQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISS 530
           GQ V+ F  H   VN+V++        SGS D++ R +D R+ +   + + +    G SS
Sbjct: 271 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 330

Query: 531 V--KVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDST 698
           V   +S   + AG  D  +  +D+  G   S   G  + ++    S DG      S D T
Sbjct: 331 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 390

Query: 699 LRL 707
           LR+
Sbjct: 391 LRV 393



 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
 Frame = +3

Query: 273 AAGSFDNSSL--CSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQF--NEEATVILSGS 440
           +A SF NS +   +  GD    LWDV SGQ+++ F GH   V  +    +E     +SG 
Sbjct: 199 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 258

Query: 441 IDSSVRCWDCRSRKPEPVQTLDEARDGISSVKV--SDHEVLAGSVDGRVRRYDLRMGQLF 614
            D     WD RS   + VQ  +     ++SV+   S     +GS D   R YDLR  +  
Sbjct: 259 CDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 316

Query: 615 SDYVGSPI----TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQ 761
           + Y    I    +   FS  G+       D T+ + D   G  +    GH+N+
Sbjct: 317 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 369



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
 Frame = +3

Query: 345 ASGQVVRKFR----GHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512
           A GQ V K R    GH  KV  + + ++   I+S S D  V  WD  +   E   T+   
Sbjct: 89  ALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT 148

Query: 513 RDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQ------------LFSDYVGSPITCTCFS 656
                +   S   +  G +D +   Y L   +            + ++Y+ +   C+  +
Sbjct: 149 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---CSFTN 205

Query: 657 RDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVF 836
            D Q  L +S D T  L D ++G+LL  + GH      LD   SE     VS   D K  
Sbjct: 206 SDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 264

Query: 837 FWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941
            WD                  S+ Y+P+     +G
Sbjct: 265 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 299


>ref|NP_619733.1| guanine nucleotide-binding protein, beta-5 subunit isoform 2 [Mus
           musculus]
          Length = 353

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
 Frame = +3

Query: 177 LTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL--DAAGSFDNSSLCSGGGDKAVVLWDVAS 350
           LT   D T  LW+   G LL+++ GHG +VL  D A S   ++  SGG DK  ++WD+ S
Sbjct: 169 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 228

Query: 351 GQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISS 530
           GQ V+ F  H   VN+V++        SGS D++ R +D R+ +   + + +    G SS
Sbjct: 229 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 288

Query: 531 V--KVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG--SPITCTCFSRDGQCTLVSSLDST 698
           V   +S   + AG  D  +  +D+  G   S   G  + ++    S DG      S D T
Sbjct: 289 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 348

Query: 699 LRL 707
           LR+
Sbjct: 349 LRV 351



 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
 Frame = +3

Query: 273 AAGSFDNSSL--CSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQF--NEEATVILSGS 440
           +A SF NS +   +  GD    LWDV SGQ+++ F GH   V  +    +E     +SG 
Sbjct: 157 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 216

Query: 441 IDSSVRCWDCRSRKPEPVQTLDEARDGISSVKV--SDHEVLAGSVDGRVRRYDLRMGQLF 614
            D     WD RS   + VQ  +     ++SV+   S     +GS D   R YDLR  +  
Sbjct: 217 CDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 274

Query: 615 SDYVGSPI----TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQ 761
           + Y    I    +   FS  G+       D T+ + D   G  +    GH+N+
Sbjct: 275 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 327



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
 Frame = +3

Query: 345 ASGQVVRKFR----GHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEA 512
           A GQ V K R    GH  KV  + + ++   I+S S D  V  WD  +   E   T+   
Sbjct: 47  ALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT 106

Query: 513 RDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQ------------LFSDYVGSPITCTCFS 656
                +   S   +  G +D +   Y L   +            + ++Y+ +   C+  +
Sbjct: 107 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---CSFTN 163

Query: 657 RDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVF 836
            D Q  L +S D T  L D ++G+LL  + GH      LD   SE     VS   D K  
Sbjct: 164 SDMQI-LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 222

Query: 837 FWDXXXXXXXXXXXXXXXXXQSLGYHPTEPCLLTG 941
            WD                  S+ Y+P+     +G
Sbjct: 223 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 257


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,461,532
Number of Sequences: 45328
Number of extensions: 1432883
Number of successful extensions: 9144
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8442
length of database: 21,768,885
effective HSP length: 104
effective length of database: 17,054,773
effective search space used: 3717940514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)