BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-008176
(1543 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,366,013
Number of Sequences: 1040
Number of extensions: 33013
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 434,620
effective HSP length: 81
effective length of database: 350,380
effective search space used: 151364160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-008176
(1543 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_580391.2| PREDICTED: similar to exportin 5, partial [Bos ... 885 0.0
>ref|XP_580391.2| PREDICTED: similar to exportin 5, partial [Bos taurus]
Length = 1164
Score = 885 bits (2287), Expect(2) = 0.0
Identities = 442/500 (88%), Positives = 465/500 (93%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
VELDTLS+QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNME+IFSFLLNT
Sbjct: 102 VELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT 161
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKYQQVKTDN+QESKAQA CRV +AALNTLAGY DWV +SH+TAENCK
Sbjct: 162 LQENVNKYQQVKTDNSQESKAQANCRVGVAALNTLAGYIDWVPMSHVTAENCKLLEVLCL 221
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRKPLM+LFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 222 LLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 281
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
VFLKRLCQVL ALG+QLCALLG DSDVE PANFGKYLESFLAFTTHPSQFLRSSTQMTWG
Sbjct: 282 VFLKRLCQVLRALGNQLCALLGVDSDVEIPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 341
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHE+LSRDPLLLAIIPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 342 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 401
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKSGSGESGLCSIFSPSF 1122
NSSRAQQGEV+RLACRLDPKTSFQMAGEWLKYQLS +ID GSM SG+GES LCSIFSPSF
Sbjct: 402 NSSRAQQGEVIRLACRLDPKTSFQMAGEWLKYQLSTSIDPGSMNSGTGESSLCSIFSPSF 461
Query: 1123 VQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNVSALF 1302
VQWEAMTFF+E V+N+MFRT+DKEEIPV DG+ELLQMVLNF+TKDPLILSCVLTNVSALF
Sbjct: 462 VQWEAMTFFLESVINQMFRTLDKEEIPVTDGVELLQMVLNFDTKDPLILSCVLTNVSALF 521
Query: 1303 SFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 1482
FVT+RPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL
Sbjct: 522 PFVTYRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 581
Query: 1483 PNFDMLYDHVKQLLSXELLL 1542
P+FDMLY+HVKQLLS ELLL
Sbjct: 582 PSFDMLYNHVKQLLSNELLL 601
Score = 33.9 bits (76), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 IKREWPQHWPHML 41
IKREWPQHWP ML
Sbjct: 89 IKREWPQHWPDML 101
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,921,322
Number of Sequences: 33508
Number of extensions: 1203128
Number of successful extensions: 3114
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 2856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3113
length of database: 16,112,626
effective HSP length: 106
effective length of database: 12,560,778
effective search space used: 5112236646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-008176
(1543 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532148.2| PREDICTED: similar to exportin 5 isoform 2 [Can... 891 0.0
Alignment gi|XP_852453.1| PREDICTED: similar to exportin 5 isoform 3 [Can... 891 0.0
Alignment gi|XP_865768.1| PREDICTED: similar to exportin 5 isoform 5 [Can... 891 0.0
>ref|XP_532148.2| PREDICTED: similar to exportin 5 isoform 2 [Canis familiaris]
Length = 1211
Score = 891 bits (2303), Expect(2) = 0.0
Identities = 444/500 (88%), Positives = 466/500 (93%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
+ELDTLS+QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT
Sbjct: 137 IELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 196
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKY+QVKTDN+QESKAQA CRV IAALNTLAGY DWVS+SHITAENCK
Sbjct: 197 LQENVNKYRQVKTDNSQESKAQANCRVGIAALNTLAGYIDWVSMSHITAENCKLLEMLCL 256
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRKPLM+LFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 257 LLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 316
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
VFLKRLCQVLCALG+QLCALLG DSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG
Sbjct: 317 VFLKRLCQVLCALGNQLCALLGVDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 376
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHE+LSRDPLLLAIIPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 436
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKSGSGESGLCSIFSPSF 1122
NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS ++DTGS+ SG+GE GLCSIFS SF
Sbjct: 437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTSVDTGSVNSGTGEGGLCSIFSSSF 496
Query: 1123 VQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNVSALF 1302
VQWEAMTFF+E V+N+MFRT+DKE +PVNDGIELLQMVLNF+TKDPLILSCVLTNVSALF
Sbjct: 497 VQWEAMTFFLESVINQMFRTLDKEAVPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 556
Query: 1303 SFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 1482
FVT+RPEFLPQVFSKLFSSVTFE VEESKAPRTRAVRNVRRHACSSIIK CRDYPQLVL
Sbjct: 557 PFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKTCRDYPQLVL 616
Query: 1483 PNFDMLYDHVKQLLSXELLL 1542
PNFDMLY+HVKQLLS ELLL
Sbjct: 617 PNFDMLYNHVKQLLSNELLL 636
Score = 33.9 bits (76), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 IKREWPQHWPHML 41
IKREWPQHWP ML
Sbjct: 124 IKREWPQHWPDML 136
>ref|XP_852453.1| PREDICTED: similar to exportin 5 isoform 3 [Canis familiaris]
Length = 1200
Score = 891 bits (2303), Expect(2) = 0.0
Identities = 444/500 (88%), Positives = 466/500 (93%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
+ELDTLS+QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT
Sbjct: 137 IELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 196
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKY+QVKTDN+QESKAQA CRV IAALNTLAGY DWVS+SHITAENCK
Sbjct: 197 LQENVNKYRQVKTDNSQESKAQANCRVGIAALNTLAGYIDWVSMSHITAENCKLLEMLCL 256
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRKPLM+LFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 257 LLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 316
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
VFLKRLCQVLCALG+QLCALLG DSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG
Sbjct: 317 VFLKRLCQVLCALGNQLCALLGVDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 376
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHE+LSRDPLLLAIIPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 436
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKSGSGESGLCSIFSPSF 1122
NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS ++DTGS+ SG+GE GLCSIFS SF
Sbjct: 437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTSVDTGSVNSGTGEGGLCSIFSSSF 496
Query: 1123 VQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNVSALF 1302
VQWEAMTFF+E V+N+MFRT+DKE +PVNDGIELLQMVLNF+TKDPLILSCVLTNVSALF
Sbjct: 497 VQWEAMTFFLESVINQMFRTLDKEAVPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 556
Query: 1303 SFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 1482
FVT+RPEFLPQVFSKLFSSVTFE VEESKAPRTRAVRNVRRHACSSIIK CRDYPQLVL
Sbjct: 557 PFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKTCRDYPQLVL 616
Query: 1483 PNFDMLYDHVKQLLSXELLL 1542
PNFDMLY+HVKQLLS ELLL
Sbjct: 617 PNFDMLYNHVKQLLSNELLL 636
Score = 33.9 bits (76), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 IKREWPQHWPHML 41
IKREWPQHWP ML
Sbjct: 124 IKREWPQHWPDML 136
>ref|XP_865768.1| PREDICTED: similar to exportin 5 isoform 5 [Canis familiaris]
Length = 1063
Score = 891 bits (2303), Expect(2) = 0.0
Identities = 444/500 (88%), Positives = 466/500 (93%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
+ELDTLS+QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT
Sbjct: 137 IELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 196
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKY+QVKTDN+QESKAQA CRV IAALNTLAGY DWVS+SHITAENCK
Sbjct: 197 LQENVNKYRQVKTDNSQESKAQANCRVGIAALNTLAGYIDWVSMSHITAENCKLLEMLCL 256
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRKPLM+LFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 257 LLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 316
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
VFLKRLCQVLCALG+QLCALLG DSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG
Sbjct: 317 VFLKRLCQVLCALGNQLCALLGVDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 376
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHE+LSRDPLLLAIIPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 436
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKSGSGESGLCSIFSPSF 1122
NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS ++DTGS+ SG+GE GLCSIFS SF
Sbjct: 437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTSVDTGSVNSGTGEGGLCSIFSSSF 496
Query: 1123 VQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNVSALF 1302
VQWEAMTFF+E V+N+MFRT+DKE +PVNDGIELLQMVLNF+TKDPLILSCVLTNVSALF
Sbjct: 497 VQWEAMTFFLESVINQMFRTLDKEAVPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 556
Query: 1303 SFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 1482
FVT+RPEFLPQVFSKLFSSVTFE VEESKAPRTRAVRNVRRHACSSIIK CRDYPQLVL
Sbjct: 557 PFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKTCRDYPQLVL 616
Query: 1483 PNFDMLYDHVKQLLSXELLL 1542
PNFDMLY+HVKQLLS ELLL
Sbjct: 617 PNFDMLYNHVKQLLSNELLL 636
Score = 33.9 bits (76), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 IKREWPQHWPHML 41
IKREWPQHWP ML
Sbjct: 124 IKREWPQHWPDML 136
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,602,887
Number of Sequences: 33732
Number of extensions: 1406000
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 6356839846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-008176
(1543 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065801.1| exportin 5 [Homo sapiens] 877 0.0
>ref|NP_065801.1| exportin 5 [Homo sapiens]
Length = 1204
Score = 877 bits (2265), Expect(2) = 0.0
Identities = 438/504 (86%), Positives = 463/504 (91%), Gaps = 4/504 (0%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
+ELDTLS+QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNME+IFSFLLNT
Sbjct: 137 IELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT 196
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKYQQVKTD +QESKAQA CRV +AALNTLAGY DWVS+SHITAENCK
Sbjct: 197 LQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCL 256
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRKPLM+LFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 257 LLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 316
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
VFLKRLCQVLCALG+QLCALLG DSDVETP+NFGKYLESFLAFTTHPSQFLRSSTQMTWG
Sbjct: 317 VFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWG 376
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHE+LSRDPLLLAIIPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 436
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKS----GSGESGLCSIF 1110
NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS +D GS+ S G+GE LCS+F
Sbjct: 437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVF 496
Query: 1111 SPSFVQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNV 1290
SPSFVQWEAMT F+E V+ +MFRT+++EEIPVNDGIELLQMVLNF+TKDPLILSCVLTNV
Sbjct: 497 SPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNV 556
Query: 1291 SALFSFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 1470
SALF FVT+RPEFLPQVFSKLFSSVTFE VEESKAPRTRAVRNVRRHACSSIIKMCRDYP
Sbjct: 557 SALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 616
Query: 1471 QLVLPNFDMLYDHVKQLLSXELLL 1542
QLVLPNFDMLY+HVKQLLS ELLL
Sbjct: 617 QLVLPNFDMLYNHVKQLLSNELLL 640
Score = 33.9 bits (76), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 IKREWPQHWPHML 41
IKREWPQHWP ML
Sbjct: 124 IKREWPQHWPDML 136
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,176,182
Number of Sequences: 39411
Number of extensions: 1374491
Number of successful extensions: 3519
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3517
length of database: 17,774,539
effective HSP length: 106
effective length of database: 13,596,973
effective search space used: 5533968011
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-008176
(1543 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082474.1| exportin 5 [Mus musculus] 824 0.0
>ref|NP_082474.1| exportin 5 [Mus musculus]
Length = 1204
Score = 824 bits (2128), Expect = 0.0
Identities = 412/504 (81%), Positives = 447/504 (88%), Gaps = 4/504 (0%)
Frame = +1
Query: 43 VELDTLSRQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMEKIFSFLLNT 222
+ELDTL RQGETQ ELVMFILLRLAEDVVTFQTLP QRRRDIQQTLTQNME+I +FLLNT
Sbjct: 137 MELDTLFRQGETQRELVMFILLRLAEDVVTFQTLPTQRRRDIQQTLTQNMERILNFLLNT 196
Query: 223 LQENVNKYQQVKTDNAQESKAQAYCRVAIAALNTLAGYTDWVSLSHITAENCKXXXXXXX 402
LQENVNKYQQ+KTD++QE++AQA CRV++AALNTLAGY DWVSL+HITAENCK
Sbjct: 197 LQENVNKYQQMKTDSSQEAEAQANCRVSVAALNTLAGYIDWVSLNHITAENCKLVETLCL 256
Query: 403 XXXXXXXXXGAAECLLIAVSRKGKLEDRKPLMILFGDAVMHYMLSAAQTADGGGLVEKHY 582
GAAECLLIAVSRKGKLEDRK LMILFGD MHY+LSAAQTADGGGLVEKHY
Sbjct: 257 LLNEQELQLGAAECLLIAVSRKGKLEDRKRLMILFGDVAMHYILSAAQTADGGGLVEKHY 316
Query: 583 VFLKRLCQVLCALGSQLCALLGPDSDVETPANFGKYLESFLAFTTHPSQFLRSSTQMTWG 762
+FLKRLCQVLCALG+ LCALL D++++TP NFG YLESFLAFTTHPSQFLRSST MTWG
Sbjct: 317 LFLKRLCQVLCALGNLLCALLALDANIQTPINFGMYLESFLAFTTHPSQFLRSSTHMTWG 376
Query: 763 ALFRHEVLSRDPLLLAIIPKYLRACMTNLVKMGFPSKTDNPSCEYSRLDFDSDEDFNAFF 942
ALFRHEVLSRDP LLA+IPKYLRA MTNLVKMGFPSKTD+PSCEYSR DFDSDEDFNAFF
Sbjct: 377 ALFRHEVLSRDPALLAVIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFF 436
Query: 943 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSAAIDTGSMKS----GSGESGLCSIF 1110
NSSRAQ GEV+R CRLDPKTSFQMA EWLKYQLSA+IDTG + S G+GE G CSIF
Sbjct: 437 NSSRAQHGEVVRCVCRLDPKTSFQMAAEWLKYQLSASIDTGPVNSCSTAGTGEGGFCSIF 496
Query: 1111 SPSFVQWEAMTFFVEGVVNRMFRTVDKEEIPVNDGIELLQMVLNFETKDPLILSCVLTNV 1290
SPS+VQWEAMTFF+E V+N+MFRT+DKEE+PV+DGIELLQ+VLNFE KDPL+LSCVLTNV
Sbjct: 497 SPSYVQWEAMTFFLESVINQMFRTLDKEELPVSDGIELLQLVLNFEIKDPLVLSCVLTNV 556
Query: 1291 SALFSFVTFRPEFLPQVFSKLFSSVTFEIVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 1470
SALF FVT++P FLPQVFSKLFS VTFE V ESKAPRTRAVRNVRRHACSSI KMCRDYP
Sbjct: 557 SALFPFVTYKPAFLPQVFSKLFSFVTFESVGESKAPRTRAVRNVRRHACSSINKMCRDYP 616
Query: 1471 QLVLPNFDMLYDHVKQLLSXELLL 1542
LVLPNFDMLY HVKQLLS ELLL
Sbjct: 617 DLVLPNFDMLYSHVKQLLSNELLL 640
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,710,019
Number of Sequences: 45328
Number of extensions: 1636314
Number of successful extensions: 4569
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 4029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4561
length of database: 21,768,885
effective HSP length: 108
effective length of database: 16,873,461
effective search space used: 6833751705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)