BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-000134 (1032 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_582303.1| PREDICTED: similar to CG14407-PA [Bos taurus] 199 3e-51 Alignment gi|NP_001030273.1| thioredoxin-like [Bos taurus] 87 2e-17 Alignment gi|XP_583096.1| PREDICTED: hypothetical protein XP_583096 [Bos ... 72 9e-13 Alignment gi|XP_873370.1| PREDICTED: similar to Thioredoxin-like protein ... 59 5e-09 >ref|XP_582303.1| PREDICTED: similar to CG14407-PA [Bos taurus] Length = 158 Score = 199 bits (506), Expect = 3e-51 Identities = 95/98 (96%), Positives = 96/98 (97%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV Sbjct: 61 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 120 Query: 394 GGCDILLQMHQNGDLVEELKKLGIRSALLDEKTDQDSK 507 GGCDILLQMHQNGDLVEELKKLGIRSALLD+ DQDSK Sbjct: 121 GGCDILLQMHQNGDLVEELKKLGIRSALLDDTKDQDSK 158 >ref|NP_001030273.1| thioredoxin-like [Bos taurus] Length = 334 Score = 87.0 bits (214), Expect = 2e-17 Identities = 36/80 (45%), Positives = 59/80 (73%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 G ++ +CGFS +++IL G+ +Y +++L+D ++RQG+K YSNWPT PQ+Y+ GE V Sbjct: 253 GNKQEAKCGFSRQILEILNSTGI-EYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 311 Query: 394 GGCDILLQMHQNGDLVEELK 453 GG DI+ ++ +NG+L+ LK Sbjct: 312 GGLDIVKELKENGELLPILK 331 Score = 84.7 bits (208), Expect = 1e-16 Identities = 32/75 (42%), Positives = 58/75 (77%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YS+WPT PQ+Y++GE + Sbjct: 151 GTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTYSSWPTYPQLYVSGELI 209 Query: 394 GGCDILLQMHQNGDL 438 GG DI+ ++ + +L Sbjct: 210 GGLDIIKELEASKEL 224 >ref|XP_583096.1| PREDICTED: hypothetical protein XP_583096 [Bos taurus] Length = 254 Score = 71.6 bits (174), Expect = 9e-13 Identities = 54/133 (40%), Positives = 58/133 (43%) Frame = -1 Query: 399 APHELAVEVHLRDGGPVGIVFNALPELXXXXXXXXXXXXXXXQPQDLHHGVAEATLGLLW 220 A H LAVEVHLRD G IVFN L EL + QDLHHGVAEATLG Sbjct: 119 ALHGLAVEVHLRDSG---IVFNTLLELAVVQHVVGQVVTDAVELQDLHHGVAEATLGCSG 175 Query: 219 RPLEEDHHLVLLHQRVQMLXXXXXXXXXXXXXRDPQTTAYAAPPAEQSRRRPAQGRAHPR 40 P + L + +D Q AP EQS AQG AHPR Sbjct: 176 VPPRKSTTLSFFTNASRCSQEPLPPKRSAPHAQDLQAATCTAPTVEQSCCHLAQGPAHPR 235 Query: 39 TLAGALDSSGPEL 1 LA AL P L Sbjct: 236 VLARALGPWRPAL 248 Score = 55.5 bits (132), Expect = 7e-08 Identities = 24/30 (80%), Positives = 27/30 (90%) Frame = -2 Query: 230 GCSGVPLRKTTTLSFFTSVSRCSAEPLPPE 141 GCSGVP RK+TTLSFFT+ SRCS EPLPP+ Sbjct: 172 GCSGVPPRKSTTLSFFTNASRCSQEPLPPK 201 >ref|XP_873370.1| PREDICTED: similar to Thioredoxin-like protein 2 (PKC-interacting cousin of thioredoxin) (PKC-theta-interacting protein) (PKCq-interacting protein) (HUSSY-22) [Bos taurus] Length = 164 Score = 59.3 bits (142), Expect = 5e-09 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTP++P+CGF+ ++RQ +K YSNWPT PQ+Y++GE + Sbjct: 49 GTPQEPRCGFN------------------------EVRQALKTYSNWPTYPQLYVSGELI 84 Query: 394 GGCDILLQMHQNGDLVEELKKL-GIRSALLDEKTDQDSK 507 GG DI+ ++ + +L K + L DE+ Q K Sbjct: 85 GGLDIIKELEASKELDMICPKAPKLEERLKDEEVQQGLK 123 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,709,716 Number of Sequences: 33508 Number of extensions: 735836 Number of successful extensions: 2829 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2813 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 3059449210 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-000134 (1032 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 789,820 Number of Sequences: 1040 Number of extensions: 19280 Number of successful extensions: 56 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 94307640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-000134 (1032 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_057501.2| glutaredoxin 5 [Homo sapiens] 199 2e-51 Alignment gi|NP_006532.2| thioredoxin-like [Homo sapiens] 86 4e-17 >ref|NP_057501.2| glutaredoxin 5 [Homo sapiens] Length = 157 Score = 199 bits (507), Expect = 2e-51 Identities = 95/98 (96%), Positives = 96/98 (97%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP+LRQGIKDYSNWPTIPQVYLNGEFV Sbjct: 60 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV 119 Query: 394 GGCDILLQMHQNGDLVEELKKLGIRSALLDEKTDQDSK 507 GGCDILLQMHQNGDLVEELKKLGI SALLDEK DQDSK Sbjct: 120 GGCDILLQMHQNGDLVEELKKLGIHSALLDEKKDQDSK 157 >ref|NP_006532.2| thioredoxin-like [Homo sapiens] Length = 335 Score = 86.3 bits (212), Expect = 4e-17 Identities = 36/80 (45%), Positives = 59/80 (73%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 G ++ +CGFS +++IL GV +Y +++L+D ++RQG+K YSNWPT PQ+Y+ GE V Sbjct: 254 GNKQEAKCGFSKQILEILNSTGV-EYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 312 Query: 394 GGCDILLQMHQNGDLVEELK 453 GG DI+ ++ +NG+L+ L+ Sbjct: 313 GGLDIVKELKENGELLPILR 332 Score = 85.1 bits (209), Expect = 9e-17 Identities = 36/92 (39%), Positives = 66/92 (71%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YS+WPT PQ+Y++GE + Sbjct: 152 GTPQEPRCGFSKQMVEILHKHNIQ-FSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELI 210 Query: 394 GGCDILLQMHQNGDLVEELKKLGIRSALLDEK 489 GG DI+ ++ + EEL + ++ L+E+ Sbjct: 211 GGLDIIKELEAS----EELDTICPKAPKLEER 238 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,793,472 Number of Sequences: 39411 Number of extensions: 869064 Number of successful extensions: 3287 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 2856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3282 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3291649440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-000134 (1032 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei... 87 2e-17 >ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting cousin of thioredoxin) (PKCq-interacting protein) (PKC-theta-interacting protein) [Canis familiaris] Length = 333 Score = 87.4 bits (215), Expect = 2e-17 Identities = 37/80 (46%), Positives = 58/80 (72%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 G ++ +CGFS +++IL GV +Y +++L+D ++RQG+K YSNWPT PQ+Y+ GE V Sbjct: 252 GNKQEAKCGFSKQILEILNSTGV-EYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 310 Query: 394 GGCDILLQMHQNGDLVEELK 453 GG DI+ ++ NG+L+ LK Sbjct: 311 GGLDIVKELKDNGELLPVLK 330 Score = 87.0 bits (214), Expect = 3e-17 Identities = 33/75 (44%), Positives = 58/75 (77%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YSNWPT PQ+Y++GE + Sbjct: 150 GTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELI 208 Query: 394 GGCDILLQMHQNGDL 438 GG DI+ ++ + +L Sbjct: 209 GGLDIIKELEASDEL 223 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,839,175 Number of Sequences: 33732 Number of extensions: 864897 Number of successful extensions: 3382 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 2952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3370 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 3766266443 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-000134 (1032 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_082695.1| glutaredoxin 5 [Mus musculus] 196 3e-50 Alignment gi|NP_075629.2| thioredoxin-like 2 [Mus musculus] 87 2e-17 >ref|NP_082695.1| glutaredoxin 5 [Mus musculus] Length = 152 Score = 196 bits (498), Expect = 3e-50 Identities = 95/98 (96%), Positives = 97/98 (98%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP+LRQGIKDYSNWPTIPQVYLNGEFV Sbjct: 56 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV 115 Query: 394 GGCDILLQMHQNGDLVEELKKLGIRSALLDEKTDQDSK 507 GGCDILLQMHQNGDLVEELKKLGIRSAL+DEK DQDSK Sbjct: 116 GGCDILLQMHQNGDLVEELKKLGIRSALVDEK-DQDSK 152 >ref|NP_075629.2| thioredoxin-like 2 [Mus musculus] Length = 337 Score = 87.4 bits (215), Expect = 2e-17 Identities = 37/92 (40%), Positives = 66/92 (71%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 GTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YSNWPT PQ+Y++GE + Sbjct: 154 GTPQEPRCGFSKQMVEILHKHNIQ-FSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELI 212 Query: 394 GGCDILLQMHQNGDLVEELKKLGIRSALLDEK 489 GG DI+ ++ + EEL + ++ L+E+ Sbjct: 213 GGLDIIKELEAS----EELDTICPKAPKLEER 240 Score = 84.3 bits (207), Expect = 2e-16 Identities = 35/80 (43%), Positives = 58/80 (72%) Frame = +1 Query: 214 GTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFV 393 G ++ +CGFS +++IL GV +Y +++L+D ++RQG+K +SNWPT PQ+Y+ G+ V Sbjct: 256 GNKQEAKCGFSKQILEILNSTGV-EYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLV 314 Query: 394 GGCDILLQMHQNGDLVEELK 453 GG DI+ ++ NG+L+ LK Sbjct: 315 GGLDIVKELKDNGELLPILK 334 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,883,676 Number of Sequences: 45328 Number of extensions: 986696 Number of successful extensions: 4127 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 3512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4110 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 4076090747 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)