BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-008410 (854 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 98 2e-23 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 97.8 bits (242), Expect(2) = 2e-23 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%) Frame = +3 Query: 210 KKMLFWLLALLILCGFLWNYKRQL---KIADITDKYIFITGCDTGFGNLAARTFDKKGFH 380 +++L L AL++L W +L + + + + ITGCD+GFG A+ D GF Sbjct: 49 QRLLPPLAALVVLAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFT 108 Query: 381 VIAACLT--ESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHA 554 V+A L G+ L+A S RL + +D+T P ++ R + K GLWGL+ +A Sbjct: 109 VLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNA 168 Query: 555 GILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGS---AC 725 G ++A + V YR +EVN FG + +T +L L++++ GR++ V S G C Sbjct: 169 GHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPC 228 Query: 726 ISLEG 740 +S G Sbjct: 229 LSAYG 233 Score = 24.6 bits (52), Expect(2) = 2e-23 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 772 LHDSLKAEHEPFGGTVAGIKPGLFKT 849 L DS E +P+G V+ I+P F+T Sbjct: 242 LMDSFSCELQPWGVKVSVIQPACFRT 267 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 816,276 Number of Sequences: 1040 Number of extensions: 19891 Number of successful extensions: 49 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 48 length of database: 434,620 effective HSP length: 76 effective length of database: 355,580 effective search space used: 73960640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-008410 (854 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ... 309 2e-84 Alignment gi|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent... 175 4e-44 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 167 1e-41 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 167 1e-41 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 167 1e-41 Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 167 1e-41 Alignment gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent... 167 1e-41 Alignment gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent... 164 1e-40 Alignment gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr... 160 9e-40 Alignment gi|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 ... 160 2e-39 >ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus] Length = 319 Score = 309 bits (791), Expect = 2e-84 Identities = 153/167 (91%), Positives = 158/167 (94%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 MLFWLL LLILCGFLWNYKRQLKIA+ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWLLVLLILCGFLWNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTESGSTALKAETSERLHTVLLDVTDPENVKR AQ VKNQVGEKGLWGLI +AGILGVLA Sbjct: 61 LTESGSTALKAETSERLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716 P DWLTVEDYREP+EVNLFGLI+VT NML LVKKARGR+INV S GG Sbjct: 121 PNDWLTVEDYREPVEVNLFGLISVTLNMLPLVKKARGRIINVSSIGG 167 >ref|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 260 Score = 175 bits (444), Expect = 4e-44 Identities = 86/182 (47%), Positives = 126/182 (69%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L++L L Y+ + ++ + DK++FITGCD+GFGN AR D++G V+AAC Sbjct: 1 MWLYLVVLVVLYYLLRWYRERQVVSHLEDKFVFITGCDSGFGNRLARQLDQRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ENV T VK VG++GLWGL+ +AGI +A Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTENVTATTNWVKEHVGDRGLWGLVNNAGICTPMA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACISLEGAMLHS 755 P +WLT +D+ + ++VNL G+I+VT ++LSLV+KARGRV+NV S G + L+ S Sbjct: 121 PNEWLTKQDFVKVLDVNLLGVIDVTLSLLSLVRKARGRVVNVSSVLGRVSLVLQATAYPS 180 Query: 756 NM 761 + Sbjct: 181 TV 182 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 167 bits (423), Expect = 1e-41 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ++V + VK +VG++GLWGL+ +AGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S GG C+S Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 167 bits (423), Expect = 1e-41 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ++V + VK +VG++GLWGL+ +AGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S GG C+S Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 167 bits (423), Expect = 1e-41 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ++V + VK +VG++GLWGL+ +AGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S GG C+S Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Bos taurus] Length = 317 Score = 167 bits (423), Expect = 1e-41 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ++V + VK +VG++GLWGL+ +AGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S GG C+S Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Bos taurus] Length = 317 Score = 167 bits (423), Expect = 1e-41 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT ++V + VK +VG++GLWGL+ +AGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S GG C+S Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 338 Score = 164 bits (414), Expect = 1e-40 Identities = 82/171 (47%), Positives = 117/171 (68%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L LL L FL Y+ + ++ + DK++FITGCD+GFGN AR D KG V+AAC Sbjct: 1 MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 L + G+ L+ +TS+RL TV+LDVT E+V + VK +VG++GLWGL+ +AGI +A Sbjct: 61 LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728 P WLT +D+ + +EVNL G+I+VT ++L LV+KARG V+NV S G + Sbjct: 121 PNQWLTKQDFVKILEVNLLGVIDVTLSLLPLVRKARGHVVNVSSVMGRMAV 171 >ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Bos taurus] Length = 313 Score = 160 bits (406), Expect = 9e-40 Identities = 76/148 (51%), Positives = 107/148 (72%) Frame = +3 Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464 + +++DKY+FITGCD+GFGNL AR +G V+AAC T+ G+ L+ +TS +L T+LLD Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSYQLQTILLD 79 Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644 VT E++K Q V++QVGE+GLW L+ +AG+ P +WLT ED+ + I VNL GLI Sbjct: 80 VTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIE 139 Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728 VT +ML +VKKARGRV+N+ S+GG + Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAV 167 >ref|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 [Bos taurus] Length = 180 Score = 160 bits (404), Expect = 2e-39 Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 7/179 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLMGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLMVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ + S+RL TV+LDVT E++ + VK VG++GLWGL+ +AGIL A Sbjct: 61 LTEQGAEQLRNQMSDRLQTVILDVTKTESIAEATEWVKEDVGDRGLWGLVNNAGILLPAA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSN-------GGSACIS 731 P +W T +D+ + + VNL GLI VT + L++K RGRV+NV S GG CIS Sbjct: 121 PNEWQTKDDFSKILNVNLIGLIEVTLSFPPLIRKTRGRVVNVSSPARRVSLFGGGYCIS 179 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,109,789 Number of Sequences: 33508 Number of extensions: 733131 Number of successful extensions: 1935 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 1824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1929 length of database: 16,112,626 effective HSP length: 100 effective length of database: 12,761,826 effective search space used: 2348175984 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-008410 (854 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 318 5e-87 Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 176 3e-44 Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 176 3e-44 Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 164 8e-41 Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 164 8e-41 Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 161 8e-40 Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 160 2e-39 Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 102 4e-22 Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 100 4e-22 Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 91 6e-20 >ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris] Length = 753 Score = 318 bits (814), Expect = 5e-87 Identities = 158/185 (85%), Positives = 168/185 (90%) Frame = +3 Query: 177 SRKKHPCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 356 ++K+ GK+M FW+LALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR Sbjct: 422 TKKEESLSYTGKRMFFWVLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 481 Query: 357 TFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLW 536 TFDKKGFHVIAACLTES STALKAETSERLHTVLLDVTDPENVKRTAQ VKNQVGEKGLW Sbjct: 482 TFDKKGFHVIAACLTESESTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 541 Query: 537 GLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716 GLI +AG+LGVLAPTDWLTVEDYREPIEVNLFGLI+VT N+L LVKKARGR+INV S GG Sbjct: 542 GLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISVTLNLLPLVKKARGRIINVSSIGG 601 Query: 717 SACIS 731 IS Sbjct: 602 RLAIS 606 >ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris] Length = 319 Score = 176 bits (446), Expect = 3e-44 Identities = 91/189 (48%), Positives = 130/189 (68%), Gaps = 9/189 (4%) Frame = +3 Query: 219 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392 ++W LA+L+ +L W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572 CLTE G+ L+++TS+RL TV+LDVT E++ Q V+ VG++GLWGL+ +AGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119 Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731 AP +WLT +D+ + ++VNL GL+ VT ++LSLV+KARGRV+NV S GG CIS Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179 Query: 732 LEGAMLHSN 758 G S+ Sbjct: 180 KYGVEAFSD 188 >ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris] Length = 317 Score = 176 bits (446), Expect = 3e-44 Identities = 91/189 (48%), Positives = 130/189 (68%), Gaps = 9/189 (4%) Frame = +3 Query: 219 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392 ++W LA+L+ +L W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572 CLTE G+ L+++TS+RL TV+LDVT E++ Q V+ VG++GLWGL+ +AGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119 Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731 AP +WLT +D+ + ++VNL GL+ VT ++LSLV+KARGRV+NV S GG CIS Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179 Query: 732 LEGAMLHSN 758 G S+ Sbjct: 180 KYGVEAFSD 188 >ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris] Length = 317 Score = 164 bits (416), Expect = 8e-41 Identities = 86/189 (45%), Positives = 126/189 (66%), Gaps = 9/189 (4%) Frame = +3 Query: 219 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392 ++W LA+L+ C W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572 CLTE G+ L+++TS+RL TV+LDVT E++ Q V+ +VG++GLWGL+ +AGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119 Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731 ++WL +E Y + +VNL GLI VT +ML L+++ARGR++NV S GG+ C S Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 732 LEGAMLHSN 758 G S+ Sbjct: 180 KYGVEAFSD 188 >ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris] Length = 323 Score = 164 bits (416), Expect = 8e-41 Identities = 86/189 (45%), Positives = 126/189 (66%), Gaps = 9/189 (4%) Frame = +3 Query: 219 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392 ++W LA+L+ C W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572 CLTE G+ L+++TS+RL TV+LDVT E++ Q V+ +VG++GLWGL+ +AGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119 Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731 ++WL +E Y + +VNL GLI VT +ML L+++ARGR++NV S GG+ C S Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 732 LEGAMLHSN 758 G S+ Sbjct: 180 KYGVEAFSD 188 >ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris] Length = 313 Score = 161 bits (407), Expect = 8e-40 Identities = 78/148 (52%), Positives = 106/148 (71%) Frame = +3 Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464 + +++DKY+FITGCD+GFGNL AR +G V+AAC TE G+ L+ +TS RL T LLD Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSYRLQTTLLD 79 Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644 VT E+++ Q V++QVGE+GLW L+ +AGI P +WLT ED+ + I VNL GLI Sbjct: 80 VTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIE 139 Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728 VT +ML +VKKARGRV+N+ S+GG + Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAL 167 >ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris] Length = 339 Score = 160 bits (404), Expect = 2e-39 Identities = 82/190 (43%), Positives = 120/190 (63%), Gaps = 7/190 (3%) Frame = +3 Query: 192 PCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKK 371 P G M LL ++L LW + R + +D ++FITGCD+GFG L A D++ Sbjct: 14 PAGHSGSAMWLPLLLGVLLWAVLW-WLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQR 72 Query: 372 GFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXH 551 GF V+A+CLT +G+ L+ S RLHT LLDVT+P++V+R A+ V+ VGE GL+GL+ + Sbjct: 73 GFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNN 132 Query: 552 AGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------N 710 AG+ G++ PT WLT +D+ + VN G I VT +L L++++RGRV+N+ S N Sbjct: 133 AGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAAN 192 Query: 711 GGSACISLEG 740 GG C+S G Sbjct: 193 GGGYCVSKFG 202 >ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris] Length = 382 Score = 102 bits (255), Expect = 4e-22 Identities = 55/166 (33%), Positives = 95/166 (57%), Gaps = 3/166 (1%) Frame = +3 Query: 219 LFWLLALLIL-CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 L W L L L C + Y ++ + K + ITG D+GFG+ ++ D+ GF V Sbjct: 55 LSWGLILFFLSCVLTYTYLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGV 114 Query: 396 LTESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGV 569 L E GS A L+ S+RL + +D+TD + +K V ++ ++GLW ++ +AGI+ + Sbjct: 115 LDEKGSGAEELRRTCSKRLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICL 174 Query: 570 LAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS 707 A + + + DY++ + VN FG + VT L L++K++GR++N+ S Sbjct: 175 PADGELIPMTDYKKCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISS 220 >ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris] Length = 299 Score = 100 bits (250), Expect(2) = 4e-22 Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%) Frame = +3 Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHT 452 + + K + +TGCD+GFG A+ KGF V A CL + G L S+RL T Sbjct: 6 LKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRT 65 Query: 453 VLLDVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVN 626 + L+V E V+R + V++ + EKG+WGL+ +AGI ++ ++E Y+E EVN Sbjct: 66 IQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGI-STFGEVEFTSMETYKEVAEVN 124 Query: 627 LFGLINVT*NMLSLVKKARGRVINVFS 707 L+G + +T L L+++ARGR++N+ S Sbjct: 125 LWGTVQMTKAFLPLIRRARGRIVNISS 151 Score = 22.3 bits (46), Expect(2) = 4e-22 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843 S+M GR+A + C + D L+ E P G V+ ++PG F Sbjct: 150 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 197 >ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris] Length = 323 Score = 90.9 bits (224), Expect(2) = 6e-20 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%) Frame = +3 Query: 324 CDTGFGNLAARTFDKKGFHVIAACLTESGSTAL--KAETSERLHTVLLDVTDPENVKRTA 497 CD+GFG A+ D GF V+A L G AL +A S RL + +D+T P ++ R Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67 Query: 498 QXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKK 677 + K GLWGL+ +AG V+A + V +R +EVN FG + +T +L L+++ Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127 Query: 678 ARGRVINVFSNGG 716 +RGR++ V S G Sbjct: 128 SRGRIVTVGSPAG 140 Score = 25.0 bits (53), Expect(2) = 6e-20 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 772 LHDSLKAEHEPFGGTVAGIKPGLFKT 849 L D+ E P+G V+ I+PG FKT Sbjct: 160 LMDTFSCELLPWGVKVSVIQPGCFKT 185 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,322,971 Number of Sequences: 33732 Number of extensions: 856533 Number of successful extensions: 2267 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2258 length of database: 19,266,565 effective HSP length: 102 effective length of database: 15,825,901 effective search space used: 2880313982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-008410 (854 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 293 2e-79 Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 293 2e-79 Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 162 3e-40 Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 161 6e-40 Alignment gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H... 159 2e-39 Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 153 2e-37 Alignment gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ... 107 1e-23 Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 100 5e-22 Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 100 5e-22 Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 100 5e-22 >ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 293 bits (749), Expect = 2e-79 Identities = 147/171 (85%), Positives = 155/171 (90%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 MLFW+L LLILCGFLW K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTESGSTALKAETSERL TVLLDVTDPENVKRTAQ VKNQVGEKGLWGLI +AG+ GVLA Sbjct: 61 LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728 PTDWLT+EDYREPIEVNLFGLI+VT NML LVKKA+GRVINV S GG I Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAI 171 >ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 293 bits (749), Expect = 2e-79 Identities = 147/171 (85%), Positives = 155/171 (90%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 MLFW+L LLILCGFLW K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTESGSTALKAETSERL TVLLDVTDPENVKRTAQ VKNQVGEKGLWGLI +AG+ GVLA Sbjct: 61 LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728 PTDWLT+EDYREPIEVNLFGLI+VT NML LVKKA+GRVINV S GG I Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAI 171 >ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] Length = 317 Score = 162 bits (411), Expect = 3e-40 Identities = 82/175 (46%), Positives = 114/175 (65%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L A + L L Y+ + ++ + DKY+FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV LDVT E++ Q VK VG++GLWGL+ +AGIL + Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACISLEG 740 +WL ED ++VNL G+I VT +ML LV++ARGR++NV S G + G Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGG 175 >ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] Length = 317 Score = 161 bits (408), Expect = 6e-40 Identities = 90/187 (48%), Positives = 123/187 (65%), Gaps = 9/187 (4%) Frame = +3 Query: 225 WL-LALLILCGFLWNYKRQLKI-ADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398 WL LA+ + +L ++ R+ ++ + + DKY+FITGCD+GFG L AR D +G V+AACL Sbjct: 2 WLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACL 61 Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578 TE G+ L+ +TS+RL TV LDVT E+V AQ VK V +KGLWGL+ +AGI AP Sbjct: 62 TEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTAP 121 Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737 + LT +D ++VNL G+I+VT N+L LV++ARGRV+NVFS GG CIS Sbjct: 122 NELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISKY 181 Query: 738 GAMLHSN 758 G S+ Sbjct: 182 GVEAFSD 188 >ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens] Length = 313 Score = 159 bits (403), Expect = 2e-39 Identities = 78/167 (46%), Positives = 115/167 (68%), Gaps = 1/167 (0%) Frame = +3 Query: 231 LALLILCGFLWNYKRQLK-IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES 407 +A L F++ + + + ++++KY+FITGCD+GFGNL A+ +G V+AAC TE Sbjct: 1 MAALTDLSFMYRWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEE 60 Query: 408 GSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDW 587 GS L+ +TS RL T LLDVT E++K AQ V+++VGE+GLW L+ +AG+ P +W Sbjct: 61 GSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEW 120 Query: 588 LTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728 LT +D+ + I VNL GLI VT +ML +VK+ARGRV+N+ S+GG + Sbjct: 121 LTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAV 167 >ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens] Length = 318 Score = 153 bits (387), Expect = 2e-37 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 9/181 (4%) Frame = +3 Query: 225 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398 WL LL +L LW R + ++ ++FITGCD+GFG L A D++GF V+A+CL Sbjct: 2 WLPLLLGALLWAVLW-LLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCL 60 Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578 T SG+ L+ S RLHT LLD+TDP++V++ A+ V+ V E GL+GL+ +AG+ G++ P Sbjct: 61 TPSGAEDLQRVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGP 120 Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737 T WLT +D++ + VN G I VT +L L+++ARGRVIN+ S NGG C+S Sbjct: 121 TPWLTRDDFQRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKF 180 Query: 738 G 740 G Sbjct: 181 G 181 >ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens] Length = 387 Score = 107 bits (268), Expect = 1e-23 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%) Frame = +3 Query: 222 FWLLALL-ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398 FW L L + C ++ Y ++ + K + +TG D G G+ + D+ GF V A L Sbjct: 55 FWGLILFSVSCFLMYTYLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL 114 Query: 399 TESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572 E+G A L+ S RL + +D+T P +K V + ++GLW +I +AG+LG Sbjct: 115 NENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFP 174 Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSA 722 + L + DY++ + VN FG + VT L L++K++GR++NV S GG A Sbjct: 175 TDGELLLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGA 224 >ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 100 bits (249), Expect(2) = 5e-22 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%) Frame = +3 Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635 +V E V++ + V++ + EKG+WGL+ +AGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 636 LINVT*NMLSLVKKARGRVINVFS 707 + +T + L L+++A+GRV+N+ S Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195 Score = 22.3 bits (46), Expect(2) = 5e-22 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843 S+M GR+A + C + D L+ E P G V+ ++PG F Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241 >ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 100 bits (249), Expect(2) = 5e-22 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%) Frame = +3 Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635 +V E V++ + V++ + EKG+WGL+ +AGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 636 LINVT*NMLSLVKKARGRVINVFS 707 + +T + L L+++A+GRV+N+ S Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195 Score = 22.3 bits (46), Expect(2) = 5e-22 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843 S+M GR+A + C + D L+ E P G V+ ++PG F Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241 >ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 100 bits (249), Expect(2) = 5e-22 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%) Frame = +3 Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635 +V E V++ + V++ + EKG+WGL+ +AGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 636 LINVT*NMLSLVKKARGRVINVFS 707 + +T + L L+++A+GRV+N+ S Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195 Score = 22.3 bits (46), Expect(2) = 5e-22 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843 S+M GR+A + C + D L+ E P G V+ ++PG F Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,951,337 Number of Sequences: 39411 Number of extensions: 842718 Number of successful extensions: 2329 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2314 length of database: 17,774,539 effective HSP length: 101 effective length of database: 13,794,028 effective search space used: 2524307124 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-008410 (854 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 297 1e-80 Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 169 3e-42 Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 169 3e-42 Alignment gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m... 168 7e-42 Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 166 4e-41 Alignment gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc... 165 5e-41 Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 165 5e-41 Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] 164 1e-40 Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 161 7e-40 Alignment gi|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol shor... 161 7e-40 >ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus] Length = 319 Score = 297 bits (760), Expect = 1e-80 Identities = 147/167 (88%), Positives = 154/167 (92%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 MLFWLLALL LC FLWNYK QLKIADI DKY+FITGCDTGFGNLAARTFDKKGF VIAAC Sbjct: 1 MLFWLLALLFLCAFLWNYKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTESGS ALKA+TSERLHTVLLDVTDPENVK+TAQ VK+ VGEKGLWGLI +AG+LGVLA Sbjct: 61 LTESGSAALKAKTSERLHTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716 PTDWLTV+DYREPIEVNLFGLINVT NML LVKKARGRVINV S GG Sbjct: 121 PTDWLTVDDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG 167 >ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] Length = 316 Score = 169 bits (428), Expect = 3e-42 Identities = 89/188 (47%), Positives = 125/188 (66%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG +GLWGL+ +AGI V A Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSN-------GGSACISL 734 +WL ED+ ++VNL G+I VT +ML LV+KARGRV+N+ S+ GG CIS Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179 Query: 735 EGAMLHSN 758 G S+ Sbjct: 180 YGVEAFSD 187 >ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] Length = 317 Score = 169 bits (428), Expect = 3e-42 Identities = 89/188 (47%), Positives = 124/188 (65%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG +GLWGL+ +AGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +W+ +D+ ++VNL GLI VT +ML LV+KARGRVINV S GG+ CIS Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus] Length = 317 Score = 168 bits (425), Expect = 7e-42 Identities = 84/171 (49%), Positives = 116/171 (67%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M F+L+ L+ L L Y+ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG++GLWGL+ +AG+L A Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728 +W EDY +VNL GL VT +ML LVKKARGR++NV S G + Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVAL 171 >ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] Length = 317 Score = 166 bits (419), Expect = 4e-41 Identities = 86/188 (45%), Positives = 122/188 (64%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+AL+ L L ++ + ++ + KY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG +GLWGL+ +AGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +W+ +D+ ++VNL G+I VT +ML LV+KARGRV+NV S GG CIS Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus] Length = 313 Score = 165 bits (418), Expect = 5e-41 Identities = 78/148 (52%), Positives = 109/148 (73%) Frame = +3 Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464 + ++++KY+FITGCD+GFGNL A+ +G V+AACLTE G+ L +TS +L T LLD Sbjct: 20 VKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSHQLQTFLLD 79 Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644 VT ENVK AQ V++QVGE+GLW L+ +AG+ P +WLT++D+ + I +NL GLI+ Sbjct: 80 VTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVININLVGLID 139 Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728 VT NML ++KKARGRV+N+ S+GG I Sbjct: 140 VTLNMLPMIKKARGRVVNMSSSGGRVAI 167 >ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] Length = 317 Score = 165 bits (418), Expect = 5e-41 Identities = 86/188 (45%), Positives = 121/188 (64%), Gaps = 7/188 (3%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFG L AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK VG +GLWGL+ +AGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734 P +W+ +D+ ++VNL G+I VT +ML LV+KARGRV+NV S GG CIS Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180 Query: 735 EGAMLHSN 758 G S+ Sbjct: 181 YGVEAFSD 188 >ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] Length = 318 Score = 164 bits (415), Expect = 1e-40 Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 9/181 (4%) Frame = +3 Query: 225 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398 WL LL +L LW R + +D +IFITGCD+GFG L A D+KGF V+A CL Sbjct: 2 WLPLLLGALLWAVLW-LLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCL 60 Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578 T SG+ L+ S RLHT LLD+TDP+NV++ A+ VK +VGE GL+GL+ +AG+ G++ P Sbjct: 61 TPSGAEDLQQMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGP 120 Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737 T WLT +D++ + VN G I VT +L L+++ARGRV+N+ S NGG C+S Sbjct: 121 TPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKF 180 Query: 738 G 740 G Sbjct: 181 G 181 >ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus] Length = 318 Score = 161 bits (408), Expect = 7e-40 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 8/189 (4%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+ L+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG +GLWGL+ +AGI L Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS--------NGGSACIS 731 + W+ +++ ++VNL G+I VT ML LV+KARGRV+NV S G CIS Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180 Query: 732 LEGAMLHSN 758 G S+ Sbjct: 181 KYGVEAFSD 189 >ref|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase [Mus musculus] Length = 167 Score = 161 bits (408), Expect = 7e-40 Identities = 78/164 (47%), Positives = 114/164 (69%) Frame = +3 Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLCFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575 LTE G+ L+ +TS+RL TV+LDVT E++ Q VK +VG +GLWGL+ + GI Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNTGISVPSG 120 Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS 707 P+ W+ +++ ++VNL G+I VT +ML LV+KARGRV+NV S Sbjct: 121 PSQWMDKQNFASILDVNLLGMIEVTLSMLPLVRKARGRVVNVSS 164 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,641,294 Number of Sequences: 45328 Number of extensions: 990540 Number of successful extensions: 2651 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2641 length of database: 21,768,885 effective HSP length: 102 effective length of database: 17,145,429 effective search space used: 3120468078 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)