Animal-Genome cDNA 20060611S-008410


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-008410
         (854 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr...    98   2e-23

>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
          Length = 400

 Score = 97.8 bits (242), Expect(2) = 2e-23
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
 Frame = +3

Query: 210 KKMLFWLLALLILCGFLWNYKRQL---KIADITDKYIFITGCDTGFGNLAARTFDKKGFH 380
           +++L  L AL++L    W    +L   +   +  + + ITGCD+GFG   A+  D  GF 
Sbjct: 49  QRLLPPLAALVVLAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFT 108

Query: 381 VIAACLT--ESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHA 554
           V+A  L     G+  L+A  S RL  + +D+T P ++ R  +  K      GLWGL+ +A
Sbjct: 109 VLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNA 168

Query: 555 GILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGS---AC 725
           G   ++A  +   V  YR  +EVN FG + +T  +L L++++ GR++ V S  G     C
Sbjct: 169 GHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPC 228

Query: 726 ISLEG 740
           +S  G
Sbjct: 229 LSAYG 233



 Score = 24.6 bits (52), Expect(2) = 2e-23
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 772 LHDSLKAEHEPFGGTVAGIKPGLFKT 849
           L DS   E +P+G  V+ I+P  F+T
Sbjct: 242 LMDSFSCELQPWGVKVSVIQPACFRT 267


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 816,276
Number of Sequences: 1040
Number of extensions: 19891
Number of successful extensions: 49
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 434,620
effective HSP length: 76
effective length of database: 355,580
effective search space used: 73960640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-008410
         (854 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ...   309   2e-84
Alignment   gi|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent...   175   4e-44
Alignment   gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent...   167   1e-41
Alignment   gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent...   167   1e-41
Alignment   gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent...   167   1e-41
Alignment   gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent...   167   1e-41
Alignment   gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent...   167   1e-41
Alignment   gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent...   164   1e-40
Alignment   gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr...   160   9e-40
Alignment   gi|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 ...   160   2e-39

>ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus]
          Length = 319

 Score =  309 bits (791), Expect = 2e-84
 Identities = 153/167 (91%), Positives = 158/167 (94%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           MLFWLL LLILCGFLWNYKRQLKIA+ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWLLVLLILCGFLWNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTESGSTALKAETSERLHTVLLDVTDPENVKR AQ VKNQVGEKGLWGLI +AGILGVLA
Sbjct: 61  LTESGSTALKAETSERLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716
           P DWLTVEDYREP+EVNLFGLI+VT NML LVKKARGR+INV S GG
Sbjct: 121 PNDWLTVEDYREPVEVNLFGLISVTLNMLPLVKKARGRIINVSSIGG 167


>ref|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 [Bos taurus]
          Length = 260

 Score =  175 bits (444), Expect = 4e-44
 Identities = 86/182 (47%), Positives = 126/182 (69%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L++L   L  Y+ +  ++ + DK++FITGCD+GFGN  AR  D++G  V+AAC
Sbjct: 1   MWLYLVVLVVLYYLLRWYRERQVVSHLEDKFVFITGCDSGFGNRLARQLDQRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ENV  T   VK  VG++GLWGL+ +AGI   +A
Sbjct: 61  LTEQGAEQLRNQTSDRLQTVILDVTKTENVTATTNWVKEHVGDRGLWGLVNNAGICTPMA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACISLEGAMLHS 755
           P +WLT +D+ + ++VNL G+I+VT ++LSLV+KARGRV+NV S  G   + L+     S
Sbjct: 121 PNEWLTKQDFVKVLDVNLLGVIDVTLSLLSLVRKARGRVVNVSSVLGRVSLVLQATAYPS 180

Query: 756 NM 761
            +
Sbjct: 181 TV 182


>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 5 [Bos taurus]
          Length = 317

 Score =  167 bits (423), Expect = 1e-41
 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ++V    + VK +VG++GLWGL+ +AGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S        GG  C+S 
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 4 [Bos taurus]
          Length = 317

 Score =  167 bits (423), Expect = 1e-41
 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ++V    + VK +VG++GLWGL+ +AGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S        GG  C+S 
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 3 [Bos taurus]
          Length = 317

 Score =  167 bits (423), Expect = 1e-41
 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ++V    + VK +VG++GLWGL+ +AGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S        GG  C+S 
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 2 [Bos taurus]
          Length = 317

 Score =  167 bits (423), Expect = 1e-41
 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ++V    + VK +VG++GLWGL+ +AGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S        GG  C+S 
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 1 [Bos taurus]
          Length = 317

 Score =  167 bits (423), Expect = 1e-41
 Identities = 86/188 (45%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  ++V    + VK +VG++GLWGL+ +AGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +WLT +D+ + ++VNL G+I+VT ++L LV+KARGRV+NV S        GG  C+S 
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 [Bos taurus]
          Length = 338

 Score =  164 bits (414), Expect = 1e-40
 Identities = 82/171 (47%), Positives = 117/171 (68%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L  LL L  FL  Y+ +  ++ + DK++FITGCD+GFGN  AR  D KG  V+AAC
Sbjct: 1   MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           L + G+  L+ +TS+RL TV+LDVT  E+V    + VK +VG++GLWGL+ +AGI   +A
Sbjct: 61  LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728
           P  WLT +D+ + +EVNL G+I+VT ++L LV+KARG V+NV S  G   +
Sbjct: 121 PNQWLTKQDFVKILEVNLLGVIDVTLSLLPLVRKARGHVVNVSSVMGRMAV 171


>ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
           [Bos taurus]
          Length = 313

 Score =  160 bits (406), Expect = 9e-40
 Identities = 76/148 (51%), Positives = 107/148 (72%)
 Frame = +3

Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464
           + +++DKY+FITGCD+GFGNL AR    +G  V+AAC T+ G+  L+ +TS +L T+LLD
Sbjct: 20  VRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSYQLQTILLD 79

Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644
           VT  E++K   Q V++QVGE+GLW L+ +AG+     P +WLT ED+ + I VNL GLI 
Sbjct: 80  VTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIE 139

Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728
           VT +ML +VKKARGRV+N+ S+GG   +
Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAV 167


>ref|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 [Bos taurus]
          Length = 180

 Score =  160 bits (404), Expect = 2e-39
 Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 7/179 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLMGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLMVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ + S+RL TV+LDVT  E++    + VK  VG++GLWGL+ +AGIL   A
Sbjct: 61  LTEQGAEQLRNQMSDRLQTVILDVTKTESIAEATEWVKEDVGDRGLWGLVNNAGILLPAA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSN-------GGSACIS 731
           P +W T +D+ + + VNL GLI VT +   L++K RGRV+NV S        GG  CIS
Sbjct: 121 PNEWQTKDDFSKILNVNLIGLIEVTLSFPPLIRKTRGRVVNVSSPARRVSLFGGGYCIS 179


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,109,789
Number of Sequences: 33508
Number of extensions: 733131
Number of successful extensions: 1935
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 1824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 16,112,626
effective HSP length: 100
effective length of database: 12,761,826
effective search space used: 2348175984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-008410
         (854 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de...   318   5e-87
Alignment   gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent...   176   3e-44
Alignment   gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent...   176   3e-44
Alignment   gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras...   164   8e-41
Alignment   gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras...   164   8e-41
Alignment   gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr...   161   8e-40
Alignment   gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen...   160   2e-39
Alignment   gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ...   102   4e-22
Alignment   gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro...   100   4e-22
Alignment   gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de...    91   6e-20

>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol
           dehydrogenase/reductase [Canis familiaris]
          Length = 753

 Score =  318 bits (814), Expect = 5e-87
 Identities = 158/185 (85%), Positives = 168/185 (90%)
 Frame = +3

Query: 177 SRKKHPCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 356
           ++K+      GK+M FW+LALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR
Sbjct: 422 TKKEESLSYTGKRMFFWVLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 481

Query: 357 TFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLW 536
           TFDKKGFHVIAACLTES STALKAETSERLHTVLLDVTDPENVKRTAQ VKNQVGEKGLW
Sbjct: 482 TFDKKGFHVIAACLTESESTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 541

Query: 537 GLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716
           GLI +AG+LGVLAPTDWLTVEDYREPIEVNLFGLI+VT N+L LVKKARGR+INV S GG
Sbjct: 542 GLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISVTLNLLPLVKKARGRIINVSSIGG 601

Query: 717 SACIS 731
              IS
Sbjct: 602 RLAIS 606


>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 2 [Canis familiaris]
          Length = 319

 Score =  176 bits (446), Expect = 3e-44
 Identities = 91/189 (48%), Positives = 130/189 (68%), Gaps = 9/189 (4%)
 Frame = +3

Query: 219 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392
           ++W LA+L+   +L  W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572
           CLTE G+  L+++TS+RL TV+LDVT  E++    Q V+  VG++GLWGL+ +AGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119

Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731
           AP +WLT +D+ + ++VNL GL+ VT ++LSLV+KARGRV+NV S        GG  CIS
Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179

Query: 732 LEGAMLHSN 758
             G    S+
Sbjct: 180 KYGVEAFSD 188


>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 1 [Canis familiaris]
          Length = 317

 Score =  176 bits (446), Expect = 3e-44
 Identities = 91/189 (48%), Positives = 130/189 (68%), Gaps = 9/189 (4%)
 Frame = +3

Query: 219 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392
           ++W LA+L+   +L  W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572
           CLTE G+  L+++TS+RL TV+LDVT  E++    Q V+  VG++GLWGL+ +AGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119

Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731
           AP +WLT +D+ + ++VNL GL+ VT ++LSLV+KARGRV+NV S        GG  CIS
Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179

Query: 732 LEGAMLHSN 758
             G    S+
Sbjct: 180 KYGVEAFSD 188


>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
           familiaris]
          Length = 317

 Score =  164 bits (416), Expect = 8e-41
 Identities = 86/189 (45%), Positives = 126/189 (66%), Gaps = 9/189 (4%)
 Frame = +3

Query: 219 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392
           ++W LA+L+   C   W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572
           CLTE G+  L+++TS+RL TV+LDVT  E++    Q V+ +VG++GLWGL+ +AGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119

Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731
             ++WL +E Y +  +VNL GLI VT +ML L+++ARGR++NV S        GG+ C S
Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179

Query: 732 LEGAMLHSN 758
             G    S+
Sbjct: 180 KYGVEAFSD 188


>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
           familiaris]
          Length = 323

 Score =  164 bits (416), Expect = 8e-41
 Identities = 86/189 (45%), Positives = 126/189 (66%), Gaps = 9/189 (4%)
 Frame = +3

Query: 219 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 392
           ++W LA+L+   C   W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 393 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572
           CLTE G+  L+++TS+RL TV+LDVT  E++    Q V+ +VG++GLWGL+ +AGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119

Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACIS 731
             ++WL +E Y +  +VNL GLI VT +ML L+++ARGR++NV S        GG+ C S
Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179

Query: 732 LEGAMLHSN 758
             G    S+
Sbjct: 180 KYGVEAFSD 188


>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
           [Canis familiaris]
          Length = 313

 Score =  161 bits (407), Expect = 8e-40
 Identities = 78/148 (52%), Positives = 106/148 (71%)
 Frame = +3

Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464
           + +++DKY+FITGCD+GFGNL AR    +G  V+AAC TE G+  L+ +TS RL T LLD
Sbjct: 20  VRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSYRLQTTLLD 79

Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644
           VT  E+++   Q V++QVGE+GLW L+ +AGI     P +WLT ED+ + I VNL GLI 
Sbjct: 80  VTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIE 139

Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728
           VT +ML +VKKARGRV+N+ S+GG   +
Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAL 167


>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
           [Canis familiaris]
          Length = 339

 Score =  160 bits (404), Expect = 2e-39
 Identities = 82/190 (43%), Positives = 120/190 (63%), Gaps = 7/190 (3%)
 Frame = +3

Query: 192 PCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKK 371
           P    G  M   LL  ++L   LW + R  +    +D ++FITGCD+GFG L A   D++
Sbjct: 14  PAGHSGSAMWLPLLLGVLLWAVLW-WLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQR 72

Query: 372 GFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXH 551
           GF V+A+CLT +G+  L+   S RLHT LLDVT+P++V+R A+ V+  VGE GL+GL+ +
Sbjct: 73  GFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNN 132

Query: 552 AGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------N 710
           AG+ G++ PT WLT +D+   + VN  G I VT  +L L++++RGRV+N+ S       N
Sbjct: 133 AGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAAN 192

Query: 711 GGSACISLEG 740
           GG  C+S  G
Sbjct: 193 GGGYCVSKFG 202


>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
           [Canis familiaris]
          Length = 382

 Score =  102 bits (255), Expect = 4e-22
 Identities = 55/166 (33%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
 Frame = +3

Query: 219 LFWLLALLIL-CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           L W L L  L C   + Y    ++  +  K + ITG D+GFG+  ++  D+ GF V    
Sbjct: 55  LSWGLILFFLSCVLTYTYLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGV 114

Query: 396 LTESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGV 569
           L E GS A  L+   S+RL  + +D+TD + +K     V  ++ ++GLW ++ +AGI+ +
Sbjct: 115 LDEKGSGAEELRRTCSKRLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICL 174

Query: 570 LAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS 707
            A  + + + DY++ + VN FG + VT   L L++K++GR++N+ S
Sbjct: 175 PADGELIPMTDYKKCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISS 220


>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
           [Canis familiaris]
          Length = 299

 Score =  100 bits (250), Expect(2) = 4e-22
 Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
 Frame = +3

Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHT 452
           +  +  K + +TGCD+GFG   A+    KGF V A CL +     G   L    S+RL T
Sbjct: 6   LKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRT 65

Query: 453 VLLDVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVN 626
           + L+V   E V+R  + V++ +   EKG+WGL+ +AGI       ++ ++E Y+E  EVN
Sbjct: 66  IQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGI-STFGEVEFTSMETYKEVAEVN 124

Query: 627 LFGLINVT*NMLSLVKKARGRVINVFS 707
           L+G + +T   L L+++ARGR++N+ S
Sbjct: 125 LWGTVQMTKAFLPLIRRARGRIVNISS 151



 Score = 22.3 bits (46), Expect(2) = 4e-22
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843
           S+M GR+A   +   C      +   D L+ E  P G  V+ ++PG F
Sbjct: 150 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 197


>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme
           2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
           (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
           dehydrogenase) [Canis familiaris]
          Length = 323

 Score = 90.9 bits (224), Expect(2) = 6e-20
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
 Frame = +3

Query: 324 CDTGFGNLAARTFDKKGFHVIAACLTESGSTAL--KAETSERLHTVLLDVTDPENVKRTA 497
           CD+GFG   A+  D  GF V+A  L   G  AL  +A  S RL  + +D+T P ++ R  
Sbjct: 8   CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67

Query: 498 QXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKK 677
           +  K      GLWGL+ +AG   V+A  +   V  +R  +EVN FG + +T  +L L+++
Sbjct: 68  EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127

Query: 678 ARGRVINVFSNGG 716
           +RGR++ V S  G
Sbjct: 128 SRGRIVTVGSPAG 140



 Score = 25.0 bits (53), Expect(2) = 6e-20
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 772 LHDSLKAEHEPFGGTVAGIKPGLFKT 849
           L D+   E  P+G  V+ I+PG FKT
Sbjct: 160 LMDTFSCELLPWGVKVSVIQPGCFKT 185


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,322,971
Number of Sequences: 33732
Number of extensions: 856533
Number of successful extensions: 2267
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2258
length of database: 19,266,565
effective HSP length: 102
effective length of database: 15,825,901
effective search space used: 2880313982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-008410
         (854 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ...   293   2e-79
Alignment   gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ...   293   2e-79
Alignment   gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]            162   3e-40
Alignment   gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]              161   6e-40
Alignment   gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H...   159   2e-39
Alignment   gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom...   153   2e-37
Alignment   gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ...   107   1e-23
Alignment   gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   100   5e-22
Alignment   gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   100   5e-22
Alignment   gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   100   5e-22

>ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  293 bits (749), Expect = 2e-79
 Identities = 147/171 (85%), Positives = 155/171 (90%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           MLFW+L LLILCGFLW  K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTESGSTALKAETSERL TVLLDVTDPENVKRTAQ VKNQVGEKGLWGLI +AG+ GVLA
Sbjct: 61  LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728
           PTDWLT+EDYREPIEVNLFGLI+VT NML LVKKA+GRVINV S GG   I
Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAI 171


>ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  293 bits (749), Expect = 2e-79
 Identities = 147/171 (85%), Positives = 155/171 (90%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           MLFW+L LLILCGFLW  K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTESGSTALKAETSERL TVLLDVTDPENVKRTAQ VKNQVGEKGLWGLI +AG+ GVLA
Sbjct: 61  LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728
           PTDWLT+EDYREPIEVNLFGLI+VT NML LVKKA+GRVINV S GG   I
Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAI 171


>ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]
          Length = 317

 Score =  162 bits (411), Expect = 3e-40
 Identities = 82/175 (46%), Positives = 114/175 (65%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L A + L   L  Y+ +  ++ + DKY+FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV LDVT  E++    Q VK  VG++GLWGL+ +AGIL  + 
Sbjct: 61  LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACISLEG 740
             +WL  ED    ++VNL G+I VT +ML LV++ARGR++NV S  G     + G
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGG 175


>ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]
          Length = 317

 Score =  161 bits (408), Expect = 6e-40
 Identities = 90/187 (48%), Positives = 123/187 (65%), Gaps = 9/187 (4%)
 Frame = +3

Query: 225 WL-LALLILCGFLWNYKRQLKI-ADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398
           WL LA+ +   +L ++ R+ ++ + + DKY+FITGCD+GFG L AR  D +G  V+AACL
Sbjct: 2   WLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACL 61

Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578
           TE G+  L+ +TS+RL TV LDVT  E+V   AQ VK  V +KGLWGL+ +AGI    AP
Sbjct: 62  TEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTAP 121

Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737
            + LT +D    ++VNL G+I+VT N+L LV++ARGRV+NVFS        GG  CIS  
Sbjct: 122 NELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISKY 181

Query: 738 GAMLHSN 758
           G    S+
Sbjct: 182 GVEAFSD 188


>ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens]
          Length = 313

 Score =  159 bits (403), Expect = 2e-39
 Identities = 78/167 (46%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
 Frame = +3

Query: 231 LALLILCGFLWNYKRQLK-IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES 407
           +A L    F++ + +    + ++++KY+FITGCD+GFGNL A+    +G  V+AAC TE 
Sbjct: 1   MAALTDLSFMYRWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEE 60

Query: 408 GSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDW 587
           GS  L+ +TS RL T LLDVT  E++K  AQ V+++VGE+GLW L+ +AG+     P +W
Sbjct: 61  GSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEW 120

Query: 588 LTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728
           LT +D+ + I VNL GLI VT +ML +VK+ARGRV+N+ S+GG   +
Sbjct: 121 LTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAV 167


>ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens]
          Length = 318

 Score =  153 bits (387), Expect = 2e-37
 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 9/181 (4%)
 Frame = +3

Query: 225 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398
           WL  LL  +L   LW   R  +    ++ ++FITGCD+GFG L A   D++GF V+A+CL
Sbjct: 2   WLPLLLGALLWAVLW-LLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCL 60

Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578
           T SG+  L+   S RLHT LLD+TDP++V++ A+ V+  V E GL+GL+ +AG+ G++ P
Sbjct: 61  TPSGAEDLQRVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGP 120

Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737
           T WLT +D++  + VN  G I VT  +L L+++ARGRVIN+ S       NGG  C+S  
Sbjct: 121 TPWLTRDDFQRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKF 180

Query: 738 G 740
           G
Sbjct: 181 G 181


>ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens]
          Length = 387

 Score =  107 bits (268), Expect = 1e-23
 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
 Frame = +3

Query: 222 FWLLALL-ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398
           FW L L  + C  ++ Y    ++  +  K + +TG D G G+   +  D+ GF V A  L
Sbjct: 55  FWGLILFSVSCFLMYTYLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL 114

Query: 399 TESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVL 572
            E+G  A  L+   S RL  + +D+T P  +K     V   + ++GLW +I +AG+LG  
Sbjct: 115 NENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFP 174

Query: 573 APTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSA 722
              + L + DY++ + VN FG + VT   L L++K++GR++NV S GG A
Sbjct: 175 TDGELLLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGA 224


>ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  100 bits (249), Expect(2) = 5e-22
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
 Frame = +3

Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635
           +V   E V++  + V++ +   EKG+WGL+ +AGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 636 LINVT*NMLSLVKKARGRVINVFS 707
            + +T + L L+++A+GRV+N+ S
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195



 Score = 22.3 bits (46), Expect(2) = 5e-22
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843
           S+M GR+A   +   C      +   D L+ E  P G  V+ ++PG F
Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241


>ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  100 bits (249), Expect(2) = 5e-22
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
 Frame = +3

Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635
           +V   E V++  + V++ +   EKG+WGL+ +AGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 636 LINVT*NMLSLVKKARGRVINVFS 707
            + +T + L L+++A+GRV+N+ S
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195



 Score = 22.3 bits (46), Expect(2) = 5e-22
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843
           S+M GR+A   +   C      +   D L+ E  P G  V+ ++PG F
Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241


>ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  100 bits (249), Expect(2) = 5e-22
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
 Frame = +3

Query: 294 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 461
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 462 DVTDPENVKRTAQXVKNQVG--EKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFG 635
           +V   E V++  + V++ +   EKG+WGL+ +AGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 636 LINVT*NMLSLVKKARGRVINVFS 707
            + +T + L L+++A+GRV+N+ S
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISS 195



 Score = 22.3 bits (46), Expect(2) = 5e-22
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 SAMGGRLAFRWKG-LCFIPICSKRLHDSLKAEHEPFGGTVAGIKPGLF 843
           S+M GR+A   +   C      +   D L+ E  P G  V+ ++PG F
Sbjct: 194 SSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNF 241


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,951,337
Number of Sequences: 39411
Number of extensions: 842718
Number of successful extensions: 2329
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 17,774,539
effective HSP length: 101
effective length of database: 13,794,028
effective search space used: 2524307124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-008410
         (854 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ...   297   1e-80
Alignment   gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]               169   3e-42
Alignment   gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]               169   3e-42
Alignment   gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m...   168   7e-42
Alignment   gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]   166   4e-41
Alignment   gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc...   165   5e-41
Alignment   gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]              165   5e-41
Alignment   gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]               164   1e-40
Alignment   gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu...   161   7e-40
Alignment   gi|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol shor...   161   7e-40

>ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus]
          Length = 319

 Score =  297 bits (760), Expect = 1e-80
 Identities = 147/167 (88%), Positives = 154/167 (92%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           MLFWLLALL LC FLWNYK QLKIADI DKY+FITGCDTGFGNLAARTFDKKGF VIAAC
Sbjct: 1   MLFWLLALLFLCAFLWNYKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTESGS ALKA+TSERLHTVLLDVTDPENVK+TAQ VK+ VGEKGLWGLI +AG+LGVLA
Sbjct: 61  LTESGSAALKAKTSERLHTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGG 716
           PTDWLTV+DYREPIEVNLFGLINVT NML LVKKARGRVINV S GG
Sbjct: 121 PTDWLTVDDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG 167


>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]
          Length = 316

 Score =  169 bits (428), Expect = 3e-42
 Identities = 89/188 (47%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG +GLWGL+ +AGI  V A
Sbjct: 61  LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSN-------GGSACISL 734
             +WL  ED+   ++VNL G+I VT +ML LV+KARGRV+N+ S+       GG  CIS 
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 180 YGVEAFSD 187


>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]
          Length = 317

 Score =  169 bits (428), Expect = 3e-42
 Identities = 89/188 (47%), Positives = 124/188 (65%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG +GLWGL+ +AGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +W+  +D+   ++VNL GLI VT +ML LV+KARGRVINV S        GG+ CIS 
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus]
          Length = 317

 Score =  168 bits (425), Expect = 7e-42
 Identities = 84/171 (49%), Positives = 116/171 (67%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M F+L+ L+ L   L  Y+ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG++GLWGL+ +AG+L   A
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFSNGGSACI 728
             +W   EDY    +VNL GL  VT +ML LVKKARGR++NV S  G   +
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVAL 171


>ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]
          Length = 317

 Score =  166 bits (419), Expect = 4e-41
 Identities = 86/188 (45%), Positives = 122/188 (64%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+AL+ L   L  ++ +  ++ +  KY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG +GLWGL+ +AGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +W+  +D+   ++VNL G+I VT +ML LV+KARGRV+NV S        GG  CIS 
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus]
          Length = 313

 Score =  165 bits (418), Expect = 5e-41
 Identities = 78/148 (52%), Positives = 109/148 (73%)
 Frame = +3

Query: 285 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 464
           + ++++KY+FITGCD+GFGNL A+    +G  V+AACLTE G+  L  +TS +L T LLD
Sbjct: 20  VKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSHQLQTFLLD 79

Query: 465 VTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 644
           VT  ENVK  AQ V++QVGE+GLW L+ +AG+     P +WLT++D+ + I +NL GLI+
Sbjct: 80  VTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVININLVGLID 139

Query: 645 VT*NMLSLVKKARGRVINVFSNGGSACI 728
           VT NML ++KKARGRV+N+ S+GG   I
Sbjct: 140 VTLNMLPMIKKARGRVVNMSSSGGRVAI 167


>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]
          Length = 317

 Score =  165 bits (418), Expect = 5e-41
 Identities = 86/188 (45%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFG L AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK  VG +GLWGL+ +AGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISL 734
           P +W+  +D+   ++VNL G+I VT +ML LV+KARGRV+NV S        GG  CIS 
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180

Query: 735 EGAMLHSN 758
            G    S+
Sbjct: 181 YGVEAFSD 188


>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]
          Length = 318

 Score =  164 bits (415), Expect = 1e-40
 Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 9/181 (4%)
 Frame = +3

Query: 225 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 398
           WL  LL  +L   LW   R  +    +D +IFITGCD+GFG L A   D+KGF V+A CL
Sbjct: 2   WLPLLLGALLWAVLW-LLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCL 60

Query: 399 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLAP 578
           T SG+  L+   S RLHT LLD+TDP+NV++ A+ VK +VGE GL+GL+ +AG+ G++ P
Sbjct: 61  TPSGAEDLQQMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGP 120

Query: 579 TDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS-------NGGSACISLE 737
           T WLT +D++  + VN  G I VT  +L L+++ARGRV+N+ S       NGG  C+S  
Sbjct: 121 TPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKF 180

Query: 738 G 740
           G
Sbjct: 181 G 181


>ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus]
          Length = 318

 Score =  161 bits (408), Expect = 7e-40
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 8/189 (4%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+ L+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG +GLWGL+ +AGI   L 
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS--------NGGSACIS 731
            + W+  +++   ++VNL G+I VT  ML LV+KARGRV+NV S          G  CIS
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180

Query: 732 LEGAMLHSN 758
             G    S+
Sbjct: 181 KYGVEAFSD 189


>ref|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol short-chain
           dehydrogenase [Mus musculus]
          Length = 167

 Score =  161 bits (408), Expect = 7e-40
 Identities = 78/164 (47%), Positives = 114/164 (69%)
 Frame = +3

Query: 216 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 395
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLCFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 396 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQXVKNQVGEKGLWGLIXHAGILGVLA 575
           LTE G+  L+ +TS+RL TV+LDVT  E++    Q VK +VG +GLWGL+ + GI     
Sbjct: 61  LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNTGISVPSG 120

Query: 576 PTDWLTVEDYREPIEVNLFGLINVT*NMLSLVKKARGRVINVFS 707
           P+ W+  +++   ++VNL G+I VT +ML LV+KARGRV+NV S
Sbjct: 121 PSQWMDKQNFASILDVNLLGMIEVTLSMLPLVRKARGRVVNVSS 164


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,641,294
Number of Sequences: 45328
Number of extensions: 990540
Number of successful extensions: 2651
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2641
length of database: 21,768,885
effective HSP length: 102
effective length of database: 17,145,429
effective search space used: 3120468078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)