BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-012985 (938 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999143.1| beta 2-microglobulin [Sus scrofa] 101 2e-23 >ref|NP_999143.1| beta 2-microglobulin [Sus scrofa] Length = 118 Score = 101 bits (252), Expect = 2e-23 Identities = 55/100 (55%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Frame = +1 Query: 82 DAVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTR 261 DAVARPPKV VYS HP +NGK +YLNCYVSGFHPP IEIDLLKNG+KM + LS Sbjct: 19 DAVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMN--AEQSDLSFS 76 Query: 262 TGLSTFWTPVTSLLTLWINIAACE-KNVTLDKPIMLGWDR 378 S + T ++ +C K+VTLDKP ++ WDR Sbjct: 77 KDWSFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKWDR 116 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 858,228 Number of Sequences: 1040 Number of extensions: 20532 Number of successful extensions: 74 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 72 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 83316900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-012985 (938 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_776318.1| beta-2-microglobulin [Bos taurus] 92 8e-19 >ref|NP_776318.1| beta-2-microglobulin [Bos taurus] Length = 118 Score = 91.7 bits (226), Expect = 8e-19 Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Frame = +1 Query: 82 DAVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTR 261 DA+ RPPK+ VYS HPP++GK +YLNCYV GFHPP IEIDLLKNG+K+K + + LS Sbjct: 19 DAIQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIK--SEQSDLSFS 76 Query: 262 TGLSTFWTPVTSLLTLWINIAACE-KNVTLDKPIMLGWDR 378 S + + +C K+VTL++P ++ WDR Sbjct: 77 KDWSFYLLSHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDR 116 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,642,670 Number of Sequences: 33508 Number of extensions: 767230 Number of successful extensions: 2677 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 2451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2674 length of database: 16,112,626 effective HSP length: 101 effective length of database: 12,728,318 effective search space used: 2685675098 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-012985 (938 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_004039.1| beta-2-microglobulin precursor [Homo sapiens] 86 4e-17 >ref|NP_004039.1| beta-2-microglobulin precursor [Homo sapiens] Length = 119 Score = 85.9 bits (211), Expect = 4e-17 Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Frame = +1 Query: 82 DAVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTR 261 +A+ R PK+ VYS HP +NGK ++LNCYVSGFHP DIE+DLLKNG++++ V + LS Sbjct: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH-SDLSFS 77 Query: 262 TGLSTFWTPVTSLLTLWINIAACEKN-VTLDKPIMLGWDR 378 S + T + AC N VTL +P ++ WDR Sbjct: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDR 117 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,674,653 Number of Sequences: 39411 Number of extensions: 886184 Number of successful extensions: 3427 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 2928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3411 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 2888469570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-012985 (938 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_535458.1| PREDICTED: similar to beta-2-microglobulin prec... 91 2e-18 Alignment gi|XP_850148.1| PREDICTED: similar to beta-2-microglobulin prec... 91 2e-18 >ref|XP_535458.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris] Length = 125 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Frame = +1 Query: 82 DAVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTR 261 DAV PPK+ VYS HP +NGK ++LNCYVSGFHPP+IEIDLLKNG +MK T Sbjct: 26 DAVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMK------AEQTD 79 Query: 262 TGLSTFWTPVTSLLTLWI-----NIAACEKNVTLDKPIMLGWDR 378 S WT + T + + K+VTL +P ++ WDR Sbjct: 80 LSFSKDWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWDR 123 >ref|XP_850148.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 3 [Canis familiaris] Length = 125 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Frame = +1 Query: 82 DAVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTR 261 DAV PPK+ VYS HP +NGK ++LNCYVSGFHPP+IEIDLLKNG +MK T Sbjct: 26 DAVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMK------AEQTD 79 Query: 262 TGLSTFWTPVTSLLTLWI-----NIAACEKNVTLDKPIMLGWDR 378 S WT + T + + K+VTL +P ++ WDR Sbjct: 80 LSFSKDWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWDR 123 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,106,906 Number of Sequences: 33732 Number of extensions: 894666 Number of successful extensions: 3203 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 2845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3192 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3300563321 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-012985 (938 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_033865.2| beta-2-microglobulin [Mus musculus] 73 4e-13 >ref|NP_033865.2| beta-2-microglobulin [Mus musculus] Length = 119 Score = 73.2 bits (178), Expect = 4e-13 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%) Frame = +1 Query: 85 AVARPPKVHVYSLHPPQNGKRHYLNCYVSGFHPPDIEIDLLKNGDKMKFVTTLTCLSTRT 264 A+ + P++ VYS HPP+NGK + LNCYV+ FHPP IEI +LKNG K+ V ++ +S Sbjct: 20 AIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV-EMSDMSFSK 78 Query: 265 GLSTFWTPVTSLLTLWINIAACE-KNVTLDKPIMLGWDR 378 S + T + AC K+ ++ +P + WDR Sbjct: 79 DWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDR 117 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,803,272 Number of Sequences: 45328 Number of extensions: 1038399 Number of successful extensions: 3635 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 3243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3627 length of database: 21,768,885 effective HSP length: 103 effective length of database: 17,100,101 effective search space used: 3573921109 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)