BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-013433
(1304 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,241,017
Number of Sequences: 1040
Number of extensions: 34529
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 125123300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-013433
(1304 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029406.1| hypothetical protein LOC505069 [Bos taurus] 459 e-129
Alignment gi|XP_592910.2| PREDICTED: similar to solute carrier family 13 ... 201 1e-51
Alignment gi|XP_879374.1| PREDICTED: similar to solute carrier family 13 ... 201 1e-51
Alignment gi|XP_610033.2| PREDICTED: similar to Solute carrier family 13 ... 175 8e-44
Alignment gi|XP_604655.2| PREDICTED: similar to Solute carrier family 13 ... 172 7e-43
Alignment gi|XP_869690.1| PREDICTED: similar to solute carrier family 13 ... 52 8e-07
Alignment gi|XP_583540.2| PREDICTED: similar to solute carrier family 13 ... 52 8e-07
Alignment gi|XP_883135.1| PREDICTED: similar to Solute carrier family 13 ... 49 9e-06
>ref|NP_001029406.1| hypothetical protein LOC505069 [Bos taurus]
Length = 592
Score = 459 bits (1181), Expect = e-129
Identities = 250/365 (68%), Positives = 273/365 (74%), Gaps = 8/365 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEA CAYTIILMALLWCTEALPLAVTA
Sbjct: 1 MATCWQGLWAYRFYLIVFFLPIFLLPLPILVPTKEACCAYTIILMALLWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
FLPVI+FPMMGIM AS VS+EYLKD+NILFIGGM+VA+AVE WNLHKRIALRVLLIIGVR
Sbjct: 61 FLPVIMFPMMGIMTASTVSLEYLKDTNILFIGGMMVALAVETWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALLILGFM+VTAFLSMWISNTATTAMM+PIAHAVLEQLHK+P +DVEEGR NPAFELQ
Sbjct: 121 PALLILGFMLVTAFLSMWISNTATTAMMLPIAHAVLEQLHKMPTDRDVEEGRHNPAFELQ 180
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E Q+EETKLDEKDNKQD P PSESKTQQN+EQLRF+QG+SLCVCYSASIGGIATL
Sbjct: 181 E---QKEETKLDEKDNKQDCPALPTPSESKTQQNKEQLRFSQGLSLCVCYSASIGGIATL 237
Query: 796 TGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSREL 975
TGTTPNLVLQGQVNSIFPRN +VVNFASWFGFAFP + F G R+
Sbjct: 238 TGTTPNLVLQGQVNSIFPRNGNVVNFASWFGFAFPAMIILLLLSWVWLQILFLGFDFRKN 297
Query: 976 SARGQMKEKSERPSSH--REGAQQLGPLSFAKSRHCPL-----CQWGGLFTREQA-FPGW 1131
G+ + ER + R + LGP++FA+ L W FTRE F GW
Sbjct: 298 FGLGEQSKNQERAAFEVIRREHKLLGPINFAEKAVTFLFVLLVVLW---FTREPGFFTGW 354
Query: 1132 GNXPF 1146
GN F
Sbjct: 355 GNLAF 359
>ref|XP_592910.2| PREDICTED: similar to solute carrier family 13 (sodium/sulfate
symporters), member 1 isoform 1 [Bos taurus]
Length = 607
Score = 201 bits (511), Expect = 1e-51
Identities = 119/323 (36%), Positives = 180/323 (55%), Gaps = 27/323 (8%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+KEA CAYT+ ++A+ W TEALPL++TA LP ++FPM GIM + +V+ Y KD ++L IG
Sbjct: 32 SKEAECAYTLFVIAIFWLTEALPLSITALLPGLMFPMFGIMTSKEVASAYFKDFHLLLIG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ +A ++E WNLHKRIALR+++++GV PA L LGFM TAFLSMW+SNT+T AM++PI
Sbjct: 92 VICLATSIEKWNLHKRIALRMVMMVGVNPAWLSLGFMSSTAFLSMWLSNTSTAAMVMPIV 151
Query: 532 HAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAA 690
AV +Q+ I +VE G N A E+ E QE + EK PVP
Sbjct: 152 EAVAQQV--ISAEAEVEATQMTYFSGSTNQALEIDESINGQEANERKEKTK----PVPGY 205
Query: 691 PSESKTQQNEEQLRFTQG------------------MSLCVCYSASIGGIATLTGTTPNL 816
+++ ++ +L G M LC+ YS++IGG+ T+TGT+ NL
Sbjct: 206 SNDAGKISSKMELEKNSGTNSGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNL 265
Query: 817 VLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSRELSARGQMK 996
+ N +P + +NF SWF +FP + F G +E+ G+
Sbjct: 266 IFAEHFNMRYP-DCQCINFGSWFIMSFPAAIVILLLSWIWLQWFFLGFNFKEMFQCGKPP 324
Query: 997 EKSERPSSH--REGAQQLGPLSF 1059
++ + ++ Q+LGP+ +
Sbjct: 325 TAKQKACAAFIKQEYQKLGPIRY 347
>ref|XP_879374.1| PREDICTED: similar to solute carrier family 13 (sodium/sulfate
symporters), member 1 isoform 2 [Bos taurus]
Length = 599
Score = 201 bits (511), Expect = 1e-51
Identities = 119/323 (36%), Positives = 180/323 (55%), Gaps = 27/323 (8%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+KEA CAYT+ ++A+ W TEALPL++TA LP ++FPM GIM + +V+ Y KD ++L IG
Sbjct: 32 SKEAECAYTLFVIAIFWLTEALPLSITALLPGLMFPMFGIMTSKEVASAYFKDFHLLLIG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ +A ++E WNLHKRIALR+++++GV PA L LGFM TAFLSMW+SNT+T AM++PI
Sbjct: 92 VICLATSIEKWNLHKRIALRMVMMVGVNPAWLSLGFMSSTAFLSMWLSNTSTAAMVMPIV 151
Query: 532 HAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAA 690
AV +Q+ I +VE G N A E+ E QE + EK PVP
Sbjct: 152 EAVAQQV--ISAEAEVEATQMTYFSGSTNQALEIDESINGQEANERKEKTK----PVPGY 205
Query: 691 PSESKTQQNEEQLRFTQG------------------MSLCVCYSASIGGIATLTGTTPNL 816
+++ ++ +L G M LC+ YS++IGG+ T+TGT+ NL
Sbjct: 206 SNDAGKISSKMELEKNSGTNSGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNL 265
Query: 817 VLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSRELSARGQMK 996
+ N +P + +NF SWF +FP + F G +E+ G+
Sbjct: 266 IFAEHFNMRYP-DCQCINFGSWFIMSFPAAIVILLLSWIWLQWFFLGFNFKEMFQCGKPP 324
Query: 997 EKSERPSSH--REGAQQLGPLSF 1059
++ + ++ Q+LGP+ +
Sbjct: 325 TAKQKACAAFIKQEYQKLGPIRY 347
>ref|XP_610033.2| PREDICTED: similar to Solute carrier family 13 member 4
(Na(+)/sulfate cotransporter SUT-1) isoform 1 [Bos
taurus]
Length = 698
Score = 175 bits (443), Expect = 8e-44
Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 57/377 (15%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 104 SSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAGEYFKNTTLLLVG 163
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 164 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTLLSMWLSNTSTTAMVMPIV 223
Query: 532 HAVLEQL----------------HKIPVGKDVEEGRGNPAFEL---QEPSPQQEETKLDE 654
AVL++L P+ DV + P EL E + + L +
Sbjct: 224 EAVLQELVSAEEEQLVAGNSSAEEAEPINLDVNNSQ--PPLELIFVNEDTSNADFNSLMQ 281
Query: 655 KDNKQDLPV----------------------PAAPSESKTQQNEEQLRFTQGMSLCVC-- 762
N+ +P P S+ Q+ + + + +C C
Sbjct: 282 NKNRNGVPTVTNSAETANLPGRKQHPSQEKPPVLTPSSRNQELKRKYKSQHDQMICKCLS 341
Query: 763 ----YSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP--------TW 906
Y+A+IGG+ T+ GT+ +L+ N+ +P VVNF +WF F+FP +W
Sbjct: 342 LSISYAATIGGLTTIIGTSTSLIFLEHFNNQYPA-AEVVNFGTWFLFSFPISLIMLVVSW 400
Query: 907 SSCCY-FPGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLGPLSFAKSRHCPL 1083
+ F GC + + + ++ + R ++ EK + + GA +
Sbjct: 401 FWMHWLFLGCNFKETC-SLSKKKKTKREELSEKRIQEEYEKLGAITYPEMVTGFFFVLMT 459
Query: 1084 CQWGGLFTREQAF-PGW 1131
W FTRE F PGW
Sbjct: 460 VLW---FTREPGFVPGW 473
>ref|XP_604655.2| PREDICTED: similar to Solute carrier family 13 member 3
(Sodium-dependent high-affinity dicarboxylate
transporter 2) (Na(+)/dicarboxylate cotransporter 3)
(NaDC-3) (hNaDC3) [Bos taurus]
Length = 709
Score = 172 bits (435), Expect = 7e-43
Identities = 80/159 (50%), Positives = 113/159 (71%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+AT + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LATVAKKVWSARRLLVLLFTPLVLLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP++LFP +GI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL+VL++ GV+
Sbjct: 64 LLPIVLFPFLGILPSNKVCAQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLTGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQL 552
PA LILG M T+FLSMW+SNTA+TAMM+PIA+A+L+ L
Sbjct: 124 PARLILGMMATTSFLSMWLSNTASTAMMLPIANAILKSL 162
Score = 84.0 bits (206), Expect = 2e-16
Identities = 66/194 (34%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Frame = +1
Query: 619 PSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATLT 798
P+ Q ++KD ++ P + ++ E + +G + + YSASIGG ATLT
Sbjct: 257 PTEMQFIAGTEDKDCPEEAEAPTDLHPTSKKEEEYRRNIWKGFLISIPYSASIGGTATLT 316
Query: 799 GTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP----------TWSSCCYFPGCGCRSS 948
GT PNL+L GQ+ S FP+ VVNF SWF FAFP W S Y
Sbjct: 317 GTAPNLILLGQLKSFFPQ-CDVVNFGSWFIFAFPLMLLFLLVGWLWISFLY--------- 366
Query: 949 F*GSTSRELSARGQMKEKSE--------RPSSHREGAQQLGPLSFAKSRHCPL-CQWG-G 1098
++ RG K+KSE + RE Q LGP+ FA+ L C +
Sbjct: 367 ------GGITLRGWRKKKSELRTDAEKRARDTIREEFQSLGPIKFAEQAVFILFCVFAIL 420
Query: 1099 LFTREQAF-PGWGN 1137
LF+R+ F PGW +
Sbjct: 421 LFSRDPKFIPGWAS 434
>ref|XP_869690.1| PREDICTED: similar to solute carrier family 13 (sodium-dependent
citrate transporter), member 5 isoform 2 [Bos taurus]
Length = 328
Score = 52.4 bits (124), Expect = 8e-07
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Frame = +1
Query: 832 VNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSER 1011
+ +FP + +VNFASWFGFAFP R + +LS +++KSE
Sbjct: 1 MQELFPDSKDIVNFASWFGFAFPNMLIMLLLSWLWLRFMY---MRFDLSWGCSLEKKSEE 57
Query: 1012 PSSHR---EGAQQLGPLSFAKSR--HCPLCQWGGLFTREQAF-PGW 1131
S+H ++LGPLSFA+ C G FTR+ F PGW
Sbjct: 58 KSAHEVLWAEYRKLGPLSFAEINVLLCFFLLVGLWFTRDPGFMPGW 103
>ref|XP_583540.2| PREDICTED: similar to solute carrier family 13 (sodium-dependent
citrate transporter), member 5 isoform 1 [Bos taurus]
Length = 282
Score = 52.4 bits (124), Expect = 8e-07
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Frame = +1
Query: 832 VNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSER 1011
+ +FP + +VNFASWFGFAFP R + +LS +++KSE
Sbjct: 1 MQELFPDSKDIVNFASWFGFAFPNMLIMLLLSWLWLRFMY---MRFDLSWGCSLEKKSEE 57
Query: 1012 PSSHR---EGAQQLGPLSFAKSR--HCPLCQWGGLFTREQAF-PGW 1131
S+H ++LGPLSFA+ C G FTR+ F PGW
Sbjct: 58 KSAHEVLWAEYRKLGPLSFAEINVLLCFFLLVGLWFTRDPGFMPGW 103
>ref|XP_883135.1| PREDICTED: similar to Solute carrier family 13 member 4
(Na(+)/sulfate cotransporter SUT-1) isoform 2 [Bos
taurus]
Length = 162
Score = 48.9 bits (115), Expect = 9e-06
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKV 309
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +S+V
Sbjct: 104 SSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEV 149
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,384,122
Number of Sequences: 33508
Number of extensions: 1376751
Number of successful extensions: 7881
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 5517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7808
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 4167172020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-013433
(1304 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003975.1| solute carrier family 13 (sodium-dependent dica... 407 e-113
Alignment gi|NP_808218.1| solute carrier family 13 (sodium-dependent citr... 262 5e-70
Alignment gi|NP_073740.2| solute carrier family 13 member 3 isoform a [Ho... 248 6e-66
Alignment gi|NP_001011554.1| solute carrier family 13 member 3 isoform b ... 236 3e-62
Alignment gi|NP_071889.2| solute carrier family 13 (sodium/sulfate sympor... 207 2e-53
Alignment gi|NP_036582.2| solute carrier family 13 (sodium/sulfate sympor... 176 4e-44
>ref|NP_003975.1| solute carrier family 13 (sodium-dependent dicarboxylate
transporter), member 2 [Homo sapiens]
Length = 592
Score = 407 bits (1045), Expect = e-113
Identities = 223/369 (60%), Positives = 256/369 (69%), Gaps = 12/369 (3%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y +KEAYCAY IILMAL WCTEALPLAVTA
Sbjct: 1 MATCWQALWAYRSYLIVFFVPILLLPLPILVPSKEAYCAYAIILMALFWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+ILFPMMGI+DAS+V+VEYLKDSN+LF GG+LVAIAVEHWNLHKRIALRVLLI+GVR
Sbjct: 61 LFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIVGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILGFM+VTAFLSMWISNTAT+AMMVPIAHAVL+QLH +VEEG NP FELQ
Sbjct: 121 PAPLILGFMLVTAFLSMWISNTATSAMMVPIAHAVLDQLHSSQASSNVEEGSNNPTFELQ 180
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
EPSPQ+E TKL DN Q LPV +A SE + +++ L TQ MSLCVCYSASIGGIATL
Sbjct: 181 EPSPQKEVTKL---DNGQALPVTSASSEGRAHLSQKHLHLTQCMSLCVCYSASIGGIATL 237
Query: 796 TGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSREL 975
TGT PNLVLQGQ+NS+FP+N +VVNFASWF FAFPT + F G R+
Sbjct: 238 TGTAPNLVLQGQINSLFPQNGNVVNFASWFSFAFPTMVILLLLAWLWLQILFLGFNFRKN 297
Query: 976 SARGQMKEKSER------PSSHREGAQQLGPLSFAKSRHCPL-----CQWGGLFTREQA- 1119
G+ ++ ++ + HR LGP++FA+ L W FTRE
Sbjct: 298 FGIGEKMQEQQQAAYCVIQTEHR----LLGPMTFAEKAISILFVILVLLW---FTREPGF 350
Query: 1120 FPGWGNXPF 1146
F GWGN F
Sbjct: 351 FLGWGNLAF 359
>ref|NP_808218.1| solute carrier family 13 (sodium-dependent citrate transporter),
member 5 [Homo sapiens]
Length = 568
Score = 262 bits (669), Expect = 5e-70
Identities = 146/326 (44%), Positives = 202/326 (61%), Gaps = 11/326 (3%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY IILMA+ WCTE +PLAVT+ +PV+LFP+ I+D+ +V V+Y+KD+N+LF+GG++VA
Sbjct: 38 CAYVIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVE WNLHKRIALR LL +G +PA L+LGFM VTA LSMWISNTATTAMMVPI A+L+
Sbjct: 98 VAVERWNLHKRIALRTLLWVGAKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKT---QQN 717
Q+ + +L +K ++LP E T Q++
Sbjct: 158 QMEATSAATEA-------------------GLELVDKGKAKELPGSQVIFEGPTLGQQED 198
Query: 718 EEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAF 897
+E+ R + M+LC+CY+ASIGG ATLTGT PN+VL GQ+N +FP + +VNFASWF FAF
Sbjct: 199 QERKRLCKAMTLCICYAASIGGTATLTGTGPNVVLLGQMNELFPDSKDLVNFASWFAFAF 258
Query: 898 PTWSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSH--REGAQQLGPLSFAKSR 1071
P F + + ++ G +K+E+ + +E ++LGPLSFA+
Sbjct: 259 PNMLVMLLFAWLWLQFVYMRFNFKKSWGCGLESKKNEKAALKVLQEEYRKLGPLSFAEIN 318
Query: 1072 -----HCPLCQWGGLFTREQAF-PGW 1131
+ W F+R+ F PGW
Sbjct: 319 VLICFFLLVILW---FSRDPGFMPGW 341
>ref|NP_073740.2| solute carrier family 13 member 3 isoform a [Homo sapiens]
Length = 602
Score = 248 bits (634), Expect = 6e-66
Identities = 155/388 (39%), Positives = 214/388 (55%), Gaps = 34/388 (8%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+A + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LAAAAKKVWSARRLLVLLFTPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL++L+++GV+
Sbjct: 64 LLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLVGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L +E R +P+ E +
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF------GQKEVRKDPSQESE 177
Query: 616 E-------------PSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLC 756
E P+ Q + KD+ + VP +++E + +G +
Sbjct: 178 ENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSRKEDEYRRNIWKGFLIS 237
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP----------TW 906
+ YSASIGG ATLTGT PNL+L GQ+ S FP+ VVNF SWF FAFP W
Sbjct: 238 IPYSASIGGTATLTGTAPNLILLGQLKSFFPQ-CDVVNFGSWFIFAFPLMLLFLLAGWLW 296
Query: 907 SSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSH--------REGAQQLGPLSFA 1062
S Y LS RG K KSE ++ RE Q LGP+ FA
Sbjct: 297 ISFLY---------------GGLSFRGWRKNKSEIRTNAEDRARAVIREEYQNLGPIKFA 341
Query: 1063 KSRHCPL-CQWG-GLFTREQAF-PGWGN 1137
+ L C + LFTR+ F PGW +
Sbjct: 342 EQAVFILFCMFAILLFTRDPKFIPGWAS 369
>ref|NP_001011554.1| solute carrier family 13 member 3 isoform b [Homo sapiens]
Length = 555
Score = 236 bits (602), Expect = 3e-62
Identities = 146/344 (42%), Positives = 199/344 (57%), Gaps = 34/344 (9%)
Frame = +1
Query: 208 MALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWN 387
MA+ WCTEALPL+VTA LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WN
Sbjct: 1 MAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWN 60
Query: 388 LHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPV 567
LH+RIAL++L+++GV+PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L
Sbjct: 61 LHRRIALKILMLVGVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF---- 116
Query: 568 GKDVEEGRGNPAFELQE-------------PSPQQEETKLDEKDNKQDLPVPAAPSESKT 708
+E R +P+ E +E P+ Q + KD+ + VP
Sbjct: 117 --GQKEVRKDPSQESEENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSR 174
Query: 709 QQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFG 888
+++E + +G + + YSASIGG ATLTGT PNL+L GQ+ S FP+ VVNF SWF
Sbjct: 175 KEDEYRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQ-CDVVNFGSWFI 233
Query: 889 FAFP----------TWSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSH----- 1023
FAFP W S Y LS RG K KSE ++
Sbjct: 234 FAFPLMLLFLLAGWLWISFLY---------------GGLSFRGWRKNKSEIRTNAEDRAR 278
Query: 1024 ---REGAQQLGPLSFAKSRHCPL-CQWG-GLFTREQAF-PGWGN 1137
RE Q LGP+ FA+ L C + LFTR+ F PGW +
Sbjct: 279 AVIREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPGWAS 322
>ref|NP_071889.2| solute carrier family 13 (sodium/sulfate symporters), member 1 [Homo
sapiens]
Length = 595
Score = 207 bits (526), Expect = 2e-53
Identities = 132/370 (35%), Positives = 196/370 (52%), Gaps = 28/370 (7%)
Frame = +1
Query: 106 YRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMM 285
YRR+ TKEA CAYT+ ++A W TEALPL+VTA LP ++ PM
Sbjct: 10 YRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMF 69
Query: 286 GIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMV 465
GIM + KV+ Y KD ++L IG + +A ++E WNLHKRIAL++++++GV PA L LGFM
Sbjct: 70 GIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMS 129
Query: 466 VTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPS 624
TAFLSMW+SNT+T AM++PIA AV++Q+ I +VE G N E+ E
Sbjct: 130 STAFLSMWLSNTSTAAMVMPIAEAVVQQI--INAEAEVEATQMTYFNGSTNHGLEIDESV 187
Query: 625 PQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGM----------------SLC 756
E + EK PVP +++ ++ +L GM LC
Sbjct: 188 NGHEINERKEKTK----PVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLC 243
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCG 936
+ YS++IGG+ T+TGT+ NL+ N+ +P + +NF SWF F+FP
Sbjct: 244 IAYSSTIGGLTTITGTSTNLIFAEYFNTRYP-DCRCLNFGSWFTFSFPAALIILLLSWIW 302
Query: 937 CRSSF*GSTSRELSARGQMKEKSERPSSH--REGAQQLGPLSFAKSRHCPLCQWGGL--F 1104
+ F G +E+ G+ K ++ + ++ Q+LGP+ + + L L F
Sbjct: 303 LQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPIRYQEIVTLVLFIIMALLWF 362
Query: 1105 TREQAF-PGW 1131
+R+ F PGW
Sbjct: 363 SRDPGFVPGW 372
>ref|NP_036582.2| solute carrier family 13 (sodium/sulfate symporters), member 4 [Homo
sapiens]
Length = 626
Score = 176 bits (446), Expect = 4e-44
Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 57/377 (15%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +++V+ EY K++ +L +G
Sbjct: 32 SSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTLLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL-----HKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDN----------- 663
AVL++L ++ G E + +++ P E ++E+ N
Sbjct: 152 EAVLQELVSAEDEQLVAGNSNTEEAEPISLDVKNSQPSLELIFVNEESNADLTTLMHNEN 211
Query: 664 ------------------------KQDLPVPAAPSESKTQQNEE-----QLRFTQGMSLC 756
Q+ P PS K + N + + +SL
Sbjct: 212 LNGVPSITNPIKTANQHQGKKQHPSQEKPQVLTPSPRKQKLNRKYRSHHDQMICKCLSLS 271
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP--------TWSS 912
+ YSA+IGG+ T+ GT+ +L+ N+ +P VVNF +WF F+FP +W
Sbjct: 272 ISYSATIGGLTTIIGTSTSLIFLEHFNNQYPA-AEVVNFGTWFLFSFPISLIMLVVSWFW 330
Query: 913 CCY-FPGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLGPLSFAK--SRHCPL 1083
+ F GC + + + ++ + R Q+ EK +E ++LG +S+ + + +
Sbjct: 331 MHWLFLGCNFKETC-SLSKKKKTKREQLSEK-----RIQEEYEKLGDISYPEMVTGFFFI 384
Query: 1084 CQWGGLFTREQAF-PGW 1131
FTRE F PGW
Sbjct: 385 LMTVLWFTREPGFVPGW 401
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,240,036
Number of Sequences: 39411
Number of extensions: 1653323
Number of successful extensions: 10088
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10003
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4486370336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-013433
(1304 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868153.1| PREDICTED: similar to Solute carrier family 13,... 426 e-119
Alignment gi|XP_548287.1| PREDICTED: similar to Solute carrier family 13,... 422 e-118
Alignment gi|XP_848573.1| PREDICTED: similar to solute carrier family 13 ... 271 1e-72
Alignment gi|XP_543034.2| PREDICTED: similar to Solute carrier family 13,... 240 3e-63
Alignment gi|XP_539548.2| PREDICTED: similar to solute carrier family 13 ... 190 3e-48
Alignment gi|XP_852780.1| PREDICTED: similar to Solute carrier family 13,... 178 1e-44
>ref|XP_868153.1| PREDICTED: similar to Solute carrier family 13, member 2 (Renal
sodium/dicarboxylate cotransporter) (Na(+)/dicarboxylate
cotransporter 1) (NaDC-1) isoform 2 [Canis familiaris]
Length = 597
Score = 426 bits (1094), Expect = e-119
Identities = 233/368 (63%), Positives = 263/368 (71%), Gaps = 11/368 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEAYCAY+IILMAL WCTEALPL VTA
Sbjct: 1 MATCWQGLWAYRSYLIVLLLPILLLPLPILIPTKEAYCAYSIILMALFWCTEALPLPVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+IL+PMMGIMDAS+V +EY KDSNILF+GG+L+AIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 61 LFPIILYPMMGIMDASEVCIEYFKDSNILFVGGLLMAIAVEHWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMMVPIAHAVLEQLH KDVEEG NP FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMVPIAHAVLEQLHN--TSKDVEEGSDNPTFELQ 178
Query: 616 EPSPQQEETKLDEKD---NKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGI 786
E SPQ++ TKL EKD N Q P A SES Q EQLRF+QGMSLCVCYSASIGGI
Sbjct: 179 EGSPQKDVTKLGEKDEAHNGQAHPALPASSESTVWQKREQLRFSQGMSLCVCYSASIGGI 238
Query: 787 ATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTS 966
ATLTGTTPNLVLQGQVN++FP+N +VVNFASWFGFAFPT + + F G
Sbjct: 239 ATLTGTTPNLVLQGQVNALFPQNGNVVNFASWFGFAFPTMAILLLLSWLWLQILFLGFNF 298
Query: 967 RELSARGQMKEKSERPSSH--REGAQQLGPLSFAKSRHCPL-----CQWGGLFTREQA-F 1122
R+ G ++ E+ + H + ++LGP++FA+ L W FTRE F
Sbjct: 299 RKNFGFGGQAKEREQAAFHVIQTEHKRLGPMTFAEKAVSVLFIILVVLW---FTREPGFF 355
Query: 1123 PGWGNXPF 1146
GWGN F
Sbjct: 356 LGWGNLAF 363
>ref|XP_548287.1| PREDICTED: similar to Solute carrier family 13, member 2 (Renal
sodium/dicarboxylate cotransporter) (Na(+)/dicarboxylate
cotransporter 1) (NaDC-1) isoform 1 [Canis familiaris]
Length = 591
Score = 422 bits (1085), Expect = e-118
Identities = 231/365 (63%), Positives = 261/365 (71%), Gaps = 8/365 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEAYCAY+IILMAL WCTEALPL VTA
Sbjct: 1 MATCWQGLWAYRSYLIVLLLPILLLPLPILIPTKEAYCAYSIILMALFWCTEALPLPVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+IL+PMMGIMDAS+V +EY KDSNILF+GG+L+AIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 61 LFPIILYPMMGIMDASEVCIEYFKDSNILFVGGLLMAIAVEHWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMMVPIAHAVLEQLH KDVEEG NP FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMVPIAHAVLEQLHN--TSKDVEEGSDNPTFELQ 178
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E SPQ++ TKL DN Q P A SES Q EQLRF+QGMSLCVCYSASIGGIATL
Sbjct: 179 EGSPQKDVTKL---DNGQAHPALPASSESTVWQKREQLRFSQGMSLCVCYSASIGGIATL 235
Query: 796 TGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSREL 975
TGTTPNLVLQGQVN++FP+N +VVNFASWFGFAFPT + + F G R+
Sbjct: 236 TGTTPNLVLQGQVNALFPQNGNVVNFASWFGFAFPTMAILLLLSWLWLQILFLGFNFRKN 295
Query: 976 SARGQMKEKSERPSSH--REGAQQLGPLSFAKSRHCPL-----CQWGGLFTREQA-FPGW 1131
G ++ E+ + H + ++LGP++FA+ L W FTRE F GW
Sbjct: 296 FGFGGQAKEREQAAFHVIQTEHKRLGPMTFAEKAVSVLFIILVVLW---FTREPGFFLGW 352
Query: 1132 GNXPF 1146
GN F
Sbjct: 353 GNLAF 357
>ref|XP_848573.1| PREDICTED: similar to solute carrier family 13 (sodium-dependent
citrate transporter), member 5 [Canis familiaris]
Length = 571
Score = 271 bits (692), Expect = 1e-72
Identities = 159/331 (48%), Positives = 205/331 (61%), Gaps = 16/331 (4%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY IILMA+ WCTE +PLAVT+ LP +LFP++ I+D+ +V V+Y+KD+N+LF+GG+++A
Sbjct: 38 CAYVIILMAIYWCTEVIPLAVTSLLPAVLFPLLKILDSKQVCVQYMKDTNMLFLGGLIMA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
AVEHWNLHKRIALR LL +G +PA L+LGFM VTAFLSMWISNTATTAMMVPI A+L+
Sbjct: 98 AAVEHWNLHKRIALRTLLWVGAKPAQLMLGFMGVTAFLSMWISNTATTAMMVPIVEAMLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ E G G +L +K+ +LP E S+ QQ +
Sbjct: 158 QMQ--ATSPATEAGLG--------------ALELSDKNKAGELPGSQVTFEGPSEVQQAD 201
Query: 721 -EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAF 897
++ R + M+LCVCY+ASIGG ATLTGT PN+VL GQ++ +FP + VVNFASWF FAF
Sbjct: 202 CDRRRICKAMTLCVCYAASIGGTATLTGTGPNMVLLGQMHELFPASKDVVNFASWFSFAF 261
Query: 898 PT----------WSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLG 1047
P W C Y RSSF L +R K E RE ++LG
Sbjct: 262 PNMVAMLLLAWLWLQCVYM-----RSSFRKFWGCGLQSRNHEKVAYE---VLREEYRKLG 313
Query: 1048 PLSFAKSR--HCPLCQWGGLFTREQAF-PGW 1131
SFA++ C L G F+R+ F PGW
Sbjct: 314 SFSFAEANVLLCFLLMVGLWFSRDPGFMPGW 344
>ref|XP_543034.2| PREDICTED: similar to Solute carrier family 13, member 3
(Sodium-dependent high-affinity dicarboxylate transporter
2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3)
(hNaDC3) [Canis familiaris]
Length = 601
Score = 240 bits (612), Expect = 3e-63
Identities = 153/371 (41%), Positives = 207/371 (55%), Gaps = 17/371 (4%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+AT + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LATVAKKVWSARRLLVLLLAPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP+ILFP +GI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL++L++ GV+
Sbjct: 64 LLPIILFPFLGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLAGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQL-HKIPVGKDV--EEGRGNPAF 606
PA LILG MV T+FLSMW+SNTA+TAMM+PIA A+L+ L + KD+ + A
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSLFSQKEAQKDLSWQSDENTAAV 183
Query: 607 ELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKTQ-QNEEQLR--FTQGMSLCVCYSASI 777
P E + +D P AP + + EE+ R +G + + YSASI
Sbjct: 184 RRNGLHPVPTEMQFLASTEDKDCPEAEAPLDLLADCKKEEEYRRNIWKGFLISIPYSASI 243
Query: 778 GGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*G 957
GG ATLTGT PNL+L GQ+ S FP+ VVNF SWF FAFP + G
Sbjct: 244 GGTATLTGTAPNLILLGQLKSFFPQ-CDVVNFGSWFIFAFPLMVLFLLVGWLWISFLYGG 302
Query: 958 STSRELSARGQMKEKSERPSSH--------REGAQQLGPLSFAKSRHCPL-CQWG-GLFT 1107
T RG K+KSE S RE Q LGP+ FA+ L C + LF+
Sbjct: 303 MT-----LRGWRKKKSEIKSVAEDRARAVIREEFQNLGPIKFAEQAVFTLFCMFAILLFS 357
Query: 1108 REQAF-PGWGN 1137
R+ F PGW +
Sbjct: 358 RDPKFIPGWAS 368
>ref|XP_539548.2| PREDICTED: similar to solute carrier family 13 (sodium/sulfate
symporters), member 1 [Canis familiaris]
Length = 596
Score = 190 bits (482), Expect = 3e-48
Identities = 127/349 (36%), Positives = 186/349 (53%), Gaps = 29/349 (8%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVE-YLKDSNILFI 348
TKEA CAYT ++A LW TEALPL VTA LP +LFP+ GI + +V Y KD ++L I
Sbjct: 32 TKEAECAYTWAVVAALWLTEALPLPVTALLPGLLFPLFGITASKEVVASAYFKDFHLLLI 91
Query: 349 GGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPI 528
G + +A ++E WNLH RIALR+++ +GV P L LG M TAFLSMW+SNT+T AM++PI
Sbjct: 92 GVICLATSIEKWNLHTRIALRMVMTVGVNPTWLTLGLMSSTAFLSMWLSNTSTAAMVMPI 151
Query: 529 AHAVLEQLHKIPVGKDVEE-------GRGNPAFELQEPSPQQEETKLDEKDNKQDLPVP- 684
AV +Q+ I +VE G N E+ E QE + +EK +P P
Sbjct: 152 VEAVAQQI--ISAQAEVEATQMTSLGGSTNHGLEIDESVNGQETNERNEK----TIPAPG 205
Query: 685 ----AAPSESKTQ-----------QNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLV 819
A SKT+ + ++ + M LC+ YS++IGG+ T+TGT+ NL+
Sbjct: 206 YGNDAGKISSKTEPEKNSDTGTKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLI 265
Query: 820 LQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSRELSARGQMKE 999
N+ +P + +NF SWF +FP + F G +E+ G+ K
Sbjct: 266 FSEHFNTRYP-DCRCINFGSWFLLSFPAAVIILLLSWIWLQWLFLGFNFKEMFKCGKTKT 324
Query: 1000 KSERPSSH--REGAQQLGPLSFAKSRHCPLCQWGGL--FTREQAF-PGW 1131
++ + ++ Q+LGP+ + + L L F+R+ F PGW
Sbjct: 325 AKQKACAEVIKQEYQKLGPMRYQEIVTLILFIVMALLWFSRDPGFVPGW 373
>ref|XP_852780.1| PREDICTED: similar to Solute carrier family 13, member 4
(Na(+)/sulfate cotransporter SUT-1) [Canis familiaris]
Length = 626
Score = 178 bits (451), Expect = 1e-44
Identities = 121/380 (31%), Positives = 191/380 (50%), Gaps = 60/380 (15%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 32 SSEAACAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAAEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL----------------HKIPVGKDVEEGRGNPAFEL----QEPSPQQEETKLD 651
AVL++L P+ DV + P+ EL ++PS + +
Sbjct: 152 EAVLQELVSAEEEQLVAGNSSAEEAEPISLDVNNSQ--PSLELIFVNEDPSTADFASLMQ 209
Query: 652 EKDNKQDLPVPAAPSESKTQQNEEQLR----------------------------FTQGM 747
K N +P P ++ Q ++Q R + +
Sbjct: 210 NK-NLNGVPTVTNPVKTANPQGKKQHRSQEKPLVLIPGPRNQELNRKYKSQHDQMICKCL 268
Query: 748 SLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP--------T 903
SL + Y+A+IGG+ T+ GT+ +L+ N+ +P VVNF +WF F+FP +
Sbjct: 269 SLSISYAATIGGLTTIIGTSTSLIFLEHFNNQYPA-AEVVNFGTWFLFSFPISLIMLVVS 327
Query: 904 WSSCCY-FPGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLGPLSFAK--SRH 1074
W + F GC R + LS + + K + +E ++LG +S+ + +
Sbjct: 328 WFWMHWLFLGCNFRETC------SLSKKKKTKREELSEKRIQEEYEKLGAISYPEMVTGF 381
Query: 1075 CPLCQWGGLFTREQAF-PGW 1131
+ FTRE F PGW
Sbjct: 382 FFILMTVLWFTREPGFVPGW 401
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,609,901
Number of Sequences: 33732
Number of extensions: 1623172
Number of successful extensions: 9694
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9536
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5146639144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-013433
(1304 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071856.1| solute carrier family 13 (sodium-dependent dica... 405 e-113
Alignment gi|NP_001004148.1| solute carrier family 13 (sodium-dependent c... 251 2e-66
Alignment gi|XP_917377.2| PREDICTED: similar to solute carrier family 13 ... 251 2e-66
Alignment gi|NP_473396.1| solute carrier family 13 (sodium-dependent dica... 239 4e-63
Alignment gi|NP_062354.1| solute carrier family 13 (sodium/sulphate sympo... 194 1e-49
Alignment gi|NP_766480.1| solute carrier family 13 (sodium/sulfate sympor... 181 2e-45
>ref|NP_071856.1| solute carrier family 13 (sodium-dependent dicarboxylate
transporter), member 2 [Mus musculus]
Length = 586
Score = 405 bits (1040), Expect = e-113
Identities = 225/365 (61%), Positives = 259/365 (70%), Gaps = 8/365 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y TKEAYCAY+IILMALLWCTEALPLAVTA
Sbjct: 1 MATCWQALWAYRSYLIVLCLPIFLLPLPLIVQTKEAYCAYSIILMALLWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+ILFP+MGIM+ASKV +EY KD+NILF+GG++VAIAVEHWNLHKRIAL VLLIIGVR
Sbjct: 61 LFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMM+PI +AVLEQL KDVEEG NP+FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMLPIGYAVLEQLQGSQ--KDVEEGNSNPSFELQ 178
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E SPQ+EETKL DN Q + V SE + Q+ +E RF+QG+SLC+CYSASIGGIATL
Sbjct: 179 EASPQKEETKL---DNGQAVSV---SSEPRAQKTKEHHRFSQGLSLCICYSASIGGIATL 232
Query: 796 TGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFPTWSSCCYFPGCGCRSSF*GSTSREL 975
TGTTPNLVLQGQVNSIFP N +VVNFASWFGFAFPT + F G R+
Sbjct: 233 TGTTPNLVLQGQVNSIFPENSNVVNFASWFGFAFPTMVILLLLAWLWLQVLFLGVNFRKN 292
Query: 976 SARGQMKEKSERPSSHREGAQQ--LGPLSFAKSRHCPL-----CQWGGLFTREQA-FPGW 1131
G+ +E+ ++ + Q LGP+SFA+ L W FTRE FPGW
Sbjct: 293 FGFGEGEEERKQAAFQVIKTQHRLLGPMSFAEKAVTFLFVLLVVLW---FTREPGFFPGW 349
Query: 1132 GNXPF 1146
G+ F
Sbjct: 350 GDTAF 354
>ref|NP_001004148.1| solute carrier family 13 (sodium-dependent citrate transporter),
member 5 [Mus musculus]
Length = 572
Score = 251 bits (640), Expect = 2e-66
Identities = 142/337 (42%), Positives = 200/337 (59%), Gaps = 18/337 (5%)
Frame = +1
Query: 175 KEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGG 354
K A CAY I++MA+ WCT+ +P+AVT+ LPV+LFP++ ++D+ +V ++Y+KD+N+LF+G
Sbjct: 34 KFARCAYVIVIMAVYWCTDVIPVAVTSLLPVLLFPLLKVLDSKQVCIQYMKDTNMLFLGS 93
Query: 355 MLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAH 534
++VA+AVE W LHKR+ALR+LL +G +P+ L+LGFM VTAFLSMWISNTA TAMM+PI
Sbjct: 94 LIVAVAVERWKLHKRVALRMLLFVGTKPSRLMLGFMFVTAFLSMWISNTAATAMMIPIVE 153
Query: 535 AVLEQLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSES---K 705
A+L+Q+ I VE G +L +K+ +LP E +
Sbjct: 154 AMLQQM--IAANTAVEASLGT--------------LELLDKNKTSELPGSQVVFEDPNVQ 197
Query: 706 TQQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWF 885
Q++EE + M LCVCYSASIGG ATLTGT PN+VL GQ+ +FP + V+N+ASWF
Sbjct: 198 EQEDEETKNMYKAMHLCVCYSASIGGTATLTGTGPNVVLLGQMQELFPDSKDVLNYASWF 257
Query: 886 GFAFPT----------WSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSH--RE 1029
GFAFP W C Y + + G+ K +E+ + E
Sbjct: 258 GFAFPNMVMMLVLAWLWLQCLYMR---------HNLKKTCICCGEKKRDTEKIAYKVLNE 308
Query: 1030 GAQQLGPLSFAKSR--HCPLCQWGGLFTREQAF-PGW 1131
Q+LG LS+ + C F+R+ F PGW
Sbjct: 309 EYQKLGSLSYPECNVLFCFTLLVILWFSRDPGFMPGW 345
>ref|XP_917377.2| PREDICTED: similar to solute carrier family 13 (sodium-dependent
citrate transporter), member 5 [Mus musculus]
Length = 434
Score = 251 bits (640), Expect = 2e-66
Identities = 142/337 (42%), Positives = 200/337 (59%), Gaps = 18/337 (5%)
Frame = +1
Query: 175 KEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGG 354
K A CAY I++MA+ WCT+ +P+AVT+ LPV+LFP++ ++D+ +V ++Y+KD+N+LF+G
Sbjct: 34 KFARCAYVIVIMAVYWCTDVIPVAVTSLLPVLLFPLLKVLDSKQVCIQYMKDTNMLFLGS 93
Query: 355 MLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAH 534
++VA+AVE W LHKR+ALR+LL +G +P+ L+LGFM VTAFLSMWISNTA TAMM+PI
Sbjct: 94 LIVAVAVERWKLHKRVALRMLLFVGTKPSRLMLGFMFVTAFLSMWISNTAATAMMIPIVE 153
Query: 535 AVLEQLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSES---K 705
A+L+Q+ I VE G +L +K+ +LP E +
Sbjct: 154 AMLQQM--IAANTAVEASLGT--------------LELLDKNKTSELPGSQVVFEDPNVQ 197
Query: 706 TQQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWF 885
Q++EE + M LCVCYSASIGG ATLTGT PN+VL GQ+ +FP + V+N+ASWF
Sbjct: 198 EQEDEETKNMYKAMHLCVCYSASIGGTATLTGTGPNVVLLGQMQELFPDSKDVLNYASWF 257
Query: 886 GFAFPT----------WSSCCYFPGCGCRSSF*GSTSRELSARGQMKEKSERPSSH--RE 1029
GFAFP W C Y + + G+ K +E+ + E
Sbjct: 258 GFAFPNMVMMLVLAWLWLQCLYMR---------HNLKKTCICCGEKKRDTEKIAYKVLNE 308
Query: 1030 GAQQLGPLSFAKSR--HCPLCQWGGLFTREQAF-PGW 1131
Q+LG LS+ + C F+R+ F PGW
Sbjct: 309 EYQKLGSLSYPECNVLFCFTLLVILWFSRDPGFMPGW 345
>ref|NP_473396.1| solute carrier family 13 (sodium-dependent dicarboxylate
transporter), member 3 [Mus musculus]
Length = 600
Score = 239 bits (611), Expect = 4e-63
Identities = 152/374 (40%), Positives = 212/374 (56%), Gaps = 20/374 (5%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+A + +W+ RR KE C Y I+LMA+ WCTEALPL+VTA
Sbjct: 4 LAALAKKVWSARRLLVLLLVPLALLPILFALPPKEGRCLYVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP+ILFP MGI+ +SKV +Y D+N LF+ G+++A A+E WNLH+RIAL+VL+++GV+
Sbjct: 64 LLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLVGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLH-KIPVGKDVEEGRGNPAFEL 612
PA LILG MV T+FLSMW+SNTA+TAMM+PIA A+L+ L + KD+ +
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSLFGQREARKDLPREGDESTAAV 183
Query: 613 QEPSPQQEETKL-----DEKDNKQDLPVP-AAPSESKTQQNEEQLRFTQGMSLCVCYSAS 774
Q + T++ E + +D P P +SK + E + +G + + YSAS
Sbjct: 184 QGNGLRTVPTEMQFLASSEGGHTEDAEAPMELPDDSK--EEEHRRNIWKGFLISIPYSAS 241
Query: 775 IGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP----------TWSSCCYF 924
IGG ATLTGT PNL+L GQ+ S FP+ VVNF SWF FAFP W S Y
Sbjct: 242 IGGTATLTGTAPNLILLGQLKSFFPQ-CDVVNFGSWFIFAFPLMLLFLLVGWLWISFLY- 299
Query: 925 PGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLGPLSFAKSRHCPL-CQWG-G 1098
G RS R+ ++ + + + + +E Q LGP+ FA+ L C +
Sbjct: 300 GGMSWRS------WRKKKSKIRADAEDQAKAVIQEEFQNLGPIKFAEQAVFILFCTFAIL 353
Query: 1099 LFTREQAF-PGWGN 1137
LF+R+ F PGW +
Sbjct: 354 LFSRDPKFIPGWAS 367
>ref|NP_062354.1| solute carrier family 13 (sodium/sulphate symporters), member 1
[Mus musculus]
Length = 594
Score = 194 bits (494), Expect = 1e-49
Identities = 111/287 (38%), Positives = 162/287 (56%), Gaps = 22/287 (7%)
Frame = +1
Query: 106 YRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMM 285
YRR+ TKEA CAY + ++A+ W TEALPL++TA LP ++FPM
Sbjct: 10 YRRFLLVVFTILVFLPLPLIIRTKEAQCAYILFVIAIFWITEALPLSITALLPGLMFPMF 69
Query: 286 GIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMV 465
GIM +S+V+ Y KD ++L IG + +A ++E WNLHKRIALR+++++GV PA L LGFM
Sbjct: 70 GIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMS 129
Query: 466 VTAFLSMWISNTATTAMMVPIAHAVLEQL--------------------HKIPVGKDVEE 585
TAFLSMW+SNT+T AM++PI AV +Q+ H + + + V
Sbjct: 130 STAFLSMWLSNTSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLDIDETVIG 189
Query: 586 GRGNPAFELQEPSP--QQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCV 759
N E +P+P ++ K+ K + V A S+ +L M L V
Sbjct: 190 QETNEKKEKTKPAPGSSHDKGKVSRKMETEKNAVTGAKYRSRKDHMMCKL-----MCLSV 244
Query: 760 CYSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP 900
YS++IGG+ T+TGT+ NL+ N+ +P + +NF SWF F+FP
Sbjct: 245 AYSSTIGGLTTITGTSTNLIFSEHFNTRYP-DCRCLNFGSWFLFSFP 290
>ref|NP_766480.1| solute carrier family 13 (sodium/sulfate symporters), member 4 [Mus
musculus]
Length = 625
Score = 181 bits (459), Expect = 2e-45
Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 56/376 (14%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
T EA CAY +++ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 32 TSEAACAYVLLVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAAEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL-----HKIPVGKDVEEGRG------NPAFEL---QEPSPQQEETKLDEKDNKQ 669
AVL++L ++ G + E G + EL E + + T L + N
Sbjct: 152 EAVLQELINAEEEQLAAGTEEAELMGLDVNNRQTSMELIFVNEDTSAADFTSLMQSKNLN 211
Query: 670 DLPV----------------------PAAPS-ESKTQQ-NEEQLRFTQGMSLCVC----- 762
+P+ P P+ SKTQ+ N+++ R +C C
Sbjct: 212 GVPMVTKSINTANQQQQKKQQPSQEKPGVPTPSSKTQELNKKKYRSHHDQMICKCLSLSI 271
Query: 763 -YSASIGGIATLTGTTPNLVLQGQVNSIFPRNPHVVNFASWFGFAFP--------TWSSC 915
Y+A+IGG+ T+ GT+ +L+ N+ +P VVNF +WF F+FP +W
Sbjct: 272 SYAATIGGLTTIIGTSTSLIFLEHFNNQYPA-AEVVNFGTWFLFSFPISLIMLVVSWFWI 330
Query: 916 CY-FPGCGCRSSF*GSTSRELSARGQMKEKSERPSSHREGAQQLGPLSFAK--SRHCPLC 1086
+ F GC + + + ++ + R ++ EK RE ++LG +S+ + + +
Sbjct: 331 HWLFLGCNFKETC-SLSKKKKTRREELSEK-----RIREEYEKLGDISYPEMVTAFFFIL 384
Query: 1087 QWGGLFTREQAF-PGW 1131
FTRE F PGW
Sbjct: 385 MTVLWFTREPGFVPGW 400
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,117,346
Number of Sequences: 45328
Number of extensions: 1806233
Number of successful extensions: 10878
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10338
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5564230376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)