BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-015082 (1138 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001004039.1| SLA-DM alpha chain [Sus scrofa] 74 6e-15 Alignment gi|NP_999143.1| beta 2-microglobulin [Sus scrofa] 71 4e-14 Alignment gi|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa] 52 3e-08 Alignment gi|NP_999362.2| neonatal Fc receptor FcRn [Sus scrofa] 45 4e-06 >ref|NP_001004039.1| SLA-DM alpha chain [Sus scrofa] Length = 260 Score = 73.9 bits (180), Expect = 6e-15 Identities = 38/106 (35%), Positives = 56/106 (52%) Frame = +2 Query: 344 VPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSF 523 +P VF P+ G+PNTL+C V N+FPP + +TW ++ + EG T + +D SF Sbjct: 126 LPIAEVFTLKPLEFGKPNTLVCFVSNLFPPALTVTW-EHHSAPVEGIGPTFVSATDDLSF 184 Query: 524 LKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 661 SYL F P+ D + C V H + +W P+ P S+L E Sbjct: 185 QAFSYLNFTPTPSDLFSCVVTHELDGYVAISYWVPQNALP-SDLLE 229 >ref|NP_999143.1| beta 2-microglobulin [Sus scrofa] Length = 118 Score = 71.2 bits (173), Expect = 4e-14 Identities = 38/98 (38%), Positives = 53/98 (54%) Frame = +2 Query: 332 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 511 AV + P+V V+ + P G+PN L C+V PP I I LKNG + S+ SF Sbjct: 20 AVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMNAEQSDLSF--SK 77 Query: 512 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 625 D SF + + F P+ D Y C+V+H LDKP + W+ Sbjct: 78 DWSFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKWD 115 >ref|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa] Length = 401 Score = 51.6 bits (122), Expect = 3e-08 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = +2 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TL C +P I++TW + G ++ D +F K + L P ++ Y C Sbjct: 221 TLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTC 280 Query: 578 KVEHWGLDKPLLKHWEPEIP 637 V+H GL +PL W+P P Sbjct: 281 HVQHEGLQEPLTLRWDPPQP 300 >ref|NP_999362.2| neonatal Fc receptor FcRn [Sus scrofa] Length = 356 Score = 44.7 bits (104), Expect = 4e-06 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Frame = +2 Query: 365 PKSPVMLGQPNT------LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P S M +P T L C + +PP + + +L+NG + G E+ D SF Sbjct: 202 PPSMRMKARPGTAPGFSVLTCIAFSFYPPELQLRFLRNG--LAAGSGESDIGPNGDGSFH 259 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMS 649 S LT D+ Y C V+H GL +PL E E PA S Sbjct: 260 AWSSLTVKSGDEHHYCCVVQHAGLAQPLTV--ELESPAKSS 298 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 992,528 Number of Sequences: 1040 Number of extensions: 23387 Number of successful extensions: 61 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 58 length of database: 434,620 effective HSP length: 78 effective length of database: 353,500 effective search space used: 106050000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-015082 (1138 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001013619.2| histocompatibility complex, class II, DQ alp... 291 1e-96 Alignment gi|NP_001012693.1| major histocompatibility complex, class II, ... 269 4e-90 Alignment gi|NP_001012699.1| major histocompatibility complex, class II, ... 239 1e-80 Alignment gi|NP_001012696.1| major histocompatibility complex, class II, ... 222 3e-71 Alignment gi|XP_604082.2| PREDICTED: similar to HLA class II histocompati... 190 6e-54 Alignment gi|XP_883292.1| PREDICTED: similar to HLA class II histocompati... 188 3e-53 Alignment gi|NP_001012695.1| major histocompatibility complex, class II, ... 192 3e-49 Alignment gi|NP_776318.1| beta-2-microglobulin [Bos taurus] 71 1e-12 Alignment gi|NP_001013618.1| major histocompatibility complex, class II, ... 65 8e-11 Alignment gi|NP_001029840.2| MHC class II antigen [Bos taurus] 65 1e-10 >ref|NP_001013619.2| histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus] Length = 255 Score = 291 bits (744), Expect(2) = 1e-96 Identities = 140/186 (75%), Positives = 153/186 (82%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP+FSKF +FDPQGALRNIAT KHNL I+I+RSN+TAA N+VPEVTVF KSPVMLGQPN Sbjct: 70 RLPVFSKFATFDPQGALRNIATTKHNLEIVIQRSNSTAATNKVPEVTVFSKSPVMLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLICHVDNIFPPVINITWL+NGHSVTEG SETSFL K+D+SFLKI+YLTFLPSDDD YDC Sbjct: 130 TLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKSDYSFLKINYLTFLPSDDDVYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEP+IPAPMSELTET LRSGGPS Sbjct: 190 KVEHWGLDEPLLKHWEPDIPAPMSELTETVVCALGLTVGLVGIMVGTILIIQGLRSGGPS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 81.6 bits (200), Expect(2) = 1e-96 Identities = 35/55 (63%), Positives = 44/55 (80%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 MV R L+ GALALT +MS G EDI ADH+ +YG+++Y +YGPSGYYTHEFDG+ Sbjct: 1 MVLNRALILGALALTTMMSPSGSEDIVADHIGTYGISIYHTYGPSGYYTHEFDGD 55 >ref|NP_001012693.1| major histocompatibility complex, class II, DQ alpha [Bos taurus] Length = 255 Score = 269 bits (688), Expect(2) = 4e-90 Identities = 133/186 (71%), Positives = 144/186 (77%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLPLFS+ SFDPQ ALRNIA K +++ L K SN+TAA N+VPEVTVF KSPVMLGQPN Sbjct: 70 QLPLFSRMLSFDPQLALRNIAIMKLHVDFLTKFSNSTAATNKVPEVTVFSKSPVMLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLICHVDNIFPPVINITWL+NGHSVTEG SETSFL ++D+SFLKI YL FLPSDDD YDC Sbjct: 130 TLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIRSDYSFLKIKYLAFLPSDDDIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRSG PS Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETVVCTLGLTMGLVGITVGTIFIIQGLRSGDPS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 81.6 bits (200), Expect(2) = 4e-90 Identities = 37/55 (67%), Positives = 43/55 (78%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 MV R L+ G LALT +MS GGEDI ADHV YG+++YQSYGPSG YTHEFDG+ Sbjct: 1 MVLNRALILGTLALTTMMSPSGGEDIVADHVGIYGISIYQSYGPSGQYTHEFDGD 55 >ref|NP_001012699.1| major histocompatibility complex, class II, DQ alpha 1 [Bos taurus] Length = 268 Score = 239 bits (611), Expect(2) = 1e-80 Identities = 110/135 (81%), Positives = 121/135 (89%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP+FS+F FDPQ AL IATAKHNL++L KRSN T +N+VPEVTVF KSPVMLGQPN Sbjct: 70 RLPMFSQFAGFDPQAALSEIATAKHNLDVLTKRSNFTPVINEVPEVTVFSKSPVMLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLICHVDNIFPPVINITWLKNGH+VTEG SETSFL K+DHSFLKI YLTFLPSD+D YDC Sbjct: 130 TLICHVDNIFPPVINITWLKNGHAVTEGVSETSFLPKDDHSFLKIGYLTFLPSDNDIYDC 189 Query: 578 KVEHWGLDKPLLKHW 622 KVEHWGLD+PLLKHW Sbjct: 190 KVEHWGLDEPLLKHW 204 Score = 79.7 bits (195), Expect(2) = 1e-80 Identities = 37/55 (67%), Positives = 43/55 (78%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 MV R L+ GALALT +MS+ GGEDI ADHV SYG +YQS+GPSG YT EFDG+ Sbjct: 1 MVLNRALILGALALTTMMSSSGGEDIVADHVGSYGTEIYQSHGPSGQYTQEFDGD 55 >ref|NP_001012696.1| major histocompatibility complex, class II, DY alpha [Bos taurus] Length = 253 Score = 222 bits (565), Expect(2) = 3e-71 Identities = 102/149 (68%), Positives = 121/149 (81%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP FS F+ Q ALRNI +K NL+ILIK S+ T A +++PEV VFPKS V+LG PN Sbjct: 68 RLPEFSNITKFEVQSALRNIVMSKRNLDILIKNSSFTPATSEIPEVAVFPKSSVVLGIPN 127 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPVINITW NGH V EG +ET+F K+DHSFLK SYLTFLP+++DFYDC Sbjct: 128 TLICQVDNIFPPVINITWFYNGHFVAEGIAETTFYPKSDHSFLKFSYLTFLPTNEDFYDC 187 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTET 664 +VEHWGL++PL+KHWEPEIP P SELTET Sbjct: 188 RVEHWGLEEPLVKHWEPEIPTPTSELTET 216 Score = 65.9 bits (159), Expect(2) = 3e-71 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +3 Query: 66 RVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 + L+ AL L +MS GGEDI ADHV +YG NVYQ+YG SG +T EFDG+ Sbjct: 3 KALILRALTLATMMSPYGGEDIVADHVGTYGTNVYQTYGASGQFTFEFDGD 53 >ref|XP_604082.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 1 [Bos taurus] Length = 250 Score = 190 bits (483), Expect(2) = 6e-54 Identities = 88/149 (59%), Positives = 107/149 (71%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP F F FDPQ L +IA K +L L+KRSN T A N P V V PKS V LG+PN Sbjct: 70 RLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNVSPRVAVLPKSHVQLGEPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 LIC VD IFPPVINITWL+NGH VT+G +++SF ++ DH F K YLTF+P DDFYDC Sbjct: 130 VLICIVDKIFPPVINITWLRNGHPVTQGVTQSSFYAQPDHLFRKFHYLTFVPLVDDFYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTET 664 KVEHWGLD+PL +HWEP++P + + T T Sbjct: 190 KVEHWGLDQPLFQHWEPQVPTALPDTTGT 218 Score = 39.7 bits (91), Expect(2) = 6e-54 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = +3 Query: 72 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDG 215 L+ G L ++S I ADH+ SYG YQSY +G +T++FDG Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDG 54 >ref|XP_883292.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 2 [Bos taurus] Length = 251 Score = 188 bits (477), Expect(2) = 3e-53 Identities = 88/150 (58%), Positives = 108/150 (72%), Gaps = 1/150 (0%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVN-QVPEVTVFPKSPVMLGQP 394 +LP F F FDPQ L +IA K +L L+KRSN T A N P+V V PKS V LG+P Sbjct: 70 RLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNGSTPQVAVLPKSHVQLGEP 129 Query: 395 NTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYD 574 N LIC VD IFPPVINITWL+NGH VT+G +++SF ++ DH F K YLTF+P DDFYD Sbjct: 130 NVLICIVDKIFPPVINITWLRNGHPVTQGVTQSSFYAQPDHLFRKFHYLTFVPLVDDFYD 189 Query: 575 CKVEHWGLDKPLLKHWEPEIPAPMSELTET 664 CKVEHWGLD+PL +HWEP++P + + T T Sbjct: 190 CKVEHWGLDQPLFQHWEPQVPTALPDTTGT 219 Score = 39.7 bits (91), Expect(2) = 3e-53 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = +3 Query: 72 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDG 215 L+ G L ++S I ADH+ SYG YQSY +G +T++FDG Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDG 54 >ref|NP_001012695.1| major histocompatibility complex, class II, DR alpha [Bos taurus] Length = 253 Score = 192 bits (489), Expect = 3e-49 Identities = 90/148 (60%), Positives = 109/148 (73%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP F F SF+ QGAL N+A K NL+I+IKRSNNT N PEVT+ P PV LG+PN Sbjct: 68 RLPEFGHFASFEAQGALANMAVMKANLDIMIKRSNNTPNTNVPPEVTLLPNKPVELGEPN 127 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC +D PPVI++TWL+NG VT+G S+T FL +NDH F K YL FLP+ +D YDC Sbjct: 128 TLICFIDKFSPPVISVTWLRNGKPVTDGVSQTVFLPRNDHLFRKFHYLPFLPTTEDVYDC 187 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTE 661 KVEH GL++PLLKHWE E PAP+ E TE Sbjct: 188 KVEHLGLNEPLLKHWEYEAPAPLPETTE 215 >ref|NP_776318.1| beta-2-microglobulin [Bos taurus] Length = 118 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/101 (34%), Positives = 56/101 (55%) Frame = +2 Query: 332 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 511 A+ + P++ V+ + P G+PN L C+V PP I I LKNG + S+ SF Sbjct: 20 AIQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSF--SK 77 Query: 512 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 634 D SF +S+ F P+ D Y C+V+H L++P + W+ ++ Sbjct: 78 DWSFYLLSHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDRDL 118 >ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus] Length = 271 Score = 65.5 bits (158), Expect = 8e-11 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Frame = +2 Query: 275 IATAKHNLNILIKRSNNTAAVNQV-----PEVTVFPKSPVMLGQPNTLICHVDNIFPPVI 439 +A ++ ++++L +R+ A V PEVTV+P+ L N L+C V +P I Sbjct: 94 LARSRASVDMLCRRNYYLGAPFTVGRRVQPEVTVYPEKTPALQHRNLLLCLVTGFYPGDI 153 Query: 440 NITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKH 619 +TW +NG EG T + D +F L P + Y C V+H L P+ Sbjct: 154 KVTWFRNGQEQREGIMSTGLIRNGDWTFQMTVMLAMTPELGEVYTCLVDHPSLLSPVSVE 213 Query: 620 WEPE 631 W + Sbjct: 214 WRAQ 217 >ref|NP_001029840.2| MHC class II antigen [Bos taurus] Length = 261 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/103 (29%), Positives = 45/103 (43%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P VT+ P L N L+C V + +P I + W +N T G T + D +F Sbjct: 129 PTVTISPSRTEALNHHNLLVCSVTDFYPSQIKVRWFRNDREETAGVVSTPLIRNGDWTFQ 188 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 655 + L P D Y C VEH L P++ W + + S++ Sbjct: 189 ILVMLEMTPQRGDVYTCHVEHPSLQSPIMVEWRAQSESAQSKM 231 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,084,034 Number of Sequences: 33508 Number of extensions: 899144 Number of successful extensions: 2542 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2530 length of database: 16,112,626 effective HSP length: 103 effective length of database: 12,661,302 effective search space used: 3481858050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-015082 (1138 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_949974.1| PREDICTED: similar to HLA class II histocompati... 278 1e-95 Alignment gi|XP_949973.1| PREDICTED: similar to HLA class II histocompati... 278 1e-95 Alignment gi|XP_949971.1| PREDICTED: similar to HLA class II histocompati... 278 1e-95 Alignment gi|XP_945969.1| PREDICTED: similar to HLA class II histocompati... 278 1e-95 Alignment gi|NP_002113.2| major histocompatibility complex, class II, DQ ... 271 6e-92 Alignment gi|NP_064440.1| major histocompatibility complex, class II, DQ ... 266 6e-92 Alignment gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati... 258 3e-90 Alignment gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati... 258 3e-90 Alignment gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati... 258 3e-90 Alignment gi|XP_941255.1| PREDICTED: similar to HLA class II histocompati... 258 3e-90 >ref|XP_949974.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 10 [Homo sapiens] Length = 255 Score = 278 bits (711), Expect(2) = 1e-95 Identities = 137/186 (73%), Positives = 145/186 (77%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 70 QLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFLPSDD+ YDC Sbjct: 130 TLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRS G S Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGAS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 91.3 bits (225), Expect(2) = 1e-95 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGD 55 >ref|XP_949973.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 9 [Homo sapiens] Length = 255 Score = 278 bits (711), Expect(2) = 1e-95 Identities = 137/186 (73%), Positives = 145/186 (77%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 70 QLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFLPSDD+ YDC Sbjct: 130 TLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRS G S Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGAS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 91.3 bits (225), Expect(2) = 1e-95 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGD 55 >ref|XP_949971.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 8 [Homo sapiens] Length = 255 Score = 278 bits (711), Expect(2) = 1e-95 Identities = 137/186 (73%), Positives = 145/186 (77%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 70 QLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFLPSDD+ YDC Sbjct: 130 TLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRS G S Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGAS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 91.3 bits (225), Expect(2) = 1e-95 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGD 55 >ref|XP_945969.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 1 [Homo sapiens] Length = 255 Score = 278 bits (711), Expect(2) = 1e-95 Identities = 137/186 (73%), Positives = 145/186 (77%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLPLF +FR FDPQ AL NIA KHNLNI+IKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 70 QLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFLPSDD+ YDC Sbjct: 130 TLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRS G S Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGAS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 91.3 bits (225), Expect(2) = 1e-95 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGD 55 >ref|NP_002113.2| major histocompatibility complex, class II, DQ alpha 1 precursor [Homo sapiens] Length = 255 Score = 271 bits (693), Expect(2) = 6e-92 Identities = 134/184 (72%), Positives = 142/184 (77%) Frame = +2 Query: 224 PLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTL 403 P FSKF FDPQGALRN+A AKHNLNI+IKR N+TAA N+VPEVTVF KSPV LGQPNTL Sbjct: 72 PEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTL 131 Query: 404 ICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKV 583 IC VDNIFPPV+NITWL NG SVTEG SETSFLSK+DHSF KISYLTFLPS D+ YDCKV Sbjct: 132 ICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKV 191 Query: 584 EHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSRH 763 EHWGLD+PLLKHWEPEIPAPMSELTET LRS G SRH Sbjct: 192 EHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFIIQGLRSVGASRH 251 Query: 764 QGSL 775 QG L Sbjct: 252 QGPL 255 Score = 85.9 bits (211), Expect(2) = 6e-92 Identities = 39/55 (70%), Positives = 45/55 (81%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + L+ GALALT VMS CGGEDI ADHVAS G+N+YQ YGPSG YTHEFDG+ Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGD 55 >ref|NP_064440.1| major histocompatibility complex, class II, DQ alpha 2 [Homo sapiens] Length = 255 Score = 266 bits (681), Expect(2) = 6e-92 Identities = 130/186 (69%), Positives = 142/186 (76%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 QLP+FSKF SFDPQ ALRN+A KH L ++++SN+TAA N+VPEVTVF K PV LGQPN Sbjct: 70 QLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSKFPVTLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLTFLPS D+ YDC Sbjct: 130 TLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPEIPAPMSELTET LRS G S Sbjct: 190 KVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFIIQGLRSVGAS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGLL 255 Score = 90.5 bits (223), Expect(2) = 6e-92 Identities = 41/55 (74%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + L+ GALALTAVMS CGGEDI ADHVASYG+N YQS+GPSG YTHEFDG+ Sbjct: 1 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGD 55 >ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo sapiens] Length = 254 Score = 258 bits (660), Expect(2) = 3e-90 Identities = 131/185 (70%), Positives = 139/185 (75%) Frame = +2 Query: 221 LPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNT 400 LP+ +FR FDPQ AL NIA KHNLN LIKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 71 LPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNI 129 Query: 401 LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCK 580 LIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLT LPS ++ YDCK Sbjct: 130 LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCK 189 Query: 581 VEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSR 760 VEHWGLDKPLLKHWEPEIPAPMSELTET LRS G SR Sbjct: 190 VEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASR 249 Query: 761 HQGSL 775 HQG L Sbjct: 250 HQGPL 254 Score = 92.8 bits (229), Expect(2) = 3e-90 Identities = 42/55 (76%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGD 55 >ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo sapiens] Length = 254 Score = 258 bits (660), Expect(2) = 3e-90 Identities = 131/185 (70%), Positives = 139/185 (75%) Frame = +2 Query: 221 LPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNT 400 LP+ +FR FDPQ AL NIA KHNLN LIKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 71 LPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNI 129 Query: 401 LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCK 580 LIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLT LPS ++ YDCK Sbjct: 130 LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCK 189 Query: 581 VEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSR 760 VEHWGLDKPLLKHWEPEIPAPMSELTET LRS G SR Sbjct: 190 VEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASR 249 Query: 761 HQGSL 775 HQG L Sbjct: 250 HQGPL 254 Score = 92.8 bits (229), Expect(2) = 3e-90 Identities = 42/55 (76%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGD 55 >ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo sapiens] Length = 254 Score = 258 bits (660), Expect(2) = 3e-90 Identities = 131/185 (70%), Positives = 139/185 (75%) Frame = +2 Query: 221 LPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNT 400 LP+ +FR FDPQ AL NIA KHNLN LIKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 71 LPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNI 129 Query: 401 LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCK 580 LIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLT LPS ++ YDCK Sbjct: 130 LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCK 189 Query: 581 VEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSR 760 VEHWGLDKPLLKHWEPEIPAPMSELTET LRS G SR Sbjct: 190 VEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASR 249 Query: 761 HQGSL 775 HQG L Sbjct: 250 HQGPL 254 Score = 92.8 bits (229), Expect(2) = 3e-90 Identities = 42/55 (76%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGD 55 >ref|XP_941255.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 1 [Homo sapiens] Length = 254 Score = 258 bits (660), Expect(2) = 3e-90 Identities = 131/185 (70%), Positives = 139/185 (75%) Frame = +2 Query: 221 LPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNT 400 LP+ +FR FDPQ AL NIA KHNLN LIKRSN+TAA N+VPEVTVF KSPV LGQPN Sbjct: 71 LPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNI 129 Query: 401 LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCK 580 LIC VDNIFPPV+NITWL NGHSVTEG SETSFLSK+DHSF KISYLT LPS ++ YDCK Sbjct: 130 LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCK 189 Query: 581 VEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSR 760 VEHWGLDKPLLKHWEPEIPAPMSELTET LRS G SR Sbjct: 190 VEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASR 249 Query: 761 HQGSL 775 HQG L Sbjct: 250 HQGPL 254 Score = 92.8 bits (229), Expect(2) = 3e-90 Identities = 42/55 (76%), Positives = 47/55 (85%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDG+ Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGD 55 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,033,409 Number of Sequences: 39411 Number of extensions: 1049826 Number of successful extensions: 3039 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3004 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 3747167830 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-015082 (1138 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha... 248 5e-79 Alignment gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ... 186 3e-47 Alignment gi|NP_032232.1| histocompatibility 2, O region alpha locus [Mus... 179 6e-45 Alignment gi|NP_034516.2| histocompatibility 2, class II, locus DMa [Mus ... 72 1e-12 Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 71 2e-12 Alignment gi|NP_033865.2| beta-2-microglobulin [Mus musculus] 67 3e-11 Alignment gi|NP_034512.1| histocompatibility 2, class II antigen E beta [... 64 3e-10 Alignment gi|NP_996988.1| histocompatibility 2, class II antigen A, beta ... 64 4e-10 Alignment gi|NP_001029150.1| H-2 class II histocompatibility antigen E-a/... 64 4e-10 Alignment gi|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus ... 64 4e-10 >ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha [Mus musculus] Length = 256 Score = 248 bits (633), Expect(2) = 5e-79 Identities = 118/185 (63%), Positives = 133/185 (71%) Frame = +2 Query: 221 LPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNT 400 LP F + SFDPQG L+NIA KHNL +L KRSN+T A N+ P+ TVFPKSPV+LGQPNT Sbjct: 72 LPEFGQLASFDPQGGLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFPKSPVLLGQPNT 131 Query: 401 LICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCK 580 LIC VDNIFPPVINITWL+N SV +G ETSF D+SF K+SYLTF+PSDDD YDCK Sbjct: 132 LICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 191 Query: 581 VEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPSR 760 VEHWGL++P+LKHWEPEIPAPMSELTET LRSGG SR Sbjct: 192 VEHWGLEEPVLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTIFIIQGLRSGGTSR 251 Query: 761 HQGSL 775 H G L Sbjct: 252 HPGPL 256 Score = 66.2 bits (160), Expect(2) = 5e-79 Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGED-IAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M R L+ G LALT ++S CGGED I ADHV +YG++VYQS G G YT EFDG+ Sbjct: 1 MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGD 56 >ref|NP_034511.2| histocompatibility 2, class II antigen E alpha [Mus musculus] Length = 255 Score = 186 bits (473), Expect = 3e-47 Identities = 87/148 (58%), Positives = 107/148 (72%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +L F+KF SF+ QGAL NIA K NL+++ +RSNNT N PEVTV +SPV LG+PN Sbjct: 69 RLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPN 128 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 LIC +D PPV+N+TW +NG VTEG SET FL ++DH F K YLTFLPS DDFYDC Sbjct: 129 ILICFIDKFSPPVVNVTWFRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDC 188 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTE 661 +V+HWGL++PL KHWE E + E TE Sbjct: 189 EVDHWGLEEPLRKHWEFEEKTLLPETTE 216 >ref|NP_032232.1| histocompatibility 2, O region alpha locus [Mus musculus] Length = 250 Score = 179 bits (453), Expect = 6e-45 Identities = 83/149 (55%), Positives = 108/149 (72%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP F F D Q L +I+ K +L+IL++RSN T AV+ P VTV PK+ V LG+PN Sbjct: 70 RLPEFGDFAHSDFQSGLMSISMIKAHLDILVERSNRTRAVSVPPRVTVLPKTRVELGKPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 LIC VD+IFPPVIN+TWL+N +T+G ++TSF S+ +H F K YLTF+PS +D YDC Sbjct: 130 VLICIVDDIFPPVINVTWLRNSQPITKGVAQTSFYSQPNHRFRKFHYLTFVPSAEDVYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTET 664 KVEHWGLD PLL+HWEP++ P + TET Sbjct: 190 KVEHWGLDTPLLQHWEPQVLTPPPDTTET 218 >ref|NP_034516.2| histocompatibility 2, class II, locus DMa [Mus musculus] Length = 261 Score = 71.6 bits (174), Expect = 1e-12 Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 5/153 (3%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILI-----KRSNNTAAVNQVPEVTVFPKSPVM 382 QLP F+++ QG IA K +L+ K +P VF P+ Sbjct: 81 QLPDFAEWAQ--GQGDASAIAFDKSFCEMLMREVSPKLEGQIPVSRGLPVAEVFTLKPLE 138 Query: 383 LGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDD 562 G+PNTL+C + N+FPP + + W + V EG S TS + + +F SYL F P Sbjct: 139 FGKPNTLVCFISNLFPPTLTVNWQLHSAPV-EGASPTSISAVDGLTFQAFSYLNFTPEPF 197 Query: 563 DFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 661 D Y C V H + +W P+ P S+L E Sbjct: 198 DLYSCTVTHEIDRYTAIAYWVPQNALP-SDLLE 229 >ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus] Length = 271 Score = 70.9 bits (172), Expect = 2e-12 Identities = 35/99 (35%), Positives = 48/99 (48%) Frame = +2 Query: 326 TAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLS 505 T N PEVTV+P+ +L Q N L+C V +P I++ W +NG G T + Sbjct: 116 TVERNVPPEVTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVR 175 Query: 506 KNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHW 622 D +F L +P D Y C VEH GL +P+ W Sbjct: 176 NGDWTFQTTVMLEMIPELGDIYSCLVEHPGLLRPVSVAW 214 >ref|NP_033865.2| beta-2-microglobulin [Mus musculus] Length = 119 Score = 67.4 bits (163), Expect = 3e-11 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +2 Query: 332 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTE-GFSETSFLSK 508 A+ + P++ V+ + P G+PN L C+V PP I I LKNG + + S+ SF Sbjct: 20 AIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSF--S 77 Query: 509 NDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 634 D SF +++ F P++ D Y C+V+H + +P +W+ ++ Sbjct: 78 KDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM 119 >ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus] Length = 264 Score = 63.9 bits (154), Expect = 3e-10 Identities = 29/103 (28%), Positives = 48/103 (46%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P VTV+P L N L+C V + +P I + W +NG G T + D +F Sbjct: 124 PTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQ 183 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 655 + L +P + Y C+VEH L P+ W+ + + +++ Sbjct: 184 TLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWKAQSTSAQNKM 226 >ref|NP_996988.1| histocompatibility 2, class II antigen A, beta 1 [Mus musculus] Length = 265 Score = 63.5 bits (153), Expect = 4e-10 Identities = 30/103 (29%), Positives = 45/103 (43%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P V + L NTL+C V + +P I + W +NG T G S T + D +F Sbjct: 125 PNVVISLSRTEALNHHNTLVCSVTDFYPTQIKVRWFRNGQEETVGVSSTQLIRNGDWTFQ 184 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 655 + L P + Y C VEH L P+ W + + S++ Sbjct: 185 VLVMLEMTPRRGEVYTCHVEHPSLKSPITVEWRAQSESAWSKM 227 >ref|NP_001029150.1| H-2 class II histocompatibility antigen E-a/k beta-2 [Mus musculus] Length = 287 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/103 (28%), Positives = 47/103 (45%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P+VTV+P L N L+C V + +P I + W +NG G T + D ++ Sbjct: 125 PKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWTYQ 184 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 655 + L +P + Y C+VEH L P+ W + ++L Sbjct: 185 TLVMLEMVPRGGEVYTCQVEHPSLTSPVTVEWRARSTSAQNKL 227 >ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus] Length = 261 Score = 63.5 bits (153), Expect = 4e-10 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +2 Query: 341 QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN-DH 517 + P V V +P +P L C+V +P + ITW+KNG V ++ N D Sbjct: 113 RAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDW 172 Query: 518 SFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEP 628 ++ +SYL PS D Y C V+H G +P+ W P Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTP 209 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,919,467 Number of Sequences: 45328 Number of extensions: 1212248 Number of successful extensions: 3348 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3337 length of database: 21,768,885 effective HSP length: 105 effective length of database: 17,009,445 effective search space used: 4643578485 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-015082 (1138 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001011726.1| MHC class II DLA DQalpha chain [Canis famili... 273 5e-92 Alignment gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati... 187 5e-52 Alignment gi|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris] 189 4e-48 Alignment gi|XP_532104.2| PREDICTED: similar to HLA class II histocompati... 45 4e-12 Alignment gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca... 68 1e-11 Alignment gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami... 68 2e-11 Alignment gi|XP_861572.1| PREDICTED: similar to major histocompatibility ... 68 2e-11 Alignment gi|XP_538853.2| PREDICTED: similar to major histocompatibility ... 68 2e-11 Alignment gi|XP_535458.1| PREDICTED: similar to beta-2-microglobulin prec... 65 9e-11 Alignment gi|XP_850148.1| PREDICTED: similar to beta-2-microglobulin prec... 65 9e-11 >ref|NP_001011726.1| MHC class II DLA DQalpha chain [Canis familiaris] Length = 255 Score = 273 bits (699), Expect(2) = 5e-92 Identities = 133/186 (71%), Positives = 143/186 (76%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP+FS FRSFDPQGALRN+A K NLNI+ KRSN TAA N+VPEVTVF KSPVMLGQPN Sbjct: 70 RLPVFSTFRSFDPQGALRNLAIIKQNLNIMTKRSNQTAATNEVPEVTVFSKSPVMLGQPN 129 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 TLIC VDNIFPPVIN+TWLKN HSVTEG SETSF +K DHSF KISYLTFLPS +D YDC Sbjct: 130 TLICLVDNIFPPVINVTWLKNRHSVTEGVSETSFFAKGDHSFSKISYLTFLPSAEDIYDC 189 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTETXXXXXXXXXXXXXXXXXXXXXXXXLRSGGPS 757 KVEHWGLD+PLLKHWEPE+P PMSELTET LRSGG S Sbjct: 190 KVEHWGLDEPLLKHWEPEVPTPMSELTETVVCALGLAVGLVGIVMGTVFIIQGLRSGGTS 249 Query: 758 RHQGSL 775 RHQG L Sbjct: 250 RHQGPL 255 Score = 84.0 bits (206), Expect(2) = 5e-92 Identities = 38/55 (69%), Positives = 45/55 (81%) Frame = +3 Query: 54 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGN 218 M+ RVL+ G L LT +MS GGE+I ADHVA+YG+NVYQSYGPSG YTHEFDG+ Sbjct: 1 MILNRVLILGTLILTIMMSPSGGEEIVADHVANYGINVYQSYGPSGQYTHEFDGD 55 >ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris] Length = 227 Score = 187 bits (475), Expect(2) = 5e-52 Identities = 87/156 (55%), Positives = 110/156 (70%), Gaps = 7/156 (4%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQV-------PEVTVFPKSP 376 +LP F FDPQ L +IA K +L++L++RSN T A+N P V V PK Sbjct: 40 RLPEFGNLAHFDPQNGLASIAVIKAHLDVLVERSNRTRAINGTHLSSPLPPRVAVLPKFR 99 Query: 377 VMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPS 556 V LGQPN LIC VDNIFPPVINITWL+NG ++EG ++TSF S+ DH F K YLTF+PS Sbjct: 100 VELGQPNVLICIVDNIFPPVINITWLRNGQIISEGVAQTSFYSQPDHLFRKFCYLTFVPS 159 Query: 557 DDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 664 +D YDCKVEHWGL++PLL+HWEP++P P+ + ET Sbjct: 160 AEDMYDCKVEHWGLEEPLLRHWEPQVPIPVPDTIET 195 Score = 36.6 bits (83), Expect(2) = 5e-52 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = +3 Query: 144 VASYGLNVYQSYGPSGYYTHEFDG 215 + SYG YQSYG SG + HEFDG Sbjct: 1 MGSYGPAFYQSYGSSGQFAHEFDG 24 >ref|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris] Length = 254 Score = 189 bits (480), Expect = 4e-48 Identities = 90/148 (60%), Positives = 106/148 (71%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +L F +F SF+ QGAL NIA K NL+ +IKRSN+T N PEVTV +PV LG+PN Sbjct: 69 RLEEFGRFASFEAQGALANIAVDKANLDTMIKRSNHTPNTNVPPEVTVLSNTPVELGEPN 128 Query: 398 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDC 577 LIC +D PPVIN+TWL+NG+ VT G SET FL + DH F K YL FLPS +D YDC Sbjct: 129 ILICFIDKFSPPVINVTWLRNGNPVTTGVSETIFLPREDHLFRKFHYLPFLPSAEDVYDC 188 Query: 578 KVEHWGLDKPLLKHWEPEIPAPMSELTE 661 KVEHWGLD+PLLKHWE E P P+ E TE Sbjct: 189 KVEHWGLDEPLLKHWEFEPPTPLPETTE 216 >ref|XP_532104.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 10 [Canis familiaris] Length = 142 Score = 45.4 bits (106), Expect(2) = 4e-12 Identities = 25/64 (39%), Positives = 37/64 (57%) Frame = +2 Query: 218 QLPLFSKFRSFDPQGALRNIATAKHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPN 397 +LP F FDPQ L +IA K +L++L++RSN T A+N+ P+V + + Sbjct: 56 RLPEFGNLAHFDPQNGLASIAVIKAHLDVLVERSNRTRAINE-PQVPIPVPDTI-----E 109 Query: 398 TLIC 409 TLIC Sbjct: 110 TLIC 113 Score = 44.7 bits (104), Expect(2) = 4e-12 Identities = 19/29 (65%), Positives = 21/29 (72%) Frame = +3 Query: 129 IAADHVASYGLNVYQSYGPSGYYTHEFDG 215 I ADH+ SYG YQSYG SG + HEFDG Sbjct: 12 IEADHMGSYGPAFYQSYGSSGQFAHEFDG 40 >ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris] Length = 269 Score = 68.2 bits (165), Expect = 1e-11 Identities = 31/103 (30%), Positives = 46/103 (44%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P VT+FP +L N L+C V + +P I + W +N T G T + D +F Sbjct: 129 PTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRNDQEQTAGVVSTPLIRNGDWTFQ 188 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 655 + L P D Y C VEH L P+ W + + S++ Sbjct: 189 ILVMLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSESAQSKM 231 >ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris] Length = 266 Score = 67.8 bits (164), Expect = 2e-11 Identities = 34/123 (27%), Positives = 55/123 (44%) Frame = +2 Query: 287 KHNLNILIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGH 466 +HN ++ + T P VTV+P L N L+C V+ +P I + WL+NG Sbjct: 109 RHNYGVI---ESFTVQRRVEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQ 165 Query: 467 SVTEGFSETSFLSKNDHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPM 646 G T + D +F + L +P + Y C+VEH L P+ W + + Sbjct: 166 EEEAGVVSTGLIRNGDWTFQILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEWRAQSDSAQ 225 Query: 647 SEL 655 S++ Sbjct: 226 SKM 228 >ref|XP_861572.1| PREDICTED: similar to major histocompatibility complex, class II, DM alpha precursor isoform 2 [Canis familiaris] Length = 170 Score = 67.8 bits (164), Expect = 2e-11 Identities = 36/105 (34%), Positives = 52/105 (49%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P V VF P+ G+PN L+C + N+FPP + + W + V EG T + + SF Sbjct: 38 PMVDVFTLKPLEFGKPNMLVCFISNLFPPTLTVNWWHHLDPV-EGIGPTFVSAVDGFSFQ 96 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 661 SYL F P+ D + C V H + + +W P P S+L E Sbjct: 97 AFSYLNFTPAPSDLFSCVVTHEIDNYTAIAYWVPHDALP-SDLLE 140 >ref|XP_538853.2| PREDICTED: similar to major histocompatibility complex, class II, DM alpha precursor isoform 1 [Canis familiaris] Length = 265 Score = 67.8 bits (164), Expect = 2e-11 Identities = 36/105 (34%), Positives = 52/105 (49%) Frame = +2 Query: 347 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSFL 526 P V VF P+ G+PN L+C + N+FPP + + W + V EG T + + SF Sbjct: 133 PMVDVFTLKPLEFGKPNMLVCFISNLFPPTLTVNWWHHLDPV-EGIGPTFVSAVDGFSFQ 191 Query: 527 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 661 SYL F P+ D + C V H + + +W P P S+L E Sbjct: 192 AFSYLNFTPAPSDLFSCVVTHEIDNYTAIAYWVPHDALP-SDLLE 235 >ref|XP_535458.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris] Length = 125 Score = 65.5 bits (158), Expect = 9e-11 Identities = 32/98 (32%), Positives = 52/98 (53%) Frame = +2 Query: 332 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 511 AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84 Query: 512 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 625 D +F + + F P++ D + C+V+H L +P + W+ Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122 >ref|XP_850148.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 3 [Canis familiaris] Length = 125 Score = 65.5 bits (158), Expect = 9e-11 Identities = 32/98 (32%), Positives = 52/98 (53%) Frame = +2 Query: 332 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 511 AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84 Query: 512 DHSFLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 625 D +F + + F P++ D + C+V+H L +P + W+ Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,560,075 Number of Sequences: 33732 Number of extensions: 1052211 Number of successful extensions: 2882 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2865 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4292844465 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)