BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-017627 (631 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa] 107 3e-25 >ref|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa] Length = 277 Score = 107 bits (266), Expect = 3e-25 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,867 Number of Sequences: 1040 Number of extensions: 9440 Number of successful extensions: 38 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 38 length of database: 434,620 effective HSP length: 73 effective length of database: 358,700 effective search space used: 48783200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-017627 (631 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_878222.1| PREDICTED: similar to Neuronal membrane glycopr... 160 5e-40 Alignment gi|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform ... 160 5e-40 Alignment gi|XP_878028.1| PREDICTED: similar to Neuronal membrane glycopr... 160 5e-40 Alignment gi|XP_869276.1| PREDICTED: similar to Neuronal membrane glycopr... 160 5e-40 Alignment gi|XP_877931.1| PREDICTED: similar to Neuronal membrane glycopr... 153 1e-37 Alignment gi|XP_877839.1| PREDICTED: similar to Neuronal membrane glycopr... 148 3e-36 Alignment gi|XP_594847.2| PREDICTED: similar to Neuronal membrane glycopr... 128 4e-30 Alignment gi|NP_776574.2| proteolipid protein 1 [Bos taurus] 107 9e-24 Alignment gi|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform ... 103 1e-22 >ref|XP_878222.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 8 [Bos taurus] Length = 284 Score = 160 bits (406), Expect = 5e-40 Identities = 75/84 (89%), Positives = 81/84 (96%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 17 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 76 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 77 SEVIQLMQYVIYGIASFFFLYGII 100 >ref|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform 2 isoform 7 [Bos taurus] Length = 301 Score = 160 bits (406), Expect = 5e-40 Identities = 75/84 (89%), Positives = 81/84 (96%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140 >ref|XP_878028.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 6 [Bos taurus] Length = 314 Score = 160 bits (406), Expect = 5e-40 Identities = 75/84 (89%), Positives = 81/84 (96%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140 >ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 2 [Bos taurus] Length = 324 Score = 160 bits (406), Expect = 5e-40 Identities = 75/84 (89%), Positives = 81/84 (96%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140 >ref|XP_877931.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 5 [Bos taurus] Length = 326 Score = 153 bits (386), Expect = 1e-37 Identities = 73/86 (84%), Positives = 80/86 (93%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 Query: 489 TEV--IQLMQYLIYRHSSFFFLYWIL 560 +EV + LMQY+IY +SFFFLY I+ Sbjct: 117 SEVTKLDLMQYVIYGIASFFFLYGII 142 >ref|XP_877839.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 4 [Bos taurus] Length = 334 Score = 148 bits (374), Expect = 3e-36 Identities = 73/94 (77%), Positives = 79/94 (84%), Gaps = 10/94 (10%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 Query: 489 TEV----------IQLMQYLIYRHSSFFFLYWIL 560 + IQLMQY+IY +SFFFLY I+ Sbjct: 117 SRKCNHLGSSFHRIQLMQYVIYGIASFFFLYGII 150 >ref|XP_594847.2| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform 1 [Bos taurus] Length = 297 Score = 128 bits (321), Expect = 4e-30 Identities = 58/60 (96%), Positives = 60/60 (100%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL Sbjct: 57 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116 >ref|NP_776574.2| proteolipid protein 1 [Bos taurus] Length = 277 Score = 107 bits (266), Expect = 9e-24 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 >ref|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform 1, partial [Bos taurus] Length = 268 Score = 103 bits (256), Expect = 1e-22 Identities = 48/88 (54%), Positives = 66/88 (75%), Gaps = 5/88 (5%) Frame = +3 Query: 312 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTTD 476 CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F + +T D Sbjct: 1 CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLD 60 Query: 477 HALLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 61 VFTMVYMIDIFKYVIYGIAAAFFVYGIL 88 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,179,675 Number of Sequences: 33508 Number of extensions: 382340 Number of successful extensions: 2031 Number of sequences better than 1.0e-05: 9 Number of HSP's better than 0.0 without gapping: 1778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2024 length of database: 16,112,626 effective HSP length: 97 effective length of database: 12,862,350 effective search space used: 1440583200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-017627 (631 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens] 160 6e-40 Alignment gi|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens] 159 2e-39 Alignment gi|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens] 159 2e-39 Alignment gi|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens] 159 2e-39 Alignment gi|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens] 107 1e-23 Alignment gi|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens] 107 1e-23 Alignment gi|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens] 106 2e-23 Alignment gi|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens] 104 7e-23 Alignment gi|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens] 104 7e-23 >ref|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens] Length = 246 Score = 160 bits (406), Expect = 6e-40 Identities = 75/85 (88%), Positives = 81/85 (95%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHAL Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L+EVIQLMQY+IY +SFFFLY I+ Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGII 85 >ref|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens] Length = 265 Score = 159 bits (401), Expect = 2e-39 Identities = 74/84 (88%), Positives = 80/84 (95%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGII 104 >ref|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens] Length = 328 Score = 159 bits (401), Expect = 2e-39 Identities = 74/84 (88%), Positives = 80/84 (95%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGII 144 >ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens] Length = 305 Score = 159 bits (401), Expect = 2e-39 Identities = 74/84 (88%), Positives = 80/84 (95%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGII 144 >ref|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens] Length = 277 Score = 107 bits (266), Expect = 1e-23 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 >ref|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens] Length = 242 Score = 107 bits (266), Expect = 1e-23 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 >ref|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens] Length = 267 Score = 106 bits (264), Expect = 2e-23 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 2/87 (2%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DH 479 MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 1 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60 Query: 480 ALLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 61 LDVFTMIDIFKYVIYGIAAAFFVYGIL 87 >ref|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens] Length = 278 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 >ref|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens] Length = 278 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,673,397 Number of Sequences: 39411 Number of extensions: 456065 Number of successful extensions: 2520 Number of sequences better than 1.0e-05: 9 Number of HSP's better than 0.0 without gapping: 2183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2510 length of database: 17,774,539 effective HSP length: 97 effective length of database: 13,951,672 effective search space used: 1562587264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-017627 (631 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_075611.1| glycoprotein m6b [Mus musculus] 162 2e-40 Alignment gi|NP_035253.1| proteolipid protein 1 [Mus musculus] 107 1e-23 Alignment gi|NP_705809.1| glycoprotein m6a [Mus musculus] 104 8e-23 >ref|NP_075611.1| glycoprotein m6b [Mus musculus] Length = 269 Score = 162 bits (411), Expect = 2e-40 Identities = 76/85 (89%), Positives = 82/85 (96%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHAL Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L+EVIQLMQY+IY +SFFFLY I+ Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGII 85 >ref|NP_035253.1| proteolipid protein 1 [Mus musculus] Length = 277 Score = 107 bits (266), Expect = 1e-23 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 >ref|NP_705809.1| glycoprotein m6a [Mus musculus] Length = 278 Score = 104 bits (259), Expect = 8e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFELARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,782,382 Number of Sequences: 45328 Number of extensions: 496712 Number of successful extensions: 2761 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 2343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2747 length of database: 21,768,885 effective HSP length: 99 effective length of database: 17,281,413 effective search space used: 1900955430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-017627 (631 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ... 159 3e-39 Alignment gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ... 108 5e-24 Alignment gi|NP_001013856.1| proteolipid protein 1 [Canis familiaris] 107 1e-23 Alignment gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ... 106 2e-23 Alignment gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ... 104 7e-23 Alignment gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ... 104 7e-23 Alignment gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ... 104 7e-23 Alignment gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ... 104 7e-23 >ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis familiaris] Length = 325 Score = 159 bits (401), Expect = 3e-39 Identities = 74/84 (88%), Positives = 80/84 (95%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL Sbjct: 81 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140 Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560 +EVIQLMQY+IY +SFFFLY I+ Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGII 164 >ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis familiaris] Length = 281 Score = 108 bits (269), Expect = 5e-24 Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 5/89 (5%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTT 473 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F + +T Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 474 DHALLTEVIQLMQYLIYRHSSFFFLYWIL 560 D +L VI + +Y+IY ++ FF+Y IL Sbjct: 73 DVSLEKNVIDIFKYVIYGIAAAFFVYGIL 101 >ref|NP_001013856.1| proteolipid protein 1 [Canis familiaris] Length = 277 Score = 107 bits (266), Expect = 1e-23 Identities = 51/85 (60%), Positives = 59/85 (69%) Frame = +3 Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560 L VI QY+IY +SFFFLY L Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGAL 85 >ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis familiaris] Length = 281 Score = 106 bits (264), Expect = 2e-23 Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 5/89 (5%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTT 473 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F + +T Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 474 DHALLTEVIQLMQYLIYRHSSFFFLYWIL 560 D + VI + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTIMYVIDIFKYVIYGIAAAFFVYGIL 101 >ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis familiaris] Length = 287 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 >ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis familiaris] Length = 279 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 >ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis familiaris] Length = 277 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 >ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis familiaris] Length = 278 Score = 104 bits (259), Expect = 7e-23 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Frame = +3 Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F T D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560 + +I + +Y+IY ++ FF+Y IL Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGIL 98 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,124,666 Number of Sequences: 33732 Number of extensions: 449545 Number of successful extensions: 2494 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 2166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2473 length of database: 19,266,565 effective HSP length: 98 effective length of database: 15,960,829 effective search space used: 1771652019 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)