Animal-Genome cDNA 20060611S-017627


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-017627
         (631 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa]         107   3e-25

>ref|NP_999139.1| proteolipid protein, lipophilin [Sus scrofa]
          Length = 277

 Score =  107 bits (266), Expect = 3e-25
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,867
Number of Sequences: 1040
Number of extensions: 9440
Number of successful extensions: 38
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 434,620
effective HSP length: 73
effective length of database: 358,700
effective search space used: 48783200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-017627
         (631 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_878222.1| PREDICTED: similar to Neuronal membrane glycopr...   160   5e-40
Alignment   gi|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform ...   160   5e-40
Alignment   gi|XP_878028.1| PREDICTED: similar to Neuronal membrane glycopr...   160   5e-40
Alignment   gi|XP_869276.1| PREDICTED: similar to Neuronal membrane glycopr...   160   5e-40
Alignment   gi|XP_877931.1| PREDICTED: similar to Neuronal membrane glycopr...   153   1e-37
Alignment   gi|XP_877839.1| PREDICTED: similar to Neuronal membrane glycopr...   148   3e-36
Alignment   gi|XP_594847.2| PREDICTED: similar to Neuronal membrane glycopr...   128   4e-30
Alignment   gi|NP_776574.2| proteolipid protein 1 [Bos taurus]                   107   9e-24
Alignment   gi|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform ...   103   1e-22

>ref|XP_878222.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 8 [Bos taurus]
          Length = 284

 Score =  160 bits (406), Expect = 5e-40
 Identities = 75/84 (89%), Positives = 81/84 (96%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 17  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 76

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 77  SEVIQLMQYVIYGIASFFFLYGII 100


>ref|XP_878121.1| PREDICTED: similar to glycoprotein M6B isoform 2 isoform 7 [Bos
           taurus]
          Length = 301

 Score =  160 bits (406), Expect = 5e-40
 Identities = 75/84 (89%), Positives = 81/84 (96%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140


>ref|XP_878028.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 6 [Bos taurus]
          Length = 314

 Score =  160 bits (406), Expect = 5e-40
 Identities = 75/84 (89%), Positives = 81/84 (96%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140


>ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 2 [Bos taurus]
          Length = 324

 Score =  160 bits (406), Expect = 5e-40
 Identities = 75/84 (89%), Positives = 81/84 (96%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 117 SEVIQLMQYVIYGIASFFFLYGII 140


>ref|XP_877931.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 5 [Bos taurus]
          Length = 326

 Score =  153 bits (386), Expect = 1e-37
 Identities = 73/86 (84%), Positives = 80/86 (93%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 489 TEV--IQLMQYLIYRHSSFFFLYWIL 560
           +EV  + LMQY+IY  +SFFFLY I+
Sbjct: 117 SEVTKLDLMQYVIYGIASFFFLYGII 142


>ref|XP_877839.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 4 [Bos taurus]
          Length = 334

 Score =  148 bits (374), Expect = 3e-36
 Identities = 73/94 (77%), Positives = 79/94 (84%), Gaps = 10/94 (10%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116

Query: 489 TEV----------IQLMQYLIYRHSSFFFLYWIL 560
           +            IQLMQY+IY  +SFFFLY I+
Sbjct: 117 SRKCNHLGSSFHRIQLMQYVIYGIASFFFLYGII 150


>ref|XP_594847.2| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b)
           isoform 1 [Bos taurus]
          Length = 297

 Score =  128 bits (321), Expect = 4e-30
 Identities = 58/60 (96%), Positives = 60/60 (100%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHALL
Sbjct: 57  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 116


>ref|NP_776574.2| proteolipid protein 1 [Bos taurus]
          Length = 277

 Score =  107 bits (266), Expect = 9e-24
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


>ref|XP_583987.2| PREDICTED: similar to glycoprotein M6A isoform 1, partial [Bos
           taurus]
          Length = 268

 Score =  103 bits (256), Expect = 1e-22
 Identities = 48/88 (54%), Positives = 66/88 (75%), Gaps = 5/88 (5%)
 Frame = +3

Query: 312 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTTD 476
           CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F     + +T D
Sbjct: 1   CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLD 60

Query: 477 HALLTEVIQLMQYLIYRHSSFFFLYWIL 560
              +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 61  VFTMVYMIDIFKYVIYGIAAAFFVYGIL 88


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,179,675
Number of Sequences: 33508
Number of extensions: 382340
Number of successful extensions: 2031
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2024
length of database: 16,112,626
effective HSP length: 97
effective length of database: 12,862,350
effective search space used: 1440583200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-017627
         (631 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens]         160   6e-40
Alignment   gi|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens]            159   2e-39
Alignment   gi|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens]         159   2e-39
Alignment   gi|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens]         159   2e-39
Alignment   gi|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens]       107   1e-23
Alignment   gi|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens]       107   1e-23
Alignment   gi|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens]            106   2e-23
Alignment   gi|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens]            104   7e-23
Alignment   gi|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens]            104   7e-23

>ref|NP_001001994.1| glycoprotein M6B isoform 4 [Homo sapiens]
          Length = 246

 Score =  160 bits (406), Expect = 6e-40
 Identities = 75/85 (88%), Positives = 81/85 (95%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L+EVIQLMQY+IY  +SFFFLY I+
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGII 85


>ref|NP_005269.1| glycoprotein M6B isoform 3 [Homo sapiens]
          Length = 265

 Score =  159 bits (401), Expect = 2e-39
 Identities = 74/84 (88%), Positives = 80/84 (95%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGII 104


>ref|NP_001001995.1| glycoprotein M6B isoform 1 [Homo sapiens]
          Length = 328

 Score =  159 bits (401), Expect = 2e-39
 Identities = 74/84 (88%), Positives = 80/84 (95%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGII 144


>ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens]
          Length = 305

 Score =  159 bits (401), Expect = 2e-39
 Identities = 74/84 (88%), Positives = 80/84 (95%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGII 144


>ref|NP_000524.3| proteolipid protein 1 isoform 1 [Homo sapiens]
          Length = 277

 Score =  107 bits (266), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


>ref|NP_955772.1| proteolipid protein 1 isoform 2 [Homo sapiens]
          Length = 242

 Score =  107 bits (266), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


>ref|NP_963886.1| glycoprotein M6A isoform 3 [Homo sapiens]
          Length = 267

 Score =  106 bits (264), Expect = 2e-23
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DH 479
           MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D 
Sbjct: 1   MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60

Query: 480 ALLTEVIQLMQYLIYRHSSFFFLYWIL 560
             +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 61  LDVFTMIDIFKYVIYGIAAAFFVYGIL 87


>ref|NP_963885.1| glycoprotein M6A isoform 2 [Homo sapiens]
          Length = 278

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


>ref|NP_005268.1| glycoprotein M6A isoform 1 [Homo sapiens]
          Length = 278

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,673,397
Number of Sequences: 39411
Number of extensions: 456065
Number of successful extensions: 2520
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 2183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2510
length of database: 17,774,539
effective HSP length: 97
effective length of database: 13,951,672
effective search space used: 1562587264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-017627
         (631 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075611.1| glycoprotein m6b [Mus musculus]                      162   2e-40
Alignment   gi|NP_035253.1| proteolipid protein 1 [Mus musculus]                 107   1e-23
Alignment   gi|NP_705809.1| glycoprotein m6a [Mus musculus]                      104   8e-23

>ref|NP_075611.1| glycoprotein m6b [Mus musculus]
          Length = 269

 Score =  162 bits (411), Expect = 2e-40
 Identities = 76/85 (89%), Positives = 82/85 (96%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTNT+DHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L+EVIQLMQY+IY  +SFFFLY I+
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGII 85


>ref|NP_035253.1| proteolipid protein 1 [Mus musculus]
          Length = 277

 Score =  107 bits (266), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


>ref|NP_705809.1| glycoprotein m6a [Mus musculus]
          Length = 278

 Score =  104 bits (259), Expect = 8e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFELARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,782,382
Number of Sequences: 45328
Number of extensions: 496712
Number of successful extensions: 2761
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2747
length of database: 21,768,885
effective HSP length: 99
effective length of database: 17,281,413
effective search space used: 1900955430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-017627
         (631 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ...   159   3e-39
Alignment   gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ...   108   5e-24
Alignment   gi|NP_001013856.1| proteolipid protein 1 [Canis familiaris]          107   1e-23
Alignment   gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ...   106   2e-23
Alignment   gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ...   104   7e-23
Alignment   gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ...   104   7e-23
Alignment   gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ...   104   7e-23
Alignment   gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ...   104   7e-23

>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis familiaris]
          Length = 325

 Score =  159 bits (401), Expect = 3e-39
 Identities = 74/84 (88%), Positives = 80/84 (95%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHALL 488
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGT+AILEQHFSTN +DHALL
Sbjct: 81  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140

Query: 489 TEVIQLMQYLIYRHSSFFFLYWIL 560
           +EVIQLMQY+IY  +SFFFLY I+
Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGII 164


>ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis
           familiaris]
          Length = 281

 Score =  108 bits (269), Expect = 5e-24
 Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTT 473
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F     + +T 
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 474 DHALLTEVIQLMQYLIYRHSSFFFLYWIL 560
           D +L   VI + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVSLEKNVIDIFKYVIYGIAAAFFVYGIL 101


>ref|NP_001013856.1| proteolipid protein 1 [Canis familiaris]
          Length = 277

 Score =  107 bits (266), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +3

Query: 306 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTTDHAL 485
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 486 LTEVIQLMQYLIYRHSSFFFLYWIL 560
           L  VI   QY+IY  +SFFFLY  L
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGAL 85


>ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis
           familiaris]
          Length = 281

 Score =  106 bits (264), Expect = 2e-23
 Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 5/89 (5%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHF-----STNTT 473
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F     + +T 
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 474 DHALLTEVIQLMQYLIYRHSSFFFLYWIL 560
           D   +  VI + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTIMYVIDIFKYVIYGIAAAFFVYGIL 101


>ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis
           familiaris]
          Length = 287

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


>ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis
           familiaris]
          Length = 279

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
           familiaris]
          Length = 277

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


>ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis
           familiaris]
          Length = 278

 Score =  104 bits (259), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 309 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTLAILEQHFSTNTT--DHA 482
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GT+ IL+ +F    T  D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 483 LLTEVIQLMQYLIYRHSSFFFLYWIL 560
            +  +I + +Y+IY  ++ FF+Y IL
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGIL 98


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,124,666
Number of Sequences: 33732
Number of extensions: 449545
Number of successful extensions: 2494
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 2166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 19,266,565
effective HSP length: 98
effective length of database: 15,960,829
effective search space used: 1771652019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)