BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-019563
(1173 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin 4 [Sus scrofa] 96 2e-21
Alignment gi|NP_001001632.1| tropomyosin 3 [Sus scrofa] 84 5e-18
>ref|NP_999500.1| tropomyosin 4 [Sus scrofa]
Length = 248
Score = 95.5 bits (236), Expect = 2e-21
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001001632.1| tropomyosin 3 [Sus scrofa]
Length = 248
Score = 84.3 bits (207), Expect = 5e-18
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,485
Number of Sequences: 1040
Number of extensions: 14119
Number of successful extensions: 37
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 109615060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-019563
(1173 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_876860.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_876756.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_589950.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 82 6e-16
Alignment gi|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 69 7e-12
Alignment gi|XP_876479.1| PREDICTED: similar to Tropomyosin alpha 4 chain... 68 2e-11
Alignment gi|XP_613213.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 63 4e-10
Alignment gi|XP_877149.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 57 2e-08
>ref|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 8 [Bos
taurus]
Length = 248
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 7 [Bos
taurus]
Length = 188
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 4 [Bos
taurus]
Length = 160
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_876860.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 3 [Bos
taurus]
Length = 232
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_876756.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Bos
taurus]
Length = 135
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_589950.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 1 [Bos
taurus]
Length = 248
Score = 82.4 bits (202), Expect = 6e-16
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Bos
taurus]
Length = 248
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATALQKLEEAEKA 83
>ref|XP_876479.1| PREDICTED: similar to Tropomyosin alpha 4 chain (Tropomyosin 4)
(TM-4), partial [Bos taurus]
Length = 44
Score = 67.8 bits (164), Expect = 2e-11
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDG 210
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDG 37
>ref|XP_613213.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 1 [Bos
taurus]
Length = 223
Score = 63.2 bits (152), Expect = 4e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +1
Query: 127 VKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAHER 306
+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +E+L+ A ER
Sbjct: 1 MKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQER 60
Query: 307 LATRLPIFKDERPA 348
LAT L ++ A
Sbjct: 61 LATALQKLEEAEKA 74
>ref|XP_877149.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 6 [Bos
taurus]
Length = 225
Score = 57.4 bits (137), Expect = 2e-08
Identities = 36/83 (43%), Positives = 46/83 (55%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE L +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQRE-----------------------LVE 37
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 38 EELDRAQERLATALQKLEEAEKA 60
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,574,543
Number of Sequences: 33508
Number of extensions: 516802
Number of successful extensions: 1498
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3633793674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-019563
(1173 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin 4 [Homo sapiens] 96 8e-20
Alignment gi|NP_705935.1| tropomyosin 3 isoform 2 [Homo sapiens] 84 2e-16
Alignment gi|NP_001018008.1| tropomyosin 1 alpha chain isoform 6 [Homo sa... 77 4e-14
Alignment gi|XP_935213.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 57 4e-08
Alignment gi|XP_947726.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 57 4e-08
>ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 95.5 bits (236), Expect = 8e-20
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_705935.1| tropomyosin 3 isoform 2 [Homo sapiens]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001018008.1| tropomyosin 1 alpha chain isoform 6 [Homo sapiens]
Length = 245
Score = 76.6 bits (187), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_935213.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 1 [Homo
sapiens]
Length = 183
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G R +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERMELQEIQ------LREAKHIA 54
Query: 280 EDLDLAHERLATRLPIFKDE 339
E+ D +E +A +L I + +
Sbjct: 55 EEADRKYEEVARKLVIIEGD 74
>ref|XP_947726.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 1 [Homo
sapiens]
Length = 183
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G R +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERMELQEIQ------LREAKHIA 54
Query: 280 EDLDLAHERLATRLPIFKDE 339
E+ D +E +A +L I + +
Sbjct: 55 EEADRKYEEVARKLVIIEGD 74
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,667,343
Number of Sequences: 39411
Number of extensions: 579190
Number of successful extensions: 1787
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3911277370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-019563
(1173 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin 4 [Mus musculus] 91 2e-18
>ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 90.9 bits (224), Expect = 2e-18
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQAD+AEDRA GL RELDG A L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A E+LAT L ++ A
Sbjct: 61 EELDRAQEQLATALQNLEEAEKA 83
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,951,024
Number of Sequences: 45328
Number of extensions: 706235
Number of successful extensions: 2216
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 2097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2211
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4847691825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-019563
(1173 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 84 2e-16
Alignment gi|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 2e-16
>ref|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 6 [Canis
familiaris]
Length = 160
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 5 [Canis
familiaris]
Length = 232
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis
familiaris]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis
familiaris]
Length = 243
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 22 [Canis
familiaris]
Length = 224
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 18 [Canis
familiaris]
Length = 227
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris]
Length = 248
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,390,399
Number of Sequences: 33732
Number of extensions: 609521
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4481540925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)