BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022570
(748 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin 4 [Sus scrofa] 78 2e-16
Alignment gi|NP_001001632.1| tropomyosin 3 [Sus scrofa] 70 4e-14
>ref|NP_999500.1| tropomyosin 4 [Sus scrofa]
Length = 248
Score = 78.2 bits (191), Expect = 2e-16
Identities = 47/118 (39%), Positives = 64/118 (54%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
QERLATALQKL M +E EEK+ A EA+R
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 124
Score = 58.2 bits (139), Expect = 2e-10
Identities = 30/110 (27%), Positives = 64/110 (58%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 115
Score = 52.4 bits (124), Expect = 1e-08
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>ref|NP_001001632.1| tropomyosin 3 [Sus scrofa]
Length = 248
Score = 70.5 bits (171), Expect = 4e-14
Identities = 43/115 (37%), Positives = 61/115 (53%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E ++ AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 59.7 bits (143), Expect = 7e-11
Identities = 31/109 (28%), Positives = 65/109 (59%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD+
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 115
Score = 48.1 bits (113), Expect = 2e-07
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,823
Number of Sequences: 1040
Number of extensions: 12145
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 434,620
effective HSP length: 74
effective length of database: 357,660
effective search space used: 62232840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022570
(748 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isof... 211 6e-55
Alignment gi|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 190 9e-49
Alignment gi|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus] 186 1e-47
Alignment gi|NP_001011674.1| tropomyosin 3 [Bos taurus] 183 1e-46
Alignment gi|NP_001010995.2| tropomyosin 2 [Bos taurus] 183 1e-46
Alignment gi|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [... 108 4e-24
Alignment gi|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 69 4e-12
Alignment gi|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 69 4e-12
Alignment gi|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 69 4e-12
Alignment gi|XP_876756.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 69 4e-12
>ref|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Bos taurus]
Length = 284
Score = 211 bits (536), Expect = 6e-55
Identities = 117/160 (73%), Positives = 123/160 (76%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK TEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 52.4 bits (124), Expect = 4e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 163 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 215
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 216 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 3 [Bos
taurus]
Length = 326
Score = 190 bits (483), Expect = 9e-49
Identities = 117/202 (57%), Positives = 123/202 (60%), Gaps = 42/202 (20%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV--------------------- 183
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVTENMCAEEGLSVAANKRREGG 60
Query: 184 ---------------------EEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKA 300
EEELTHLQKKLK TEDELDKY +NLKDAQEKLEL++KKA
Sbjct: 61 LDPSHSSLPDLGGSSKAAARVEEELTHLQKKLKETEDELDKYSENLKDAQEKLELTEKKA 120
Query: 301 SDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KE 480
SDAEGDVAALNRRIQLVEEELDRAQERLATALQKL M +E E
Sbjct: 121 SDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDE 180
Query: 481 EKIGXXXXXXXXXXXXAMEANR 546
EK+ A EA+R
Sbjct: 181 EKMEIQEMQLKEAKHIAEEADR 202
Score = 52.4 bits (124), Expect = 4e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 205 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 257
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 258 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 307
>ref|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus]
Length = 284
Score = 186 bits (473), Expect = 1e-47
Identities = 102/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 51.6 bits (122), Expect = 6e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_001011674.1| tropomyosin 3 [Bos taurus]
Length = 284
Score = 183 bits (465), Expect = 1e-46
Identities = 101/160 (63%), Positives = 118/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
>ref|NP_001010995.2| tropomyosin 2 [Bos taurus]
Length = 284
Score = 183 bits (465), Expect = 1e-46
Identities = 97/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 52.0 bits (123), Expect = 5e-07
Identities = 30/98 (30%), Positives = 57/98 (58%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [Bos taurus]
Length = 242
Score = 108 bits (270), Expect = 4e-24
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ E ++ L ++++ E+ELD+
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQAEGDVAALNRRIQLVEEELDRA 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 61 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 109
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 121 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 180
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 181 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 223
>ref|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 8 [Bos
taurus]
Length = 248
Score = 68.9 bits (167), Expect = 4e-12
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
>ref|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 7 [Bos
taurus]
Length = 188
Score = 68.9 bits (167), Expect = 4e-12
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
>ref|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 4 [Bos
taurus]
Length = 160
Score = 68.9 bits (167), Expect = 4e-12
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
>ref|XP_876756.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Bos
taurus]
Length = 135
Score = 68.9 bits (167), Expect = 4e-12
Identities = 43/115 (37%), Positives = 60/115 (52%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D + + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/111 (27%), Positives = 66/111 (59%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELD 64
Query: 241 KYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ + L A +KLE ++K A ++E + + + EE+++ + +L A
Sbjct: 65 RAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEA 115
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,994,440
Number of Sequences: 33508
Number of extensions: 477041
Number of successful extensions: 3933
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3768
length of database: 16,112,626
effective HSP length: 99
effective length of database: 12,795,334
effective search space used: 1906504766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022570
(748 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sa... 189 3e-48
Alignment gi|NP_000357.3| tropomyosin 1 alpha chain isoform 5 [Homo sapiens] 189 3e-48
Alignment gi|NP_001018006.1| tropomyosin 1 alpha chain isoform 4 [Homo sa... 189 3e-48
Alignment gi|NP_001018005.1| tropomyosin 1 alpha chain isoform 1 [Homo sa... 189 3e-48
Alignment gi|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens] 182 3e-46
Alignment gi|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo sapiens] 182 3e-46
Alignment gi|NP_001018020.1| tropomyosin 1 alpha chain isoform 7 [Homo sa... 149 2e-36
Alignment gi|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sa... 149 2e-36
Alignment gi|NP_689476.1| tropomyosin 3 isoform 1 [Homo sapiens] 113 2e-25
Alignment gi|NP_003281.1| tropomyosin 4 [Homo sapiens] 78 7e-15
>ref|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_000357.3| tropomyosin 1 alpha chain isoform 5 [Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
>ref|NP_001018006.1| tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 49.3 bits (116), Expect = 3e-06
Identities = 30/112 (26%), Positives = 59/112 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|NP_001018005.1| tropomyosin 1 alpha chain isoform 1 [Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/105 (27%), Positives = 54/105 (51%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 384
Q +E++++ K +AE R + +E+ +D ++ L
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_001018020.1| tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 149 bits (377), Expect = 2e-36
Identities = 83/160 (51%), Positives = 107/160 (66%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 49.3 bits (116), Expect = 3e-06
Identities = 30/112 (26%), Positives = 59/112 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 149 bits (377), Expect = 2e-36
Identities = 83/160 (51%), Positives = 107/160 (66%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_689476.1| tropomyosin 3 isoform 1 [Homo sapiens]
Length = 243
Score = 113 bits (282), Expect = 2e-25
Identities = 59/109 (54%), Positives = 81/109 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELD+
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 110
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 219
>ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 78.2 bits (191), Expect = 7e-15
Identities = 47/118 (39%), Positives = 64/118 (54%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
QERLATALQKL M +E EEK+ A EA+R
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 124
Score = 58.2 bits (139), Expect = 7e-09
Identities = 30/110 (27%), Positives = 64/110 (58%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 115
Score = 52.4 bits (124), Expect = 4e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,668,100
Number of Sequences: 39411
Number of extensions: 555509
Number of successful extensions: 4775
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4431
length of database: 17,774,539
effective HSP length: 99
effective length of database: 13,872,850
effective search space used: 2067054650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022570
(748 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 214 9e-56
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 214 9e-56
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 189 3e-48
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 189 3e-48
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 189 3e-48
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris]
Length = 284
Score = 214 bits (544), Expect = 9e-56
Identities = 118/160 (73%), Positives = 124/160 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 49.3 bits (116), Expect = 4e-06
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 163 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 215
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
++ DKY + +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 216 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEDEL 260
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris]
Length = 284
Score = 214 bits (544), Expect = 9e-56
Identities = 118/160 (73%), Positives = 124/160 (77%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+NLKDAQEKLEL++KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 160
Score = 52.4 bits (124), Expect = 4e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 228
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 163 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 215
Query: 229 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 216 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 265
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 53.1 bits (126), Expect = 3e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
25 [Canis familiaris]
Length = 218
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
>ref|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1
[Canis familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
24 [Canis familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 56.2 bits (134), Expect = 3e-08
Identities = 32/111 (28%), Positives = 60/111 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSES-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
10 [Canis familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 52.0 bits (123), Expect = 6e-07
Identities = 32/112 (28%), Positives = 60/112 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES + EE+ + +++ L L + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 405
+ +K +KL+ ++ +A AE V L + I +EE++ A+E + Q L
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQML 274
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 53.1 bits (126), Expect = 3e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris]
Length = 281
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +ES KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSES-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +++L L++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQ 266
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,559,970
Number of Sequences: 33732
Number of extensions: 564928
Number of successful extensions: 6596
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5901
length of database: 19,266,565
effective HSP length: 100
effective length of database: 15,893,365
effective search space used: 2352218020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022570
(748 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 189 3e-48
Alignment gi|NP_033442.2| tropomyosin 2, beta [Mus musculus] 183 1e-46
Alignment gi|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 182 4e-46
Alignment gi|NP_001001491.1| tropomyosin 4 [Mus musculus] 70 3e-12
>ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 189 bits (479), Expect = 3e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/111 (27%), Positives = 59/111 (53%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 183 bits (465), Expect = 1e-46
Identities = 97/141 (68%), Positives = 113/141 (80%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKI 489
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + E + +RAE AES KC +EEEL + LK E + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAES-------KCGDLEEELKIVTNNLKSLEAQADKYS 215
Query: 250 -------QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 363
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 216 TKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 182 bits (461), Expect = 4e-46
Identities = 100/160 (62%), Positives = 117/160 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 426
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 546
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 378
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 265
>ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 69.7 bits (169), Expect = 3e-12
Identities = 39/99 (39%), Positives = 56/99 (56%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D + Q +L+ +++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKI 489
QE+LATALQ L M +E EEK+
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKM 105
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/110 (26%), Positives = 63/110 (57%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 243
++EA+K+K+Q L+ ++A DRA+ + + E+ ++ E + L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDR 65
Query: 244 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 393
+ L A + LE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEA 115
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/111 (27%), Positives = 58/111 (52%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 249
E + +K+ +L+ + + A +RAE +E KC +EEEL ++ LK E +KY
Sbjct: 127 EEVARKLVILEGELKRAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 250 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 402
+ +E+++L K +AE R + +E+ +D +E+LA A ++
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEE 230
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,808,294
Number of Sequences: 45328
Number of extensions: 640925
Number of successful extensions: 7138
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5673
length of database: 21,768,885
effective HSP length: 101
effective length of database: 17,190,757
effective search space used: 2527041279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)