BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022886
(751 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 670,508
Number of Sequences: 1040
Number of extensions: 17815
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 434,620
effective HSP length: 74
effective length of database: 357,660
effective search space used: 62590500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022886
(751 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_871451.1| PREDICTED: similar to actin-binding LIM protein... 109 2e-24
Alignment gi|XP_883296.1| PREDICTED: similar to actin-binding LIM protein... 109 2e-24
Alignment gi|XP_600034.2| PREDICTED: similar to Actin-binding LIM protein... 64 2e-10
>ref|XP_871451.1| PREDICTED: similar to actin-binding LIM protein 1 isoform 2 [Bos
taurus]
Length = 847
Score = 109 bits (273), Expect = 2e-24
Identities = 51/72 (70%), Positives = 55/72 (76%), Gaps = 5/72 (6%)
Frame = +2
Query: 545 DNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GR 709
D +AHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQTKHFHI CFTCK C GC G
Sbjct: 79 DPLLAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCFTCKVC-GCDLAQGGF 137
Query: 710 DIQNAQALLALE 745
I+N + L L+
Sbjct: 138 FIKNGEYLCTLD 149
Score = 47.8 bits (112), Expect = 9e-06
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 39/86 (45%)
Frame = +2
Query: 605 CHKCGEPCKGEVLRVQTKHFHIXCFTCK-------------------------------- 688
CH CGE +GEV+ K +H CF C
Sbjct: 158 CHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSP 217
Query: 689 -------DCAGCGRDIQNAQALLALE 745
+CAGCGRDI+N QALLALE
Sbjct: 218 KEASCSGNCAGCGRDIKNGQALLALE 243
>ref|XP_883296.1| PREDICTED: similar to actin-binding LIM protein 1 isoform a isoform
3 [Bos taurus]
Length = 780
Score = 109 bits (273), Expect = 2e-24
Identities = 51/72 (70%), Positives = 55/72 (76%), Gaps = 5/72 (6%)
Frame = +2
Query: 545 DNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GR 709
D +AHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQTKHFHI CFTCK C GC G
Sbjct: 79 DPLLAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCFTCKVC-GCDLAQGGF 137
Query: 710 DIQNAQALLALE 745
I+N + L L+
Sbjct: 138 FIKNGEYLCTLD 149
Score = 47.8 bits (112), Expect = 9e-06
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 39/86 (45%)
Frame = +2
Query: 605 CHKCGEPCKGEVLRVQTKHFHIXCFTCK-------------------------------- 688
CH CGE +GEV+ K +H CF C
Sbjct: 158 CHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSP 217
Query: 689 -------DCAGCGRDIQNAQALLALE 745
+CAGCGRDI+N QALLALE
Sbjct: 218 KEASCSGNCAGCGRDIKNGQALLALE 243
>ref|XP_600034.2| PREDICTED: similar to Actin-binding LIM protein 3 (Actin-binding
LIM protein family member 3) (abLIM3) [Bos taurus]
Length = 173
Score = 63.5 bits (153), Expect = 2e-10
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 545 DNQVAHPQDPHHPP-EKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGCG 706
+ + + Q+P+ P VI C++CG+ CKGEV+RV HFHI CFTC+ C GCG
Sbjct: 2 NTSLPYQQNPYSPRGSSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVC-GCG 55
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,082,968
Number of Sequences: 33508
Number of extensions: 694634
Number of successful extensions: 3258
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3244
length of database: 16,112,626
effective HSP length: 99
effective length of database: 12,795,334
effective search space used: 1919300100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022886
(751 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo ... 123 1e-28
Alignment gi|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo ... 123 1e-28
Alignment gi|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sap... 110 1e-24
Alignment gi|NP_055760.1| actin binding LIM protein family, member 3 [Hom... 65 6e-11
Alignment gi|NP_115808.2| actin binding LIM protein family, member 2 [Hom... 59 3e-09
>ref|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 123 bits (309), Expect = 1e-28
Identities = 59/87 (67%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
Frame = +2
Query: 500 TWEPAELMDTHHIPKDNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCF 679
T E EL D HH D +VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQTKHFHI CF
Sbjct: 4 TLEMTELTDPHHTMGDYKVAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCF 63
Query: 680 TCKDCAGC-----GRDIQNAQALLALE 745
TCK C GC G I+N + L L+
Sbjct: 64 TCKVC-GCDLAQGGFFIKNGEYLCTLD 89
>ref|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 123 bits (309), Expect = 1e-28
Identities = 59/87 (67%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
Frame = +2
Query: 500 TWEPAELMDTHHIPKDNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCF 679
T E EL D HH D +VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQTKHFHI CF
Sbjct: 4 TLEMTELTDPHHTMGDYKVAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCF 63
Query: 680 TCKDCAGC-----GRDIQNAQALLALE 745
TCK C GC G I+N + L L+
Sbjct: 64 TCKVC-GCDLAQGGFFIKNGEYLCTLD 89
>ref|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 110 bits (275), Expect = 1e-24
Identities = 52/72 (72%), Positives = 55/72 (76%), Gaps = 5/72 (6%)
Frame = +2
Query: 545 DNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GR 709
D VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQTKHFHI CFTCK C GC G
Sbjct: 79 DPFVAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCFTCKVC-GCDLAQGGF 137
Query: 710 DIQNAQALLALE 745
I+N + L L+
Sbjct: 138 FIKNGEYLCTLD 149
>ref|NP_055760.1| actin binding LIM protein family, member 3 [Homo sapiens]
Length = 683
Score = 65.1 bits (157), Expect = 6e-11
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 545 DNQVAHPQDPHHPP-EKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGCG 706
+ + + Q+P++P VI C++CG+ CKGEV+RV HFHI CFTC+ C GCG
Sbjct: 2 NTSIPYQQNPYNPRGSSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVC-GCG 55
>ref|NP_115808.2| actin binding LIM protein family, member 2 [Homo sapiens]
Length = 530
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/53 (56%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +2
Query: 554 VAHPQDPHHPPEKP---VIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC 703
V+ PQ P EK I C+ CG CKGEVLRVQ K+FHI CF CK C GC
Sbjct: 4 VSQPQAAPSPLEKSPSTAILCNTCGNVCKGEVLRVQDKYFHIKCFVCKAC-GC 55
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,550,102
Number of Sequences: 39411
Number of extensions: 815342
Number of successful extensions: 3980
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3961
length of database: 17,774,539
effective HSP length: 99
effective length of database: 13,872,850
effective search space used: 2080927500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022886
(751 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535022.2| PREDICTED: similar to actin-binding LIM protein... 108 4e-24
Alignment gi|XP_864927.1| PREDICTED: similar to actin-binding LIM protein... 108 4e-24
Alignment gi|XP_864887.1| PREDICTED: similar to actin-binding LIM protein... 108 4e-24
Alignment gi|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein... 67 2e-11
Alignment gi|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein... 65 7e-11
>ref|XP_535022.2| PREDICTED: similar to actin-binding LIM protein 1 isoform 2 [Canis
familiaris]
Length = 846
Score = 108 bits (271), Expect = 4e-24
Identities = 50/69 (72%), Positives = 54/69 (78%), Gaps = 5/69 (7%)
Frame = +2
Query: 554 VAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GRDIQ 718
VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQT+HFHI CFTCK C GC G I+
Sbjct: 82 VAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTRHFHIKCFTCKVC-GCDLAQGGFFIK 140
Query: 719 NAQALLALE 745
N + L L+
Sbjct: 141 NGEYLCTLD 149
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 39/86 (45%)
Frame = +2
Query: 605 CHKCGEPCKGEVLRVQTKHFHIXCFTC--------------------------------- 685
CH CGE +GEV+ K +H CF C
Sbjct: 158 CHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSP 217
Query: 686 ------KDCAGCGRDIQNAQALLALE 745
+CAGCGRDI+N QALLALE
Sbjct: 218 KEASCSSNCAGCGRDIKNGQALLALE 243
>ref|XP_864927.1| PREDICTED: similar to actin-binding LIM protein 1 isoform 5 [Canis
familiaris]
Length = 862
Score = 108 bits (271), Expect = 4e-24
Identities = 50/69 (72%), Positives = 54/69 (78%), Gaps = 5/69 (7%)
Frame = +2
Query: 554 VAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GRDIQ 718
VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQT+HFHI CFTCK C GC G I+
Sbjct: 82 VAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTRHFHIKCFTCKVC-GCDLAQGGFFIK 140
Query: 719 NAQALLALE 745
N + L L+
Sbjct: 141 NGEYLCTLD 149
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 39/86 (45%)
Frame = +2
Query: 605 CHKCGEPCKGEVLRVQTKHFHIXCFTC--------------------------------- 685
CH CGE +GEV+ K +H CF C
Sbjct: 158 CHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSP 217
Query: 686 ------KDCAGCGRDIQNAQALLALE 745
+CAGCGRDI+N QALLALE
Sbjct: 218 KEASCSSNCAGCGRDIKNGQALLALE 243
>ref|XP_864887.1| PREDICTED: similar to actin-binding LIM protein 1 isoform a isoform
3 [Canis familiaris]
Length = 778
Score = 108 bits (271), Expect = 4e-24
Identities = 50/69 (72%), Positives = 54/69 (78%), Gaps = 5/69 (7%)
Frame = +2
Query: 554 VAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GRDIQ 718
VAHPQDPHHP EKPVIHCHKCGEPCKGEVLRVQT+HFHI CFTCK C GC G I+
Sbjct: 82 VAHPQDPHHPSEKPVIHCHKCGEPCKGEVLRVQTRHFHIKCFTCKVC-GCDLAQGGFFIK 140
Query: 719 NAQALLALE 745
N + L L+
Sbjct: 141 NGEYLCTLD 149
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 39/86 (45%)
Frame = +2
Query: 605 CHKCGEPCKGEVLRVQTKHFHIXCFTC--------------------------------- 685
CH CGE +GEV+ K +H CF C
Sbjct: 158 CHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSP 217
Query: 686 ------KDCAGCGRDIQNAQALLALE 745
+CAGCGRDI+N QALLALE
Sbjct: 218 KEASCSSNCAGCGRDIKNGQALLALE 243
>ref|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein 2 (Actin-binding
LIM protein family member 2) (abLIM2) [Canis familiaris]
Length = 858
Score = 66.6 bits (161), Expect = 2e-11
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Frame = +2
Query: 554 VAHPQDPHHPPEKP---VIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC 703
V+ PQ H P EKP I C+ CG CKGEVLRVQ K+FHI CF CK C GC
Sbjct: 217 VSEPQAAHSPLEKPPSTAILCNTCGNVCKGEVLRVQNKYFHIKCFVCKAC-GC 268
>ref|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein 3 (Actin-binding
LIM protein family member 3) (abLIM3) [Canis familiaris]
Length = 688
Score = 65.1 bits (157), Expect = 7e-11
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +2
Query: 554 VAHPQDPHHPP-EKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGCG 706
V + Q+P++P VI C++CG+ CKGEV+RV HFHI CFTC+ C GCG
Sbjct: 10 VPYQQNPYNPRGSSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVC-GCG 60
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,353,514
Number of Sequences: 33732
Number of extensions: 806490
Number of successful extensions: 3722
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3713
length of database: 19,266,565
effective HSP length: 100
effective length of database: 15,893,365
effective search space used: 2368111385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-022886
(751 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848803.2| actin-binding LIM protein 1 [Mus musculus] 107 1e-23
Alignment gi|NP_808346.3| actin-binding LIM protein 2 [Mus musculus] 66 3e-11
Alignment gi|NP_941051.2| actin binding LIM protein family, member 3 [Mus... 63 3e-10
>ref|NP_848803.2| actin-binding LIM protein 1 [Mus musculus]
Length = 861
Score = 107 bits (268), Expect = 1e-23
Identities = 51/72 (70%), Positives = 53/72 (73%), Gaps = 5/72 (6%)
Frame = +2
Query: 545 DNQVAHPQDPHHPPEKPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC-----GR 709
D VAHPQDPHH EKPVIHCHKCGEPCKGEVLRVQTKHFHI CFTCK C GC G
Sbjct: 79 DPSVAHPQDPHHSSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCFTCKVC-GCDLAQGGF 137
Query: 710 DIQNAQALLALE 745
I+N L L+
Sbjct: 138 FIKNGDYLCTLD 149
>ref|NP_808346.3| actin-binding LIM protein 2 [Mus musculus]
Length = 612
Score = 66.2 bits (160), Expect = 3e-11
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Frame = +2
Query: 554 VAHPQDPHHPPEKPV---IHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGC 703
V+ PQ H P EKP I C+ CG CKGEVLRVQ K+FHI CF CK C GC
Sbjct: 4 VSQPQAAHAPLEKPASTAILCNTCGNVCKGEVLRVQNKYFHIRCFVCKAC-GC 55
>ref|NP_941051.2| actin binding LIM protein family, member 3 [Mus musculus]
Length = 682
Score = 63.2 bits (152), Expect = 3e-10
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 545 DNQVAHPQDPHHPPE-KPVIHCHKCGEPCKGEVLRVQTKHFHIXCFTCKDCAGCG 706
+ + + Q P+ P VI C++CG+ CKGEV+RV HFHI CFTC+ C GCG
Sbjct: 2 NTSIPYQQSPYSPRGGSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVC-GCG 55
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,651,811
Number of Sequences: 45328
Number of extensions: 930178
Number of successful extensions: 4497
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4484
length of database: 21,768,885
effective HSP length: 101
effective length of database: 17,190,757
effective search space used: 2544232036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)