BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-024864 (739 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 54 4e-09 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 53.9 bits (128), Expect = 4e-09 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = +2 Query: 218 VFITGCDSGFGNLLARQLDVRGLRVLAAC--LTEAGAQQLKKQTSDRLGDVLLDVTKTES 391 V ITGCDSGFG A++LD G VLA L GAQ+L+ S RL + +D+TK Sbjct: 85 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 144 Query: 392 NAAAHQWVEEPVREQRIWGPVHYA 463 + ++ + +WG V+ A Sbjct: 145 ISRVLEFTKVHTASTGLWGLVNNA 168 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 792,489 Number of Sequences: 1040 Number of extensions: 21775 Number of successful extensions: 87 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 86 length of database: 434,620 effective HSP length: 74 effective length of database: 357,660 effective search space used: 61159860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-024864 (739 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] 169 2e-42 Alignment gi|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent... 152 4e-42 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 160 7e-40 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 160 7e-40 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 160 7e-40 Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 160 7e-40 Alignment gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent... 160 7e-40 Alignment gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent... 157 8e-39 Alignment gi|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 ... 150 1e-36 Alignment gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr... 134 5e-32 >ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] Length = 317 Score = 169 bits (428), Expect = 2e-42 Identities = 98/202 (48%), Positives = 125/202 (61%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RW+RERQ+VSHL DK+VFITGCDSGFGN LARQLD+RGLRVLA C Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKTES AAA +WV+E V ++ +WG V+ A F Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 W+K E TL++ L P ++ + + + LGR+AFFG +YS S Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTL-SMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ I L +FG ++ Sbjct: 180 KYGVEAFSDILRRELQHFGVKV 201 >ref|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 260 Score = 152 bits (384), Expect(2) = 4e-42 Identities = 77/138 (55%), Positives = 93/138 (67%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD RGLRVLAAC Sbjct: 1 MWLYLVVLVVLYYLLRWYRERQVVSHLEDKFVFITGCDSGFGNRLARQLDQRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKTE+ A WV+E V ++ +WG V+ A P+ Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTENVTATTNWVKEHVGDRGLWGLVNNAGICTPMA 120 Query: 485 IT*WLKNENRIHTLQMEL 538 WL ++ + L + L Sbjct: 121 PNEWLTKQDFVKVLDVNL 138 Score = 37.4 bits (85), Expect(2) = 4e-42 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGELLFLEKSTPTPQLGWK 677 N +GV +VTL++L LV+K +GR V S + G + + ++T P W+ Sbjct: 137 NLLGVIDVTLSLLSLVRKARGRVVNVSSVLGRVSLVLQATAYPSTVWR 184 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 160 bits (406), Expect = 7e-40 Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKT+S AAA +WV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L + L P ++ R + + +GRVA G Y S Sbjct: 121 PNEWLTKQDFMKILDVNLLGV-IDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 160 bits (406), Expect = 7e-40 Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKT+S AAA +WV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L + L P ++ R + + +GRVA G Y S Sbjct: 121 PNEWLTKQDFMKILDVNLLGV-IDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 160 bits (406), Expect = 7e-40 Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKT+S AAA +WV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L + L P ++ R + + +GRVA G Y S Sbjct: 121 PNEWLTKQDFMKILDVNLLGV-IDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Bos taurus] Length = 317 Score = 160 bits (406), Expect = 7e-40 Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKT+S AAA +WV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L + L P ++ R + + +GRVA G Y S Sbjct: 121 PNEWLTKQDFMKILDVNLLGV-IDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Bos taurus] Length = 317 Score = 160 bits (406), Expect = 7e-40 Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V+LDVTKT+S AAA +WV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L + L P ++ R + + +GRVA G Y S Sbjct: 121 PNEWLTKQDFMKILDVNLLGV-IDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 338 Score = 157 bits (397), Expect = 8e-39 Identities = 90/186 (48%), Positives = 116/186 (62%), Gaps = 1/186 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD++GLRVLAAC Sbjct: 1 MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 L + GA+QL+ QTSDRL V+LDVTKTES AAA +WV+E V ++ +WG V+ A P+ Sbjct: 61 LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 WL ++ + L++ L P ++ R + +GR+A FG YS S Sbjct: 121 PNQWLTKQDFVKILEVNLLGV-IDVTLSLLPLVRKARGHVVNVSSVMGRMAVFGGGYSMS 179 Query: 662 PTGVES 679 GVE+ Sbjct: 180 KYGVEA 185 >ref|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 [Bos taurus] Length = 180 Score = 150 bits (378), Expect = 1e-36 Identities = 89/188 (47%), Positives = 111/188 (59%), Gaps = 9/188 (4%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGL VLAAC Sbjct: 1 MWLYLVVLMGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLMVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ Q SDRL V+LDVTKTES A A +WV+E V ++ +WG V+ A P Sbjct: 61 LTEQGAEQLRNQMSDRLQTVILDVTKTESIAEATEWVKEDVGDRGLWGLVNNAGILLPAA 120 Query: 485 IT*W--------LKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRL-PPLGRVAF 637 W + N N I +++ L + P ++TR + + P RV+ Sbjct: 121 PNEWQTKDDFSKILNVNLIGLIEVTLSF---------PPLIRKTRGRVVNVSSPARRVSL 171 Query: 638 FGEIYSYS 661 FG Y S Sbjct: 172 FGGGYCIS 179 >ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Bos taurus] Length = 313 Score = 134 bits (338), Expect = 5e-32 Identities = 83/187 (44%), Positives = 107/187 (57%), Gaps = 1/187 (0%) Frame = +2 Query: 170 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 RW++ +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T+ GAQ+L++ TS Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 +L +LLDVTKTES AA QWV + V EQ +W V+ A P WL E+ + + Sbjct: 72 QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131 Query: 530 MELHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVESLFHIPEMSL 706 + L H P K+ R + + GRVA G Y S GVE+ L Sbjct: 132 VNLVGLIEVTL-HMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRREL 190 Query: 707 INFGWEI 727 FG ++ Sbjct: 191 HYFGVKV 197 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,426,529 Number of Sequences: 33508 Number of extensions: 815246 Number of successful extensions: 3442 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3415 length of database: 16,112,626 effective HSP length: 99 effective length of database: 12,795,334 effective search space used: 1868118764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-024864 (739 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 172 3e-43 Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 156 1e-38 Alignment gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H... 131 7e-31 Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 107 2e-29 Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 107 2e-29 Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 94 3e-21 Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 56 1e-09 Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 56 1e-09 Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 56 1e-09 Alignment gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ... 50 2e-09 >ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] Length = 317 Score = 172 bits (435), Expect = 3e-43 Identities = 101/202 (50%), Positives = 124/202 (61%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW WYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RGLRVLAAC Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V LDVTK ES AAA QWV+E V ++ +WG V+ A P+ Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 + WL E+ ++ L++ L + P +R R + + LGRVAFF Y S Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTL-SMLPLVRRARGRIVNVSSILGRVAFFVGGYCVS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ I + +FG +I Sbjct: 180 KYGVEAFSDILRREIQHFGVKI 201 >ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] Length = 317 Score = 156 bits (395), Expect = 1e-38 Identities = 96/202 (47%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW WYRERQ++SHL DKYVFITGCDSGFG LLARQLD RGLRVLAAC Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ QTSDRL V LDVTKTES AAA QWV+E VR++ +WG V+ A P Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRL-PPLGRVAFFGEIYSYS 661 L ++ + L + L + P +R R + + +GRV+ FG Y S Sbjct: 121 PNELLTKQDLLTILDVNLLGV-IDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCIS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens] Length = 313 Score = 131 bits (329), Expect = 7e-31 Identities = 80/187 (42%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Frame = +2 Query: 170 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE G+Q+L++ TS Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 RL LLDVTK+ES AA QWV + V EQ +W V+ A P WL ++ + + Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131 Query: 530 MELHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVESLFHIPEMSL 706 + L H P KR R + + GRVA G Y S GVE+ L Sbjct: 132 VNLVGLIEVTL-HMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRREL 190 Query: 707 INFGWEI 727 FG ++ Sbjct: 191 YYFGVKV 197 >ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 107 bits (268), Expect(2) = 2e-29 Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 1/123 (0%) Frame = +2 Query: 173 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE+G+ LK +TS+ Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 RL VLLDVT E+ QWV+ V E+ +WG ++ A L T WL E+ ++ Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135 Query: 530 MEL 538 + L Sbjct: 136 VNL 138 Score = 39.3 bits (90), Expect(2) = 2e-29 Identities = 20/37 (54%), Positives = 24/37 (64%) Frame = +3 Query: 522 PSKWNSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 P + N G+ VTLNMLPLVKK QGR + S + G L Sbjct: 133 PIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRL 169 >ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 107 bits (268), Expect(2) = 2e-29 Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 1/123 (0%) Frame = +2 Query: 173 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE+G+ LK +TS+ Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 RL VLLDVT E+ QWV+ V E+ +WG ++ A L T WL E+ ++ Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135 Query: 530 MEL 538 + L Sbjct: 136 VNL 138 Score = 39.3 bits (90), Expect(2) = 2e-29 Identities = 20/37 (54%), Positives = 24/37 (64%) Frame = +3 Query: 522 PSKWNSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 P + N G+ VTLNMLPLVKK QGR + S + G L Sbjct: 133 PIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRL 169 >ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens] Length = 318 Score = 93.6 bits (231), Expect(2) = 3e-21 Identities = 52/111 (46%), Positives = 71/111 (63%) Frame = +2 Query: 179 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSDRLG 358 R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT +GA+ L++ S RL Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77 Query: 359 DVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNEN 511 LLD+T +S A +WVE V+E ++G V+ A + T WL ++ Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDD 128 Score = 26.2 bits (56), Expect(2) = 3e-21 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N++G VTL +LPL+++ +GR + + + G L Sbjct: 136 NTMGPIGVTLALLPLLQQARGRVINITSVLGRL 168 >ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 55.8 bits (133), Expect(2) = 1e-09 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Frame = +2 Query: 203 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----AGAQQLKKQTSDRLGDVLL 370 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL V L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 371 DVTKTESNAAAHQWVEEPVR--EQRIWGPVHYA 463 +V +E + V ++ E+ +WG V+ A Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNA 145 Score = 25.0 bits (53), Expect(2) = 1e-09 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N G +T + LPL+++ +GR V S + G + Sbjct: 168 NLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRM 200 >ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 55.8 bits (133), Expect(2) = 1e-09 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Frame = +2 Query: 203 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----AGAQQLKKQTSDRLGDVLL 370 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL V L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 371 DVTKTESNAAAHQWVEEPVR--EQRIWGPVHYA 463 +V +E + V ++ E+ +WG V+ A Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNA 145 Score = 25.0 bits (53), Expect(2) = 1e-09 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N G +T + LPL+++ +GR V S + G + Sbjct: 168 NLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRM 200 >ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 55.8 bits (133), Expect(2) = 1e-09 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Frame = +2 Query: 203 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----AGAQQLKKQTSDRLGDVLL 370 +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL V L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 371 DVTKTESNAAAHQWVEEPVR--EQRIWGPVHYA 463 +V +E + V ++ E+ +WG V+ A Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNA 145 Score = 25.0 bits (53), Expect(2) = 1e-09 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N G +T + LPL+++ +GR V S + G + Sbjct: 168 NLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRM 200 >ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens] Length = 387 Score = 50.4 bits (119), Expect(2) = 2e-09 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Frame = +2 Query: 176 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE--AGAQQLKKQTSD 349 Y Q + + K V +TG D G G+ L + LD G V A L E GA++L++ S Sbjct: 71 YLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSP 130 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYA 463 RL + +D+TK A+ V ++++ +W ++ A Sbjct: 131 RLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNA 168 Score = 29.3 bits (64), Expect(2) = 2e-09 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWG 626 N G EVT LPL++K +GR V S + G Sbjct: 192 NFFGTVEVTKTFLPLLRKSKGRLVNVSSMGG 222 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,371,413 Number of Sequences: 39411 Number of extensions: 950920 Number of successful extensions: 4499 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4478 length of database: 17,774,539 effective HSP length: 99 effective length of database: 13,872,850 effective search space used: 2025436100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-024864 (739 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 182 4e-46 Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 182 4e-46 Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 162 3e-40 Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 162 3e-40 Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 134 9e-32 Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 107 9e-24 Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 98 2e-23 Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 59 6e-11 Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 55 2e-09 Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 44 3e-06 >ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris] Length = 317 Score = 182 bits (461), Expect = 4e-46 Identities = 106/202 (52%), Positives = 125/202 (61%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GAQQL+ QTSDRL V+LDVTKTES AA QWVEE V ++ +WG V+ A F P C Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 + WLK E + ++ L P +R R + + LGR+AFFG Y S Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTL-SMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L +FG +I Sbjct: 180 KYGVEAFSDTLRRELRHFGVKI 201 >ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris] Length = 323 Score = 182 bits (461), Expect = 4e-46 Identities = 106/202 (52%), Positives = 125/202 (61%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GAQQL+ QTSDRL V+LDVTKTES AA QWVEE V ++ +WG V+ A F P C Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 + WLK E + ++ L P +R R + + LGR+AFFG Y S Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTL-SMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L +FG +I Sbjct: 180 KYGVEAFSDTLRRELRHFGVKI 201 >ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris] Length = 319 Score = 162 bits (410), Expect = 3e-40 Identities = 97/201 (48%), Positives = 115/201 (57%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GAQQL+ QTSDRL V+LDVTKTES AA QWVEE V ++ +WG V+ A P Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPPLGRVAFFGEIYSYSP 664 WL ++ + L + L S K +GR++ G Y S Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180 Query: 665 TGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 181 YGVEAFSDSLRRELTYFGVKV 201 >ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris] Length = 317 Score = 162 bits (410), Expect = 3e-40 Identities = 97/201 (48%), Positives = 115/201 (57%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GAQQL+ QTSDRL V+LDVTKTES AA QWVEE V ++ +WG V+ A P Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPPLGRVAFFGEIYSYSP 664 WL ++ + L + L S K +GR++ G Y S Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180 Query: 665 TGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 181 YGVEAFSDSLRRELTYFGVKV 201 >ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris] Length = 313 Score = 134 bits (337), Expect = 9e-32 Identities = 84/187 (44%), Positives = 105/187 (56%), Gaps = 1/187 (0%) Frame = +2 Query: 170 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE GAQ+L++ TS Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 RL LLDVT+TES AA QWV + V EQ +W V+ A P WL E+ + + Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131 Query: 530 MELHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVESLFHIPEMSL 706 + L H P K+ R + + GRVA G Y S GVE+ L Sbjct: 132 VNLVGLIEVTL-HMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRREL 190 Query: 707 INFGWEI 727 FG ++ Sbjct: 191 HYFGVKV 197 >ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris] Length = 753 Score = 107 bits (268), Expect = 9e-24 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 2/170 (1%) Frame = +2 Query: 173 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE+ + LK +TS+ Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 RL VLLDVT E+ QWV+ V E+ +WG ++ A L T WL E+ ++ Sbjct: 510 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569 Query: 530 MELHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVE 676 + L S + P K+ R + + + GR+A G Y+ S VE Sbjct: 570 VNLFGL-ISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVE 618 >ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris] Length = 339 Score = 97.8 bits (242), Expect(2) = 2e-23 Identities = 60/141 (42%), Positives = 78/141 (55%) Frame = +2 Query: 89 LPNKHFSGGPHTMWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQ 268 LP SG MW W R++Q + D +VFITGCDSGFG LLA + Sbjct: 12 LPPAGHSGS--AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALR 68 Query: 269 LDVRGLRVLAACLTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWG 448 LD RG RVLA+CLT AGA+ L++ S RL LLDVT+ +S A +WVE V E ++G Sbjct: 69 LDQRGFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFG 128 Query: 449 PVHYARTFPPLCIT*WLKNEN 511 V+ A + T WL ++ Sbjct: 129 LVNNAGVAGIIGPTPWLTQDD 149 Score = 29.3 bits (64), Expect(2) = 2e-23 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N++G VTL +LPL+++ +GR V S + G L Sbjct: 157 NTLGPIRVTLALLPLLQQSRGRVVNISSVLGRL 189 >ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris] Length = 382 Score = 58.5 bits (140), Expect(2) = 6e-11 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Frame = +2 Query: 176 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE--AGAQQLKKQTSD 349 Y Q + + K V ITG DSGFG+ L++ LD G V L E +GA++L++ S Sbjct: 72 YLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSK 131 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYA 463 RL + +D+T + AH V E ++++ +W V+ A Sbjct: 132 RLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNA 169 Score = 26.6 bits (57), Expect(2) = 6e-11 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRL 620 N G EVT LPL++K +GR V S + Sbjct: 193 NFFGAVEVTKAFLPLLRKSKGRLVNISSM 221 >ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris] Length = 299 Score = 55.5 bits (132), Expect(2) = 2e-09 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Frame = +2 Query: 191 MVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----AGAQQLKKQTSDRLG 358 ++ +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64 Query: 359 DVLLDVTKTESNAAAHQWVEEPVR--EQRIWGPVHYA 463 + L+V K E + V + E+ +WG V+ A Sbjct: 65 TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNA 101 Score = 24.6 bits (52), Expect(2) = 2e-09 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N G ++T LPL+++ +GR V S + G + Sbjct: 124 NLWGTVQMTKAFLPLIRRARGRIVNISSMLGRM 156 >ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris] Length = 323 Score = 44.3 bits (103), Expect(2) = 3e-06 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +2 Query: 233 CDSGFGNLLARQLDVRGLRVLAAC--LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAH 406 CDSGFG A++LD G VLA L GA +L+ S RL + +D+TK + A Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67 Query: 407 QWVEEPVREQRIWGPVHYA 463 ++ + +WG V+ A Sbjct: 68 EFTKAHTSSTGLWGLVNNA 86 Score = 25.0 bits (53), Expect(2) = 3e-06 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNV 605 N G E+T +LPL+++ +GR V Sbjct: 110 NFFGALELTKGLLPLLRRSRGRIV 133 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,505,257 Number of Sequences: 33732 Number of extensions: 952733 Number of successful extensions: 4051 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3248 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4042 length of database: 19,266,565 effective HSP length: 100 effective length of database: 15,893,365 effective search space used: 2304537925 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-024864 (739 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m... 167 8e-42 Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 152 9e-42 Alignment gi|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol shor... 144 7e-39 Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 138 3e-37 Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 151 6e-37 Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 150 1e-36 Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 150 1e-36 Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 147 8e-36 Alignment gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc... 123 2e-28 Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 112 5e-25 >ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus] Length = 317 Score = 167 bits (424), Expect = 8e-42 Identities = 95/201 (47%), Positives = 119/201 (59%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA++L+ +TSDRL V+LDVTKTES AA QWV+E V ++ +WG V+ A P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPPLGRVAFFGEIYSYSP 664 W + E+ + Q+ L + +K LGRVA FG YS S Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180 Query: 665 TGVESLFHIPEMSLINFGWEI 727 GVE+ + + +FG ++ Sbjct: 181 YGVEAFSDVLRHEVQDFGVKV 201 >ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus] Length = 318 Score = 152 bits (383), Expect(2) = 9e-42 Identities = 78/138 (56%), Positives = 96/138 (69%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA++L+ +TSDRL V+LDVTKTES AA QWV+E V + +WG V+ A PL Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120 Query: 485 IT*WLKNENRIHTLQMEL 538 ++ W+ +N L + L Sbjct: 121 LSQWMNKQNFASVLDVNL 138 Score = 37.0 bits (84), Expect(2) = 9e-42 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL-LFLEKSTPTPQLGWKAFFISRK*ALS 710 N +G+ EVTL MLPLV+K +GR V S + G + L + G +AF S + LS Sbjct: 137 NLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSDSLRRELS 196 Query: 711 ILGGKSHIL 737 G K I+ Sbjct: 197 YFGVKVAII 205 >ref|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase [Mus musculus] Length = 167 Score = 144 bits (363), Expect(2) = 7e-39 Identities = 76/138 (55%), Positives = 92/138 (66%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW ++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLCFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ +TSDRL V+LDVTKTES AA QWV+E V + +WG V+ P Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNTGISVPSG 120 Query: 485 IT*WLKNENRIHTLQMEL 538 + W+ +N L + L Sbjct: 121 PSQWMDKQNFASILDVNL 138 Score = 35.0 bits (79), Expect(2) = 7e-39 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWG 626 N +G+ EVTL+MLPLV+K +GR V S + G Sbjct: 137 NLLGMIEVTLSMLPLVRKARGRVVNVSSIVG 167 >ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus musculus] Length = 318 Score = 138 bits (347), Expect(2) = 3e-37 Identities = 72/138 (52%), Positives = 91/138 (65%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW R++RERQ+V HL DKYVFITGC SGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 E GA++L+++TS+RL V+LDVTKTES AA QWV+E V + +WG V+ A P Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120 Query: 485 IT*WLKNENRIHTLQMEL 538 W+K ++ L + L Sbjct: 121 PNEWMKKQDFASVLDVNL 138 Score = 35.8 bits (81), Expect(2) = 3e-37 Identities = 17/33 (51%), Positives = 24/33 (72%) Frame = +3 Query: 534 NSIGVTEVTLNMLPLVKKEQGRNVQGSRLWGEL 632 N +G+ EVTL+MLPLV+K +GR V S + G + Sbjct: 137 NLLGLIEVTLSMLPLVRKARGRVVNVSSILGRV 169 >ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] Length = 317 Score = 151 bits (382), Expect = 6e-37 Identities = 91/202 (45%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW R++RERQ+VSHL KYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA++L+ +TSDRL V+LDVTKTES AA QWV+E V + +WG V+ A P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 W+K ++ L + L P ++ R + + +GR++FFG Y S Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTL-SMLPLVRKARGRVVNVSSVMGRMSFFGGGYCIS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] Length = 317 Score = 150 bits (379), Expect = 1e-36 Identities = 90/202 (44%), Positives = 116/202 (57%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW R++R RQ+VSHL DKYVFITGCDSGFG LLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA++L+ +TSDRL V+LDVTKTES A QWV+E V + +WG V+ A P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 W+K ++ H L + L P ++ R + + +GRV+ FG Y S Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTL-SMLPLVRKARGRVVNVSSVMGRVSLFGGGYCIS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] Length = 316 Score = 150 bits (379), Expect = 1e-36 Identities = 93/202 (46%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA+QL+ +TSDRL V+LDVTKTES AA QWV+E V + +WG V+ A Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNA-GICVFA 119 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRL-PPLGRVAFFGEIYSYS 661 I WLK E+ + L + L P ++ R + + +GRV+ G Y S Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTL-SMLPLVRKARGRVVNISSSMGRVSLCGGGYCIS 178 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ + FG ++ Sbjct: 179 KYGVEAFSDSLRREISYFGVKV 200 >ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] Length = 317 Score = 147 bits (372), Expect = 8e-36 Identities = 90/202 (44%), Positives = 116/202 (57%), Gaps = 1/202 (0%) Frame = +2 Query: 125 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 304 MW ++RERQ+VS+L DKYVFITGCDSGFGNLLARQLD RG+RVLAAC Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 305 LTEAGAQQLKKQTSDRLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLC 484 LTE GA++L+ +TSDRL V+LDVTKTES A QWV+E V + +WG V+ A P Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120 Query: 485 IT*WLKNENRIHTLQMELHWCDRSDP*HASPGEKRTREKCPRLPP-LGRVAFFGEIYSYS 661 W+K ++ H L + L P ++ R + + LGRV+ G Y S Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTL-SMLPLVRKARGRVINVASVLGRVSLCGGAYCIS 179 Query: 662 PTGVESLFHIPEMSLINFGWEI 727 GVE+ L FG ++ Sbjct: 180 KYGVEAFSDSLRRELSYFGVKV 201 >ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus] Length = 313 Score = 123 bits (309), Expect = 2e-28 Identities = 78/187 (41%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Frame = +2 Query: 170 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSD 349 RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE GAQ+L + TS Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71 Query: 350 RLGDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQ 529 +L LLDVTK+E+ A QWV + V EQ +W V+ A P WL ++ + + Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131 Query: 530 MELHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVESLFHIPEMSL 706 + L + P K+ R + + GRVA FG Y S GVE+ L Sbjct: 132 INLVGL-IDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRREL 190 Query: 707 INFGWEI 727 FG ++ Sbjct: 191 HFFGVKV 197 >ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus] Length = 319 Score = 112 bits (279), Expect = 5e-25 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 1/168 (0%) Frame = +2 Query: 176 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEAGAQQLKKQTSDRL 355 Y+ + ++ + DKYVFITGCD+GFGNL AR D +G RV+AACLTE+G+ LK +TS+RL Sbjct: 18 YKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTESGSAALKAKTSERL 77 Query: 356 GDVLLDVTKTESNAAAHQWVEEPVREQRIWGPVHYARTFPPLCIT*WLKNENRIHTLQME 535 VLLDVT E+ QWV+ V E+ +WG ++ A L T WL ++ +++ Sbjct: 78 HTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVN 137 Query: 536 LHWCDRSDP*HASPGEKRTREKCPRLPPL-GRVAFFGEIYSYSPTGVE 676 L + P K+ R + + + GR+AF G Y+ S VE Sbjct: 138 LFGLINVTL-NMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSKYAVE 184 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,294,558 Number of Sequences: 45328 Number of extensions: 1071530 Number of successful extensions: 4172 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4154 length of database: 21,768,885 effective HSP length: 101 effective length of database: 17,190,757 effective search space used: 2475469008 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)