BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-025477
(420 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 54 1e-09
>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
Length = 400
Score = 54.3 bits (129), Expect = 1e-09
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +1
Query: 202 VFITGCDSGFGNLLARQLDVRGLRVLAAC--LTEQGAQQLRKQTSDRLETVLLDVTKTES 375
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 85 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 144
Query: 376 IA 381
I+
Sbjct: 145 IS 146
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,617
Number of Sequences: 1040
Number of extensions: 8205
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 434,620
effective HSP length: 68
effective length of database: 363,900
effective search space used: 25836900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-025477
(420 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 146 5e-36
Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 146 5e-36
Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 146 5e-36
Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 146 5e-36
Alignment gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent... 146 5e-36
Alignment gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] 144 2e-35
Alignment gi|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 ... 143 5e-35
Alignment gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent... 142 9e-35
Alignment gi|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent... 141 1e-34
Alignment gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr... 115 9e-27
>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 5 [Bos taurus]
Length = 317
Score = 146 bits (369), Expect = 5e-36
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT V+E
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKE 99
>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 4 [Bos taurus]
Length = 317
Score = 146 bits (369), Expect = 5e-36
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT V+E
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKE 99
>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 3 [Bos taurus]
Length = 317
Score = 146 bits (369), Expect = 5e-36
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT V+E
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKE 99
>ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 2 [Bos taurus]
Length = 317
Score = 146 bits (369), Expect = 5e-36
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT V+E
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKE 99
>ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 1 [Bos taurus]
Length = 317
Score = 146 bits (369), Expect = 5e-36
Identities = 72/99 (72%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT V+E
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKE 99
>ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus]
Length = 317
Score = 144 bits (364), Expect = 2e-35
Identities = 72/99 (72%), Positives = 80/99 (80%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RW+RERQ+VSHL DK+VFITGCDSGFGN LARQLD+RGLRVLA C
Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTEQGA+QLR QTSDRL+TV+LDVTKTESIAAAT V+E
Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKE 99
>ref|XP_871276.1| PREDICTED: similar to retinol dehydrogenase 16 [Bos taurus]
Length = 180
Score = 143 bits (360), Expect = 5e-35
Identities = 72/99 (72%), Positives = 79/99 (79%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGL VLAAC
Sbjct: 1 MWLYLVVLMGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLMVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTEQGA+QLR Q SDRL+TV+LDVTKTESIA AT V+E
Sbjct: 61 LTEQGAEQLRNQMSDRLQTVILDVTKTESIAEATEWVKE 99
>ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 [Bos taurus]
Length = 338
Score = 142 bits (358), Expect = 9e-35
Identities = 70/99 (70%), Positives = 80/99 (80%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD++GLRVLAAC
Sbjct: 1 MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
L +QGA+QLR QTSDRL+TV+LDVTKTES+AAAT V+E
Sbjct: 61 LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKE 99
>ref|XP_597943.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 [Bos taurus]
Length = 260
Score = 141 bits (356), Expect = 1e-34
Identities = 70/99 (70%), Positives = 78/99 (78%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DK+VFITGCDSGFGN LARQLD RGLRVLAAC
Sbjct: 1 MWLYLVVLVVLYYLLRWYRERQVVSHLEDKFVFITGCDSGFGNRLARQLDQRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTEQGA+QLR QTSDRL+TV+LDVTKTE++ A T V+E
Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTENVTATTNWVKE 99
>ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Bos taurus]
Length = 313
Score = 115 bits (289), Expect = 9e-27
Identities = 56/84 (66%), Positives = 71/84 (84%)
Frame = +1
Query: 154 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
RW++ +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T++GAQ+L++ TS
Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71
Query: 334 RLETVLLDVTKTESIAAATR*VEE 405
+L+T+LLDVTKTESI AAT+ V +
Sbjct: 72 QLQTILLDVTKTESIKAATQWVRD 95
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,279,943
Number of Sequences: 33508
Number of extensions: 319048
Number of successful extensions: 2165
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 16,112,626
effective HSP length: 91
effective length of database: 13,063,398
effective search space used: 627043104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-025477
(420 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 145 1e-35
Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 141 2e-34
Alignment gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H... 109 7e-25
Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 90 6e-19
Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 90 6e-19
Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 86 1e-17
Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 57 7e-09
Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 57 7e-09
Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 57 7e-09
Alignment gi|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo ... 49 1e-06
>ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]
Length = 317
Score = 145 bits (366), Expect = 1e-35
Identities = 74/99 (74%), Positives = 79/99 (79%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW WYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRLETV LDVTK ESIAAAT+ V+E
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKE 99
>ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]
Length = 317
Score = 141 bits (356), Expect = 2e-34
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW WYRERQ++SHL DKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR QTSDRLETV LDVTKTES+AAA + V+E
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKE 99
>ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens]
Length = 313
Score = 109 bits (273), Expect = 7e-25
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +1
Query: 154 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS
Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71
Query: 334 RLETVLLDVTKTESIAAATR*VEE 405
RL+T LLDVTK+ESI AA + V +
Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRD 95
>ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
Length = 319
Score = 90.1 bits (222), Expect = 6e-19
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +1
Query: 157 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 334 RLETVLLDVTKTESI 378
RL TVLLDVT E++
Sbjct: 76 RLRTVLLDVTDPENV 90
>ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
Length = 319
Score = 90.1 bits (222), Expect = 6e-19
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +1
Query: 157 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 334 RLETVLLDVTKTESI 378
RL TVLLDVT E++
Sbjct: 76 RLRTVLLDVTDPENV 90
>ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens]
Length = 318
Score = 85.5 bits (210), Expect = 1e-17
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = +1
Query: 163 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 342
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 343 TVLLDVTKTESIAAATR*VE 402
T LLD+T +S+ A + VE
Sbjct: 78 TTLLDITDPQSVQQAAKWVE 97
>ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
Length = 343
Score = 56.6 bits (135), Expect = 7e-09
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 187 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----QGAQQLRKQTSDRLETVLL 354
+G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L
Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112
Query: 355 DVTKTESI 378
+V +E +
Sbjct: 113 NVCSSEEV 120
>ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
Length = 343
Score = 56.6 bits (135), Expect = 7e-09
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 187 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----QGAQQLRKQTSDRLETVLL 354
+G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L
Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112
Query: 355 DVTKTESI 378
+V +E +
Sbjct: 113 NVCSSEEV 120
>ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
Length = 343
Score = 56.6 bits (135), Expect = 7e-09
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 187 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----QGAQQLRKQTSDRLETVLL 354
+G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L
Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112
Query: 355 DVTKTESI 378
+V +E +
Sbjct: 113 NVCSSEEV 120
>ref|NP_000187.2| hydroxysteroid (11-beta) dehydrogenase 2 [Homo sapiens]
Length = 405
Score = 49.3 bits (116), Expect = 1e-06
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 202 VFITGCDSGFGNLLARQLDVRGLRVLAAC--LTEQGAQQLRKQTSDRLETVLLDVTKTES 375
V ITGCDSGFG A++LD G VLA L GA +LR S RL + +D+TK
Sbjct: 85 VLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPGAIELRTCCSPRLRLLQMDLTKPGD 144
Query: 376 IA 381
I+
Sbjct: 145 IS 146
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,257,789
Number of Sequences: 39411
Number of extensions: 378026
Number of successful extensions: 2751
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2734
length of database: 17,774,539
effective HSP length: 91
effective length of database: 14,188,138
effective search space used: 681030624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-025477
(420 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m... 145 2e-35
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 140 3e-34
Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 139 1e-33
Alignment gi|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol shor... 137 3e-33
Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 136 8e-33
Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 133 7e-32
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 132 9e-32
Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 130 6e-31
Alignment gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc... 106 7e-24
Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 92 1e-19
>ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus]
Length = 317
Score = 145 bits (365), Expect = 2e-35
Identities = 72/99 (72%), Positives = 81/99 (81%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA++LR +TSDRLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKE 99
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]
Length = 316
Score = 140 bits (354), Expect = 3e-34
Identities = 71/99 (71%), Positives = 81/99 (81%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR +TSDRLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKE 99
>ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus]
Length = 318
Score = 139 bits (349), Expect = 1e-33
Identities = 70/99 (70%), Positives = 81/99 (81%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA++LR +TSDRLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKE 99
>ref|NP_955017.1| truncated cis-retinol/3alpha-hydroxysterol short-chain
dehydrogenase [Mus musculus]
Length = 167
Score = 137 bits (346), Expect = 3e-33
Identities = 70/99 (70%), Positives = 80/99 (80%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW ++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLCFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA+QLR +TSDRLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKE 99
>ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]
Length = 317
Score = 136 bits (342), Expect = 8e-33
Identities = 69/99 (69%), Positives = 80/99 (80%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW R++RERQ+VSHL KYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA++LR +TSDRLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKE 99
>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]
Length = 317
Score = 133 bits (334), Expect = 7e-32
Identities = 67/99 (67%), Positives = 78/99 (78%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW R++R RQ+VSHL DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA++LR +TSDRLETV+LDVTKTESI AT+ V+E
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKE 99
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]
Length = 317
Score = 132 bits (333), Expect = 9e-32
Identities = 67/99 (67%), Positives = 79/99 (79%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW ++RERQ+VS+L DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GA++LR +TSDRLETV+LDVTKTESI AT+ V+E
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKE 99
>ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
[Mus musculus]
Length = 318
Score = 130 bits (326), Expect = 6e-31
Identities = 65/99 (65%), Positives = 78/99 (78%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW R++RERQ+V HL DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
E+GA++LR++TS+RLETV+LDVTKTESI AAT+ V+E
Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKE 99
>ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus]
Length = 313
Score = 106 bits (265), Expect = 7e-24
Identities = 50/84 (59%), Positives = 68/84 (80%)
Frame = +1
Query: 154 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS
Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71
Query: 334 RLETVLLDVTKTESIAAATR*VEE 405
+L+T LLDVTK+E++ A + V +
Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRD 95
>ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus]
Length = 319
Score = 92.4 bits (228), Expect = 1e-19
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +1
Query: 160 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRL 339
Y+ + ++ + DKYVFITGCD+GFGNL AR D +G RV+AACLTE G+ L+ +TS+RL
Sbjct: 18 YKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTESGSAALKAKTSERL 77
Query: 340 ETVLLDVTKTESI 378
TVLLDVT E++
Sbjct: 78 HTVLLDVTDPENV 90
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,201,906
Number of Sequences: 45328
Number of extensions: 425475
Number of successful extensions: 2453
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2445
length of database: 21,768,885
effective HSP length: 93
effective length of database: 17,553,381
effective search space used: 807455526
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-025477
(420 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 151 2e-37
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 151 2e-37
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 150 3e-37
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 150 3e-37
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 115 1e-26
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 89 1e-18
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 88 3e-18
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 57 6e-09
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 52 2e-07
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 2 [Canis familiaris]
Length = 319
Score = 151 bits (381), Expect = 2e-37
Identities = 76/99 (76%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AAT+ VEE
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEE 99
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 1 [Canis familiaris]
Length = 317
Score = 151 bits (381), Expect = 2e-37
Identities = 76/99 (76%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AAT+ VEE
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEE 99
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris]
Length = 317
Score = 150 bits (380), Expect = 3e-37
Identities = 76/99 (76%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AAT+ VEE
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEE 99
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris]
Length = 323
Score = 150 bits (380), Expect = 3e-37
Identities = 76/99 (76%), Positives = 82/99 (82%)
Frame = +1
Query: 109 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 288
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 289 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VEE 405
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AAT+ VEE
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEE 99
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris]
Length = 313
Score = 115 bits (288), Expect = 1e-26
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 154 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71
Query: 334 RLETVLLDVTKTESIAAATR*VEE 405
RL+T LLDVT+TESI AAT+ V +
Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRD 95
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris]
Length = 339
Score = 89.4 bits (220), Expect = 1e-18
Identities = 51/109 (46%), Positives = 64/109 (58%)
Frame = +1
Query: 76 LPNKHFSGPHTMWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQL 255
LP SG MW W R++Q + D +VFITGCDSGFG LLA +L
Sbjct: 12 LPPAGHSGS-AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALRL 69
Query: 256 DVRGLRVLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATR*VE 402
D RG RVLA+CLT GA+ L++ S RL T LLDVT+ +S+ A + VE
Sbjct: 70 DQRGFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVE 118
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol
dehydrogenase/reductase [Canis familiaris]
Length = 753
Score = 87.8 bits (216), Expect = 3e-18
Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +1
Query: 157 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 333
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE + L+ +TS+
Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509
Query: 334 RLETVLLDVTKTESI 378
RL TVLLDVT E++
Sbjct: 510 RLHTVLLDVTDPENV 524
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris]
Length = 299
Score = 57.0 bits (136), Expect = 6e-09
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +1
Query: 175 MVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTE----QGAQQLRKQTSDRLE 342
++ +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL
Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64
Query: 343 TVLLDVTKTESI 378
T+ L+V K E +
Sbjct: 65 TIQLNVCKGEEV 76
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
[Canis familiaris]
Length = 382
Score = 51.6 bits (122), Expect = 2e-07
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 160 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ--GAQQLRKQTSD 333
Y Q + + K V ITG DSGFG+ L++ LD G V L E+ GA++LR+ S
Sbjct: 72 YLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSK 131
Query: 334 RLETVLLDVTKTESIAAATR*VEEGRRKR 420
RL + +D+T + I A V E + R
Sbjct: 132 RLSVLQMDITDQQQIKDAHSKVVEKLQDR 160
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,738,275
Number of Sequences: 33732
Number of extensions: 373869
Number of successful extensions: 2531
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 19,266,565
effective HSP length: 92
effective length of database: 16,163,221
effective search space used: 759671387
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)